AlfalfaGEDB | Msa0293370

M. sativa cultivar zhongmu-4 / Msa0293370

KEGG: -
GO: GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046148 GO:0071704 GO:1901576
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0293370	XP_039686610.1	81.126	302	23	1	1	268	1	302	3.11e-175	495

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0293370	sp\|Q8GWB2\|NDX1_ARATH	47.569	288	107	5	1	253	1	279	9.97e-84	255

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0293370	A0A072VAS1	81.126	302	23	1	1	268	1	302	1.49e-175	495

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0213750	Msa0293370	0.846963	1.561014e-59	-8.615850e-47
Msa0254150	Msa0293370	0.851523	8.397458e-61	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0293370	MtrunA17_Chr2g0314411	79.545	308	23	2	1	268	1	308	1.65e-176	488

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0293370	AT1G28100.1	47.569	288	107	5	1	253	1	279	1.01e-84	255
Msa0293370	AT1G28100.2	47.569	288	107	5	1	253	1	279	1.01e-84	255
Msa0293370	AT1G28100.6	47.569	288	107	5	1	253	1	279	1.01e-84	255
Msa0293370	AT1G28100.3	47.569	288	107	5	1	253	1	279	1.01e-84	255
Msa0293370	AT1G28100.4	46.284	296	107	6	1	253	1	287	8.14e-82	248
Msa0293370	AT1G28100.5	50.235	213	69	3	1	178	1	211	1.93e-66	206

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Find 68 sgRNAs with CRISPR-Local

Find 646 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTCCATGGATATTTAG+AGG	0.467483	2_3:-43775246	Msa0293370:CDS
AAGTAAAGTAGTGGAATATG+TGG	0.521558	2_3:+43775667	None:intergenic
AATATAAGTCTCACAAGTGC+TGG	0.527940	2_3:-43767691	Msa0293370:intron
AATGATCTTGAAACATTCAA+AGG	0.526748	2_3:+43766562	None:intergenic
AATTACATTCATAAGCAAGA+AGG	0.538902	2_3:+43766252	None:intergenic
ACATAATCTATATGAATTTA+AGG	0.109240	2_3:+43766169	None:intergenic
ACCTCATCAAAGGCACCGAC+TGG	0.476368	2_3:+43774886	None:intergenic
ACTCTTGCCAGATTGAATGC+AGG	0.543041	2_3:-43767142	Msa0293370:intron
AGACAATCACAAGGCAGGAG+TGG	0.566940	2_3:-43767817	Msa0293370:CDS
AGTTATGAGGACAGTCCAGT+CGG	0.672342	2_3:-43774901	Msa0293370:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAACCATATATAACGACGTT+TGG	+	chr2_3:43766092-43766111	None:intergenic	30.0%
TAGCATAAGAAGTAAAGTAG+TGG	+	chr2_3:43766185-43766204	None:intergenic	30.0%
TCTTCTCATTCTTTCAACAA+AGG	-	chr2_3:43766216-43766235	Msa0293370:three_prime_UTR	30.0%
TATGAAATAAGCAAAATGGG+AGG	+	chr2_3:43766351-43766370	None:intergenic	30.0%
TGTTACTAACTTACTGTTAC+TGG	+	chr2_3:43766481-43766500	None:intergenic	30.0%
TAGAACCAAAATCTTCATCT+GGG	-	chr2_3:43766565-43766584	Msa0293370:CDS	30.0%
TTAGTGCATTCATCATTTCA+AGG	+	chr2_3:43766881-43766900	None:intergenic	30.0%
TAAAAACAGAACCTCATCAA+AGG	+	chr2_3:43766967-43766986	None:intergenic	30.0%
AAAGGAGCAACCAAATTATT+CGG	-	chr2_3:43767620-43767639	Msa0293370:intron	30.0%
CATTTCCTTACCGAATAATT+TGG	+	chr2_3:43767633-43767652	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	43766082	43775780	43766082	ID=Msa0293370;Name=Msa0293370
chr2_3	mRNA	43766082	43775780	43766082	ID=Msa0293370-mRNA-1;Parent=Msa0293370;Name=Msa0293370-mRNA-1;_AED=0.40;_eAED=0.40;_QI=244\|0.87\|1\|1\|0.87\|0.88\|9\|251\|268
chr2_3	exon	43766082	43766600	43766082	ID=Msa0293370-mRNA-1:exon:13868;Parent=Msa0293370-mRNA-1
chr2_3	exon	43767143	43767199	43767143	ID=Msa0293370-mRNA-1:exon:13867;Parent=Msa0293370-mRNA-1
chr2_3	exon	43767292	43767355	43767292	ID=Msa0293370-mRNA-1:exon:13866;Parent=Msa0293370-mRNA-1
chr2_3	exon	43767692	43767857	43767692	ID=Msa0293370-mRNA-1:exon:13865;Parent=Msa0293370-mRNA-1
chr2_3	exon	43772249	43772287	43772249	ID=Msa0293370-mRNA-1:exon:13864;Parent=Msa0293370-mRNA-1
chr2_3	exon	43774888	43774951	43774888	ID=Msa0293370-mRNA-1:exon:13863;Parent=Msa0293370-mRNA-1
chr2_3	exon	43775072	43775155	43775072	ID=Msa0293370-mRNA-1:exon:13862;Parent=Msa0293370-mRNA-1
chr2_3	exon	43775243	43775310	43775243	ID=Msa0293370-mRNA-1:exon:13861;Parent=Msa0293370-mRNA-1
chr2_3	exon	43775540	43775780	43775540	ID=Msa0293370-mRNA-1:exon:13860;Parent=Msa0293370-mRNA-1
chr2_3	five_prime_UTR	43775540	43775780	43775540	ID=Msa0293370-mRNA-1:five_prime_utr;Parent=Msa0293370-mRNA-1
chr2_3	five_prime_UTR	43775308	43775310	43775308	ID=Msa0293370-mRNA-1:five_prime_utr;Parent=Msa0293370-mRNA-1
chr2_3	CDS	43775243	43775307	43775243	ID=Msa0293370-mRNA-1:cds;Parent=Msa0293370-mRNA-1
chr2_3	CDS	43775072	43775155	43775072	ID=Msa0293370-mRNA-1:cds;Parent=Msa0293370-mRNA-1
chr2_3	CDS	43774888	43774951	43774888	ID=Msa0293370-mRNA-1:cds;Parent=Msa0293370-mRNA-1
chr2_3	CDS	43772249	43772287	43772249	ID=Msa0293370-mRNA-1:cds;Parent=Msa0293370-mRNA-1
chr2_3	CDS	43767692	43767857	43767692	ID=Msa0293370-mRNA-1:cds;Parent=Msa0293370-mRNA-1
chr2_3	CDS	43767292	43767355	43767292	ID=Msa0293370-mRNA-1:cds;Parent=Msa0293370-mRNA-1
chr2_3	CDS	43767143	43767199	43767143	ID=Msa0293370-mRNA-1:cds;Parent=Msa0293370-mRNA-1
chr2_3	CDS	43766333	43766600	43766333	ID=Msa0293370-mRNA-1:cds;Parent=Msa0293370-mRNA-1
chr2_3	three_prime_UTR	43766082	43766332	43766082	ID=Msa0293370-mRNA-1:three_prime_utr;Parent=Msa0293370-mRNA-1

Gene Sequence

>Msa0293370

ATGGAAAGTGTAGAACCAAAATCTTCATCTGGGTATGGTAAACCTCCATGGATATTTAGAGGAAGTGCCTTGTATCAACTCCATCTTGTGAAAGCAGAGAAAGCAAGAGCATGTATTCCAAAAGAATTGAAATTGGTTGAAGCTTTTGGATACACTCTTGGTGGATTCTTTCTAGCTAGTTATGAGGACAGTCCAGTCGGTGCCTTTGATGAGGATGTGGGGCTTCCCAGTCAAGTAGCTAGATTTTCCAAGACTATTTCAGCAGTCTCAAGACAATCACAAGGCAGGAGTGGATTTTTAAATATGATTCAAATTGGTTCCGAGTTCCGCAATCCCAATGATCATCTAAATGTTCAAGTAACCGAAATCAAATCTCTCGATGCAGCAGATCCTTGTAATATAAGTCTCACAAGTGCTGTGCCTGCTTTGAGGTTTGACCGTTGGATGGGGCCAACGATTAAAATGTCGCTTCCAAGTTTTAGTGGTGGTACAGAGTTTAATCCTAACCTCCTTAAGTACTCTTGCCAGATTGAATGCAGGGTGCAAGCAGTGAAGCCTTTGAATGTTTCAAGATCATTCCCTTTAACAAATGTTGATGAAAAAGATCAACAAACTTTACAAGACTATGAAGGAAGTATCCATATGACTAAAGATCATGGAAAACAAAACTTAAGCACCTATGTGATGTTATCGAAACCGATATTAACACTCAAGTTTAATCAAATGAAGATGCAAGTCGAAGCTCCTATTGTTCTTTATCAGTGCTCAAATTCTTTAGAACCTACTACTGTAAGCCCTGTTCCATAA

Protein sequence

>Msa0293370

MESVEPKSSSGYGKPPWIFRGSALYQLHLVKAEKARACIPKELKLVEAFGYTLGGFFLASYEDSPVGAFDEDVGLPSQVARFSKTISAVSRQSQGRSGFLNMIQIGSEFRNPNDHLNVQVTEIKSLDAADPCNISLTSAVPALRFDRWMGPTIKMSLPSFSGGTEFNPNLLKYSCQIECRVQAVKPLNVSRSFPLTNVDEKDQQTLQDYEGSIHMTKDHGKQNLSTYVMLSKPILTLKFNQMKMQVEAPIVLYQCSNSLEPTTVSPVP*