Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0292250 | KEH38386.1 | 96.226 | 106 | 4 | 0 | 1 | 106 | 1 | 106 | 5.28e-69 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0292250 | sp|Q8GYM1|GSTUM_ARATH | 70.755 | 106 | 31 | 0 | 1 | 106 | 1 | 106 | 2.35e-53 | 169 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0292250 | A0A072V9X8 | 96.226 | 106 | 4 | 0 | 1 | 106 | 1 | 106 | 2.52e-69 | 216 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0213150 | Msa0292250 | 0.857810 | 1.266600e-62 | -8.615850e-47 |
| Msa0253450 | Msa0292250 | 0.833585 | 4.902245e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0292250 | MtrunA17_Chr2g0312791 | 96.226 | 106 | 4 | 0 | 1 | 106 | 1 | 106 | 4.86e-73 | 216 |
| Msa0292250 | MtrunA17_Chr2g0312771 | 74.528 | 106 | 27 | 0 | 1 | 106 | 1 | 106 | 4.17e-57 | 175 |
| Msa0292250 | MtrunA17_Chr2g0312751 | 74.528 | 106 | 27 | 0 | 1 | 106 | 1 | 106 | 1.02e-56 | 174 |
| Msa0292250 | MtrunA17_Chr2g0312781 | 71.698 | 106 | 30 | 0 | 1 | 106 | 18 | 123 | 5.84e-55 | 170 |
| Msa0292250 | MtrunA17_Chr2g0312731 | 70.755 | 106 | 31 | 0 | 1 | 106 | 1 | 106 | 9.16e-55 | 169 |
| Msa0292250 | MtrunA17_Chr2g0312691 | 68.868 | 106 | 33 | 0 | 1 | 106 | 1 | 106 | 3.01e-53 | 166 |
| Msa0292250 | MtrunA17_Chr2g0312811 | 69.444 | 108 | 31 | 1 | 1 | 106 | 1 | 108 | 1.49e-52 | 164 |
| Msa0292250 | MtrunA17_Chr2g0312721 | 70.755 | 106 | 31 | 0 | 1 | 106 | 1 | 106 | 2.39e-51 | 160 |
| Msa0292250 | MtrunA17_Chr2g0312681 | 67.925 | 106 | 34 | 0 | 1 | 106 | 1 | 106 | 1.62e-50 | 159 |
| Msa0292250 | MtrunA17_Chr8g0357241 | 67.290 | 107 | 35 | 0 | 1 | 107 | 1 | 107 | 1.62e-50 | 159 |
| Msa0292250 | MtrunA17_Chr4g0069471 | 72.115 | 104 | 28 | 1 | 1 | 103 | 22 | 125 | 2.59e-50 | 157 |
| Msa0292250 | MtrunA17_Chr8g0357211 | 66.355 | 107 | 36 | 0 | 1 | 107 | 1 | 107 | 5.27e-50 | 157 |
| Msa0292250 | MtrunA17_Chr2g0312711 | 66.038 | 106 | 36 | 0 | 1 | 106 | 1 | 106 | 6.63e-49 | 154 |
| Msa0292250 | MtrunA17_Chr3g0107731 | 65.000 | 100 | 35 | 0 | 5 | 104 | 10 | 109 | 2.31e-43 | 140 |
| Msa0292250 | MtrunA17_Chr3g0107741 | 63.462 | 104 | 38 | 0 | 3 | 106 | 8 | 111 | 8.89e-43 | 139 |
| Msa0292250 | MtrunA17_Chr4g0029341 | 57.547 | 106 | 44 | 1 | 1 | 106 | 1 | 105 | 4.85e-40 | 132 |
| Msa0292250 | MtrunA17_Chr1g0196661 | 59.615 | 104 | 41 | 1 | 4 | 107 | 3 | 105 | 6.93e-39 | 129 |
| Msa0292250 | MtrunA17_Chr3g0132581 | 55.882 | 102 | 44 | 1 | 3 | 104 | 4 | 104 | 6.27e-38 | 127 |
| Msa0292250 | MtrunA17_Chr5g0417011 | 52.381 | 105 | 50 | 0 | 2 | 106 | 5 | 109 | 1.34e-37 | 126 |
| Msa0292250 | MtrunA17_Chr8g0379581 | 55.238 | 105 | 46 | 1 | 2 | 106 | 3 | 106 | 2.42e-37 | 125 |
| Msa0292250 | MtrunA17_Chr1g0196691 | 55.769 | 104 | 45 | 1 | 4 | 107 | 28 | 130 | 5.02e-36 | 122 |
| Msa0292250 | MtrunA17_Chr1g0196721 | 58.252 | 103 | 42 | 1 | 5 | 107 | 3 | 104 | 1.05e-35 | 121 |
| Msa0292250 | MtrunA17_Chr7g0240641 | 56.436 | 101 | 43 | 1 | 3 | 103 | 6 | 105 | 1.25e-35 | 121 |
| Msa0292250 | MtrunA17_Chr7g0240631 | 55.446 | 101 | 44 | 1 | 3 | 103 | 6 | 105 | 2.84e-35 | 120 |
| Msa0292250 | MtrunA17_Chr7g0240691 | 57.426 | 101 | 42 | 1 | 3 | 103 | 36 | 135 | 2.96e-35 | 120 |
| Msa0292250 | MtrunA17_Chr7g0240681 | 55.446 | 101 | 44 | 1 | 3 | 103 | 6 | 105 | 5.04e-35 | 119 |
| Msa0292250 | MtrunA17_Chr5g0415411 | 53.271 | 107 | 48 | 1 | 2 | 106 | 3 | 109 | 5.56e-34 | 117 |
| Msa0292250 | MtrunA17_Chr1g0196711 | 55.769 | 104 | 45 | 1 | 4 | 107 | 3 | 105 | 5.21e-33 | 114 |
| Msa0292250 | MtrunA17_Chr8g0379561 | 54.808 | 104 | 46 | 1 | 4 | 107 | 6 | 108 | 5.50e-33 | 114 |
| Msa0292250 | MtrunA17_Chr4g0008791 | 51.000 | 100 | 48 | 1 | 4 | 103 | 7 | 105 | 1.78e-32 | 113 |
| Msa0292250 | MtrunA17_Chr7g0240561 | 52.475 | 101 | 47 | 1 | 3 | 103 | 6 | 105 | 6.64e-32 | 111 |
| Msa0292250 | MtrunA17_Chr4g0008781 | 52.475 | 101 | 47 | 1 | 3 | 103 | 7 | 106 | 1.37e-31 | 110 |
| Msa0292250 | MtrunA17_Chr8g0391631 | 52.427 | 103 | 47 | 1 | 4 | 104 | 21 | 123 | 2.76e-31 | 108 |
| Msa0292250 | MtrunA17_Chr7g0240511 | 53.465 | 101 | 46 | 1 | 3 | 103 | 6 | 105 | 4.34e-31 | 109 |
| Msa0292250 | MtrunA17_Chr7g0240611 | 51.485 | 101 | 48 | 1 | 3 | 103 | 6 | 105 | 4.55e-31 | 109 |
| Msa0292250 | MtrunA17_Chr1g0212301 | 53.271 | 107 | 48 | 2 | 1 | 107 | 1 | 105 | 6.43e-31 | 108 |
| Msa0292250 | MtrunA17_Chr7g0240541 | 52.475 | 101 | 47 | 1 | 3 | 103 | 6 | 105 | 1.90e-30 | 107 |
| Msa0292250 | MtrunA17_Chr7g0240661 | 50.485 | 103 | 50 | 1 | 1 | 103 | 4 | 105 | 1.97e-30 | 107 |
| Msa0292250 | MtrunA17_Chr1g0196771 | 49.020 | 102 | 51 | 1 | 3 | 104 | 2 | 102 | 2.15e-30 | 107 |
| Msa0292250 | MtrunA17_Chr7g0240521 | 52.475 | 101 | 47 | 1 | 3 | 103 | 13 | 112 | 2.39e-30 | 107 |
| Msa0292250 | MtrunA17_Chr7g0240651 | 47.619 | 105 | 54 | 1 | 3 | 107 | 6 | 109 | 3.89e-30 | 107 |
| Msa0292250 | MtrunA17_Chr7g0240671 | 50.000 | 104 | 51 | 1 | 1 | 104 | 1 | 103 | 4.12e-30 | 107 |
| Msa0292250 | MtrunA17_Chr6g0483141 | 59.770 | 87 | 34 | 1 | 18 | 104 | 17 | 102 | 5.82e-30 | 106 |
| Msa0292250 | MtrunA17_Chr7g0240581 | 50.943 | 106 | 50 | 2 | 3 | 107 | 6 | 110 | 6.49e-30 | 106 |
| Msa0292250 | MtrunA17_Chr7g0240531 | 50.476 | 105 | 51 | 1 | 3 | 107 | 6 | 109 | 1.09e-29 | 105 |
| Msa0292250 | MtrunA17_Chr5g0433801 | 50.000 | 106 | 51 | 2 | 2 | 106 | 4 | 108 | 1.34e-29 | 105 |
| Msa0292250 | MtrunA17_Chr8g0363751 | 52.885 | 104 | 47 | 1 | 3 | 104 | 4 | 107 | 1.55e-29 | 105 |
| Msa0292250 | MtrunA17_Chr7g0240551 | 52.830 | 106 | 48 | 2 | 3 | 107 | 6 | 110 | 4.71e-29 | 104 |
| Msa0292250 | MtrunA17_Chr2g0313561 | 66.667 | 60 | 20 | 0 | 47 | 106 | 1 | 60 | 9.84e-28 | 96.7 |
| Msa0292250 | MtrunA17_Chr4g0076691 | 34.409 | 93 | 57 | 2 | 4 | 93 | 15 | 106 | 1.26e-11 | 58.5 |
| Msa0292250 | MtrunA17_Chr4g0076681 | 35.106 | 94 | 57 | 2 | 3 | 93 | 14 | 106 | 1.66e-11 | 58.5 |
| Msa0292250 | MtrunA17_Chr5g0415421 | 42.466 | 73 | 40 | 1 | 28 | 98 | 11 | 83 | 8.55e-11 | 54.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0292250 | AT1G78340.1 | 70.755 | 106 | 31 | 0 | 1 | 106 | 1 | 106 | 2.39e-54 | 169 |
| Msa0292250 | AT1G78320.1 | 68.269 | 104 | 33 | 0 | 1 | 104 | 1 | 104 | 5.17e-50 | 158 |
| Msa0292250 | AT1G78380.1 | 66.981 | 106 | 35 | 0 | 1 | 106 | 1 | 106 | 1.28e-49 | 157 |
| Msa0292250 | AT1G17180.1 | 66.038 | 106 | 36 | 0 | 1 | 106 | 1 | 106 | 2.17e-49 | 156 |
| Msa0292250 | AT1G17170.1 | 66.355 | 107 | 36 | 0 | 1 | 107 | 1 | 107 | 3.55e-49 | 155 |
| Msa0292250 | AT1G17190.1 | 64.423 | 104 | 37 | 0 | 3 | 106 | 4 | 107 | 1.14e-47 | 152 |
| Msa0292250 | AT1G78360.1 | 65.421 | 107 | 36 | 1 | 1 | 106 | 1 | 107 | 2.92e-46 | 148 |
| Msa0292250 | AT1G78370.1 | 59.813 | 107 | 43 | 0 | 1 | 107 | 1 | 107 | 3.52e-46 | 148 |
| Msa0292250 | AT2G29420.1 | 59.048 | 105 | 42 | 1 | 2 | 106 | 7 | 110 | 1.12e-41 | 137 |
| Msa0292250 | AT1G53680.1 | 59.048 | 105 | 43 | 0 | 3 | 107 | 6 | 110 | 1.32e-40 | 134 |
| Msa0292250 | AT3G43800.1 | 59.813 | 107 | 40 | 2 | 3 | 106 | 4 | 110 | 3.87e-38 | 128 |
| Msa0292250 | AT1G74590.1 | 52.885 | 104 | 49 | 0 | 3 | 106 | 6 | 109 | 2.26e-37 | 126 |
| Msa0292250 | AT3G09270.1 | 55.238 | 105 | 46 | 1 | 3 | 106 | 5 | 109 | 1.47e-36 | 124 |
| Msa0292250 | AT2G29490.1 | 53.465 | 101 | 46 | 1 | 3 | 103 | 6 | 105 | 1.03e-35 | 121 |
| Msa0292250 | AT2G29480.1 | 51.923 | 104 | 49 | 1 | 3 | 106 | 6 | 108 | 9.95e-35 | 119 |
| Msa0292250 | AT5G62480.1 | 50.980 | 102 | 50 | 0 | 1 | 102 | 5 | 106 | 2.24e-34 | 118 |
| Msa0292250 | AT2G29450.1 | 51.923 | 104 | 49 | 1 | 3 | 106 | 5 | 107 | 2.31e-34 | 118 |
| Msa0292250 | AT2G29460.1 | 50.476 | 105 | 51 | 1 | 3 | 107 | 6 | 109 | 5.84e-34 | 117 |
| Msa0292250 | AT1G59700.1 | 56.311 | 103 | 43 | 2 | 3 | 103 | 5 | 107 | 6.42e-34 | 117 |
| Msa0292250 | AT2G29440.1 | 52.885 | 104 | 48 | 1 | 3 | 106 | 5 | 107 | 1.24e-33 | 116 |
| Msa0292250 | AT1G10370.1 | 54.808 | 104 | 46 | 1 | 2 | 104 | 3 | 106 | 1.70e-33 | 116 |
| Msa0292250 | AT1G10360.1 | 55.340 | 103 | 45 | 1 | 2 | 103 | 3 | 105 | 4.31e-33 | 115 |
| Msa0292250 | AT1G27130.1 | 52.427 | 103 | 47 | 1 | 3 | 103 | 5 | 107 | 3.81e-32 | 112 |
| Msa0292250 | AT1G69930.1 | 53.000 | 100 | 47 | 0 | 5 | 104 | 13 | 112 | 1.08e-30 | 108 |
| Msa0292250 | AT2G29470.1 | 50.000 | 104 | 50 | 2 | 5 | 107 | 8 | 110 | 1.42e-30 | 108 |
| Msa0292250 | AT1G59670.1 | 54.369 | 103 | 45 | 2 | 3 | 103 | 5 | 107 | 1.52e-30 | 108 |
| Msa0292250 | AT1G27140.1 | 50.000 | 104 | 49 | 1 | 3 | 103 | 5 | 108 | 3.11e-29 | 105 |
| Msa0292250 | AT1G78320.2 | 50.962 | 104 | 24 | 1 | 1 | 104 | 1 | 77 | 1.22e-28 | 102 |
| Msa0292250 | AT1G69920.1 | 46.154 | 104 | 54 | 1 | 5 | 106 | 35 | 138 | 1.45e-27 | 101 |
| Msa0292250 | AT5G62480.2 | 35.294 | 102 | 40 | 1 | 1 | 102 | 5 | 80 | 1.57e-16 | 72.0 |
| Msa0292250 | AT5G62480.3 | 35.294 | 102 | 39 | 1 | 1 | 102 | 5 | 79 | 2.11e-16 | 71.6 |
Find 28 sgRNAs with CRISPR-Local
Find 37 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGAGCACAAGCTAGATTT+TGG | 0.186476 | 2_3:-41187313 | Msa0292250:CDS |
| ATTACAAGTGACTCACAAAT+AGG | 0.297067 | 2_3:+41187398 | None:intergenic |
| GATATTTAATCAGTTGAGTT+AGG | 0.322462 | 2_3:-41187127 | None:intergenic |
| GGTTTCTGGATAAGTCCTTA+TGG | 0.328976 | 2_3:-41187560 | Msa0292250:CDS |
| AAGAATAGCCCTTGCTGAAA+AGG | 0.396907 | 2_3:-41187528 | Msa0292250:CDS |
| TTGCCATTGTGGATTAGAAC+CGG | 0.405758 | 2_3:+41187422 | None:intergenic |
| CACAAATAGGTTTGCCATTG+TGG | 0.406278 | 2_3:+41187411 | None:intergenic |
| ATAGAGATGCAAGGGAGAAT+TGG | 0.406692 | 2_3:-41187484 | Msa0292250:CDS |
| AAAATCTAGCTTGTGCTCTC+TGG | 0.411980 | 2_3:+41187315 | None:intergenic |
| TTGAGTATATTGATGAGGTT+TGG | 0.428745 | 2_3:-41187373 | Msa0292250:CDS |
| ATTCTTGCTCTCATTCCATA+AGG | 0.463260 | 2_3:+41187545 | None:intergenic |
| GGCTGACTATGTTGATAAAA+CGG | 0.464640 | 2_3:-41187291 | Msa0292250:intron |
| AGAATAGCCCTTGCTGAAAA+GGG | 0.508196 | 2_3:-41187527 | Msa0292250:CDS |
| GGGTTCATTTGTAGAAGATA+AGG | 0.510488 | 2_3:+41187461 | None:intergenic |
| CTAGCTTGTGCTCTCTGGTA+GGG | 0.530129 | 2_3:+41187320 | None:intergenic |
| GTATATTGATGAGGTTTGGA+AGG | 0.548215 | 2_3:-41187369 | Msa0292250:CDS |
| GTTCATAGATAGAGATGCAA+GGG | 0.548817 | 2_3:-41187492 | Msa0292250:CDS |
| TGCCATTGTGGATTAGAACC+GGG | 0.551246 | 2_3:+41187423 | None:intergenic |
| TCTAGCTTGTGCTCTCTGGT+AGG | 0.552026 | 2_3:+41187319 | None:intergenic |
| CTACCAAGTCATGGCTGATG+AGG | 0.563594 | 2_3:-41187594 | None:intergenic |
| CCAAGTCATGGCTGATGAGG+TGG | 0.571685 | 2_3:-41187591 | None:intergenic |
| CCCGGTTCACAAGAAAATCC+CGG | 0.589293 | 2_3:-41187441 | Msa0292250:CDS |
| GCTCTCTGGTAGGGATCAGA+AGG | 0.603013 | 2_3:+41187329 | None:intergenic |
| AGTTCATAGATAGAGATGCA+AGG | 0.614971 | 2_3:-41187493 | Msa0292250:CDS |
| TTATCTTCTACAAATGAACC+CGG | 0.663975 | 2_3:-41187459 | Msa0292250:CDS |
| AATTGTTGAGTATATTGATG+AGG | 0.670411 | 2_3:-41187378 | Msa0292250:CDS |
| TAGGGATCAGAAGGCAACAA+CGG | 0.683708 | 2_3:+41187338 | None:intergenic |
| ATCCCGGTTCTAATCCACAA+TGG | 0.688019 | 2_3:-41187425 | Msa0292250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATTGTTGAGTATATTGATG+AGG | - | chr2_3:41187334-41187353 | Msa0292250:CDS | 25.0% |
| TTATCTTCTACAAATGAACC+CGG | - | chr2_3:41187253-41187272 | Msa0292250:intron | 30.0% | |
| ATTACAAGTGACTCACAAAT+AGG | + | chr2_3:41187317-41187336 | None:intergenic | 30.0% | |
| TTGAGTATATTGATGAGGTT+TGG | - | chr2_3:41187339-41187358 | Msa0292250:CDS | 30.0% | |
| ATTCTTGCTCTCATTCCATA+AGG | + | chr2_3:41187170-41187189 | None:intergenic | 35.0% | |
| AGTTCATAGATAGAGATGCA+AGG | - | chr2_3:41187219-41187238 | Msa0292250:intron | 35.0% | |
| GTTCATAGATAGAGATGCAA+GGG | - | chr2_3:41187220-41187239 | Msa0292250:intron | 35.0% | |
| GGGTTCATTTGTAGAAGATA+AGG | + | chr2_3:41187254-41187273 | None:intergenic | 35.0% | |
| GTATATTGATGAGGTTTGGA+AGG | - | chr2_3:41187343-41187362 | Msa0292250:CDS | 35.0% | |
| ! | GGCTGACTATGTTGATAAAA+CGG | - | chr2_3:41187421-41187440 | Msa0292250:CDS | 35.0% |
| TTGAAACTCACATACACAAG+TGG | - | chr2_3:41187525-41187544 | Msa0292250:CDS | 35.0% | |
| !!! | AGGTGGTTTTGTTAGGTTTC+TGG | - | chr2_3:41187138-41187157 | Msa0292250:intron | 40.0% |
| ! | GGTTTCTGGATAAGTCCTTA+TGG | - | chr2_3:41187152-41187171 | Msa0292250:intron | 40.0% |
| AAGAATAGCCCTTGCTGAAA+AGG | - | chr2_3:41187184-41187203 | Msa0292250:intron | 40.0% | |
| AGAATAGCCCTTGCTGAAAA+GGG | - | chr2_3:41187185-41187204 | Msa0292250:intron | 40.0% | |
| ATAGAGATGCAAGGGAGAAT+TGG | - | chr2_3:41187228-41187247 | Msa0292250:intron | 40.0% | |
| !! | TTGCCATTGTGGATTAGAAC+CGG | + | chr2_3:41187293-41187312 | None:intergenic | 40.0% |
| CACAAATAGGTTTGCCATTG+TGG | + | chr2_3:41187304-41187323 | None:intergenic | 40.0% | |
| ! | AAAATCTAGCTTGTGCTCTC+TGG | + | chr2_3:41187400-41187419 | None:intergenic | 40.0% |
| !! | AGAGAGCACAAGCTAGATTT+TGG | - | chr2_3:41187399-41187418 | Msa0292250:CDS | 40.0% |
| !! | GAGAGCACAAGCTAGATTTT+GGG | - | chr2_3:41187400-41187419 | Msa0292250:CDS | 40.0% |
| AACTCACATACACAAGTGGA+AGG | - | chr2_3:41187529-41187548 | Msa0292250:CDS | 40.0% | |
| !!! | GCTGATGAGGTGGTTTTGTT+AGG | - | chr2_3:41187131-41187150 | Msa0292250:intron | 45.0% |
| ! | CTTGACACCCTTTTCAGCAA+GGG | + | chr2_3:41187195-41187214 | None:intergenic | 45.0% |
| ! | ACTTGACACCCTTTTCAGCA+AGG | + | chr2_3:41187196-41187215 | None:intergenic | 45.0% |
| ! | ACCGGGATTTTCTTGTGAAC+CGG | + | chr2_3:41187275-41187294 | None:intergenic | 45.0% |
| ! | ATCCCGGTTCTAATCCACAA+TGG | - | chr2_3:41187287-41187306 | Msa0292250:intron | 45.0% |
| !! | TGCCATTGTGGATTAGAACC+GGG | + | chr2_3:41187292-41187311 | None:intergenic | 45.0% |
| TAGGGATCAGAAGGCAACAA+CGG | + | chr2_3:41187377-41187396 | None:intergenic | 45.0% | |
| CACATACACAAGTGGAAGGA+CGG | - | chr2_3:41187533-41187552 | Msa0292250:CDS | 45.0% | |
| ACATACACAAGTGGAAGGAC+GGG | - | chr2_3:41187534-41187553 | Msa0292250:CDS | 45.0% | |
| ! | CCGGGATTTTCTTGTGAACC+GGG | + | chr2_3:41187274-41187293 | None:intergenic | 50.0% |
| CCCGGTTCACAAGAAAATCC+CGG | - | chr2_3:41187271-41187290 | Msa0292250:intron | 50.0% | |
| ! | CTAGCTTGTGCTCTCTGGTA+GGG | + | chr2_3:41187395-41187414 | None:intergenic | 50.0% |
| ! | TCTAGCTTGTGCTCTCTGGT+AGG | + | chr2_3:41187396-41187415 | None:intergenic | 50.0% |
| GCTCTCTGGTAGGGATCAGA+AGG | + | chr2_3:41187386-41187405 | None:intergenic | 55.0% | |
| TACACAAGTGGAAGGACGGG+TGG | - | chr2_3:41187537-41187556 | Msa0292250:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 41187128 | 41187606 | 41187128 | ID=Msa0292250;Name=Msa0292250 |
| chr2_3 | mRNA | 41187128 | 41187606 | 41187128 | ID=Msa0292250-mRNA-1;Parent=Msa0292250;Name=Msa0292250-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0|0.5|1|1|2|0|107 |
| chr2_3 | exon | 41187292 | 41187606 | 41187292 | ID=Msa0292250-mRNA-1:exon:13314;Parent=Msa0292250-mRNA-1 |
| chr2_3 | exon | 41187128 | 41187136 | 41187128 | ID=Msa0292250-mRNA-1:exon:13313;Parent=Msa0292250-mRNA-1 |
| chr2_3 | CDS | 41187292 | 41187606 | 41187292 | ID=Msa0292250-mRNA-1:cds;Parent=Msa0292250-mRNA-1 |
| chr2_3 | CDS | 41187128 | 41187136 | 41187128 | ID=Msa0292250-mRNA-1:cds;Parent=Msa0292250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
