Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0293540 | XP_013464521.1 | 97.959 | 294 | 6 | 0 | 1 | 294 | 1 | 294 | 0.0 | 607 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0293540 | sp|Q9SYM2|BBX22_ARATH | 53.147 | 286 | 112 | 4 | 1 | 273 | 1 | 277 | 4.56e-93 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0293540 | A0A072VAB5 | 97.959 | 294 | 6 | 0 | 1 | 294 | 1 | 294 | 0.0 | 607 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0293540 | TF | DBB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0213980 | Msa0293540 | 0.805998 | 1.018465e-49 | -8.615850e-47 |
| Msa0293540 | Msa0332410 | 0.842638 | 2.288142e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0293540 | MtrunA17_Chr2g0314671 | 97.959 | 294 | 6 | 0 | 1 | 294 | 1 | 294 | 0.0 | 607 |
| Msa0293540 | MtrunA17_Chr4g0033641 | 60.550 | 109 | 43 | 0 | 1 | 109 | 1 | 109 | 4.86e-43 | 147 |
| Msa0293540 | MtrunA17_Chr2g0329511 | 33.835 | 266 | 127 | 6 | 1 | 266 | 1 | 217 | 1.20e-42 | 146 |
| Msa0293540 | MtrunA17_Chr3g0145061 | 50.685 | 146 | 71 | 1 | 1 | 145 | 1 | 146 | 5.41e-41 | 142 |
| Msa0293540 | MtrunA17_Chr4g0035651 | 54.717 | 106 | 47 | 1 | 1 | 105 | 1 | 106 | 7.86e-36 | 128 |
| Msa0293540 | MtrunA17_Chr3g0142221 | 54.717 | 106 | 46 | 1 | 1 | 104 | 1 | 106 | 8.20e-36 | 128 |
| Msa0293540 | MtrunA17_Chr1g0155811 | 54.286 | 105 | 47 | 1 | 1 | 104 | 1 | 105 | 1.38e-35 | 129 |
| Msa0293540 | MtrunA17_Chr5g0405151 | 50.000 | 104 | 49 | 2 | 1 | 104 | 1 | 101 | 1.09e-26 | 103 |
| Msa0293540 | MtrunA17_Chr1g0150471 | 41.667 | 96 | 47 | 1 | 5 | 100 | 6 | 92 | 1.11e-18 | 84.3 |
| Msa0293540 | MtrunA17_Chr3g0136701 | 44.792 | 96 | 44 | 1 | 5 | 100 | 6 | 92 | 1.58e-18 | 83.6 |
| Msa0293540 | MtrunA17_Chr7g0220721 | 43.478 | 92 | 43 | 1 | 5 | 96 | 26 | 108 | 1.74e-17 | 82.0 |
| Msa0293540 | MtrunA17_Chr4g0072871 | 38.043 | 92 | 48 | 1 | 5 | 96 | 22 | 104 | 1.91e-14 | 72.8 |
| Msa0293540 | MtrunA17_Chr5g0429341 | 33.333 | 96 | 55 | 1 | 1 | 96 | 1 | 87 | 2.51e-11 | 63.9 |
| Msa0293540 | MtrunA17_Chr2g0322941 | 29.747 | 158 | 89 | 4 | 1 | 147 | 40 | 186 | 7.50e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0293540 | AT1G78600.1 | 53.147 | 286 | 112 | 4 | 1 | 273 | 1 | 277 | 4.64e-94 | 280 |
| Msa0293540 | AT1G78600.2 | 48.693 | 306 | 115 | 5 | 1 | 273 | 1 | 297 | 1.02e-91 | 275 |
| Msa0293540 | AT1G06040.2 | 64.220 | 109 | 39 | 0 | 1 | 109 | 1 | 109 | 2.18e-46 | 154 |
| Msa0293540 | AT1G06040.1 | 64.220 | 109 | 39 | 0 | 1 | 109 | 1 | 109 | 8.38e-46 | 155 |
| Msa0293540 | AT2G31380.1 | 61.468 | 109 | 42 | 0 | 1 | 109 | 1 | 109 | 2.81e-42 | 145 |
| Msa0293540 | AT4G10240.1 | 49.701 | 167 | 62 | 5 | 1 | 161 | 1 | 151 | 8.83e-41 | 139 |
| Msa0293540 | AT4G39070.1 | 49.640 | 139 | 68 | 2 | 1 | 138 | 1 | 138 | 2.09e-35 | 128 |
| Msa0293540 | AT1G75540.1 | 40.594 | 202 | 101 | 6 | 1 | 191 | 1 | 194 | 5.25e-35 | 129 |
| Msa0293540 | AT2G21320.1 | 50.000 | 104 | 49 | 2 | 1 | 104 | 1 | 101 | 1.82e-26 | 102 |
| Msa0293540 | AT4G38960.1 | 40.580 | 138 | 78 | 3 | 1 | 138 | 1 | 134 | 2.69e-26 | 102 |
| Msa0293540 | AT4G38960.6 | 40.580 | 138 | 78 | 3 | 1 | 138 | 1 | 134 | 2.69e-26 | 102 |
| Msa0293540 | AT5G15850.1 | 42.857 | 98 | 47 | 1 | 5 | 102 | 12 | 100 | 3.84e-18 | 84.0 |
| Msa0293540 | AT4G38960.3 | 30.939 | 181 | 78 | 4 | 1 | 138 | 1 | 177 | 1.20e-17 | 80.5 |
| Msa0293540 | AT2G24790.1 | 41.667 | 96 | 47 | 1 | 5 | 100 | 8 | 94 | 1.30e-17 | 81.6 |
| Msa0293540 | AT5G24930.1 | 42.708 | 96 | 46 | 1 | 5 | 100 | 6 | 92 | 1.39e-17 | 82.4 |
| Msa0293540 | AT3G02380.1 | 43.011 | 93 | 44 | 1 | 5 | 97 | 16 | 99 | 2.17e-17 | 81.6 |
| Msa0293540 | AT2G24790.2 | 41.667 | 96 | 47 | 1 | 5 | 100 | 8 | 94 | 3.80e-17 | 79.0 |
| Msa0293540 | AT5G15840.1 | 39.785 | 93 | 47 | 1 | 5 | 97 | 20 | 103 | 6.95e-16 | 77.4 |
| Msa0293540 | AT5G15840.2 | 39.785 | 93 | 47 | 1 | 5 | 97 | 20 | 103 | 1.42e-15 | 75.5 |
| Msa0293540 | AT2G47890.3 | 38.710 | 93 | 48 | 1 | 5 | 97 | 13 | 96 | 1.28e-12 | 67.4 |
| Msa0293540 | AT2G47890.1 | 38.710 | 93 | 48 | 1 | 5 | 97 | 13 | 96 | 1.35e-12 | 67.8 |
| Msa0293540 | AT2G47890.2 | 38.710 | 93 | 48 | 1 | 5 | 97 | 13 | 96 | 3.60e-12 | 65.5 |
| Msa0293540 | AT5G57660.1 | 34.783 | 92 | 47 | 2 | 5 | 96 | 22 | 100 | 3.65e-11 | 63.5 |
| Msa0293540 | AT4G38960.5 | 33.981 | 103 | 64 | 3 | 36 | 138 | 3 | 101 | 5.56e-11 | 60.1 |
| Msa0293540 | AT4G38960.2 | 33.981 | 103 | 64 | 3 | 36 | 138 | 3 | 101 | 5.56e-11 | 60.1 |
Find 62 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTTGAAAATTTGAAATT+TGG | 0.187546 | 2_3:+44461988 | Msa0293540:five_prime_UTR |
| AATTCTTTGAAGACGGATTC+TGG | 0.244246 | 2_3:+44463405 | Msa0293540:CDS |
| TCTTCATTGGATCTTAAAAT+AGG | 0.258790 | 2_3:-44464429 | None:intergenic |
| CCACCAGCCAAGGTGTCTTA+TGG | 0.275750 | 2_3:+44463543 | Msa0293540:CDS |
| CCTACGGAAGCCGGTGGATT+TGG | 0.277191 | 2_3:+44463513 | Msa0293540:CDS |
| GTATTCCATTTCCTCTTCAT+TGG | 0.304492 | 2_3:-44464442 | None:intergenic |
| GGATAATGCTCTATTTGTTC+CGG | 0.342587 | 2_3:+44464572 | Msa0293540:CDS |
| TGCCGTGATCAGTAGCTTCT+AGG | 0.350032 | 2_3:-44463374 | None:intergenic |
| ACTCTGTCGAAAATGTGATT+TGG | 0.369682 | 2_3:+44463284 | Msa0293540:CDS |
| CCCTTCACCACCTACAGCTT+CGG | 0.385052 | 2_3:+44464515 | Msa0293540:CDS |
| AAGATCCAATGAAGAGGAAA+TGG | 0.393956 | 2_3:+44464437 | Msa0293540:CDS |
| CTACAGCTTCGGGACTAAAC+TGG | 0.402412 | 2_3:+44464526 | Msa0293540:CDS |
| TGATGAAGCTGCTTTGTGTT+GGG | 0.412693 | 2_3:+44462087 | Msa0293540:CDS |
| ACCTGACAAATATCACATTT+AGG | 0.415653 | 2_3:-44462193 | None:intergenic |
| GGAACTGTCCAAGATGAATC+TGG | 0.420434 | 2_3:-44464486 | None:intergenic |
| ATCCGTCTTCAAAGAATTTG+AGG | 0.421525 | 2_3:-44463400 | None:intergenic |
| CCTTCACCACCTACAGCTTC+GGG | 0.422261 | 2_3:+44464516 | Msa0293540:CDS |
| ATCTTCTTCTGTGTCGAGAA+AGG | 0.428233 | 2_3:+44463449 | Msa0293540:CDS |
| GCTCTATTTGTTCCGGACAT+AGG | 0.432303 | 2_3:+44464579 | Msa0293540:CDS |
| TAAATCTTTCAGGAAGCATT+CGG | 0.445968 | 2_3:+44463231 | Msa0293540:intron |
| CTTCTCACTGGAGTAAAAGT+TGG | 0.449371 | 2_3:+44463351 | Msa0293540:CDS |
| ACCGTGTTCCAGATTCATCT+TGG | 0.454380 | 2_3:+44464478 | Msa0293540:CDS |
| GCCTAAATGTGATATTTGTC+AGG | 0.459129 | 2_3:+44462192 | Msa0293540:CDS |
| CTGATGAAGCTGCTTTGTGT+TGG | 0.463397 | 2_3:+44462086 | Msa0293540:CDS |
| CATCAGAGGTTTCTTCTCAC+TGG | 0.476131 | 2_3:+44463339 | Msa0293540:CDS |
| TATGGTGGTGGTTCTAACTC+TGG | 0.487845 | 2_3:+44463561 | Msa0293540:CDS |
| TTCCTCAAATTCTTTGAAGA+CGG | 0.489384 | 2_3:+44463398 | Msa0293540:CDS |
| TGGATGGATCATCAAATTCA+AGG | 0.498918 | 2_3:+44463652 | Msa0293540:CDS |
| GAAATGTTGCCTACGGAAGC+CGG | 0.500042 | 2_3:+44463504 | Msa0293540:CDS |
| CAGTCAGAATTATAACTACA+TGG | 0.503150 | 2_3:+44463632 | Msa0293540:CDS |
| CCCGAAGCTGTAGGTGGTGA+AGG | 0.505838 | 2_3:-44464516 | None:intergenic |
| GCCAAGGTGTCTTATGGTGG+TGG | 0.508324 | 2_3:+44463549 | Msa0293540:CDS |
| CCACCATAAGACACCTTGGC+TGG | 0.515474 | 2_3:-44463546 | None:intergenic |
| ACTGCAAATGCATTTGTCTC+AGG | 0.516070 | 2_3:+44463315 | Msa0293540:CDS |
| CAGAATTATAACTACATGGA+TGG | 0.518101 | 2_3:+44463636 | Msa0293540:CDS |
| GGGAAAATTGAAACTTGAAG+TGG | 0.523387 | 2_3:+44461962 | None:intergenic |
| GGAAAATTGAAACTTGAAGT+GGG | 0.530897 | 2_3:+44461963 | Msa0293540:five_prime_UTR |
| TCATTGTACTCAGATGATTG+AGG | 0.549321 | 2_3:-44463483 | None:intergenic |
| TGAGAAGAAGAAGCAGAAAG+AGG | 0.549965 | 2_3:-44462166 | None:intergenic |
| AATGGAATACGACGACTACA+TGG | 0.559471 | 2_3:+44464455 | Msa0293540:CDS |
| TGGAAAATCTCCAAATCCAC+CGG | 0.564110 | 2_3:-44463523 | None:intergenic |
| ATGCTAGTAAAGCCTATGTC+CGG | 0.569585 | 2_3:-44464591 | None:intergenic |
| CCAGCCAAGGTGTCTTATGG+TGG | 0.576805 | 2_3:+44463546 | Msa0293540:CDS |
| CAGTTTAGTCCCGAAGCTGT+AGG | 0.586584 | 2_3:-44464525 | None:intergenic |
| CCGAAGCTGTAGGTGGTGAA+GGG | 0.591243 | 2_3:-44464515 | None:intergenic |
| CCAAATCCACCGGCTTCCGT+AGG | 0.592074 | 2_3:-44463513 | None:intergenic |
| ACCACCACCATAAGACACCT+TGG | 0.592536 | 2_3:-44463550 | None:intergenic |
| TTGTGAAGGTGCTGAAGCTA+AGG | 0.593143 | 2_3:+44462051 | Msa0293540:CDS |
| CCATAAGACACCTTGGCTGG+TGG | 0.594137 | 2_3:-44463543 | None:intergenic |
| CATTTGTCTCAGGACATCAG+AGG | 0.597415 | 2_3:+44463325 | Msa0293540:CDS |
| GGATGGATCATCAAATTCAA+GGG | 0.601507 | 2_3:+44463653 | Msa0293540:CDS |
| GTACAATGAAATGTTGCCTA+CGG | 0.602602 | 2_3:+44463497 | Msa0293540:CDS |
| CATTATCCAATGAATACCGA+GGG | 0.607602 | 2_3:-44464557 | None:intergenic |
| GGCCTAGAAGCTACTGATCA+CGG | 0.607655 | 2_3:+44463372 | Msa0293540:CDS |
| ATTCAGTGTAATGTTTGTGA+AGG | 0.627076 | 2_3:+44462037 | Msa0293540:CDS |
| GTAGGTGGTGAAGGGATCTG+AGG | 0.637306 | 2_3:-44464507 | None:intergenic |
| GCATTATCCAATGAATACCG+AGG | 0.658633 | 2_3:-44464558 | None:intergenic |
| TTTAGTCCCGAAGCTGTAGG+TGG | 0.663191 | 2_3:-44464522 | None:intergenic |
| TCCAAGATGAATCTGGAACA+CGG | 0.669135 | 2_3:-44464479 | None:intergenic |
| ATGTTGCCTACGGAAGCCGG+TGG | 0.695958 | 2_3:+44463507 | Msa0293540:CDS |
| CCAAATTAATGATGACTCCG+CGG | 0.721909 | 2_3:-44464648 | None:intergenic |
| ACTCTGGAAACATGTCACAG+TGG | 0.763112 | 2_3:+44463577 | Msa0293540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTGATTTATTTGAA+TGG | + | chr2_3:44462268-44462287 | Msa0293540:intron | 10.0% |
| !!! | GTATTTTTTTGAAATTAATT+TGG | + | chr2_3:44462290-44462309 | Msa0293540:intron | 10.0% |
| !! | AGTTCAAAAATATAAATAAA+AGG | - | chr2_3:44462472-44462491 | None:intergenic | 10.0% |
| !!! | TTTAATTGTAATATTTTGAT+GGG | + | chr2_3:44462491-44462510 | Msa0293540:intron | 10.0% |
| !!! | TTTAATTTTGTATAAGGTTT+TGG | + | chr2_3:44462234-44462253 | Msa0293540:intron | 15.0% |
| !! | CATGAAAAAGTAAAAAAAAT+TGG | + | chr2_3:44462325-44462344 | Msa0293540:intron | 15.0% |
| !!! | CTTTAATTGTAATATTTTGA+TGG | + | chr2_3:44462490-44462509 | Msa0293540:intron | 15.0% |
| !!! | TGAAATCTATAATTTTGTAT+AGG | + | chr2_3:44462609-44462628 | Msa0293540:intron | 15.0% |
| !!! | GAAATCTATAATTTTGTATA+GGG | + | chr2_3:44462610-44462629 | Msa0293540:intron | 15.0% |
| !! | TCATAAAAACTTATCATTTA+AGG | + | chr2_3:44462739-44462758 | Msa0293540:intron | 15.0% |
| !! | CAAATAGAAAAAAAAATTGA+GGG | - | chr2_3:44463703-44463722 | None:intergenic | 15.0% |
| !!! | TTGCTTGAAAATTTGAAATT+TGG | + | chr2_3:44461988-44462007 | Msa0293540:five_prime_UTR | 20.0% |
| !!! | TTTTTGAAATTAATTTGGAG+TGG | + | chr2_3:44462295-44462314 | Msa0293540:intron | 20.0% |
| !! | TTAGAAACAGGTAAAATATT+TGG | + | chr2_3:44462565-44462584 | Msa0293540:intron | 20.0% |
| !!! | TTGTGTTATTTAAATCTTTC+AGG | + | chr2_3:44463221-44463240 | Msa0293540:intron | 20.0% |
| !! | CCAAATAGAAAAAAAAATTG+AGG | - | chr2_3:44463704-44463723 | None:intergenic | 20.0% |
| !!! | CCTCAATTTTTTTTTCTATT+TGG | + | chr2_3:44463701-44463720 | Msa0293540:intron | 20.0% |
| !!! | TTTTTTTTCTATTTGGATCA+TGG | + | chr2_3:44463708-44463727 | Msa0293540:intron | 20.0% |
| !!! | TTTTAAGTGCTTTTTAACTA+TGG | + | chr2_3:44463921-44463940 | Msa0293540:intron | 20.0% |
| !!! | ACTATTAGCTTAAATGAAAA+TGG | - | chr2_3:44464141-44464160 | None:intergenic | 20.0% |
| !!! | AATAAGTTTAAAACAGCTTA+TGG | + | chr2_3:44464194-44464213 | Msa0293540:intron | 20.0% |
| !! | AAAAATTACTACTATTCTGA+GGG | - | chr2_3:44464623-44464642 | None:intergenic | 20.0% |
| ! | TTGAAACCTTTATATGATTC+TGG | + | chr2_3:44462518-44462537 | Msa0293540:intron | 25.0% |
| ! | TTAGTTCCAGAATCATATAA+AGG | - | chr2_3:44462527-44462546 | None:intergenic | 25.0% |
| !! | TTTTGGTCTCTAATATTTGT+TGG | + | chr2_3:44462809-44462828 | Msa0293540:intron | 25.0% |
| ! | CTGGTAATAATTTGAGAAAA+TGG | + | chr2_3:44462971-44462990 | Msa0293540:intron | 25.0% |
| ! | GGACAAATAACAAATTAACA+AGG | - | chr2_3:44463177-44463196 | None:intergenic | 25.0% |
| !!! | TGTTAATTTGTTATTTGTCC+TGG | + | chr2_3:44463177-44463196 | Msa0293540:intron | 25.0% |
| !! | TGGACAATTGATGAATTTTT+CGG | + | chr2_3:44463597-44463616 | Msa0293540:CDS | 25.0% |
| ! | AATGCAGAAATATTAAGAAC+TGG | + | chr2_3:44463843-44463862 | Msa0293540:intron | 25.0% |
| ! | ATGAATGTTGAAAGTAGTAA+AGG | + | chr2_3:44464007-44464026 | Msa0293540:intron | 25.0% |
| ! | TTAAAACGTTTATCCAAACA+AGG | - | chr2_3:44464063-44464082 | None:intergenic | 25.0% |
| ! | TTCAAATAAGCAATTCAAAC+AGG | + | chr2_3:44464275-44464294 | Msa0293540:intron | 25.0% |
| ! | TCTTCATTGGATCTTAAAAT+AGG | - | chr2_3:44464432-44464451 | None:intergenic | 25.0% |
| !!! | TATTTTAAGATCCAATGAAG+AGG | + | chr2_3:44464431-44464450 | Msa0293540:CDS | 25.0% |
| ! | GAAAAATTACTACTATTCTG+AGG | - | chr2_3:44464624-44464643 | None:intergenic | 25.0% |
| GGAAAATTGAAACTTGAAGT+GGG | + | chr2_3:44461963-44461982 | Msa0293540:five_prime_UTR | 30.0% | |
| ATTCAGTGTAATGTTTGTGA+AGG | + | chr2_3:44462037-44462056 | Msa0293540:CDS | 30.0% | |
| ACCTGACAAATATCACATTT+AGG | - | chr2_3:44462196-44462215 | None:intergenic | 30.0% | |
| GTTCTTGATAGATTAGAAAC+AGG | + | chr2_3:44462553-44462572 | Msa0293540:intron | 30.0% | |
| TAAGGTCCTTAAATATTGTC+CGG | + | chr2_3:44462757-44462776 | Msa0293540:intron | 30.0% | |
| TTCTATGACAAGTTAGAAAG+TGG | + | chr2_3:44462860-44462879 | Msa0293540:intron | 30.0% | |
| AAATCCTTTCCCTTGAATAT+AGG | + | chr2_3:44462895-44462914 | Msa0293540:intron | 30.0% | |
| CAAGATACTCCTATATTCAA+GGG | - | chr2_3:44462907-44462926 | None:intergenic | 30.0% | |
| ACAACTACATGTGTTAATGT+CGG | + | chr2_3:44463006-44463025 | Msa0293540:intron | 30.0% | |
| ! | GGTACTATATAGGTTTCTTT+TGG | + | chr2_3:44463065-44463084 | Msa0293540:intron | 30.0% |
| CTCAACAAAAATGTTGACAA+TGG | - | chr2_3:44463148-44463167 | None:intergenic | 30.0% | |
| ! | CATTGTCAACATTTTTGTTG+AGG | + | chr2_3:44463146-44463165 | Msa0293540:intron | 30.0% |
| !! | TAAATCTTTCAGGAAGCATT+CGG | + | chr2_3:44463231-44463250 | Msa0293540:intron | 30.0% |
| ! | TTCCTCAAATTCTTTGAAGA+CGG | + | chr2_3:44463398-44463417 | Msa0293540:CDS | 30.0% |
| ! | CACAGAAGAAGATTTTGTAT+CGG | - | chr2_3:44463442-44463461 | None:intergenic | 30.0% |
| CAGTCAGAATTATAACTACA+TGG | + | chr2_3:44463632-44463651 | Msa0293540:CDS | 30.0% | |
| CAGAATTATAACTACATGGA+TGG | + | chr2_3:44463636-44463655 | Msa0293540:CDS | 30.0% | |
| ! | TTTTCTATCTTCTCTGTTCA+TGG | + | chr2_3:44463754-44463773 | Msa0293540:intron | 30.0% |
| TGTGAACATTGTCATATGAT+TGG | + | chr2_3:44463783-44463802 | Msa0293540:intron | 30.0% | |
| CTGCATTTACAATGTACATT+AGG | - | chr2_3:44463830-44463849 | None:intergenic | 30.0% | |
| !! | AAGCTAATAGTTGTTTTCAC+AGG | + | chr2_3:44464150-44464169 | Msa0293540:intron | 30.0% |
| GCCTAAATGTGATATTTGTC+AGG | + | chr2_3:44462192-44462211 | Msa0293540:CDS | 35.0% | |
| ! | AGTGTTTGAGGCACTATTTA+AGG | + | chr2_3:44462644-44462663 | Msa0293540:intron | 35.0% |
| AAGGTCCTTAAATATTGTCC+GGG | + | chr2_3:44462758-44462777 | Msa0293540:intron | 35.0% | |
| ! | TGGTCTCTAATATTTGTTGG+TGG | + | chr2_3:44462812-44462831 | Msa0293540:intron | 35.0% |
| ! | TCTAACTTGTCATAGAAGCA+AGG | - | chr2_3:44462857-44462876 | None:intergenic | 35.0% |
| TACTCCTATATTCAAGGGAA+AGG | - | chr2_3:44462902-44462921 | None:intergenic | 35.0% | |
| CCAAGATACTCCTATATTCA+AGG | - | chr2_3:44462908-44462927 | None:intergenic | 35.0% | |
| !! | CCTTGAATATAGGAGTATCT+TGG | + | chr2_3:44462905-44462924 | Msa0293540:intron | 35.0% |
| !! | TGAATATAGGAGTATCTTGG+TGG | + | chr2_3:44462908-44462927 | Msa0293540:intron | 35.0% |
| AAGTTCTTTCAAACTGAACC+AGG | - | chr2_3:44463198-44463217 | None:intergenic | 35.0% | |
| ACTCTGTCGAAAATGTGATT+TGG | + | chr2_3:44463284-44463303 | Msa0293540:CDS | 35.0% | |
| ATCCGTCTTCAAAGAATTTG+AGG | - | chr2_3:44463403-44463422 | None:intergenic | 35.0% | |
| ! | AATTCTTTGAAGACGGATTC+TGG | + | chr2_3:44463405-44463424 | Msa0293540:CDS | 35.0% |
| TCATTGTACTCAGATGATTG+AGG | - | chr2_3:44463486-44463505 | None:intergenic | 35.0% | |
| GTACAATGAAATGTTGCCTA+CGG | + | chr2_3:44463497-44463516 | Msa0293540:CDS | 35.0% | |
| TGGATGGATCATCAAATTCA+AGG | + | chr2_3:44463652-44463671 | Msa0293540:CDS | 35.0% | |
| GGATGGATCATCAAATTCAA+GGG | + | chr2_3:44463653-44463672 | Msa0293540:CDS | 35.0% | |
| ATTGGATCACTGACAAAGAT+TGG | + | chr2_3:44463801-44463820 | Msa0293540:intron | 35.0% | |
| AGTAGCACTATATCCTTGTT+TGG | + | chr2_3:44464047-44464066 | Msa0293540:intron | 35.0% | |
| ! | ATTCAAACAGGCCTTATATC+CGG | + | chr2_3:44464287-44464306 | Msa0293540:intron | 35.0% |
| AAGATCCAATGAAGAGGAAA+TGG | + | chr2_3:44464437-44464456 | Msa0293540:CDS | 35.0% | |
| GTATTCCATTTCCTCTTCAT+TGG | - | chr2_3:44464445-44464464 | None:intergenic | 35.0% | |
| ! | AATGAATACCGAGGGTTTTT+CGG | - | chr2_3:44464552-44464571 | None:intergenic | 35.0% |
| CATTATCCAATGAATACCGA+GGG | - | chr2_3:44464560-44464579 | None:intergenic | 35.0% | |
| GGATAATGCTCTATTTGTTC+CGG | + | chr2_3:44464572-44464591 | Msa0293540:CDS | 35.0% | |
| !!! | GTAGTAATTTTTCAAGACCG+CGG | + | chr2_3:44464631-44464650 | Msa0293540:CDS | 35.0% |
| ! | TGATGAAGCTGCTTTGTGTT+GGG | + | chr2_3:44462087-44462106 | Msa0293540:CDS | 40.0% |
| TGAGAAGAAGAAGCAGAAAG+AGG | - | chr2_3:44462169-44462188 | None:intergenic | 40.0% | |
| AGGTCCTTAAATATTGTCCG+GGG | + | chr2_3:44462759-44462778 | Msa0293540:intron | 40.0% | |
| CAGAAATCAGACCCAACATT+TGG | + | chr2_3:44462938-44462957 | Msa0293540:intron | 40.0% | |
| GTGTCAACGTTCCAAATGTT+GGG | - | chr2_3:44462952-44462971 | None:intergenic | 40.0% | |
| AGTGTCAACGTTCCAAATGT+TGG | - | chr2_3:44462953-44462972 | None:intergenic | 40.0% | |
| ! | AACATTTGGAACGTTGACAC+TGG | + | chr2_3:44462952-44462971 | Msa0293540:intron | 40.0% |
| ! | ACGTCTTCAATCTGAAGTGT+CGG | + | chr2_3:44463044-44463063 | Msa0293540:intron | 40.0% |
| !! | CTGAAGTGTCGGTACTATAT+AGG | + | chr2_3:44463055-44463074 | Msa0293540:intron | 40.0% |
| !!! | CGGCTATTTCTTTTGTCTAG+AGG | + | chr2_3:44463251-44463270 | Msa0293540:CDS | 40.0% |
| ACTGCAAATGCATTTGTCTC+AGG | + | chr2_3:44463315-44463334 | Msa0293540:CDS | 40.0% | |
| CTTCTCACTGGAGTAAAAGT+TGG | + | chr2_3:44463351-44463370 | Msa0293540:CDS | 40.0% | |
| ATCTTCTTCTGTGTCGAGAA+AGG | + | chr2_3:44463449-44463468 | Msa0293540:CDS | 40.0% | |
| TGGAAAATCTCCAAATCCAC+CGG | - | chr2_3:44463526-44463545 | None:intergenic | 40.0% | |
| TACTGCAGTGTTAAGCTCTA+TGG | + | chr2_3:44464335-44464354 | Msa0293540:intron | 40.0% | |
| TCTATGGTCGAATGCTTATG+AGG | + | chr2_3:44464351-44464370 | Msa0293540:intron | 40.0% | |
| TCCTTCTGATGAGTTTATGC+AGG | + | chr2_3:44464374-44464393 | Msa0293540:intron | 40.0% | |
| AATGGAATACGACGACTACA+TGG | + | chr2_3:44464455-44464474 | Msa0293540:CDS | 40.0% | |
| ! | TCCAAGATGAATCTGGAACA+CGG | - | chr2_3:44464482-44464501 | None:intergenic | 40.0% |
| GAAAAACCCTCGGTATTCAT+TGG | + | chr2_3:44464551-44464570 | Msa0293540:CDS | 40.0% | |
| GCATTATCCAATGAATACCG+AGG | - | chr2_3:44464561-44464580 | None:intergenic | 40.0% | |
| ATGCTAGTAAAGCCTATGTC+CGG | - | chr2_3:44464594-44464613 | None:intergenic | 40.0% | |
| !! | TTGTGAAGGTGCTGAAGCTA+AGG | + | chr2_3:44462051-44462070 | Msa0293540:CDS | 45.0% |
| ! | CTGATGAAGCTGCTTTGTGT+TGG | + | chr2_3:44462086-44462105 | Msa0293540:CDS | 45.0% |
| GTCTTGCTAACGAGTGTTTG+AGG | + | chr2_3:44462632-44462651 | Msa0293540:intron | 45.0% | |
| GGTCCTTAAATATTGTCCGG+GGG | + | chr2_3:44462760-44462779 | Msa0293540:intron | 45.0% | |
| ! | GCTCGATAGCATTTCGCTTT+TGG | + | chr2_3:44462792-44462811 | Msa0293540:intron | 45.0% |
| CATTTGTCTCAGGACATCAG+AGG | + | chr2_3:44463325-44463344 | Msa0293540:CDS | 45.0% | |
| CATCAGAGGTTTCTTCTCAC+TGG | + | chr2_3:44463339-44463358 | Msa0293540:CDS | 45.0% | |
| !! | TATGGTGGTGGTTCTAACTC+TGG | + | chr2_3:44463561-44463580 | Msa0293540:CDS | 45.0% |
| ! | ACTCTGGAAACATGTCACAG+TGG | + | chr2_3:44463577-44463596 | Msa0293540:CDS | 45.0% |
| TGCAATAGCTGCCGGATATA+AGG | - | chr2_3:44464301-44464320 | None:intergenic | 45.0% | |
| TTAACCACTGCAATAGCTGC+CGG | - | chr2_3:44464309-44464328 | None:intergenic | 45.0% | |
| GCCTGCATAAACTCATCAGA+AGG | - | chr2_3:44464378-44464397 | None:intergenic | 45.0% | |
| ACCGTGTTCCAGATTCATCT+TGG | + | chr2_3:44464478-44464497 | Msa0293540:CDS | 45.0% | |
| GGAACTGTCCAAGATGAATC+TGG | - | chr2_3:44464489-44464508 | None:intergenic | 45.0% | |
| TAAACTGGCCGAAAAACCCT+CGG | + | chr2_3:44464541-44464560 | Msa0293540:CDS | 45.0% | |
| GCTCTATTTGTTCCGGACAT+AGG | + | chr2_3:44464579-44464598 | Msa0293540:CDS | 45.0% | |
| !!! | TTTTTTTTTAATTTTGTATA+AGG | + | chr2_3:44462228-44462247 | Msa0293540:intron | 5.0% |
| GGCCTAGAAGCTACTGATCA+CGG | + | chr2_3:44463372-44463391 | Msa0293540:CDS | 50.0% | |
| TGCCGTGATCAGTAGCTTCT+AGG | - | chr2_3:44463377-44463396 | None:intergenic | 50.0% | |
| GAAATGTTGCCTACGGAAGC+CGG | + | chr2_3:44463504-44463523 | Msa0293540:CDS | 50.0% | |
| ! | TGGAGATTTTCCACCAGCCA+AGG | + | chr2_3:44463533-44463552 | Msa0293540:CDS | 50.0% |
| ACCACCACCATAAGACACCT+TGG | - | chr2_3:44463553-44463572 | None:intergenic | 50.0% | |
| ATATCCGGCAGCTATTGCAG+TGG | + | chr2_3:44464302-44464321 | Msa0293540:intron | 50.0% | |
| TTTAGTCCCGAAGCTGTAGG+TGG | - | chr2_3:44464525-44464544 | None:intergenic | 50.0% | |
| CAGTTTAGTCCCGAAGCTGT+AGG | - | chr2_3:44464528-44464547 | None:intergenic | 50.0% | |
| CTACAGCTTCGGGACTAAAC+TGG | + | chr2_3:44464526-44464545 | Msa0293540:CDS | 50.0% | |
| GCGCCCCCGGACAATATTTA+AGG | - | chr2_3:44462766-44462785 | None:intergenic | 55.0% | |
| CCATAAGACACCTTGGCTGG+TGG | - | chr2_3:44463546-44463565 | None:intergenic | 55.0% | |
| ! | CCACCAGCCAAGGTGTCTTA+TGG | + | chr2_3:44463543-44463562 | Msa0293540:CDS | 55.0% |
| CCACCATAAGACACCTTGGC+TGG | - | chr2_3:44463549-44463568 | None:intergenic | 55.0% | |
| ! | CCAGCCAAGGTGTCTTATGG+TGG | + | chr2_3:44463546-44463565 | Msa0293540:CDS | 55.0% |
| ! | GCCAAGGTGTCTTATGGTGG+TGG | + | chr2_3:44463549-44463568 | Msa0293540:CDS | 55.0% |
| GTAGGTGGTGAAGGGATCTG+AGG | - | chr2_3:44464510-44464529 | None:intergenic | 55.0% | |
| CCGAAGCTGTAGGTGGTGAA+GGG | - | chr2_3:44464518-44464537 | None:intergenic | 55.0% | |
| CCCTTCACCACCTACAGCTT+CGG | + | chr2_3:44464515-44464534 | Msa0293540:CDS | 55.0% | |
| CCTTCACCACCTACAGCTTC+GGG | + | chr2_3:44464516-44464535 | Msa0293540:CDS | 55.0% | |
| ATGTTGCCTACGGAAGCCGG+TGG | + | chr2_3:44463507-44463526 | Msa0293540:CDS | 60.0% | |
| !! | CCAAATCCACCGGCTTCCGT+AGG | - | chr2_3:44463516-44463535 | None:intergenic | 60.0% |
| ! | CCTACGGAAGCCGGTGGATT+TGG | + | chr2_3:44463513-44463532 | Msa0293540:CDS | 60.0% |
| CCCGAAGCTGTAGGTGGTGA+AGG | - | chr2_3:44464519-44464538 | None:intergenic | 60.0% | |
| ATCGAGCTATCGAGCGCCCC+CGG | - | chr2_3:44462779-44462798 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 44461963 | 44464665 | 44461963 | ID=Msa0293540;Name=Msa0293540 |
| chr2_3 | mRNA | 44461963 | 44464665 | 44461963 | ID=Msa0293540-mRNA-1;Parent=Msa0293540;Name=Msa0293540-mRNA-1;_AED=0.03;_eAED=0.03;_QI=68|1|0.33|1|1|1|3|0|294 |
| chr2_3 | exon | 44461963 | 44462213 | 44461963 | ID=Msa0293540-mRNA-1:exon:13988;Parent=Msa0293540-mRNA-1 |
| chr2_3 | exon | 44463243 | 44463674 | 44463243 | ID=Msa0293540-mRNA-1:exon:13989;Parent=Msa0293540-mRNA-1 |
| chr2_3 | exon | 44464396 | 44464665 | 44464396 | ID=Msa0293540-mRNA-1:exon:13990;Parent=Msa0293540-mRNA-1 |
| chr2_3 | five_prime_UTR | 44461963 | 44462030 | 44461963 | ID=Msa0293540-mRNA-1:five_prime_utr;Parent=Msa0293540-mRNA-1 |
| chr2_3 | CDS | 44462031 | 44462213 | 44462031 | ID=Msa0293540-mRNA-1:cds;Parent=Msa0293540-mRNA-1 |
| chr2_3 | CDS | 44463243 | 44463674 | 44463243 | ID=Msa0293540-mRNA-1:cds;Parent=Msa0293540-mRNA-1 |
| chr2_3 | CDS | 44464396 | 44464665 | 44464396 | ID=Msa0293540-mRNA-1:cds;Parent=Msa0293540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
