Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0332410 | XP_013464521.1 | 98.951 | 286 | 3 | 0 | 1 | 286 | 1 | 286 | 0.0 | 594 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0332410 | sp|Q9SYM2|BBX22_ARATH | 52.797 | 286 | 113 | 4 | 1 | 273 | 1 | 277 | 1.06e-92 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0332410 | TF | DBB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001810 | Msa0332410 | 0.855205 | 7.377086e-62 | -8.615850e-47 |
| Msa0213980 | Msa0332410 | 0.905646 | 3.443799e-80 | -8.615850e-47 |
| Msa0254340 | Msa0332410 | 0.935362 | 9.550509e-97 | -8.615850e-47 |
| Msa0293540 | Msa0332410 | 0.842638 | 2.288142e-58 | -8.615850e-47 |
| Msa0332410 | Msa0574910 | 0.841623 | 4.247125e-58 | -8.615850e-47 |
| Msa0332410 | Msa0930760 | 0.849626 | 2.866184e-60 | -8.615850e-47 |
| Msa0332410 | Msa1039820 | 0.863506 | 2.371923e-64 | -8.615850e-47 |
| Msa0332410 | Msa1084030 | 0.802676 | 5.010837e-49 | -8.615850e-47 |
| Msa0332410 | Msa1128260 | 0.801765 | 7.715853e-49 | -8.615850e-47 |
| Msa0332410 | Msa1212190 | 0.805315 | 1.416670e-49 | -8.615850e-47 |
| Msa0332410 | Msa1212270 | 0.801852 | 7.404379e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0332410 | MtrunA17_Chr2g0314671 | 98.951 | 286 | 3 | 0 | 1 | 286 | 1 | 286 | 0.0 | 594 |
| Msa0332410 | MtrunA17_Chr4g0033641 | 60.550 | 109 | 43 | 0 | 1 | 109 | 1 | 109 | 6.85e-43 | 147 |
| Msa0332410 | MtrunA17_Chr2g0329511 | 40.104 | 192 | 80 | 3 | 1 | 192 | 1 | 157 | 3.01e-42 | 145 |
| Msa0332410 | MtrunA17_Chr3g0145061 | 50.685 | 146 | 71 | 1 | 1 | 145 | 1 | 146 | 3.66e-41 | 142 |
| Msa0332410 | MtrunA17_Chr4g0035651 | 54.717 | 106 | 47 | 1 | 1 | 105 | 1 | 106 | 6.28e-36 | 129 |
| Msa0332410 | MtrunA17_Chr3g0142221 | 54.717 | 106 | 46 | 1 | 1 | 104 | 1 | 106 | 7.36e-36 | 128 |
| Msa0332410 | MtrunA17_Chr1g0155811 | 54.286 | 105 | 47 | 1 | 1 | 104 | 1 | 105 | 1.33e-35 | 129 |
| Msa0332410 | MtrunA17_Chr5g0405151 | 50.000 | 104 | 49 | 2 | 1 | 104 | 1 | 101 | 1.35e-26 | 103 |
| Msa0332410 | MtrunA17_Chr1g0150471 | 41.667 | 96 | 47 | 1 | 5 | 100 | 6 | 92 | 7.93e-19 | 85.1 |
| Msa0332410 | MtrunA17_Chr3g0136701 | 44.792 | 96 | 44 | 1 | 5 | 100 | 6 | 92 | 1.45e-18 | 84.0 |
| Msa0332410 | MtrunA17_Chr7g0220721 | 43.478 | 92 | 43 | 1 | 5 | 96 | 26 | 108 | 1.29e-17 | 82.4 |
| Msa0332410 | MtrunA17_Chr4g0072871 | 38.043 | 92 | 48 | 1 | 5 | 96 | 22 | 104 | 1.57e-14 | 73.2 |
| Msa0332410 | MtrunA17_Chr5g0429341 | 33.333 | 96 | 55 | 1 | 1 | 96 | 1 | 87 | 1.73e-11 | 64.3 |
| Msa0332410 | MtrunA17_Chr2g0322941 | 29.747 | 158 | 89 | 4 | 1 | 147 | 40 | 186 | 6.34e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0332410 | AT1G78600.1 | 52.797 | 286 | 113 | 4 | 1 | 273 | 1 | 277 | 1.07e-93 | 280 |
| Msa0332410 | AT1G78600.2 | 48.693 | 306 | 115 | 5 | 1 | 273 | 1 | 297 | 3.36e-91 | 274 |
| Msa0332410 | AT1G06040.2 | 64.220 | 109 | 39 | 0 | 1 | 109 | 1 | 109 | 2.17e-46 | 154 |
| Msa0332410 | AT1G06040.1 | 64.220 | 109 | 39 | 0 | 1 | 109 | 1 | 109 | 9.01e-46 | 155 |
| Msa0332410 | AT2G31380.1 | 61.468 | 109 | 42 | 0 | 1 | 109 | 1 | 109 | 4.17e-42 | 145 |
| Msa0332410 | AT4G10240.1 | 49.701 | 167 | 62 | 5 | 1 | 161 | 1 | 151 | 1.07e-40 | 139 |
| Msa0332410 | AT1G75540.1 | 40.090 | 222 | 114 | 6 | 1 | 211 | 1 | 214 | 9.61e-36 | 131 |
| Msa0332410 | AT4G39070.1 | 49.640 | 139 | 68 | 2 | 1 | 138 | 1 | 138 | 2.20e-35 | 128 |
| Msa0332410 | AT2G21320.1 | 50.000 | 104 | 49 | 2 | 1 | 104 | 1 | 101 | 2.53e-26 | 102 |
| Msa0332410 | AT4G38960.1 | 40.580 | 138 | 78 | 3 | 1 | 138 | 1 | 134 | 3.54e-26 | 102 |
| Msa0332410 | AT4G38960.6 | 40.580 | 138 | 78 | 3 | 1 | 138 | 1 | 134 | 3.54e-26 | 102 |
| Msa0332410 | AT5G15850.1 | 42.857 | 98 | 47 | 1 | 5 | 102 | 12 | 100 | 2.78e-18 | 84.3 |
| Msa0332410 | AT5G24930.1 | 42.708 | 96 | 46 | 1 | 5 | 100 | 6 | 92 | 1.03e-17 | 82.8 |
| Msa0332410 | AT2G24790.1 | 41.667 | 96 | 47 | 1 | 5 | 100 | 8 | 94 | 1.11e-17 | 82.0 |
| Msa0332410 | AT4G38960.3 | 30.939 | 181 | 78 | 4 | 1 | 138 | 1 | 177 | 1.20e-17 | 80.5 |
| Msa0332410 | AT3G02380.1 | 43.478 | 92 | 43 | 1 | 5 | 96 | 16 | 98 | 1.79e-17 | 82.0 |
| Msa0332410 | AT2G24790.2 | 41.667 | 96 | 47 | 1 | 5 | 100 | 8 | 94 | 2.60e-17 | 79.7 |
| Msa0332410 | AT5G15840.1 | 39.785 | 93 | 47 | 1 | 5 | 97 | 20 | 103 | 5.55e-16 | 77.8 |
| Msa0332410 | AT5G15840.2 | 40.217 | 92 | 46 | 1 | 5 | 96 | 20 | 102 | 1.08e-15 | 75.9 |
| Msa0332410 | AT2G47890.3 | 38.710 | 93 | 48 | 1 | 5 | 97 | 13 | 96 | 9.64e-13 | 67.8 |
| Msa0332410 | AT2G47890.1 | 38.710 | 93 | 48 | 1 | 5 | 97 | 13 | 96 | 1.02e-12 | 68.2 |
| Msa0332410 | AT2G47890.2 | 38.710 | 93 | 48 | 1 | 5 | 97 | 13 | 96 | 2.34e-12 | 65.9 |
| Msa0332410 | AT5G57660.1 | 34.783 | 92 | 47 | 2 | 5 | 96 | 22 | 100 | 3.74e-11 | 63.5 |
| Msa0332410 | AT4G38960.5 | 33.981 | 103 | 64 | 3 | 36 | 138 | 3 | 101 | 5.50e-11 | 60.5 |
| Msa0332410 | AT4G38960.2 | 33.981 | 103 | 64 | 3 | 36 | 138 | 3 | 101 | 5.50e-11 | 60.5 |
Find 60 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTTGAAAATTTGAAATT+TGG | 0.187546 | 2_4:-49472158 | Msa0332410:five_prime_UTR |
| CCTTCACCACCTACAGCTTC+TGG | 0.211842 | 2_4:-49469642 | Msa0332410:CDS |
| TCTTCATTGGATCTTAAAAT+AGG | 0.258790 | 2_4:+49469729 | None:intergenic |
| CCACCAGCCAAGGTGTCTTA+TGG | 0.275750 | 2_4:-49470594 | Msa0332410:CDS |
| CCTACCGAAGCCGGAGGATT+TGG | 0.277213 | 2_4:-49470624 | Msa0332410:CDS |
| GTATTCCATTTCCTCTTCAT+TGG | 0.304492 | 2_4:+49469716 | None:intergenic |
| AATTCGTTGAAGACAGATTC+TGG | 0.304552 | 2_4:-49470732 | Msa0332410:CDS |
| CGATAATGCTCTATTTGTTC+CGG | 0.320546 | 2_4:-49469586 | Msa0332410:CDS |
| CTACAGCTTCTGGGCTAAAC+TGG | 0.345568 | 2_4:-49469632 | Msa0332410:CDS |
| TTCCGTGATCAGTAGCTTCT+AGG | 0.348013 | 2_4:+49470763 | None:intergenic |
| AAGATCCAATGAAGAGGAAA+TGG | 0.393956 | 2_4:-49469721 | Msa0332410:CDS |
| GGAACTGTCCAAGACGAATC+TGG | 0.395347 | 2_4:+49469672 | None:intergenic |
| ATCTGTCTTCAACGAATTTG+AGG | 0.404754 | 2_4:+49470737 | None:intergenic |
| TGATGAAGCTGCTTTGTGTT+GGG | 0.412693 | 2_4:-49472059 | Msa0332410:CDS |
| ACCTGACAAATATCACATTT+AGG | 0.415653 | 2_4:+49471953 | None:intergenic |
| ATCTCCAAATCCTCCGGCTT+CGG | 0.419987 | 2_4:+49470620 | None:intergenic |
| ATCTTCTTCTGTCTCGAGAA+AGG | 0.428233 | 2_4:-49470688 | Msa0332410:CDS |
| TAAATCTTTCAGGAAGCATT+CGG | 0.445968 | 2_4:-49470906 | Msa0332410:intron |
| CTTCACCACCTACAGCTTCT+GGG | 0.451609 | 2_4:-49469641 | Msa0332410:CDS |
| GCCTAAATGTGATATTTGTC+AGG | 0.459129 | 2_4:-49471954 | Msa0332410:intron |
| CTGATGAAGCTGCTTTGTGT+TGG | 0.463397 | 2_4:-49472060 | Msa0332410:CDS |
| GCTCTATTTGTTCCGGACAT+TGG | 0.477192 | 2_4:-49469579 | Msa0332410:CDS |
| TATGGTGGTGGTTCTAACTC+TGG | 0.487845 | 2_4:-49470576 | Msa0332410:CDS |
| GAAATGTTGCCTACCGAAGC+CGG | 0.489819 | 2_4:-49470633 | Msa0332410:CDS |
| TGGATGGATCATCAAATTCA+AGG | 0.498918 | 2_4:-49470485 | Msa0332410:CDS |
| CAGTCAGAATTATAACTACA+TGG | 0.503150 | 2_4:-49470505 | Msa0332410:CDS |
| GCCAAGGTGTCTTATGGTGG+TGG | 0.508324 | 2_4:-49470588 | Msa0332410:CDS |
| CCACCATAAGACACCTTGGC+TGG | 0.515474 | 2_4:+49470591 | None:intergenic |
| ACTGCAAATGCATTTGTCTC+AGG | 0.516070 | 2_4:-49470822 | Msa0332410:CDS |
| TGGAAAATCTCCAAATCCTC+CGG | 0.517904 | 2_4:+49470614 | None:intergenic |
| CAGAATTATAACTACATGGA+TGG | 0.518101 | 2_4:-49470501 | Msa0332410:CDS |
| CCAGAAGCTGTAGGTGGTGA+AGG | 0.518650 | 2_4:+49469642 | None:intergenic |
| GGGAAAATTGAAACTTGAAG+TGG | 0.523387 | 2_4:-49472184 | Msa0332410:five_prime_UTR |
| ACCGTGTTCCAGATTCGTCT+TGG | 0.527866 | 2_4:-49469680 | Msa0332410:CDS |
| GGAAAATTGAAACTTGAAGT+GGG | 0.530897 | 2_4:-49472183 | Msa0332410:five_prime_UTR |
| TCATTGTACTCAGATGATTG+AGG | 0.549321 | 2_4:+49470654 | None:intergenic |
| TGAGAAGAAGAAGCAGAAAG+AGG | 0.549965 | 2_4:+49471980 | None:intergenic |
| CTTCTCACCGGTGTAAAAGT+CGG | 0.551046 | 2_4:-49470786 | Msa0332410:CDS |
| AATGGAATACGACGACTACA+TGG | 0.559471 | 2_4:-49469703 | Msa0332410:CDS |
| ATGCTAGTAAAGCCAATGTC+CGG | 0.566880 | 2_4:+49469567 | None:intergenic |
| CATCAAAGGTTTCTTCTCAC+CGG | 0.573699 | 2_4:-49470798 | Msa0332410:CDS |
| CCAGCCAAGGTGTCTTATGG+TGG | 0.576805 | 2_4:-49470591 | Msa0332410:CDS |
| CCAAATCCTCCGGCTTCGGT+AGG | 0.580489 | 2_4:+49470624 | None:intergenic |
| CATTTGTCTCAGGACATCAA+AGG | 0.584028 | 2_4:-49470812 | Msa0332410:CDS |
| CAGAAGCTGTAGGTGGTGAA+GGG | 0.591243 | 2_4:+49469643 | None:intergenic |
| ACCACCACCATAAGACACCT+TGG | 0.592536 | 2_4:+49470587 | None:intergenic |
| TTGTGAAGGTGCTGAAGCTA+AGG | 0.593143 | 2_4:-49472095 | Msa0332410:CDS |
| CCATAAGACACCTTGGCTGG+TGG | 0.594137 | 2_4:+49470594 | None:intergenic |
| GGCCTAGAAGCTACTGATCA+CGG | 0.598771 | 2_4:-49470765 | Msa0332410:CDS |
| GGATGGATCATCAAATTCAA+GGG | 0.601507 | 2_4:-49470484 | Msa0332410:intron |
| CATTATCGAATGAATACCGA+GGG | 0.607602 | 2_4:+49469601 | None:intergenic |
| CAGTTTAGCCCAGAAGCTGT+AGG | 0.621413 | 2_4:+49469633 | None:intergenic |
| ATTCAGTGTAATGTTTGTGA+AGG | 0.627076 | 2_4:-49472109 | Msa0332410:CDS |
| GTAGGTGGTGAAGGGATCTG+AGG | 0.637306 | 2_4:+49469651 | None:intergenic |
| TCCAAGACGAATCTGGAACA+CGG | 0.671574 | 2_4:+49469679 | None:intergenic |
| TTTAGCCCAGAAGCTGTAGG+TGG | 0.676278 | 2_4:+49469636 | None:intergenic |
| GAGTTTATGCAGGCTGACAG+TGG | 0.687400 | 2_4:-49469774 | Msa0332410:intron |
| GCATTATCGAATGAATACCG+AGG | 0.703310 | 2_4:+49469600 | None:intergenic |
| ATGTTGCCTACCGAAGCCGG+AGG | 0.732134 | 2_4:-49470630 | Msa0332410:CDS |
| ACTCTGGAAACATGTCACAG+TGG | 0.763112 | 2_4:-49470560 | Msa0332410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTGATTTATTTGAA+TGG | - | chr2_4:49469627-49469646 | Msa0332410:CDS | 10.0% |
| !!! | GTATTTTTTTGAAATTAATT+TGG | - | chr2_4:49469649-49469668 | Msa0332410:CDS | 10.0% |
| !! | AGTTCAAAAATATAAATAAA+AGG | + | chr2_4:49469838-49469857 | None:intergenic | 10.0% |
| !!! | TTTAATTTTGTATAAGGTTT+TGG | - | chr2_4:49469595-49469614 | Msa0332410:CDS | 15.0% |
| !! | CATGAAAAAGTAAAAAAATT+TGG | - | chr2_4:49469684-49469703 | Msa0332410:CDS | 15.0% |
| !!! | TGAAATCTATAATTTTGTAT+AGG | - | chr2_4:49469975-49469994 | Msa0332410:intron | 15.0% |
| !!! | GAAATCTATAATTTTGTATA+GGG | - | chr2_4:49469976-49469995 | Msa0332410:intron | 15.0% |
| !! | TCATAAAAACTTATCATTTA+AGG | - | chr2_4:49470105-49470124 | Msa0332410:intron | 15.0% |
| !!! | TTTTGTTATTTAAATCTTTC+AGG | - | chr2_4:49470585-49470604 | Msa0332410:CDS | 15.0% |
| !!! | TTGCTTGAAAATTTGAAATT+TGG | - | chr2_4:49469343-49469362 | Msa0332410:CDS | 20.0% |
| !!! | TTTTTGAAATTAATTTGGAG+TGG | - | chr2_4:49469654-49469673 | Msa0332410:CDS | 20.0% |
| !! | TTAGAAACAGGTAAAATATT+TGG | - | chr2_4:49469931-49469950 | Msa0332410:intron | 20.0% |
| !! | CAAATTAAAAAAGTTCTTGA+CGG | + | chr2_4:49470463-49470482 | None:intergenic | 20.0% |
| !! | CAAATAGAAAAAAAAACTGA+GGG | + | chr2_4:49471067-49471086 | None:intergenic | 20.0% |
| !!! | TTTTTTTTCTATTTGGATCA+TGG | - | chr2_4:49471072-49471091 | Msa0332410:intron | 20.0% |
| !!! | TTTTAAGTGCTTTTTAACTA+TGG | - | chr2_4:49471285-49471304 | Msa0332410:intron | 20.0% |
| !!! | AATAAGTTTAAAACAGCTTA+TGG | - | chr2_4:49471558-49471577 | Msa0332410:intron | 20.0% |
| !! | AAAAATTACTACTATTCTGA+GGG | + | chr2_4:49471966-49471985 | None:intergenic | 20.0% |
| ! | TTGAAACCTTTATATGATTC+TGG | - | chr2_4:49469884-49469903 | Msa0332410:intron | 25.0% |
| ! | TTAGTTCCAGAATCATATAA+AGG | + | chr2_4:49469893-49469912 | None:intergenic | 25.0% |
| !! | TTTTGGTCTCTAATATTTGT+TGG | - | chr2_4:49470175-49470194 | Msa0332410:intron | 25.0% |
| ! | CTGGTAATAATTTGAGAAAA+TGG | - | chr2_4:49470336-49470355 | Msa0332410:intron | 25.0% |
| ! | TAATTGAATACAACTACTTG+TGG | - | chr2_4:49470362-49470381 | Msa0332410:intron | 25.0% |
| !! | TGGACAATTGATGAATTTTT+CGG | - | chr2_4:49470961-49470980 | Msa0332410:intron | 25.0% |
| ! | CCAAATAGAAAAAAAAACTG+AGG | + | chr2_4:49471068-49471087 | None:intergenic | 25.0% |
| !!! | CCTCAGTTTTTTTTTCTATT+TGG | - | chr2_4:49471065-49471084 | Msa0332410:intron | 25.0% |
| ! | AATGCAGAAATATTAAGAAC+TGG | - | chr2_4:49471207-49471226 | Msa0332410:intron | 25.0% |
| ! | ATGAATGTTGAAAGTAGTAA+AGG | - | chr2_4:49471371-49471390 | Msa0332410:intron | 25.0% |
| ! | TTAAAACGTTTATCCAAACA+AGG | + | chr2_4:49471427-49471446 | None:intergenic | 25.0% |
| ! | TTATATTCAAGTGCTTATGT+CGG | - | chr2_4:49471618-49471637 | Msa0332410:intron | 25.0% |
| ! | TCTTCATTGGATCTTAAAAT+AGG | + | chr2_4:49471775-49471794 | None:intergenic | 25.0% |
| !!! | TATTTTAAGATCCAATGAAG+AGG | - | chr2_4:49471774-49471793 | Msa0332410:intron | 25.0% |
| ! | GAAAAATTACTACTATTCTG+AGG | + | chr2_4:49471967-49471986 | None:intergenic | 25.0% |
| ! | AGCATTGTCTATAAGTTATA+GGG | + | chr2_4:49472132-49472151 | None:intergenic | 25.0% |
| GGAAAATTGAAACTTGAAGT+GGG | - | chr2_4:49469318-49469337 | Msa0332410:CDS | 30.0% | |
| ATTCAGTGTAATGTTTGTGA+AGG | - | chr2_4:49469392-49469411 | Msa0332410:intron | 30.0% | |
| ACCTGACAAATATCACATTT+AGG | + | chr2_4:49469551-49469570 | None:intergenic | 30.0% | |
| GTTCTTGATAGATTAGAAAC+AGG | - | chr2_4:49469919-49469938 | Msa0332410:intron | 30.0% | |
| TAAGGTCCTTAAATATTGTC+CGG | - | chr2_4:49470123-49470142 | Msa0332410:intron | 30.0% | |
| TTCTATGACAAGTTAGAAAG+TGG | - | chr2_4:49470226-49470245 | Msa0332410:intron | 30.0% | |
| AAATCCTTTCCCTTGAATAT+AGG | - | chr2_4:49470261-49470280 | Msa0332410:intron | 30.0% | |
| CAAGATACTCCTATATTCAA+GGG | + | chr2_4:49470273-49470292 | None:intergenic | 30.0% | |
| CTCAACAAAAATGTTGACAA+TGG | + | chr2_4:49470512-49470531 | None:intergenic | 30.0% | |
| ! | CATTGTCAACATTTTTGTTG+AGG | - | chr2_4:49470510-49470529 | Msa0332410:CDS | 30.0% |
| GGACAAATAACCAATTAACA+AGG | + | chr2_4:49470541-49470560 | None:intergenic | 30.0% | |
| TGTTAATTGGTTATTTGTCC+TGG | - | chr2_4:49470541-49470560 | Msa0332410:CDS | 30.0% | |
| !! | TAAATCTTTCAGGAAGCATT+CGG | - | chr2_4:49470595-49470614 | Msa0332410:CDS | 30.0% |
| ! | GACAGAAGAAGATTTTGTAT+CGG | + | chr2_4:49470806-49470825 | None:intergenic | 30.0% |
| CAGTCAGAATTATAACTACA+TGG | - | chr2_4:49470996-49471015 | Msa0332410:intron | 30.0% | |
| CAGAATTATAACTACATGGA+TGG | - | chr2_4:49471000-49471019 | Msa0332410:intron | 30.0% | |
| ! | TTTTCTATCTTCTCTGTTCA+TGG | - | chr2_4:49471118-49471137 | Msa0332410:intron | 30.0% |
| ATTAGATCACTGACAAAGAT+TGG | - | chr2_4:49471165-49471184 | Msa0332410:intron | 30.0% | |
| CTGCATTTACAATGTACATT+AGG | + | chr2_4:49471194-49471213 | None:intergenic | 30.0% | |
| !! | AAGCTAATAGTTGTTTTCAC+AGG | - | chr2_4:49471514-49471533 | Msa0332410:intron | 30.0% |
| TCAAATAAGCCAATTCAAAC+AGG | - | chr2_4:49471650-49471669 | Msa0332410:intron | 30.0% | |
| TTTATGGTTGAATGCTTATG+CGG | - | chr2_4:49471694-49471713 | Msa0332410:intron | 30.0% | |
| TGTCTATAAGTTATAGGGAA+GGG | + | chr2_4:49472127-49472146 | None:intergenic | 30.0% | |
| TTGTCTATAAGTTATAGGGA+AGG | + | chr2_4:49472128-49472147 | None:intergenic | 30.0% | |
| ! | GAGCATTGTCTATAAGTTAT+AGG | + | chr2_4:49472133-49472152 | None:intergenic | 30.0% |
| GCCTAAATGTGATATTTGTC+AGG | - | chr2_4:49469547-49469566 | Msa0332410:CDS | 35.0% | |
| ! | AGTGTTTGAGGCACTATTTA+AGG | - | chr2_4:49470010-49470029 | Msa0332410:intron | 35.0% |
| AAGGTCCTTAAATATTGTCC+GGG | - | chr2_4:49470124-49470143 | Msa0332410:intron | 35.0% | |
| ! | TGGTCTCTAATATTTGTTGG+TGG | - | chr2_4:49470178-49470197 | Msa0332410:intron | 35.0% |
| ! | TCTAACTTGTCATAGAAGCA+AGG | + | chr2_4:49470223-49470242 | None:intergenic | 35.0% |
| TACTCCTATATTCAAGGGAA+AGG | + | chr2_4:49470268-49470287 | None:intergenic | 35.0% | |
| CCAAGATACTCCTATATTCA+AGG | + | chr2_4:49470274-49470293 | None:intergenic | 35.0% | |
| !! | CCTTGAATATAGGAGTATCT+TGG | - | chr2_4:49470271-49470290 | Msa0332410:intron | 35.0% |
| !! | TGAATATAGGAGTATCTTGG+TGG | - | chr2_4:49470274-49470293 | Msa0332410:intron | 35.0% |
| ! | ACAACTACTTGTGGTAATGT+CGG | - | chr2_4:49470371-49470390 | Msa0332410:intron | 35.0% |
| AGTGCTATATAGGTTTCTTG+TGG | - | chr2_4:49470430-49470449 | Msa0332410:intron | 35.0% | |
| TGAGGTAGAACCTTGTTAAT+TGG | - | chr2_4:49470528-49470547 | Msa0332410:CDS | 35.0% | |
| AAGTTCTTTCAAACTGAACC+AGG | + | chr2_4:49470562-49470581 | None:intergenic | 35.0% | |
| ATCTGTCTTCAACGAATTTG+AGG | + | chr2_4:49470767-49470786 | None:intergenic | 35.0% | |
| AATTCGTTGAAGACAGATTC+TGG | - | chr2_4:49470769-49470788 | Msa0332410:CDS | 35.0% | |
| TCATTGTACTCAGATGATTG+AGG | + | chr2_4:49470850-49470869 | None:intergenic | 35.0% | |
| TGGATGGATCATCAAATTCA+AGG | - | chr2_4:49471016-49471035 | Msa0332410:intron | 35.0% | |
| GGATGGATCATCAAATTCAA+GGG | - | chr2_4:49471017-49471036 | Msa0332410:intron | 35.0% | |
| AGTAGCAGTATATCCTTGTT+TGG | - | chr2_4:49471411-49471430 | Msa0332410:intron | 35.0% | |
| AAGATCCAATGAAGAGGAAA+TGG | - | chr2_4:49471780-49471799 | Msa0332410:intron | 35.0% | |
| GTATTCCATTTCCTCTTCAT+TGG | + | chr2_4:49471788-49471807 | None:intergenic | 35.0% | |
| !!! | AATGAATACCGAGGGTTTTT+TGG | + | chr2_4:49471895-49471914 | None:intergenic | 35.0% |
| CATTATCGAATGAATACCGA+GGG | + | chr2_4:49471903-49471922 | None:intergenic | 35.0% | |
| CGATAATGCTCTATTTGTTC+CGG | - | chr2_4:49471915-49471934 | Msa0332410:intron | 35.0% | |
| ! | TGATGAAGCTGCTTTGTGTT+GGG | - | chr2_4:49469442-49469461 | Msa0332410:intron | 40.0% |
| TGAGAAGAAGAAGCAGAAAG+AGG | + | chr2_4:49469524-49469543 | None:intergenic | 40.0% | |
| AGGTCCTTAAATATTGTCCG+GGG | - | chr2_4:49470125-49470144 | Msa0332410:intron | 40.0% | |
| ACAGAAATCAGACCCAACAT+TGG | - | chr2_4:49470303-49470322 | Msa0332410:intron | 40.0% | |
| AGTGTCAACGTTCCAATGTT+GGG | + | chr2_4:49470318-49470337 | None:intergenic | 40.0% | |
| ! | CTGAAGTGTCAGTGCTATAT+AGG | - | chr2_4:49470420-49470439 | Msa0332410:intron | 40.0% |
| !!! | CGGCTATTTCTTTTGTCTAG+AGG | - | chr2_4:49470615-49470634 | Msa0332410:CDS | 40.0% |
| ACTGCAAATGCATTTGTCTC+AGG | - | chr2_4:49470679-49470698 | Msa0332410:CDS | 40.0% | |
| CATTTGTCTCAGGACATCAA+AGG | - | chr2_4:49470689-49470708 | Msa0332410:CDS | 40.0% | |
| CATCAAAGGTTTCTTCTCAC+CGG | - | chr2_4:49470703-49470722 | Msa0332410:CDS | 40.0% | |
| ATCTTCTTCTGTCTCGAGAA+AGG | - | chr2_4:49470813-49470832 | Msa0332410:CDS | 40.0% | |
| TGGAAAATCTCCAAATCCTC+CGG | + | chr2_4:49470890-49470909 | None:intergenic | 40.0% | |
| AATCGCTTAACACTGCAGTA+AGG | + | chr2_4:49471676-49471695 | None:intergenic | 40.0% | |
| CTGCAGTGTTAAGCGATTTA+TGG | - | chr2_4:49471678-49471697 | Msa0332410:intron | 40.0% | |
| TCCTTCTGATGAGTTTATGC+AGG | - | chr2_4:49471717-49471736 | Msa0332410:intron | 40.0% | |
| AATGGAATACGACGACTACA+TGG | - | chr2_4:49471798-49471817 | Msa0332410:intron | 40.0% | |
| TAAACTGGCCAAAAAACCCT+CGG | - | chr2_4:49471884-49471903 | Msa0332410:intron | 40.0% | |
| GCATTATCGAATGAATACCG+AGG | + | chr2_4:49471904-49471923 | None:intergenic | 40.0% | |
| ATGCTAGTAAAGCCAATGTC+CGG | + | chr2_4:49471937-49471956 | None:intergenic | 40.0% | |
| !! | TTGTGAAGGTGCTGAAGCTA+AGG | - | chr2_4:49469406-49469425 | Msa0332410:intron | 45.0% |
| ! | CTGATGAAGCTGCTTTGTGT+TGG | - | chr2_4:49469441-49469460 | Msa0332410:intron | 45.0% |
| GTCTTGCTAACGAGTGTTTG+AGG | - | chr2_4:49469998-49470017 | Msa0332410:intron | 45.0% | |
| GGTCCTTAAATATTGTCCGG+GGG | - | chr2_4:49470126-49470145 | Msa0332410:intron | 45.0% | |
| ! | GCTCGATAGCATTTCGCTTT+TGG | - | chr2_4:49470158-49470177 | Msa0332410:intron | 45.0% |
| CAGTGTCAACGTTCCAATGT+TGG | + | chr2_4:49470319-49470338 | None:intergenic | 45.0% | |
| CAACATTGGAACGTTGACAC+TGG | - | chr2_4:49470317-49470336 | Msa0332410:intron | 45.0% | |
| CTTCTCACCGGTGTAAAAGT+CGG | - | chr2_4:49470715-49470734 | Msa0332410:CDS | 45.0% | |
| !! | TTCTAGGCCGACTTTTACAC+CGG | + | chr2_4:49470725-49470744 | None:intergenic | 45.0% |
| TTCCGTGATCAGTAGCTTCT+AGG | + | chr2_4:49470741-49470760 | None:intergenic | 45.0% | |
| !! | TATGGTGGTGGTTCTAACTC+TGG | - | chr2_4:49470925-49470944 | Msa0332410:intron | 45.0% |
| ! | ACTCTGGAAACATGTCACAG+TGG | - | chr2_4:49470941-49470960 | Msa0332410:intron | 45.0% |
| GCAGTAAGGCCTGTTTGAAT+TGG | + | chr2_4:49471662-49471681 | None:intergenic | 45.0% | |
| GCCTGCATAAACTCATCAGA+AGG | + | chr2_4:49471721-49471740 | None:intergenic | 45.0% | |
| ! | TCCAAGACGAATCTGGAACA+CGG | + | chr2_4:49471825-49471844 | None:intergenic | 45.0% |
| GCTCTATTTGTTCCGGACAT+TGG | - | chr2_4:49471922-49471941 | Msa0332410:intron | 45.0% | |
| AGTTATAGGGAAGGGATCAG+AGG | + | chr2_4:49472119-49472138 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTAATTTTGTATA+AGG | - | chr2_4:49469589-49469608 | Msa0332410:CDS | 5.0% |
| GGCCTAGAAGCTACTGATCA+CGG | - | chr2_4:49470736-49470755 | Msa0332410:CDS | 50.0% | |
| GAAATGTTGCCTACCGAAGC+CGG | - | chr2_4:49470868-49470887 | Msa0332410:CDS | 50.0% | |
| ATCTCCAAATCCTCCGGCTT+CGG | + | chr2_4:49470884-49470903 | None:intergenic | 50.0% | |
| ! | TGGAGATTTTCCACCAGCCA+AGG | - | chr2_4:49470897-49470916 | Msa0332410:CDS | 50.0% |
| ACCACCACCATAAGACACCT+TGG | + | chr2_4:49470917-49470936 | None:intergenic | 50.0% | |
| GAGTTTATGCAGGCTGACAG+TGG | - | chr2_4:49471727-49471746 | Msa0332410:intron | 50.0% | |
| ACCGTGTTCCAGATTCGTCT+TGG | - | chr2_4:49471821-49471840 | Msa0332410:intron | 50.0% | |
| GGAACTGTCCAAGACGAATC+TGG | + | chr2_4:49471832-49471851 | None:intergenic | 50.0% | |
| CAGAAGCTGTAGGTGGTGAA+GGG | + | chr2_4:49471861-49471880 | None:intergenic | 50.0% | |
| CTTCACCACCTACAGCTTCT+GGG | - | chr2_4:49471860-49471879 | Msa0332410:intron | 50.0% | |
| TTTAGCCCAGAAGCTGTAGG+TGG | + | chr2_4:49471868-49471887 | None:intergenic | 50.0% | |
| CAGTTTAGCCCAGAAGCTGT+AGG | + | chr2_4:49471871-49471890 | None:intergenic | 50.0% | |
| CTACAGCTTCTGGGCTAAAC+TGG | - | chr2_4:49471869-49471888 | Msa0332410:intron | 50.0% | |
| GCGCCCCCGGACAATATTTA+AGG | + | chr2_4:49470132-49470151 | None:intergenic | 55.0% | |
| CCATAAGACACCTTGGCTGG+TGG | + | chr2_4:49470910-49470929 | None:intergenic | 55.0% | |
| ! | CCACCAGCCAAGGTGTCTTA+TGG | - | chr2_4:49470907-49470926 | Msa0332410:intron | 55.0% |
| CCACCATAAGACACCTTGGC+TGG | + | chr2_4:49470913-49470932 | None:intergenic | 55.0% | |
| ! | CCAGCCAAGGTGTCTTATGG+TGG | - | chr2_4:49470910-49470929 | Msa0332410:intron | 55.0% |
| ! | GCCAAGGTGTCTTATGGTGG+TGG | - | chr2_4:49470913-49470932 | Msa0332410:intron | 55.0% |
| GTAGGTGGTGAAGGGATCTG+AGG | + | chr2_4:49471853-49471872 | None:intergenic | 55.0% | |
| CCAGAAGCTGTAGGTGGTGA+AGG | + | chr2_4:49471862-49471881 | None:intergenic | 55.0% | |
| CCTTCACCACCTACAGCTTC+TGG | - | chr2_4:49471859-49471878 | Msa0332410:intron | 55.0% | |
| ATGTTGCCTACCGAAGCCGG+AGG | - | chr2_4:49470871-49470890 | Msa0332410:CDS | 60.0% | |
| CCAAATCCTCCGGCTTCGGT+AGG | + | chr2_4:49470880-49470899 | None:intergenic | 60.0% | |
| CCTACCGAAGCCGGAGGATT+TGG | - | chr2_4:49470877-49470896 | Msa0332410:CDS | 60.0% | |
| ATCGAGCTATCGAGCGCCCC+CGG | + | chr2_4:49470145-49470164 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 49469318 | 49472205 | 49469318 | ID=Msa0332410;Name=Msa0332410 |
| chr2_4 | mRNA | 49469318 | 49472205 | 49469318 | ID=Msa0332410-mRNA-1;Parent=Msa0332410;Name=Msa0332410-mRNA-1;_AED=0.07;_eAED=0.07;_QI=68|0.66|0.25|0.75|1|1|4|0|304 |
| chr2_4 | exon | 49469318 | 49469379 | 49469318 | ID=Msa0332410-mRNA-1:exon:14801;Parent=Msa0332410-mRNA-1 |
| chr2_4 | exon | 49469547 | 49469784 | 49469547 | ID=Msa0332410-mRNA-1:exon:14800;Parent=Msa0332410-mRNA-1 |
| chr2_4 | exon | 49470485 | 49470916 | 49470485 | ID=Msa0332410-mRNA-1:exon:14799;Parent=Msa0332410-mRNA-1 |
| chr2_4 | exon | 49471955 | 49472205 | 49471955 | ID=Msa0332410-mRNA-1:exon:14798;Parent=Msa0332410-mRNA-1 |
| chr2_4 | five_prime_UTR | 49472138 | 49472205 | 49472138 | ID=Msa0332410-mRNA-1:five_prime_utr;Parent=Msa0332410-mRNA-1 |
| chr2_4 | CDS | 49471955 | 49472137 | 49471955 | ID=Msa0332410-mRNA-1:cds;Parent=Msa0332410-mRNA-1 |
| chr2_4 | CDS | 49470485 | 49470916 | 49470485 | ID=Msa0332410-mRNA-1:cds;Parent=Msa0332410-mRNA-1 |
| chr2_4 | CDS | 49469547 | 49469784 | 49469547 | ID=Msa0332410-mRNA-1:cds;Parent=Msa0332410-mRNA-1 |
| chr2_4 | CDS | 49469318 | 49469379 | 49469318 | ID=Msa0332410-mRNA-1:cds;Parent=Msa0332410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
