Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0216530 | XP_003596142.3 | 99.371 | 159 | 1 | 0 | 1 | 159 | 1 | 159 | 3.71e-114 | 330 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0216530 | sp|Q9SHE9|LBD4_ARATH | 83.333 | 120 | 20 | 0 | 1 | 120 | 1 | 120 | 2.39e-64 | 197 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0216530 | B7FJ94 | 99.371 | 159 | 1 | 0 | 1 | 159 | 1 | 159 | 1.77e-114 | 330 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0216530 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015090 | Msa0216530 | 0.810078 | 1.378087e-50 | -8.615850e-47 |
| Msa0020410 | Msa0216530 | 0.810175 | 1.313590e-50 | -8.615850e-47 |
| Msa0037880 | Msa0216530 | 0.818379 | 2.021257e-52 | -8.615850e-47 |
| Msa0043980 | Msa0216530 | 0.812642 | 3.825688e-51 | -8.615850e-47 |
| Msa0044000 | Msa0216530 | 0.804926 | 1.708323e-49 | -8.615850e-47 |
| Msa0049750 | Msa0216530 | 0.804990 | 1.656725e-49 | -8.615850e-47 |
| Msa0051210 | Msa0216530 | 0.802146 | 6.444283e-49 | -8.615850e-47 |
| Msa0051450 | Msa0216530 | 0.800975 | 1.119912e-48 | -8.615850e-47 |
| Msa0051930 | Msa0216530 | 0.822940 | 1.810473e-53 | -8.615850e-47 |
| Msa0065950 | Msa0216530 | 0.815321 | 9.817162e-52 | -8.615850e-47 |
| Msa0078900 | Msa0216530 | 0.801259 | 9.797135e-49 | -8.615850e-47 |
| Msa0096030 | Msa0216530 | 0.820493 | 6.664298e-53 | -8.615850e-47 |
| Msa0101830 | Msa0216530 | 0.810332 | 1.215284e-50 | -8.615850e-47 |
| Msa0126610 | Msa0216530 | 0.802251 | 6.131704e-49 | -8.615850e-47 |
| Msa0127800 | Msa0216530 | 0.807189 | 5.707427e-50 | -8.615850e-47 |
| Msa0143930 | Msa0216530 | 0.807859 | 4.113791e-50 | -8.615850e-47 |
| Msa0153830 | Msa0216530 | 0.829490 | 5.000050e-55 | -8.615850e-47 |
| Msa0171540 | Msa0216530 | 0.804369 | 2.232670e-49 | -8.615850e-47 |
| Msa0178930 | Msa0216530 | 0.814842 | 1.253634e-51 | -8.615850e-47 |
| Msa0187250 | Msa0216530 | 0.801979 | 6.972250e-49 | -8.615850e-47 |
| Msa0191910 | Msa0216530 | 0.816178 | 6.321169e-52 | -8.615850e-47 |
| Msa0206010 | Msa0216530 | 0.822268 | 2.594451e-53 | -8.615850e-47 |
| Msa0216530 | Msa0217680 | 0.823738 | 1.178583e-53 | -8.615850e-47 |
| Msa0216530 | Msa0223010 | 0.822045 | 2.921896e-53 | -8.615850e-47 |
| Msa0216530 | Msa0233300 | 0.824616 | 7.327307e-54 | -8.615850e-47 |
| Msa0216530 | Msa0234020 | 0.804797 | 1.818314e-49 | -8.615850e-47 |
| Msa0216530 | Msa0257500 | 0.808619 | 2.833581e-50 | -8.615850e-47 |
| Msa0216530 | Msa0265150 | 0.800560 | 1.361307e-48 | -8.615850e-47 |
| Msa0216530 | Msa0287410 | 0.802924 | 4.453742e-49 | -8.615850e-47 |
| Msa0216530 | Msa0291650 | 0.825528 | 4.462502e-54 | -8.615850e-47 |
| Msa0216530 | Msa0292030 | 0.801558 | 8.507602e-49 | -8.615850e-47 |
| Msa0216530 | Msa0302400 | 0.804951 | 1.688493e-49 | -8.615850e-47 |
| Msa0216530 | Msa0315290 | 0.800680 | 1.286667e-48 | -8.615850e-47 |
| Msa0216530 | Msa0319170 | 0.811001 | 8.710560e-51 | -8.615850e-47 |
| Msa0216530 | Msa0326110 | 0.822477 | 2.320301e-53 | -8.615850e-47 |
| Msa0216530 | Msa0339620 | 0.822124 | 2.801324e-53 | -8.615850e-47 |
| Msa0216530 | Msa0342410 | 0.804135 | 2.497488e-49 | -8.615850e-47 |
| Msa0216530 | Msa0344910 | 0.832704 | 8.120980e-56 | -8.615850e-47 |
| Msa0216530 | Msa0344980 | 0.834277 | 3.289714e-56 | -8.615850e-47 |
| Msa0216530 | Msa0357760 | 0.811701 | 6.137408e-51 | -8.615850e-47 |
| Msa0216530 | Msa0357790 | 0.813452 | 2.541421e-51 | -8.615850e-47 |
| Msa0216530 | Msa0357830 | 0.818437 | 1.961086e-52 | -8.615850e-47 |
| Msa0216530 | Msa0357840 | 0.812976 | 3.232819e-51 | -8.615850e-47 |
| Msa0216530 | Msa0357870 | 0.810521 | 1.105960e-50 | -8.615850e-47 |
| Msa0216530 | Msa0376910 | 0.834154 | 3.530794e-56 | -8.615850e-47 |
| Msa0216530 | Msa0379640 | 0.816418 | 5.585964e-52 | -8.615850e-47 |
| Msa0216530 | Msa0382180 | 0.800267 | 1.561329e-48 | -8.615850e-47 |
| Msa0216530 | Msa0389810 | 0.804480 | 2.116590e-49 | -8.615850e-47 |
| Msa0216530 | Msa0394340 | 0.827056 | 1.931455e-54 | -8.615850e-47 |
| Msa0216530 | Msa0412840 | 0.828011 | 1.139162e-54 | -8.615850e-47 |
| Msa0216530 | Msa0431690 | 0.809712 | 1.652166e-50 | -8.615850e-47 |
| Msa0216530 | Msa0433530 | 0.807346 | 5.286436e-50 | -8.615850e-47 |
| Msa0216530 | Msa0438040 | 0.802753 | 4.831632e-49 | -8.615850e-47 |
| Msa0216530 | Msa0442200 | 0.824910 | 6.248468e-54 | -8.615850e-47 |
| Msa0216530 | Msa0468130 | 0.800976 | 1.119582e-48 | -8.615850e-47 |
| Msa0216530 | Msa0471900 | 0.823384 | 1.426187e-53 | -8.615850e-47 |
| Msa0216530 | Msa0477080 | 0.803508 | 3.370833e-49 | -8.615850e-47 |
| Msa0216530 | Msa0477130 | -0.805049 | 1.610516e-49 | -8.615850e-47 |
| Msa0216530 | Msa0477260 | 0.818491 | 1.906286e-52 | -8.615850e-47 |
| Msa0216530 | Msa0489610 | 0.808913 | 2.452159e-50 | -8.615850e-47 |
| Msa0216530 | Msa0493630 | 0.802088 | 6.621977e-49 | -8.615850e-47 |
| Msa0216530 | Msa0562440 | 0.821849 | 3.243877e-53 | -8.615850e-47 |
| Msa0216530 | Msa0608160 | 0.812721 | 3.676790e-51 | -8.615850e-47 |
| Msa0216530 | Msa0608710 | 0.803123 | 4.050286e-49 | -8.615850e-47 |
| Msa0216530 | Msa0610430 | 0.830609 | 2.667350e-55 | -8.615850e-47 |
| Msa0216530 | Msa0620960 | 0.819719 | 1.001853e-52 | -8.615850e-47 |
| Msa0216530 | Msa0621790 | 0.820588 | 6.336048e-53 | -8.615850e-47 |
| Msa0216530 | Msa0648080 | 0.814063 | 1.864453e-51 | -8.615850e-47 |
| Msa0216530 | Msa0653490 | 0.846212 | 2.503641e-59 | -8.615850e-47 |
| Msa0216530 | Msa0673460 | 0.817090 | 3.949480e-52 | -8.615850e-47 |
| Msa0216530 | Msa0692830 | 0.802220 | 6.219884e-49 | -8.615850e-47 |
| Msa0216530 | Msa0692950 | 0.815795 | 7.697846e-52 | -8.615850e-47 |
| Msa0216530 | Msa0711100 | 0.800005 | 1.765592e-48 | -8.615850e-47 |
| Msa0216530 | Msa0723110 | 0.827921 | 1.197794e-54 | -8.615850e-47 |
| Msa0216530 | Msa0731180 | 0.835275 | 1.844360e-56 | -8.615850e-47 |
| Msa0216530 | Msa0747270 | 0.808172 | 3.528642e-50 | -8.615850e-47 |
| Msa0216530 | Msa0766630 | 0.802820 | 4.679703e-49 | -8.615850e-47 |
| Msa0216530 | Msa0771580 | 0.809131 | 2.201516e-50 | -8.615850e-47 |
| Msa0216530 | Msa0771720 | 0.823244 | 1.537469e-53 | -8.615850e-47 |
| Msa0216530 | Msa0773840 | 0.829606 | 4.686137e-55 | -8.615850e-47 |
| Msa0216530 | Msa0795720 | 0.821368 | 4.189666e-53 | -8.615850e-47 |
| Msa0216530 | Msa0805550 | 0.801562 | 8.491889e-49 | -8.615850e-47 |
| Msa0216530 | Msa0820850 | 0.832247 | 1.054085e-55 | -8.615850e-47 |
| Msa0216530 | Msa0832150 | 0.807974 | 3.889176e-50 | -8.615850e-47 |
| Msa0216530 | Msa0833460 | 0.822635 | 2.132176e-53 | -8.615850e-47 |
| Msa0216530 | Msa0849030 | 0.829905 | 3.961978e-55 | -8.615850e-47 |
| Msa0216530 | Msa0861130 | 0.829297 | 5.569957e-55 | -8.615850e-47 |
| Msa0216530 | Msa0876580 | 0.827689 | 1.361682e-54 | -8.615850e-47 |
| Msa0216530 | Msa0882690 | 0.805666 | 1.195407e-49 | -8.615850e-47 |
| Msa0216530 | Msa0923870 | 0.808473 | 3.044733e-50 | -8.615850e-47 |
| Msa0216530 | Msa0933100 | 0.807229 | 5.596592e-50 | -8.615850e-47 |
| Msa0216530 | Msa0944550 | 0.803576 | 3.263334e-49 | -8.615850e-47 |
| Msa0216530 | Msa0947760 | 0.810187 | 1.305429e-50 | -8.615850e-47 |
| Msa0216530 | Msa0958920 | 0.810919 | 9.072217e-51 | -8.615850e-47 |
| Msa0216530 | Msa0974630 | 0.802116 | 6.535791e-49 | -8.615850e-47 |
| Msa0216530 | Msa0982270 | 0.818869 | 1.564864e-52 | -8.615850e-47 |
| Msa0216530 | Msa1008400 | 0.805462 | 1.319548e-49 | -8.615850e-47 |
| Msa0216530 | Msa1008460 | 0.801984 | 6.956406e-49 | -8.615850e-47 |
| Msa0216530 | Msa1012830 | 0.801408 | 9.133373e-49 | -8.615850e-47 |
| Msa0216530 | Msa1014540 | 0.800394 | 1.471051e-48 | -8.615850e-47 |
| Msa0216530 | Msa1018040 | 0.811222 | 7.799788e-51 | -8.615850e-47 |
| Msa0216530 | Msa1023180 | 0.802999 | 4.296649e-49 | -8.615850e-47 |
| Msa0216530 | Msa1034150 | 0.820768 | 5.760850e-53 | -8.615850e-47 |
| Msa0216530 | Msa1043050 | 0.806662 | 7.377045e-50 | -8.615850e-47 |
| Msa0216530 | Msa1058750 | 0.809540 | 1.798698e-50 | -8.615850e-47 |
| Msa0216530 | Msa1082500 | 0.808789 | 2.605786e-50 | -8.615850e-47 |
| Msa0216530 | Msa1090260 | 0.804360 | 2.242836e-49 | -8.615850e-47 |
| Msa0216530 | Msa1107260 | 0.807804 | 4.226151e-50 | -8.615850e-47 |
| Msa0216530 | Msa1144040 | 0.800459 | 1.427053e-48 | -8.615850e-47 |
| Msa0216530 | Msa1150710 | 0.814100 | 1.829515e-51 | -8.615850e-47 |
| Msa0216530 | Msa1150900 | 0.814311 | 1.643142e-51 | -8.615850e-47 |
| Msa0216530 | Msa1159840 | 0.804987 | 1.658809e-49 | -8.615850e-47 |
| Msa0216530 | Msa1174040 | 0.821726 | 3.463774e-53 | -8.615850e-47 |
| Msa0216530 | Msa1181250 | 0.801889 | 7.277268e-49 | -8.615850e-47 |
| Msa0216530 | Msa1181800 | 0.819182 | 1.328611e-52 | -8.615850e-47 |
| Msa0216530 | Msa1228590 | 0.800426 | 1.449531e-48 | -8.615850e-47 |
| Msa0216530 | Msa1233890 | 0.801297 | 9.621327e-49 | -8.615850e-47 |
| Msa0216530 | Msa1247250 | 0.804034 | 2.621738e-49 | -8.615850e-47 |
| Msa0216530 | Msa1270660 | 0.801916 | 7.184203e-49 | -8.615850e-47 |
| Msa0216530 | Msa1270730 | 0.804183 | 2.441432e-49 | -8.615850e-47 |
| Msa0216530 | Msa1272870 | 0.804960 | 1.680398e-49 | -8.615850e-47 |
| Msa0216530 | Msa1276440 | 0.816240 | 6.122303e-52 | -8.615850e-47 |
| Msa0216530 | Msa1305340 | 0.800572 | 1.353677e-48 | -8.615850e-47 |
| Msa0216530 | Msa1306750 | 0.802307 | 5.968460e-49 | -8.615850e-47 |
| Msa0216530 | Msa1307740 | 0.813821 | 2.108020e-51 | -8.615850e-47 |
| Msa0216530 | Msa1335230 | 0.807996 | 3.846265e-50 | -8.615850e-47 |
| Msa0216530 | Msa1342100 | 0.801235 | 9.906754e-49 | -8.615850e-47 |
| Msa0216530 | Msa1348600 | 0.815469 | 9.096754e-52 | -8.615850e-47 |
| Msa0216530 | Msa1362880 | 0.807833 | 4.167159e-50 | -8.615850e-47 |
| Msa0216530 | Msa1377080 | 0.806301 | 8.793293e-50 | -8.615850e-47 |
| Msa0216530 | Msa1397120 | 0.827390 | 1.606289e-54 | -8.615850e-47 |
| Msa0216530 | Msa1401290 | 0.820721 | 5.906481e-53 | -8.615850e-47 |
| Msa0216530 | Msa1403340 | 0.818464 | 1.933755e-52 | -8.615850e-47 |
| Msa0216530 | Msa1403890 | 0.818184 | 2.237194e-52 | -8.615850e-47 |
| Msa0216530 | Msa1407600 | 0.812369 | 4.389126e-51 | -8.615850e-47 |
| Msa0216530 | Msa1419960 | 0.805322 | 1.411897e-49 | -8.615850e-47 |
| Msa0216530 | Msa1423820 | 0.814072 | 1.855712e-51 | -8.615850e-47 |
| Msa0216530 | Msa1427230 | 0.835088 | 2.056345e-56 | -8.615850e-47 |
| Msa0216530 | Msa1430680 | 0.830066 | 3.620278e-55 | -8.615850e-47 |
| Msa0216530 | Msa1444740 | 0.817463 | 3.255525e-52 | -8.615850e-47 |
| Msa0216530 | Msa1460830 | 0.836482 | 9.121124e-57 | -8.615850e-47 |
| Msa0216530 | Msa1462070 | 0.809333 | 1.993257e-50 | -8.615850e-47 |
| Msa0216530 | Msa1462840 | 0.819487 | 1.131700e-52 | -8.615850e-47 |
| Msa0216530 | Msa1466730 | 0.819368 | 1.204587e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0216530 | MtrunA17_Chr2g0311601 | 99.371 | 159 | 1 | 0 | 1 | 159 | 1 | 159 | 3.42e-118 | 330 |
| Msa0216530 | MtrunA17_Chr4g0043421 | 73.973 | 146 | 31 | 2 | 4 | 142 | 6 | 151 | 1.81e-75 | 223 |
| Msa0216530 | MtrunA17_Chr5g0437571 | 76.364 | 110 | 26 | 0 | 9 | 118 | 2 | 111 | 1.77e-58 | 179 |
| Msa0216530 | MtrunA17_Chr3g0114061 | 75.455 | 110 | 27 | 0 | 9 | 118 | 4 | 113 | 2.11e-57 | 176 |
| Msa0216530 | MtrunA17_Chr3g0106101 | 71.429 | 112 | 32 | 0 | 12 | 123 | 6 | 117 | 3.89e-57 | 176 |
| Msa0216530 | MtrunA17_Chr4g0030001 | 72.072 | 111 | 30 | 1 | 11 | 120 | 22 | 132 | 1.63e-54 | 170 |
| Msa0216530 | MtrunA17_Chr1g0200201 | 71.028 | 107 | 31 | 0 | 14 | 120 | 73 | 179 | 8.02e-51 | 162 |
| Msa0216530 | MtrunA17_Chr5g0438091 | 58.462 | 130 | 45 | 1 | 10 | 139 | 36 | 156 | 5.06e-49 | 156 |
| Msa0216530 | MtrunA17_Chr3g0117121 | 56.934 | 137 | 59 | 0 | 12 | 148 | 9 | 145 | 1.25e-48 | 155 |
| Msa0216530 | MtrunA17_Chr6g0449641 | 61.607 | 112 | 42 | 1 | 12 | 123 | 8 | 118 | 1.39e-48 | 154 |
| Msa0216530 | MtrunA17_Chr3g0129071 | 63.063 | 111 | 41 | 0 | 10 | 120 | 44 | 154 | 3.56e-48 | 155 |
| Msa0216530 | MtrunA17_Chr4g0058651 | 58.871 | 124 | 48 | 1 | 12 | 135 | 10 | 130 | 1.07e-47 | 152 |
| Msa0216530 | MtrunA17_Chr7g0227511 | 64.078 | 103 | 37 | 0 | 12 | 114 | 10 | 112 | 4.75e-47 | 150 |
| Msa0216530 | MtrunA17_Chr6g0449651 | 54.198 | 131 | 51 | 1 | 12 | 133 | 66 | 196 | 2.43e-46 | 149 |
| Msa0216530 | MtrunA17_Chr7g0260971 | 57.143 | 112 | 47 | 1 | 5 | 115 | 6 | 117 | 8.50e-44 | 144 |
| Msa0216530 | MtrunA17_Chr5g0432451 | 62.185 | 119 | 45 | 0 | 5 | 123 | 35 | 153 | 1.77e-43 | 143 |
| Msa0216530 | MtrunA17_Chr3g0115431 | 61.765 | 102 | 39 | 0 | 12 | 113 | 8 | 109 | 2.55e-42 | 140 |
| Msa0216530 | MtrunA17_Chr5g0402611 | 62.745 | 102 | 38 | 0 | 12 | 113 | 7 | 108 | 3.08e-42 | 142 |
| Msa0216530 | MtrunA17_Chr5g0437401 | 58.491 | 106 | 44 | 0 | 5 | 110 | 3 | 108 | 4.16e-41 | 135 |
| Msa0216530 | MtrunA17_Chr3g0113891 | 59.434 | 106 | 43 | 0 | 5 | 110 | 6 | 111 | 5.54e-41 | 135 |
| Msa0216530 | MtrunA17_Chr7g0225111 | 52.632 | 114 | 52 | 1 | 12 | 123 | 4 | 117 | 2.71e-40 | 131 |
| Msa0216530 | MtrunA17_Chr8g0351721 | 54.701 | 117 | 52 | 1 | 2 | 117 | 7 | 123 | 1.58e-39 | 133 |
| Msa0216530 | MtrunA17_Chr1g0184281 | 53.982 | 113 | 51 | 1 | 3 | 114 | 5 | 117 | 4.30e-39 | 131 |
| Msa0216530 | MtrunA17_Chr8g0353981 | 61.765 | 102 | 39 | 0 | 12 | 113 | 6 | 107 | 1.39e-38 | 130 |
| Msa0216530 | MtrunA17_Chr3g0097221 | 53.704 | 108 | 50 | 0 | 12 | 119 | 6 | 113 | 4.68e-38 | 131 |
| Msa0216530 | MtrunA17_Chr5g0444351 | 50.476 | 105 | 52 | 0 | 14 | 118 | 6 | 110 | 1.10e-37 | 126 |
| Msa0216530 | MtrunA17_Chr8g0351701 | 54.902 | 102 | 45 | 1 | 13 | 113 | 23 | 124 | 6.55e-36 | 124 |
| Msa0216530 | MtrunA17_Chr7g0245871 | 54.902 | 102 | 45 | 1 | 13 | 113 | 27 | 128 | 2.71e-35 | 122 |
| Msa0216530 | MtrunA17_Chr6g0460951 | 45.000 | 120 | 65 | 1 | 11 | 129 | 38 | 157 | 2.97e-35 | 122 |
| Msa0216530 | MtrunA17_Chr1g0184271 | 57.292 | 96 | 40 | 1 | 13 | 107 | 12 | 107 | 6.15e-34 | 119 |
| Msa0216530 | MtrunA17_Chr7g0261031 | 55.000 | 100 | 44 | 1 | 9 | 107 | 4 | 103 | 7.38e-34 | 118 |
| Msa0216530 | MtrunA17_Chr5g0435641 | 48.696 | 115 | 51 | 2 | 9 | 115 | 3 | 117 | 1.40e-33 | 117 |
| Msa0216530 | MtrunA17_Chr8g0374591 | 46.154 | 104 | 56 | 0 | 10 | 113 | 5 | 108 | 2.59e-30 | 107 |
| Msa0216530 | MtrunA17_Chr7g0245861 | 56.044 | 91 | 37 | 2 | 12 | 99 | 11 | 101 | 6.80e-30 | 106 |
| Msa0216530 | MtrunA17_Chr8g0374601 | 46.154 | 104 | 56 | 0 | 10 | 113 | 23 | 126 | 2.76e-29 | 108 |
| Msa0216530 | MtrunA17_Chr6g0452671 | 35.862 | 145 | 91 | 1 | 10 | 152 | 8 | 152 | 1.14e-28 | 104 |
| Msa0216530 | MtrunA17_Chr4g0059901 | 46.000 | 100 | 54 | 0 | 7 | 106 | 4 | 103 | 4.23e-28 | 105 |
| Msa0216530 | MtrunA17_Chr6g0452691 | 37.209 | 129 | 78 | 2 | 14 | 139 | 10 | 138 | 8.06e-27 | 99.8 |
| Msa0216530 | MtrunA17_Chr6g0460941 | 47.727 | 88 | 45 | 1 | 13 | 99 | 7 | 94 | 1.21e-26 | 96.3 |
| Msa0216530 | MtrunA17_Chr8g0374581 | 45.370 | 108 | 58 | 1 | 8 | 114 | 3 | 110 | 1.22e-26 | 100 |
| Msa0216530 | MtrunA17_Chr6g0452661 | 40.952 | 105 | 61 | 1 | 14 | 117 | 10 | 114 | 1.23e-26 | 100 |
| Msa0216530 | MtrunA17_Chr2g0326051 | 45.690 | 116 | 47 | 2 | 58 | 157 | 5 | 120 | 5.90e-26 | 95.5 |
| Msa0216530 | MtrunA17_Chr8g0342351 | 38.393 | 112 | 64 | 1 | 10 | 121 | 9 | 115 | 5.78e-25 | 96.7 |
| Msa0216530 | MtrunA17_Chr2g0330201 | 38.095 | 105 | 65 | 0 | 9 | 113 | 15 | 119 | 1.30e-24 | 96.7 |
| Msa0216530 | MtrunA17_Chr4g0055441 | 40.000 | 125 | 62 | 4 | 14 | 133 | 3 | 119 | 2.41e-24 | 92.4 |
| Msa0216530 | MtrunA17_Chr4g0040831 | 32.000 | 150 | 86 | 2 | 9 | 142 | 11 | 160 | 1.19e-22 | 89.4 |
| Msa0216530 | MtrunA17_Chr2g0326041 | 69.231 | 52 | 16 | 0 | 8 | 59 | 28 | 79 | 2.49e-22 | 85.1 |
| Msa0216530 | MtrunA17_Chr5g0439111 | 38.235 | 102 | 55 | 2 | 14 | 107 | 10 | 111 | 2.21e-19 | 81.3 |
| Msa0216530 | MtrunA17_Chr4g0046201 | 37.500 | 88 | 55 | 0 | 12 | 99 | 5 | 92 | 3.24e-18 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0216530 | AT1G31320.1 | 83.333 | 120 | 20 | 0 | 1 | 120 | 1 | 120 | 2.43e-65 | 197 |
| Msa0216530 | AT1G16530.1 | 57.988 | 169 | 55 | 6 | 1 | 158 | 1 | 164 | 6.89e-61 | 186 |
| Msa0216530 | AT2G30130.1 | 73.729 | 118 | 29 | 1 | 12 | 127 | 7 | 124 | 4.64e-59 | 182 |
| Msa0216530 | AT1G07900.1 | 66.667 | 111 | 37 | 0 | 10 | 120 | 30 | 140 | 1.23e-51 | 163 |
| Msa0216530 | AT2G28500.1 | 65.487 | 113 | 39 | 0 | 10 | 122 | 52 | 164 | 1.75e-50 | 161 |
| Msa0216530 | AT5G63090.4 | 66.355 | 107 | 36 | 0 | 12 | 118 | 10 | 116 | 2.21e-49 | 157 |
| Msa0216530 | AT5G63090.3 | 66.355 | 107 | 36 | 0 | 12 | 118 | 10 | 116 | 2.21e-49 | 157 |
| Msa0216530 | AT5G63090.2 | 66.355 | 107 | 36 | 0 | 12 | 118 | 10 | 116 | 2.21e-49 | 157 |
| Msa0216530 | AT5G63090.1 | 66.355 | 107 | 36 | 0 | 12 | 118 | 10 | 116 | 2.21e-49 | 157 |
| Msa0216530 | AT2G30340.1 | 57.143 | 119 | 51 | 0 | 5 | 123 | 44 | 162 | 5.47e-48 | 156 |
| Msa0216530 | AT2G30340.2 | 57.143 | 119 | 51 | 0 | 5 | 123 | 45 | 163 | 5.68e-48 | 156 |
| Msa0216530 | AT3G27650.1 | 63.810 | 105 | 38 | 0 | 10 | 114 | 36 | 140 | 2.92e-47 | 151 |
| Msa0216530 | AT2G40470.2 | 65.766 | 111 | 38 | 0 | 10 | 120 | 17 | 127 | 6.43e-46 | 149 |
| Msa0216530 | AT2G40470.1 | 65.766 | 111 | 38 | 0 | 10 | 120 | 42 | 152 | 1.64e-45 | 149 |
| Msa0216530 | AT3G26660.1 | 58.095 | 105 | 42 | 1 | 11 | 113 | 1 | 105 | 1.31e-42 | 138 |
| Msa0216530 | AT3G26620.1 | 58.095 | 105 | 42 | 1 | 11 | 113 | 1 | 105 | 2.05e-42 | 137 |
| Msa0216530 | AT2G23660.2 | 61.165 | 103 | 40 | 0 | 12 | 114 | 4 | 106 | 2.16e-42 | 143 |
| Msa0216530 | AT2G23660.3 | 61.165 | 103 | 40 | 0 | 12 | 114 | 4 | 106 | 2.16e-42 | 143 |
| Msa0216530 | AT2G23660.1 | 61.165 | 103 | 40 | 0 | 12 | 114 | 4 | 106 | 2.16e-42 | 143 |
| Msa0216530 | AT5G66870.1 | 62.745 | 102 | 38 | 0 | 12 | 113 | 6 | 107 | 5.58e-42 | 142 |
| Msa0216530 | AT2G42430.1 | 55.455 | 110 | 48 | 1 | 5 | 113 | 7 | 116 | 1.37e-40 | 137 |
| Msa0216530 | AT1G65620.1 | 64.423 | 104 | 37 | 0 | 10 | 113 | 6 | 109 | 5.50e-40 | 134 |
| Msa0216530 | AT1G65620.4 | 64.423 | 104 | 37 | 0 | 10 | 113 | 6 | 109 | 5.50e-40 | 134 |
| Msa0216530 | AT1G65620.3 | 64.423 | 104 | 37 | 0 | 10 | 113 | 6 | 109 | 5.50e-40 | 134 |
| Msa0216530 | AT1G65620.5 | 64.423 | 104 | 37 | 0 | 10 | 113 | 6 | 109 | 5.50e-40 | 134 |
| Msa0216530 | AT1G65620.2 | 64.423 | 104 | 37 | 0 | 10 | 113 | 6 | 109 | 5.50e-40 | 134 |
| Msa0216530 | AT3G11090.1 | 48.462 | 130 | 64 | 1 | 5 | 134 | 3 | 129 | 4.40e-39 | 130 |
| Msa0216530 | AT4G00210.1 | 51.938 | 129 | 53 | 2 | 5 | 132 | 3 | 123 | 7.11e-38 | 129 |
| Msa0216530 | AT2G45410.1 | 51.587 | 126 | 60 | 1 | 16 | 140 | 19 | 144 | 2.76e-37 | 127 |
| Msa0216530 | AT4G00220.1 | 55.769 | 104 | 45 | 1 | 16 | 118 | 20 | 123 | 9.65e-37 | 126 |
| Msa0216530 | AT3G03760.1 | 51.852 | 108 | 51 | 1 | 12 | 118 | 50 | 157 | 2.06e-36 | 127 |
| Msa0216530 | AT2G31310.1 | 53.333 | 105 | 48 | 1 | 9 | 112 | 3 | 107 | 2.63e-35 | 121 |
| Msa0216530 | AT2G42440.1 | 57.576 | 99 | 41 | 1 | 9 | 106 | 3 | 101 | 7.12e-35 | 122 |
| Msa0216530 | AT5G06080.1 | 56.250 | 96 | 41 | 1 | 12 | 106 | 6 | 101 | 9.31e-34 | 117 |
| Msa0216530 | AT2G45420.1 | 53.333 | 105 | 41 | 2 | 16 | 119 | 40 | 137 | 5.46e-33 | 117 |
| Msa0216530 | AT3G58190.1 | 55.789 | 95 | 41 | 1 | 13 | 106 | 11 | 105 | 1.73e-32 | 115 |
| Msa0216530 | AT3G50510.1 | 47.059 | 102 | 54 | 0 | 12 | 113 | 11 | 112 | 5.31e-29 | 105 |
| Msa0216530 | AT3G50510.2 | 47.059 | 102 | 54 | 0 | 12 | 113 | 11 | 112 | 5.31e-29 | 105 |
| Msa0216530 | AT1G72980.1 | 41.905 | 105 | 61 | 0 | 9 | 113 | 9 | 113 | 4.86e-28 | 103 |
| Msa0216530 | AT3G47870.1 | 41.121 | 107 | 63 | 0 | 7 | 113 | 30 | 136 | 9.58e-27 | 102 |
| Msa0216530 | AT3G13850.1 | 39.474 | 114 | 64 | 1 | 14 | 127 | 37 | 145 | 6.49e-26 | 99.8 |
| Msa0216530 | AT5G35900.1 | 42.000 | 100 | 58 | 0 | 14 | 113 | 6 | 105 | 3.48e-25 | 96.3 |
| Msa0216530 | AT1G06280.1 | 38.462 | 91 | 56 | 0 | 14 | 104 | 25 | 115 | 2.77e-20 | 83.6 |
| Msa0216530 | AT2G19820.1 | 38.542 | 96 | 58 | 1 | 12 | 106 | 11 | 106 | 2.36e-19 | 79.0 |
| Msa0216530 | AT5G15060.1 | 42.353 | 85 | 45 | 2 | 3 | 84 | 7 | 90 | 9.50e-17 | 72.8 |
| Msa0216530 | AT1G36000.1 | 31.868 | 91 | 62 | 0 | 9 | 99 | 5 | 95 | 1.69e-15 | 68.9 |
| Msa0216530 | AT4G22700.1 | 35.294 | 102 | 62 | 3 | 14 | 113 | 6 | 105 | 5.07e-15 | 69.3 |
| Msa0216530 | AT2G19510.1 | 28.571 | 98 | 70 | 0 | 9 | 106 | 5 | 102 | 2.33e-13 | 63.2 |
Find 39 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGATGAACCTCACAAATT+TGG | 0.273735 | 2_1:+62534669 | Msa0216530:CDS |
| GCATCACTTCGTTGATGTTC+TGG | 0.321179 | 2_1:-62538271 | None:intergenic |
| GGTTCATCAGCTGGAAAATA+TGG | 0.335863 | 2_1:-62534657 | None:intergenic |
| TTGTTGCTGCAGAGAGGATA+TGG | 0.347780 | 2_1:-62538359 | None:intergenic |
| CAATGTAAACAAAATGTTAC+AGG | 0.371309 | 2_1:+62534719 | Msa0216530:CDS |
| AAGAAAAGAACCTGCTTGAT+TGG | 0.406684 | 2_1:-62538507 | None:intergenic |
| CAAGGTCTTCCACGTTCTTA+CGG | 0.412173 | 2_1:+62538707 | Msa0216530:three_prime_UTR |
| ATGAAGCAAATGCAAGAGTA+AGG | 0.428990 | 2_1:+62538311 | Msa0216530:CDS |
| CTGCATGCAAGCTTCTTAGA+AGG | 0.457783 | 2_1:+62534607 | Msa0216530:CDS |
| GATGATGATCAGATGAGAAT+TGG | 0.476334 | 2_1:-62538444 | None:intergenic |
| CTTCCACGTTCTTACGGCCG+CGG | 0.500469 | 2_1:+62538713 | Msa0216530:three_prime_UTR |
| AATTTGTGAGGTTCATCAGC+TGG | 0.500821 | 2_1:-62534666 | None:intergenic |
| TTCCACGTTCTTACGGCCGC+GGG | 0.509288 | 2_1:+62538714 | Msa0216530:three_prime_UTR |
| TCACTCGAAATAAACTTTGA+CGG | 0.513514 | 2_1:+62538667 | Msa0216530:three_prime_UTR |
| AAAATGTCACATTTGATCTA+CGG | 0.519282 | 2_1:+62538626 | Msa0216530:three_prime_UTR |
| AGAGTAAGGGATCCTGTGTA+TGG | 0.521523 | 2_1:+62538325 | Msa0216530:CDS |
| ATAAACTTTGACGGCACCGA+TGG | 0.523973 | 2_1:+62538676 | Msa0216530:three_prime_UTR |
| CAAATTTGGCAGTGTCCACA+AGG | 0.525604 | 2_1:+62534683 | Msa0216530:CDS |
| AAGTGATGCAGTTAGTTCAA+TGG | 0.533555 | 2_1:+62538285 | Msa0216530:CDS |
| CGTAAGAACGTGGAAGACCT+TGG | 0.560382 | 2_1:-62538706 | None:intergenic |
| TGAAGCAAATGCAAGAGTAA+GGG | 0.570272 | 2_1:+62538312 | Msa0216530:CDS |
| AAAATGTGTACCAATCAAGC+AGG | 0.584103 | 2_1:+62538497 | Msa0216530:CDS |
| AATTGGAGGAACATGAAGGA+TGG | 0.589346 | 2_1:+62534552 | None:intergenic |
| AGAAGCTTGCATGCAGCACA+TGG | 0.590179 | 2_1:-62534600 | None:intergenic |
| CTCCCGCGGCCGTAAGAACG+TGG | 0.591092 | 2_1:-62538716 | None:intergenic |
| GGATCCTGTGTATGGATGTG+TGG | 0.591101 | 2_1:+62538333 | Msa0216530:CDS |
| TGGAGGAACATGAAGGATGG+TGG | 0.593577 | 2_1:+62534555 | None:intergenic |
| GCACCGATGGTATATTGCCA+AGG | 0.625221 | 2_1:+62538689 | Msa0216530:three_prime_UTR |
| AAGGATGGTGGTAGAAAACA+AGG | 0.626109 | 2_1:+62534567 | Msa0216530:CDS |
| AGCTAGCTAGTAAGACCACA+AGG | 0.627089 | 2_1:-62538551 | None:intergenic |
| GATCCTGTGTATGGATGTGT+GGG | 0.634230 | 2_1:+62538334 | Msa0216530:CDS |
| AGACCTTGGCAATATACCAT+CGG | 0.638285 | 2_1:-62538692 | None:intergenic |
| ATTAGCTCAAGCACAAGCAG+AGG | 0.644995 | 2_1:+62538402 | Msa0216530:CDS |
| TGGACACTGCCAAATTTGTG+AGG | 0.657276 | 2_1:-62534678 | None:intergenic |
| GATGGTGGTGACGAATTCGA+TGG | 0.671990 | 2_1:-62538472 | None:intergenic |
| ATCTACTTGTTGCTGCAGAG+AGG | 0.672706 | 2_1:-62538365 | None:intergenic |
| ACAAAATGGGACAATCCTTG+TGG | 0.674959 | 2_1:+62538536 | Msa0216530:CDS |
| GGTGGTGACGAATTCGATGG+TGG | 0.676502 | 2_1:-62538469 | None:intergenic |
| GCTCCCACACATCCATACAC+AGG | 0.678138 | 2_1:-62538337 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAAAATAAATTAATTA+AGG | - | chr2_1:62535364-62535383 | None:intergenic | 0.0% |
| !! | TAATTAAAAAAAGAGTTATT+AGG | + | chr2_1:62535144-62535163 | Msa0216530:intron | 10.0% |
| !! | AATTAAAAAAAGAGTTATTA+GGG | + | chr2_1:62535145-62535164 | Msa0216530:intron | 10.0% |
| !!! | AAACATTAAAAATATTTTGT+TGG | - | chr2_1:62536246-62536265 | None:intergenic | 10.0% |
| !! | TATTTAATATGGTATAATTT+GGG | + | chr2_1:62537297-62537316 | Msa0216530:intron | 10.0% |
| !!! | TTTTAAAAATTGATACTATT+CGG | + | chr2_1:62537586-62537605 | Msa0216530:intron | 10.0% |
| !!! | ATTTAAGTTAATTTATTAAG+AGG | + | chr2_1:62537752-62537771 | Msa0216530:intron | 10.0% |
| !! | ATTGAATATAATTGAATGAT+GGG | + | chr2_1:62536132-62536151 | Msa0216530:intron | 15.0% |
| !! | GTATTTAATATGGTATAATT+TGG | + | chr2_1:62537296-62537315 | Msa0216530:intron | 15.0% |
| !! | ATTTAATATGGTATAATTTG+GGG | + | chr2_1:62537298-62537317 | Msa0216530:intron | 15.0% |
| !!! | ACATCAAATTTCAAATTTTA+AGG | - | chr2_1:62538079-62538098 | None:intergenic | 15.0% |
| !!! | TGTAATTTCGACATTTTTAT+CGG | - | chr2_1:62535442-62535461 | None:intergenic | 20.0% |
| !! | ATAAAAATGTCGAAATTACA+AGG | + | chr2_1:62535442-62535461 | Msa0216530:intron | 20.0% |
| !!! | AATGACACATTTTAATAACA+CGG | + | chr2_1:62535645-62535664 | Msa0216530:intron | 20.0% |
| !! | AATTTCATCCAATAAAAATC+AGG | + | chr2_1:62535699-62535718 | Msa0216530:intron | 20.0% |
| !! | ATTTCATCCAATAAAAATCA+GGG | + | chr2_1:62535700-62535719 | Msa0216530:intron | 20.0% |
| !!! | ATTTTACAAGTTACTTTGTA+GGG | + | chr2_1:62535868-62535887 | Msa0216530:intron | 20.0% |
| !! | CTAATTTCAGAAAATATGTT+TGG | + | chr2_1:62536015-62536034 | Msa0216530:intron | 20.0% |
| !! | CATTGAATATAATTGAATGA+TGG | + | chr2_1:62536131-62536150 | Msa0216530:intron | 20.0% |
| !! | AAACTAGTCAAGTAAATTTA+CGG | - | chr2_1:62536330-62536349 | None:intergenic | 20.0% |
| !! | TTTCTCTCATATAATTTATG+TGG | + | chr2_1:62536488-62536507 | Msa0216530:intron | 20.0% |
| !! | TCATTTAATTAACTTCATCA+TGG | + | chr2_1:62536513-62536532 | Msa0216530:intron | 20.0% |
| !! | CAATGATGACATATATATAT+TGG | + | chr2_1:62537196-62537215 | Msa0216530:intron | 20.0% |
| !! | ATATTAAATACAACCCTAAA+GGG | - | chr2_1:62537287-62537306 | None:intergenic | 20.0% |
| !!! | AAGTTGGTTATTTTTGAAAA+GGG | - | chr2_1:62537441-62537460 | None:intergenic | 20.0% |
| !! | TAAGTTAATTTATTAAGAGG+AGG | + | chr2_1:62537755-62537774 | Msa0216530:intron | 20.0% |
| !! | TTATGTAGAAGTTTCATATT+TGG | - | chr2_1:62537810-62537829 | None:intergenic | 20.0% |
| !! | CATAGTCAAATAGTATATAT+GGG | - | chr2_1:62537852-62537871 | None:intergenic | 20.0% |
| !! | TATTAACCCTAAACTTAATT+CGG | - | chr2_1:62537920-62537939 | None:intergenic | 20.0% |
| !!! | TTTCAAGATTCTTTGATTTT+TGG | + | chr2_1:62537971-62537990 | Msa0216530:intron | 20.0% |
| !! | GCTTATACATATAAACTTAA+AGG | - | chr2_1:62538215-62538234 | None:intergenic | 20.0% |
| ! | CAATGTAAACAAAATGTTAC+AGG | + | chr2_1:62534719-62534738 | Msa0216530:CDS | 25.0% |
| ! | TGATAGAGATATGAAAGATT+AGG | - | chr2_1:62534764-62534783 | None:intergenic | 25.0% |
| ! | AAAATTCTCATGAAAACGAT+TGG | - | chr2_1:62534805-62534824 | None:intergenic | 25.0% |
| !! | TTTAATAACAAATGCTGACT+TGG | - | chr2_1:62534849-62534868 | None:intergenic | 25.0% |
| !! | AAAGGTCTTATATATAGAGA+CGG | + | chr2_1:62535033-62535052 | Msa0216530:intron | 25.0% |
| !!! | TTTTCATATTCTAAGACAAG+TGG | + | chr2_1:62535103-62535122 | Msa0216530:intron | 25.0% |
| ! | AAATGATCTTATATAGACGA+AGG | + | chr2_1:62535217-62535236 | Msa0216530:intron | 25.0% |
| ! | AATGATCTTATATAGACGAA+GGG | + | chr2_1:62535218-62535237 | Msa0216530:intron | 25.0% |
| ! | AGGTTTCACATAAACATATT+AGG | - | chr2_1:62535270-62535289 | None:intergenic | 25.0% |
| ! | TATAATCAGATGAAAGAAGT+AGG | - | chr2_1:62535290-62535309 | None:intergenic | 25.0% |
| ! | TAAAAATTGACACACAAATG+TGG | - | chr2_1:62535504-62535523 | None:intergenic | 25.0% |
| !! | ACAAAGTAACTTGTAAAATG+CGG | - | chr2_1:62535867-62535886 | None:intergenic | 25.0% |
| !!! | CATTTTACAAGTTACTTTGT+AGG | + | chr2_1:62535867-62535886 | Msa0216530:intron | 25.0% |
| !!! | TTTTACAAGTTACTTTGTAG+GGG | + | chr2_1:62535869-62535888 | Msa0216530:intron | 25.0% |
| ! | TAATATTTGTACCAAAACCA+GGG | + | chr2_1:62535917-62535936 | Msa0216530:intron | 25.0% |
| !! | TTTGGTACCTGAAATTTTAT+TGG | + | chr2_1:62536033-62536052 | Msa0216530:intron | 25.0% |
| ! | CTTCTATCCAATAAAATTTC+AGG | - | chr2_1:62536043-62536062 | None:intergenic | 25.0% |
| !! | AATATAATTGAATGATGGGA+TGG | + | chr2_1:62536136-62536155 | Msa0216530:intron | 25.0% |
| ! | TTGTTGGATGAGAAAAAAAA+GGG | - | chr2_1:62536230-62536249 | None:intergenic | 25.0% |
| ! | TTTGTTGGATGAGAAAAAAA+AGG | - | chr2_1:62536231-62536250 | None:intergenic | 25.0% |
| ! | AGTGTTCAAGAAAAGTTAAA+AGG | + | chr2_1:62536592-62536611 | Msa0216530:intron | 25.0% |
| !! | ATTAACTTGATCTGTTATAG+TGG | + | chr2_1:62536640-62536659 | Msa0216530:intron | 25.0% |
| ! | CATTATATATAAGAGCTGTA+GGG | - | chr2_1:62536687-62536706 | None:intergenic | 25.0% |
| ! | TCATTATATATAAGAGCTGT+AGG | - | chr2_1:62536688-62536707 | None:intergenic | 25.0% |
| ! | TATCTTTGTTAAAGCAACTA+AGG | + | chr2_1:62536715-62536734 | Msa0216530:intron | 25.0% |
| ! | AGAGATATTGTTGAACAAAT+TGG | - | chr2_1:62536933-62536952 | None:intergenic | 25.0% |
| !! | TTCTCTTGCAATGATATTTT+AGG | + | chr2_1:62536991-62537010 | Msa0216530:intron | 25.0% |
| !! | TCTCTTGCAATGATATTTTA+GGG | + | chr2_1:62536992-62537011 | Msa0216530:intron | 25.0% |
| !! | ATTCTAAAGACAAAAGGAAA+AGG | - | chr2_1:62537050-62537069 | None:intergenic | 25.0% |
| !!! | TGTGATATCAACATCTTTTT+TGG | - | chr2_1:62537108-62537127 | None:intergenic | 25.0% |
| ! | CATATTAAATACAACCCTAA+AGG | - | chr2_1:62537288-62537307 | None:intergenic | 25.0% |
| !!! | CTTTAGGGTTGTATTTAATA+TGG | + | chr2_1:62537286-62537305 | Msa0216530:intron | 25.0% |
| ! | ATATATACGTATTTAGTCAC+TGG | + | chr2_1:62537391-62537410 | Msa0216530:intron | 25.0% |
| !!! | AGTTGGTTATTTTTGAAAAG+GGG | - | chr2_1:62537440-62537459 | None:intergenic | 25.0% |
| !!! | GAAGTTGGTTATTTTTGAAA+AGG | - | chr2_1:62537442-62537461 | None:intergenic | 25.0% |
| ! | AATTGATACTATTCGGTATA+AGG | + | chr2_1:62537593-62537612 | Msa0216530:intron | 25.0% |
| ! | TCAAATAGTATATATGGGTT+TGG | - | chr2_1:62537847-62537866 | None:intergenic | 25.0% |
| ! | GCATAGTCAAATAGTATATA+TGG | - | chr2_1:62537853-62537872 | None:intergenic | 25.0% |
| ! | TATACTATTTGACTATGCAT+TGG | + | chr2_1:62537855-62537874 | Msa0216530:intron | 25.0% |
| ! | TGTACAGTCAAAATTCATAA+AGG | - | chr2_1:62537998-62538017 | None:intergenic | 25.0% |
| ! | TAAGCGACATTCTAATTATT+TGG | + | chr2_1:62538230-62538249 | Msa0216530:intron | 25.0% |
| ! | TTCTAATTATTTGGTCCAAT+TGG | + | chr2_1:62538239-62538258 | Msa0216530:intron | 25.0% |
| !! | TTTTCTTCACCAAACAAAAT+GGG | + | chr2_1:62538523-62538542 | Msa0216530:CDS | 25.0% |
| ! | AAAATGTCACATTTGATCTA+CGG | + | chr2_1:62538626-62538645 | Msa0216530:three_prime_UTR | 25.0% |
| ATGAAAACGATTGGAATATC+AGG | - | chr2_1:62534796-62534815 | None:intergenic | 30.0% | |
| ! | TCGTTTTCATGAGAATTTTG+TGG | + | chr2_1:62534806-62534825 | Msa0216530:intron | 30.0% |
| ! | AGACCTTTTTGCTAAAATCA+CGG | - | chr2_1:62535021-62535040 | None:intergenic | 30.0% |
| AAATGTCGAAATTACAAGGT+CGG | + | chr2_1:62535446-62535465 | Msa0216530:intron | 30.0% | |
| !! | ACACATTTTAATAACACGGA+GGG | + | chr2_1:62535649-62535668 | Msa0216530:intron | 30.0% |
| ! | TTTAACGCCCTGATTTTTAT+TGG | - | chr2_1:62535710-62535729 | None:intergenic | 30.0% |
| !!! | CTTCTCTACGTTTTTTTCAT+GGG | - | chr2_1:62535770-62535789 | None:intergenic | 30.0% |
| !!! | TCTTCTCTACGTTTTTTTCA+TGG | - | chr2_1:62535771-62535790 | None:intergenic | 30.0% |
| CTAATATTTGTACCAAAACC+AGG | + | chr2_1:62535916-62535935 | Msa0216530:intron | 30.0% | |
| TTAATAACCATATGCATGAG+TGG | + | chr2_1:62535978-62535997 | Msa0216530:intron | 30.0% | |
| AATTATACCACTCATGCATA+TGG | - | chr2_1:62535988-62536007 | None:intergenic | 30.0% | |
| TATGCATGAGTGGTATAATT+AGG | + | chr2_1:62535988-62536007 | Msa0216530:intron | 30.0% | |
| !! | GGTTAGTTACAGTTGATAAT+TGG | + | chr2_1:62536661-62536680 | Msa0216530:intron | 30.0% |
| TTAGCACAAAAAAAAGACCA+AGG | + | chr2_1:62536788-62536807 | Msa0216530:intron | 30.0% | |
| TCTTAAATTCACACTTAGTG+TGG | - | chr2_1:62536849-62536868 | None:intergenic | 30.0% | |
| ACACTAAGTGTGAATTTAAG+AGG | + | chr2_1:62536848-62536867 | Msa0216530:intron | 30.0% | |
| !!! | TTCCTTTTGTCTTTAGAATC+AGG | + | chr2_1:62537051-62537070 | Msa0216530:intron | 30.0% |
| !!! | TCCTTTTGTCTTTAGAATCA+GGG | + | chr2_1:62537052-62537071 | Msa0216530:intron | 30.0% |
| ! | TAAAGGGTTTGATAACAGAA+AGG | - | chr2_1:62537271-62537290 | None:intergenic | 30.0% |
| TTTCTGTTATCAAACCCTTT+AGG | + | chr2_1:62537270-62537289 | Msa0216530:intron | 30.0% | |
| TTCTGTTATCAAACCCTTTA+GGG | + | chr2_1:62537271-62537290 | Msa0216530:intron | 30.0% | |
| !!! | TTGGTTATTTTTGAAAAGGG+GGG | - | chr2_1:62537438-62537457 | None:intergenic | 30.0% |
| !!! | GTTGGTTATTTTTGAAAAGG+GGG | - | chr2_1:62537439-62537458 | None:intergenic | 30.0% |
| TTGAAATCTGTAAGTAGTTG+TGG | - | chr2_1:62537515-62537534 | None:intergenic | 30.0% | |
| ACAGTAACCGAATTAAGTTT+AGG | + | chr2_1:62537910-62537929 | Msa0216530:intron | 30.0% | |
| CAGTAACCGAATTAAGTTTA+GGG | + | chr2_1:62537911-62537930 | Msa0216530:intron | 30.0% | |
| GAATCTTGAAATTGCAAGAT+TGG | - | chr2_1:62537962-62537981 | None:intergenic | 30.0% | |
| TACAACATCGATGATATAGT+AGG | + | chr2_1:62538014-62538033 | Msa0216530:intron | 30.0% | |
| ACAACATCGATGATATAGTA+GGG | + | chr2_1:62538015-62538034 | Msa0216530:intron | 30.0% | |
| !! | ATTTGAAGGTTCTTTGGTTT+TGG | - | chr2_1:62538111-62538130 | None:intergenic | 30.0% |
| ! | CTTTTCTTCACCAAACAAAA+TGG | + | chr2_1:62538522-62538541 | Msa0216530:CDS | 30.0% |
| TCACTCGAAATAAACTTTGA+CGG | + | chr2_1:62538667-62538686 | Msa0216530:three_prime_UTR | 30.0% | |
| !! | TTCCCGTGATTTTAGCAAAA+AGG | + | chr2_1:62535015-62535034 | Msa0216530:intron | 35.0% |
| ! | GACCTTTTTGCTAAAATCAC+GGG | - | chr2_1:62535020-62535039 | None:intergenic | 35.0% |
| AAATTGACACACAAATGTGG+AGG | - | chr2_1:62535501-62535520 | None:intergenic | 35.0% | |
| !!! | TGTGACTAGTTTTAAGAAGC+TGG | - | chr2_1:62535620-62535639 | None:intergenic | 35.0% |
| !! | GACACATTTTAATAACACGG+AGG | + | chr2_1:62535648-62535667 | Msa0216530:intron | 35.0% |
| AGTTGTAAGTGTCATCTTGT+TGG | + | chr2_1:62535793-62535812 | Msa0216530:intron | 35.0% | |
| TAAGTGTCATCTTGTTGGAT+AGG | + | chr2_1:62535798-62535817 | Msa0216530:intron | 35.0% | |
| ! | TGCGGATTAATACTAAAGCT+GGG | - | chr2_1:62535849-62535868 | None:intergenic | 35.0% |
| ! | ATGCGGATTAATACTAAAGC+TGG | - | chr2_1:62535850-62535869 | None:intergenic | 35.0% |
| ACCAAAACCAGGGTATAATT+AGG | + | chr2_1:62535927-62535946 | Msa0216530:intron | 35.0% | |
| ! | ACCTAATTATACCCTGGTTT+TGG | - | chr2_1:62535931-62535950 | None:intergenic | 35.0% |
| CCTTATACCTAATTATACCC+TGG | - | chr2_1:62535937-62535956 | None:intergenic | 35.0% | |
| CCAGGGTATAATTAGGTATA+AGG | + | chr2_1:62535934-62535953 | Msa0216530:intron | 35.0% | |
| CAAAAAAAAGACCAAGGATC+AGG | + | chr2_1:62536794-62536813 | Msa0216530:intron | 35.0% | |
| ATTTATATGCACCTGATCCT+TGG | - | chr2_1:62536808-62536827 | None:intergenic | 35.0% | |
| AGTGTGGTTTCATGTAGTAA+AGG | - | chr2_1:62536833-62536852 | None:intergenic | 35.0% | |
| ATTGTTAGCTGCATCATTAC+TGG | + | chr2_1:62536894-62536913 | Msa0216530:intron | 35.0% | |
| ! | ACCCTGATTCTAAAGACAAA+AGG | - | chr2_1:62537056-62537075 | None:intergenic | 35.0% |
| !!! | TTATTTTTGAAAAGGGGGGA+TGG | - | chr2_1:62537434-62537453 | None:intergenic | 35.0% |
| ATAGTCAAAAGGAGACGATA+AGG | - | chr2_1:62537473-62537492 | None:intergenic | 35.0% | |
| TCTGTAAGTAGTTGTGGATA+TGG | - | chr2_1:62537509-62537528 | None:intergenic | 35.0% | |
| CAACATCGATGATATAGTAG+GGG | + | chr2_1:62538016-62538035 | Msa0216530:intron | 35.0% | |
| AACATCGATGATATAGTAGG+GGG | + | chr2_1:62538017-62538036 | Msa0216530:intron | 35.0% | |
| CAAAGAACCTTCAAATGACA+GGG | + | chr2_1:62538115-62538134 | Msa0216530:intron | 35.0% | |
| ! | ATTTGAACCCTGTCATTTGA+AGG | - | chr2_1:62538125-62538144 | None:intergenic | 35.0% |
| GTTTACTCCTGTTATATTCG+CGG | - | chr2_1:62538183-62538202 | None:intergenic | 35.0% | |
| AATTATTTGGTCCAATTGGC+AGG | + | chr2_1:62538243-62538262 | Msa0216530:intron | 35.0% | |
| AAGTGATGCAGTTAGTTCAA+TGG | + | chr2_1:62538285-62538304 | Msa0216530:CDS | 35.0% | |
| ATGAAGCAAATGCAAGAGTA+AGG | + | chr2_1:62538311-62538330 | Msa0216530:CDS | 35.0% | |
| TGAAGCAAATGCAAGAGTAA+GGG | + | chr2_1:62538312-62538331 | Msa0216530:CDS | 35.0% | |
| GATGATGATCAGATGAGAAT+TGG | - | chr2_1:62538447-62538466 | None:intergenic | 35.0% | |
| ! | GATTGGTACACATTTTCTGA+TGG | - | chr2_1:62538493-62538512 | None:intergenic | 35.0% |
| AAAATGTGTACCAATCAAGC+AGG | + | chr2_1:62538497-62538516 | Msa0216530:CDS | 35.0% | |
| AAGAAAAGAACCTGCTTGAT+TGG | - | chr2_1:62538510-62538529 | None:intergenic | 35.0% | |
| ! | AAGGATTGTCCCATTTTGTT+TGG | - | chr2_1:62538535-62538554 | None:intergenic | 35.0% |
| TAGTGTAAAAAGCCATTGCT+AGG | + | chr2_1:62538598-62538617 | Msa0216530:three_prime_UTR | 35.0% | |
| AGTGTAAAAAGCCATTGCTA+GGG | + | chr2_1:62538599-62538618 | Msa0216530:three_prime_UTR | 35.0% | |
| !! | ACATTTTTCAACCCTAGCAA+TGG | - | chr2_1:62538613-62538632 | None:intergenic | 35.0% |
| !!! | TTCGAGTGATTTTCAAGTGT+CGG | - | chr2_1:62538656-62538675 | None:intergenic | 35.0% |
| ! | AAGGATGGTGGTAGAAAACA+AGG | + | chr2_1:62534567-62534586 | Msa0216530:CDS | 40.0% |
| GGTTCATCAGCTGGAAAATA+TGG | - | chr2_1:62534660-62534679 | None:intergenic | 40.0% | |
| AATTTGTGAGGTTCATCAGC+TGG | - | chr2_1:62534669-62534688 | None:intergenic | 40.0% | |
| GCTGATGAACCTCACAAATT+TGG | + | chr2_1:62534669-62534688 | Msa0216530:CDS | 40.0% | |
| ! | GGTCTTATATATAGAGACGG+AGG | + | chr2_1:62535036-62535055 | Msa0216530:intron | 40.0% |
| TGTGACTACGGTTTCAACTT+CGG | + | chr2_1:62535473-62535492 | Msa0216530:intron | 40.0% | |
| ACAGAAAGGTGGATAACTGA+GGG | - | chr2_1:62537257-62537276 | None:intergenic | 40.0% | |
| AACAGAAAGGTGGATAACTG+AGG | - | chr2_1:62537258-62537277 | None:intergenic | 40.0% | |
| ! | AGGGTTTGATAACAGAAAGG+TGG | - | chr2_1:62537268-62537287 | None:intergenic | 40.0% |
| GATAAGGTAGATGCTGAAGT+TGG | - | chr2_1:62537457-62537476 | None:intergenic | 40.0% | |
| !! | GTCTCCTTTTGACTATGCAT+GGG | + | chr2_1:62537477-62537496 | Msa0216530:intron | 40.0% |
| AGATCCCATGCATAGTCAAA+AGG | - | chr2_1:62537484-62537503 | None:intergenic | 40.0% | |
| !! | TTTTGACTATGCATGGGATC+TGG | + | chr2_1:62537483-62537502 | Msa0216530:intron | 40.0% |
| ! | CTCCATTTAAAGCCACAACA+AGG | + | chr2_1:62537657-62537676 | Msa0216530:intron | 40.0% |
| !! | AGCCTTGTTGTGGCTTTAAA+TGG | - | chr2_1:62537662-62537681 | None:intergenic | 40.0% |
| TACGACAAGTCAACCCAAAT+TGG | + | chr2_1:62537685-62537704 | Msa0216530:intron | 40.0% | |
| ATCCACTCAAGTTAACACGA+TGG | - | chr2_1:62537734-62537753 | None:intergenic | 40.0% | |
| TATATGGGTTTGGACACACA+AGG | - | chr2_1:62537837-62537856 | None:intergenic | 40.0% | |
| ACCGAATTCGCTCAAATTAC+AGG | + | chr2_1:62538043-62538062 | Msa0216530:intron | 40.0% | |
| CCCTGTAATTTGAGCGAATT+CGG | - | chr2_1:62538047-62538066 | None:intergenic | 40.0% | |
| CCGAATTCGCTCAAATTACA+GGG | + | chr2_1:62538044-62538063 | Msa0216530:intron | 40.0% | |
| CGAATTCGCTCAAATTACAG+GGG | + | chr2_1:62538045-62538064 | Msa0216530:intron | 40.0% | |
| ! | CCTGTCATTTGAAGGTTCTT+TGG | - | chr2_1:62538117-62538136 | None:intergenic | 40.0% |
| CCAAAGAACCTTCAAATGAC+AGG | + | chr2_1:62538114-62538133 | Msa0216530:intron | 40.0% | |
| ! | CCTGTTATATTCGCGGTTTT+TGG | - | chr2_1:62538176-62538195 | None:intergenic | 40.0% |
| CCAAAAACCGCGAATATAAC+AGG | + | chr2_1:62538173-62538192 | Msa0216530:intron | 40.0% | |
| ! | TGGTACACATTTTCTGATGG+TGG | - | chr2_1:62538490-62538509 | None:intergenic | 40.0% |
| ACAAAATGGGACAATCCTTG+TGG | + | chr2_1:62538536-62538555 | Msa0216530:CDS | 40.0% | |
| AGACCTTGGCAATATACCAT+CGG | - | chr2_1:62538695-62538714 | None:intergenic | 40.0% | |
| CTGCATGCAAGCTTCTTAGA+AGG | + | chr2_1:62534607-62534626 | Msa0216530:CDS | 45.0% | |
| TGGACACTGCCAAATTTGTG+AGG | - | chr2_1:62534681-62534700 | None:intergenic | 45.0% | |
| CAAATTTGGCAGTGTCCACA+AGG | + | chr2_1:62534683-62534702 | Msa0216530:CDS | 45.0% | |
| ! | GCAGTGTCCACAAGGTTTTT+GGG | + | chr2_1:62534691-62534710 | Msa0216530:CDS | 45.0% |
| ! | CAGTGTCCACAAGGTTTTTG+GGG | + | chr2_1:62534692-62534711 | Msa0216530:CDS | 45.0% |
| ! | ACGGAGGGAGTACATGATTT+AGG | + | chr2_1:62535664-62535683 | Msa0216530:intron | 45.0% |
| GTTAGCTGCATCATTACTGG+TGG | + | chr2_1:62536897-62536916 | Msa0216530:intron | 45.0% | |
| CTTTATGACCAACGCATGCA+TGG | + | chr2_1:62536953-62536972 | Msa0216530:intron | 45.0% | |
| ATGAAAAGCCATGCATGCGT+TGG | - | chr2_1:62536964-62536983 | None:intergenic | 45.0% | |
| ! | GCATGCATGGCTTTTCATCT+TGG | + | chr2_1:62536966-62536985 | Msa0216530:intron | 45.0% |
| CAGAAAGGTGGATAACTGAG+GGG | - | chr2_1:62537256-62537275 | None:intergenic | 45.0% | |
| !! | CGTCTCCTTTTGACTATGCA+TGG | + | chr2_1:62537476-62537495 | Msa0216530:intron | 45.0% |
| !! | TGTCGTACAAAGCCTTGTTG+TGG | - | chr2_1:62537672-62537691 | None:intergenic | 45.0% |
| ! | AGATCTTGCGGTGCCAATTT+GGG | - | chr2_1:62537701-62537720 | None:intergenic | 45.0% |
| TCAAGTTAACACGATGGTGC+TGG | - | chr2_1:62537728-62537747 | None:intergenic | 45.0% | |
| ! | CACCATCGTGTTAACTTGAG+TGG | + | chr2_1:62537729-62537748 | Msa0216530:intron | 45.0% |
| TTCTGGTAGTTCCTGCCAAT+TGG | - | chr2_1:62538257-62538276 | None:intergenic | 45.0% | |
| GCATCACTTCGTTGATGTTC+TGG | - | chr2_1:62538274-62538293 | None:intergenic | 45.0% | |
| AGAGTAAGGGATCCTGTGTA+TGG | + | chr2_1:62538325-62538344 | Msa0216530:CDS | 45.0% | |
| GATCCTGTGTATGGATGTGT+GGG | + | chr2_1:62538334-62538353 | Msa0216530:CDS | 45.0% | |
| TTGTTGCTGCAGAGAGGATA+TGG | - | chr2_1:62538362-62538381 | None:intergenic | 45.0% | |
| ! | ATCTACTTGTTGCTGCAGAG+AGG | - | chr2_1:62538368-62538387 | None:intergenic | 45.0% |
| ATTAGCTCAAGCACAAGCAG+AGG | + | chr2_1:62538402-62538421 | Msa0216530:CDS | 45.0% | |
| AGCTAGCTAGTAAGACCACA+AGG | - | chr2_1:62538554-62538573 | None:intergenic | 45.0% | |
| ! | ATAAACTTTGACGGCACCGA+TGG | + | chr2_1:62538676-62538695 | Msa0216530:three_prime_UTR | 45.0% |
| CAAGGTCTTCCACGTTCTTA+CGG | + | chr2_1:62538707-62538726 | Msa0216530:three_prime_UTR | 45.0% | |
| AGAAGCTTGCATGCAGCACA+TGG | - | chr2_1:62534603-62534622 | None:intergenic | 50.0% | |
| ! | GGCAGTGTCCACAAGGTTTT+TGG | + | chr2_1:62534690-62534709 | Msa0216530:CDS | 50.0% |
| TGCTAGCCCCAAAAACCTTG+TGG | - | chr2_1:62534701-62534720 | None:intergenic | 50.0% | |
| AAGGTCGGACGATGTGACTA+CGG | + | chr2_1:62535461-62535480 | Msa0216530:intron | 50.0% | |
| TTAAATGGAGTCCCCGCAAG+TGG | - | chr2_1:62537647-62537666 | None:intergenic | 50.0% | |
| ! | GAGATCTTGCGGTGCCAATT+TGG | - | chr2_1:62537702-62537721 | None:intergenic | 50.0% |
| !! | GGTGCTGGTTTGAGATCTTG+CGG | - | chr2_1:62537713-62537732 | None:intergenic | 50.0% |
| GGATCCTGTGTATGGATGTG+TGG | + | chr2_1:62538333-62538352 | Msa0216530:CDS | 50.0% | |
| ! | GATGGTGGTGACGAATTCGA+TGG | - | chr2_1:62538475-62538494 | None:intergenic | 50.0% |
| ! | GCACCGATGGTATATTGCCA+AGG | + | chr2_1:62538689-62538708 | Msa0216530:three_prime_UTR | 50.0% |
| CGTAAGAACGTGGAAGACCT+TGG | - | chr2_1:62538709-62538728 | None:intergenic | 50.0% | |
| GCTCCCACACATCCATACAC+AGG | - | chr2_1:62538340-62538359 | None:intergenic | 55.0% | |
| ! | GGTGGTGACGAATTCGATGG+TGG | - | chr2_1:62538472-62538491 | None:intergenic | 55.0% |
| ATGGAGTCCCCGCAAGTGGA+CGG | - | chr2_1:62537643-62537662 | None:intergenic | 60.0% | |
| CTGACCTCGCCGTCCACTTG+CGG | + | chr2_1:62537631-62537650 | Msa0216530:intron | 65.0% | |
| TGACCTCGCCGTCCACTTGC+GGG | + | chr2_1:62537632-62537651 | Msa0216530:intron | 65.0% | |
| GACCTCGCCGTCCACTTGCG+GGG | + | chr2_1:62537633-62537652 | Msa0216530:intron | 70.0% | |
| GTCCCCGCAAGTGGACGGCG+AGG | - | chr2_1:62537638-62537657 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 62534556 | 62538735 | 62534556 | ID=Msa0216530;Name=Msa0216530 |
| chr2_1 | mRNA | 62534556 | 62538735 | 62534556 | ID=Msa0216530-mRNA-1;Parent=Msa0216530;Name=Msa0216530-mRNA-1;_AED=0.01;_eAED=0.01;_QI=8|1|1|1|1|1|2|168|159 |
| chr2_1 | exon | 62534556 | 62534740 | 62534556 | ID=Msa0216530-mRNA-1:exon:17286;Parent=Msa0216530-mRNA-1 |
| chr2_1 | exon | 62538265 | 62538735 | 62538265 | ID=Msa0216530-mRNA-1:exon:17287;Parent=Msa0216530-mRNA-1 |
| chr2_1 | five_prime_UTR | 62534556 | 62534563 | 62534556 | ID=Msa0216530-mRNA-1:five_prime_utr;Parent=Msa0216530-mRNA-1 |
| chr2_1 | CDS | 62534564 | 62534740 | 62534564 | ID=Msa0216530-mRNA-1:cds;Parent=Msa0216530-mRNA-1 |
| chr2_1 | CDS | 62538265 | 62538567 | 62538265 | ID=Msa0216530-mRNA-1:cds;Parent=Msa0216530-mRNA-1 |
| chr2_1 | three_prime_UTR | 62538568 | 62538735 | 62538568 | ID=Msa0216530-mRNA-1:three_prime_utr;Parent=Msa0216530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
