Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0213980 | XP_013464521.1 | 94.098 | 305 | 3 | 2 | 1 | 301 | 1 | 294 | 0.0 | 590 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0213980 | sp|Q9SYM2|BBX22_ARATH | 53.214 | 280 | 117 | 3 | 1 | 269 | 1 | 277 | 1.30e-92 | 279 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0213980 | A0A072VAB5 | 94.098 | 305 | 3 | 2 | 1 | 301 | 1 | 294 | 0.0 | 590 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0213980 | TF | DBB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001810 | Msa0213980 | 0.842670 | 2.243703e-58 | -8.615850e-47 |
| Msa0213980 | Msa0254340 | 0.938255 | 9.107393e-99 | -8.615850e-47 |
| Msa0213980 | Msa0293540 | 0.805998 | 1.018465e-49 | -8.615850e-47 |
| Msa0213980 | Msa0332410 | 0.905646 | 3.443799e-80 | -8.615850e-47 |
| Msa0213980 | Msa0376700 | 0.817014 | 4.107223e-52 | -8.615850e-47 |
| Msa0213980 | Msa0425830 | 0.806875 | 6.651781e-50 | -8.615850e-47 |
| Msa0213980 | Msa0574910 | 0.825649 | 4.177386e-54 | -8.615850e-47 |
| Msa0213980 | Msa0930760 | 0.837708 | 4.430947e-57 | -8.615850e-47 |
| Msa0213980 | Msa1039820 | 0.857052 | 2.122117e-62 | -8.615850e-47 |
| Msa0213980 | Msa1128260 | 0.811686 | 6.183870e-51 | -8.615850e-47 |
| Msa0213980 | Msa1411850 | 0.814040 | 1.886060e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0213980 | MtrunA17_Chr2g0314671 | 94.098 | 305 | 3 | 2 | 1 | 301 | 1 | 294 | 0.0 | 590 |
| Msa0213980 | MtrunA17_Chr4g0033641 | 43.316 | 187 | 76 | 3 | 1 | 187 | 1 | 157 | 7.92e-44 | 149 |
| Msa0213980 | MtrunA17_Chr2g0329511 | 40.957 | 188 | 80 | 3 | 1 | 188 | 1 | 157 | 8.75e-43 | 147 |
| Msa0213980 | MtrunA17_Chr3g0145061 | 43.169 | 183 | 90 | 2 | 1 | 182 | 1 | 170 | 1.42e-41 | 143 |
| Msa0213980 | MtrunA17_Chr4g0035651 | 54.717 | 106 | 47 | 1 | 1 | 105 | 1 | 106 | 8.35e-36 | 128 |
| Msa0213980 | MtrunA17_Chr3g0142221 | 54.717 | 106 | 46 | 1 | 1 | 104 | 1 | 106 | 1.00e-35 | 128 |
| Msa0213980 | MtrunA17_Chr1g0155811 | 54.286 | 105 | 47 | 1 | 1 | 104 | 1 | 105 | 1.66e-35 | 129 |
| Msa0213980 | MtrunA17_Chr5g0405151 | 50.000 | 104 | 49 | 2 | 1 | 104 | 1 | 101 | 9.40e-27 | 103 |
| Msa0213980 | MtrunA17_Chr1g0150471 | 41.667 | 96 | 47 | 1 | 5 | 100 | 6 | 92 | 1.07e-18 | 84.7 |
| Msa0213980 | MtrunA17_Chr3g0136701 | 44.792 | 96 | 44 | 1 | 5 | 100 | 6 | 92 | 1.86e-18 | 83.6 |
| Msa0213980 | MtrunA17_Chr7g0220721 | 43.478 | 92 | 43 | 1 | 5 | 96 | 26 | 108 | 1.55e-17 | 82.0 |
| Msa0213980 | MtrunA17_Chr4g0072871 | 38.043 | 92 | 48 | 1 | 5 | 96 | 22 | 104 | 1.76e-14 | 73.2 |
| Msa0213980 | MtrunA17_Chr5g0429341 | 33.333 | 96 | 55 | 1 | 1 | 96 | 1 | 87 | 2.82e-11 | 63.5 |
| Msa0213980 | MtrunA17_Chr2g0322941 | 37.000 | 100 | 52 | 2 | 1 | 100 | 40 | 128 | 9.13e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0213980 | AT1G78600.1 | 53.214 | 280 | 117 | 3 | 1 | 269 | 1 | 277 | 1.32e-93 | 279 |
| Msa0213980 | AT1G78600.2 | 50.000 | 302 | 113 | 7 | 1 | 269 | 1 | 297 | 2.33e-91 | 274 |
| Msa0213980 | AT1G06040.2 | 64.220 | 109 | 39 | 0 | 1 | 109 | 1 | 109 | 3.00e-46 | 154 |
| Msa0213980 | AT1G06040.1 | 64.220 | 109 | 39 | 0 | 1 | 109 | 1 | 109 | 8.45e-46 | 155 |
| Msa0213980 | AT2G31380.1 | 61.468 | 109 | 42 | 0 | 1 | 109 | 1 | 109 | 2.97e-42 | 145 |
| Msa0213980 | AT4G10240.1 | 51.829 | 164 | 59 | 5 | 1 | 157 | 1 | 151 | 4.58e-40 | 137 |
| Msa0213980 | AT4G39070.1 | 48.649 | 148 | 74 | 2 | 1 | 147 | 1 | 147 | 1.49e-36 | 131 |
| Msa0213980 | AT1G75540.1 | 39.726 | 219 | 115 | 5 | 1 | 207 | 1 | 214 | 1.57e-35 | 130 |
| Msa0213980 | AT2G21320.1 | 50.000 | 104 | 49 | 2 | 1 | 104 | 1 | 101 | 1.80e-26 | 102 |
| Msa0213980 | AT4G38960.1 | 49.038 | 104 | 50 | 2 | 1 | 104 | 1 | 101 | 6.38e-26 | 101 |
| Msa0213980 | AT4G38960.6 | 49.038 | 104 | 50 | 2 | 1 | 104 | 1 | 101 | 6.38e-26 | 101 |
| Msa0213980 | AT5G15850.1 | 42.857 | 98 | 47 | 1 | 5 | 102 | 12 | 100 | 4.18e-18 | 84.0 |
| Msa0213980 | AT5G24930.1 | 42.708 | 96 | 46 | 1 | 5 | 100 | 6 | 92 | 1.20e-17 | 82.8 |
| Msa0213980 | AT2G24790.1 | 41.667 | 96 | 47 | 1 | 5 | 100 | 8 | 94 | 1.26e-17 | 81.6 |
| Msa0213980 | AT4G38960.3 | 34.694 | 147 | 50 | 3 | 1 | 104 | 1 | 144 | 1.82e-17 | 80.1 |
| Msa0213980 | AT3G02380.1 | 43.011 | 93 | 44 | 1 | 5 | 97 | 16 | 99 | 2.13e-17 | 81.6 |
| Msa0213980 | AT2G24790.2 | 41.667 | 96 | 47 | 1 | 5 | 100 | 8 | 94 | 3.80e-17 | 79.0 |
| Msa0213980 | AT5G15840.1 | 39.785 | 93 | 47 | 1 | 5 | 97 | 20 | 103 | 6.62e-16 | 77.8 |
| Msa0213980 | AT5G15840.2 | 39.785 | 93 | 47 | 1 | 5 | 97 | 20 | 103 | 1.19e-15 | 75.9 |
| Msa0213980 | AT2G47890.3 | 38.710 | 93 | 48 | 1 | 5 | 97 | 13 | 96 | 1.40e-12 | 67.4 |
| Msa0213980 | AT2G47890.1 | 38.710 | 93 | 48 | 1 | 5 | 97 | 13 | 96 | 1.60e-12 | 67.4 |
| Msa0213980 | AT2G47890.2 | 38.710 | 93 | 48 | 1 | 5 | 97 | 13 | 96 | 4.10e-12 | 65.1 |
| Msa0213980 | AT5G57660.1 | 34.783 | 92 | 47 | 2 | 5 | 96 | 22 | 100 | 3.76e-11 | 63.5 |
Find 62 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTTGAAAATTTGAAATT+TGG | 0.187546 | 2_1:+57757872 | Msa0213980:five_prime_UTR |
| CCTACCGAAGCCGGAGGATT+TGG | 0.254138 | 2_1:+57759400 | Msa0213980:CDS |
| TCTTCATTGGATCTTAAAAT+AGG | 0.258790 | 2_1:-57760295 | None:intergenic |
| CCACCAGCCAAGGTGTCTTA+TGG | 0.275750 | 2_1:+57759430 | Msa0213980:CDS |
| GTATTCCATTTCCTCTTCAT+TGG | 0.304492 | 2_1:-57760308 | None:intergenic |
| AATTCGTTGAAGACAGATTC+TGG | 0.304552 | 2_1:+57759292 | Msa0213980:CDS |
| CGATAATGCTCTATTTGTTC+CGG | 0.320546 | 2_1:+57760438 | Msa0213980:CDS |
| CTACAGCTTCGGGGCTAAAC+TGG | 0.326015 | 2_1:+57760392 | Msa0213980:CDS |
| TACCATGATCAGTAGCTTCT+AGG | 0.347736 | 2_1:-57759261 | None:intergenic |
| CCATCACCACCTACAGCTTC+GGG | 0.354633 | 2_1:+57760382 | Msa0213980:CDS |
| CCCATCACCACCTACAGCTT+CGG | 0.391074 | 2_1:+57760381 | Msa0213980:CDS |
| AAGATCCAATGAAGAGGAAA+TGG | 0.393956 | 2_1:+57760303 | Msa0213980:CDS |
| GGAACTGTCCAAGACGAATC+TGG | 0.395347 | 2_1:-57760352 | None:intergenic |
| ATCTGTCTTCAACGAATTTG+AGG | 0.404754 | 2_1:-57759287 | None:intergenic |
| TGATGAAGCTGCTTTGTGTT+GGG | 0.412693 | 2_1:+57757971 | Msa0213980:CDS |
| ACCTGACAAATATCACATTT+AGG | 0.415653 | 2_1:-57758077 | None:intergenic |
| ATCTCCAAATCCTCCGGCTT+CGG | 0.419987 | 2_1:-57759404 | None:intergenic |
| GCTCTATTTGTTCCGGACAT+AGG | 0.432303 | 2_1:+57760445 | Msa0213980:CDS |
| TAAATCTTTCAGGAAGCATT+CGG | 0.445968 | 2_1:+57759118 | Msa0213980:intron |
| GCCTAAATGTGATATTTGTC+AGG | 0.459129 | 2_1:+57758076 | Msa0213980:CDS |
| CTGATGAAGCTGCTTTGTGT+TGG | 0.463397 | 2_1:+57757970 | Msa0213980:CDS |
| CCCGAAGCTGTAGGTGGTGA+TGG | 0.475557 | 2_1:-57760382 | None:intergenic |
| CACTGCAAATGCATTTGTCT+CGG | 0.482317 | 2_1:+57759201 | Msa0213980:CDS |
| TATGGTGGTGGTTCTAACTC+TGG | 0.487845 | 2_1:+57759448 | Msa0213980:CDS |
| TGGATGGATCATCAAATTCA+AGG | 0.498918 | 2_1:+57759539 | Msa0213980:CDS |
| CAGTCAGAATTATAACTACA+TGG | 0.503150 | 2_1:+57759519 | Msa0213980:CDS |
| GCCAAGGTGTCTTATGGTGG+TGG | 0.508324 | 2_1:+57759436 | Msa0213980:CDS |
| CCACCATAAGACACCTTGGC+TGG | 0.515474 | 2_1:-57759433 | None:intergenic |
| TGGAAAATCTCCAAATCCTC+CGG | 0.517904 | 2_1:-57759410 | None:intergenic |
| CAGAATTATAACTACATGGA+TGG | 0.518101 | 2_1:+57759523 | Msa0213980:CDS |
| GGGAAAATTGAAACTTGAAG+TGG | 0.523387 | 2_1:+57757846 | None:intergenic |
| ACCGTGTTCCAGATTCGTCT+TGG | 0.527866 | 2_1:+57760344 | Msa0213980:CDS |
| GGAAAATTGAAACTTGAAGT+GGG | 0.530897 | 2_1:+57757847 | Msa0213980:five_prime_UTR |
| CGAAAATTACTACTATTCTG+AGG | 0.531227 | 2_1:-57760487 | None:intergenic |
| ACTGCAAATGCATTTGTCTC+GGG | 0.534296 | 2_1:+57759202 | Msa0213980:CDS |
| TCATTGTACTCAGATGATTG+AGG | 0.549321 | 2_1:-57759370 | None:intergenic |
| TGAGAAGAAGAAGCAGAAAG+AGG | 0.549965 | 2_1:-57758050 | None:intergenic |
| CTTCTCACCGGTGTAAAAGT+CGG | 0.551046 | 2_1:+57759238 | Msa0213980:CDS |
| GGCCTAGAAGCTACTGATCA+TGG | 0.554246 | 2_1:+57759259 | Msa0213980:CDS |
| CCGAAGCTGTAGGTGGTGAT+GGG | 0.554827 | 2_1:-57760381 | None:intergenic |
| AATGGAATACGACGACTACA+TGG | 0.559471 | 2_1:+57760321 | Msa0213980:CDS |
| GAAAATTACTACTATTCTGA+GGG | 0.560424 | 2_1:-57760486 | None:intergenic |
| ATGCTTGTAAAGCCTATGTC+CGG | 0.560747 | 2_1:-57760457 | None:intergenic |
| CAGTTTAGCCCCGAAGCTGT+AGG | 0.563024 | 2_1:-57760391 | None:intergenic |
| CATCAAAGGTTTCTTCTCAC+CGG | 0.568029 | 2_1:+57759226 | Msa0213980:CDS |
| CATTATCGAATGAATACCGC+GGG | 0.571496 | 2_1:-57760423 | None:intergenic |
| CCAGCCAAGGTGTCTTATGG+TGG | 0.576805 | 2_1:+57759433 | Msa0213980:CDS |
| CATTTGTCTCGGGACATCAA+AGG | 0.579671 | 2_1:+57759212 | Msa0213980:CDS |
| CCAAATCCTCCGGCTTCGGT+AGG | 0.580489 | 2_1:-57759400 | None:intergenic |
| ACCACCACCATAAGACACCT+TGG | 0.592536 | 2_1:-57759437 | None:intergenic |
| TTGTGAAGGTGCTGAAGCTA+AGG | 0.593143 | 2_1:+57757935 | Msa0213980:CDS |
| CCATAAGACACCTTGGCTGG+TGG | 0.594137 | 2_1:-57759430 | None:intergenic |
| GGATGGATCATCAAATTCAA+GGG | 0.601507 | 2_1:+57759540 | Msa0213980:CDS |
| ATTCAGTGTAATGTTTGTGA+AGG | 0.627076 | 2_1:+57757921 | Msa0213980:CDS |
| CCAGATTAATGATGATTCCG+CGG | 0.651874 | 2_1:-57760584 | None:intergenic |
| TTTAGCCCCGAAGCTGTAGG+TGG | 0.663191 | 2_1:-57760388 | None:intergenic |
| TCCAAGACGAATCTGGAACA+CGG | 0.671574 | 2_1:-57760345 | None:intergenic |
| GTAGGTGGTGATGGGATCTG+AGG | 0.674067 | 2_1:-57760373 | None:intergenic |
| CATCACCACCTACAGCTTCG+GGG | 0.682711 | 2_1:+57760383 | Msa0213980:CDS |
| GAGTTTATGCAGGCTGACAG+TGG | 0.687400 | 2_1:+57760250 | Msa0213980:intron |
| GCATTATCGAATGAATACCG+CGG | 0.724975 | 2_1:-57760424 | None:intergenic |
| ACTCTGGAAACATGTCACAG+TGG | 0.763112 | 2_1:+57759464 | Msa0213980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTAAAATTAATT+TGG | + | chr2_1:57758178-57758197 | Msa0213980:intron | 0.0% |
| !!! | TTTTTATTGATTTATTTGAA+TGG | + | chr2_1:57758154-57758173 | Msa0213980:intron | 10.0% |
| !! | AGTTCAAAAATATAAATAAA+AGG | - | chr2_1:57758360-57758379 | None:intergenic | 10.0% |
| !!! | TTTAATTGTAATATTTTGAT+GGG | + | chr2_1:57758379-57758398 | Msa0213980:intron | 10.0% |
| !!! | TTTAATTTTGTATAAGGTTT+TGG | + | chr2_1:57758120-57758139 | Msa0213980:intron | 15.0% |
| !!! | TTTTTAAAATTAATTTGGAG+TGG | + | chr2_1:57758183-57758202 | Msa0213980:intron | 15.0% |
| !! | CATGAAAAAGTAAAAAAAAT+TGG | + | chr2_1:57758213-57758232 | Msa0213980:intron | 15.0% |
| !!! | CTTTAATTGTAATATTTTGA+TGG | + | chr2_1:57758378-57758397 | Msa0213980:intron | 15.0% |
| !!! | TGAAATCTATAATTTTGTAT+AGG | + | chr2_1:57758497-57758516 | Msa0213980:intron | 15.0% |
| !!! | GAAATCTATAATTTTGTATA+GGG | + | chr2_1:57758498-57758517 | Msa0213980:intron | 15.0% |
| !! | TCATAAAAACTTATCATTTA+AGG | + | chr2_1:57758627-57758646 | Msa0213980:intron | 15.0% |
| !! | CAAATAGAAAAAAAAATTGA+GGG | - | chr2_1:57759590-57759609 | None:intergenic | 15.0% |
| !!! | TTGCTTGAAAATTTGAAATT+TGG | + | chr2_1:57757872-57757891 | Msa0213980:five_prime_UTR | 20.0% |
| !! | TTAGAAACAGGTAAAATATT+TGG | + | chr2_1:57758453-57758472 | Msa0213980:intron | 20.0% |
| !!! | TTGTGTTATTTAAATCTTTC+AGG | + | chr2_1:57759108-57759127 | Msa0213980:intron | 20.0% |
| !! | CCAAATAGAAAAAAAAATTG+AGG | - | chr2_1:57759591-57759610 | None:intergenic | 20.0% |
| !!! | CCTCAATTTTTTTTTCTATT+TGG | + | chr2_1:57759588-57759607 | Msa0213980:intron | 20.0% |
| !!! | TTTTTTTTCTATTTGGATCA+TGG | + | chr2_1:57759595-57759614 | Msa0213980:intron | 20.0% |
| !!! | TTTTAAGTGCTTTTTAACTA+TGG | + | chr2_1:57759808-57759827 | Msa0213980:intron | 20.0% |
| !!! | AATAAGTTTAAAACAGCTTA+TGG | + | chr2_1:57760081-57760100 | Msa0213980:intron | 20.0% |
| !! | AAAAATTACTACTATTCTGA+GGG | - | chr2_1:57760559-57760578 | None:intergenic | 20.0% |
| !!! | TATAAGGTTTTGGATTAAAG+AGG | + | chr2_1:57758130-57758149 | Msa0213980:intron | 25.0% |
| ! | TTGAAACCTTTATATGATTC+TGG | + | chr2_1:57758406-57758425 | Msa0213980:intron | 25.0% |
| ! | TTAGTTCCAGAATCATATAA+AGG | - | chr2_1:57758415-57758434 | None:intergenic | 25.0% |
| !! | TTTTGGTCTCTAATATTTGT+TGG | + | chr2_1:57758697-57758716 | Msa0213980:intron | 25.0% |
| ! | CTGGTAATAATTTGAGAAAA+TGG | + | chr2_1:57758858-57758877 | Msa0213980:intron | 25.0% |
| ! | GGACAAATAACAAATTAACA+AGG | - | chr2_1:57759064-57759083 | None:intergenic | 25.0% |
| !!! | TGTTAATTTGTTATTTGTCC+TGG | + | chr2_1:57759064-57759083 | Msa0213980:intron | 25.0% |
| !! | TGGACAATTGATGAATTTTT+CGG | + | chr2_1:57759484-57759503 | Msa0213980:CDS | 25.0% |
| ! | AATGCAGAAATATTAAGAAC+TGG | + | chr2_1:57759730-57759749 | Msa0213980:intron | 25.0% |
| ! | ATGAATGTTGAAAGTAGTAA+AGG | + | chr2_1:57759894-57759913 | Msa0213980:intron | 25.0% |
| ! | TTAAAACGTTTATCCAAACA+AGG | - | chr2_1:57759950-57759969 | None:intergenic | 25.0% |
| ! | TTATATTCAAGTGCTTATGT+CGG | + | chr2_1:57760141-57760160 | Msa0213980:intron | 25.0% |
| ! | TCTTCATTGGATCTTAAAAT+AGG | - | chr2_1:57760298-57760317 | None:intergenic | 25.0% |
| !!! | TATTTTAAGATCCAATGAAG+AGG | + | chr2_1:57760297-57760316 | Msa0213980:CDS | 25.0% |
| ! | GAAAATTACTACTATTCTGA+GGG | - | chr2_1:57760489-57760508 | None:intergenic | 25.0% |
| ! | GAAAAATTACTACTATTCTG+AGG | - | chr2_1:57760560-57760579 | None:intergenic | 25.0% |
| GGAAAATTGAAACTTGAAGT+GGG | + | chr2_1:57757847-57757866 | Msa0213980:five_prime_UTR | 30.0% | |
| ATTCAGTGTAATGTTTGTGA+AGG | + | chr2_1:57757921-57757940 | Msa0213980:CDS | 30.0% | |
| ACCTGACAAATATCACATTT+AGG | - | chr2_1:57758080-57758099 | None:intergenic | 30.0% | |
| GTTCTTGATAGATTAGAAAC+AGG | + | chr2_1:57758441-57758460 | Msa0213980:intron | 30.0% | |
| TAAGGTCCTTAAATATTGTC+CGG | + | chr2_1:57758645-57758664 | Msa0213980:intron | 30.0% | |
| TTCTATGACAAGTTAGAAAG+TGG | + | chr2_1:57758748-57758767 | Msa0213980:intron | 30.0% | |
| AAATCCTTTCCCTTGAATAT+AGG | + | chr2_1:57758783-57758802 | Msa0213980:intron | 30.0% | |
| CAAGATACTCCTATATTCAA+GGG | - | chr2_1:57758795-57758814 | None:intergenic | 30.0% | |
| ACAACTACATGTGTTAATGT+CGG | + | chr2_1:57758893-57758912 | Msa0213980:intron | 30.0% | |
| ! | GGTACTATATAGGTTTCTTT+TGG | + | chr2_1:57758952-57758971 | Msa0213980:intron | 30.0% |
| CTCAACAAAAATGTTGACAA+TGG | - | chr2_1:57759035-57759054 | None:intergenic | 30.0% | |
| ! | CATTGTCAACATTTTTGTTG+AGG | + | chr2_1:57759033-57759052 | Msa0213980:intron | 30.0% |
| !! | TAAATCTTTCAGGAAGCATT+CGG | + | chr2_1:57759118-57759137 | Msa0213980:intron | 30.0% |
| ! | GACAGAAGAAGATTTTGTAT+CGG | - | chr2_1:57759329-57759348 | None:intergenic | 30.0% |
| CAGTCAGAATTATAACTACA+TGG | + | chr2_1:57759519-57759538 | Msa0213980:CDS | 30.0% | |
| CAGAATTATAACTACATGGA+TGG | + | chr2_1:57759523-57759542 | Msa0213980:CDS | 30.0% | |
| ! | TTTTCTATCTTCTCTGTTCA+TGG | + | chr2_1:57759641-57759660 | Msa0213980:intron | 30.0% |
| TGTGAACATTGTCATATGAT+TGG | + | chr2_1:57759670-57759689 | Msa0213980:intron | 30.0% | |
| !! | AAGCTAATAGTTGTTTTCAC+AGG | + | chr2_1:57760037-57760056 | Msa0213980:intron | 30.0% |
| TCAAATAAGCCAATTCAAAC+AGG | + | chr2_1:57760173-57760192 | Msa0213980:intron | 30.0% | |
| TTTATGGTTGAATGCTTATG+CGG | + | chr2_1:57760217-57760236 | Msa0213980:intron | 30.0% | |
| CGAAAATTACTACTATTCTG+AGG | - | chr2_1:57760490-57760509 | None:intergenic | 30.0% | |
| GCCTAAATGTGATATTTGTC+AGG | + | chr2_1:57758076-57758095 | Msa0213980:CDS | 35.0% | |
| ! | AGTGTTTGAGGCACTATTTA+AGG | + | chr2_1:57758532-57758551 | Msa0213980:intron | 35.0% |
| AAGGTCCTTAAATATTGTCC+GGG | + | chr2_1:57758646-57758665 | Msa0213980:intron | 35.0% | |
| ! | TGGTCTCTAATATTTGTTGG+TGG | + | chr2_1:57758700-57758719 | Msa0213980:intron | 35.0% |
| ! | TCTAACTTGTCATAGAAGCA+AGG | - | chr2_1:57758745-57758764 | None:intergenic | 35.0% |
| TACTCCTATATTCAAGGGAA+AGG | - | chr2_1:57758790-57758809 | None:intergenic | 35.0% | |
| CCAAGATACTCCTATATTCA+AGG | - | chr2_1:57758796-57758815 | None:intergenic | 35.0% | |
| !! | CCTTGAATATAGGAGTATCT+TGG | + | chr2_1:57758793-57758812 | Msa0213980:intron | 35.0% |
| !! | TGAATATAGGAGTATCTTGG+TGG | + | chr2_1:57758796-57758815 | Msa0213980:intron | 35.0% |
| !! | CTGAAGTGTTGGTACTATAT+AGG | + | chr2_1:57758942-57758961 | Msa0213980:intron | 35.0% |
| AAGTTCTTTCAAACTGAACC+AGG | - | chr2_1:57759085-57759104 | None:intergenic | 35.0% | |
| ATCTGTCTTCAACGAATTTG+AGG | - | chr2_1:57759290-57759309 | None:intergenic | 35.0% | |
| AATTCGTTGAAGACAGATTC+TGG | + | chr2_1:57759292-57759311 | Msa0213980:CDS | 35.0% | |
| TCATTGTACTCAGATGATTG+AGG | - | chr2_1:57759373-57759392 | None:intergenic | 35.0% | |
| TGGATGGATCATCAAATTCA+AGG | + | chr2_1:57759539-57759558 | Msa0213980:CDS | 35.0% | |
| GGATGGATCATCAAATTCAA+GGG | + | chr2_1:57759540-57759559 | Msa0213980:CDS | 35.0% | |
| ATTGGATCACTGACAAAGAT+TGG | + | chr2_1:57759688-57759707 | Msa0213980:intron | 35.0% | |
| AGTAGCAGTATATCCTTGTT+TGG | + | chr2_1:57759934-57759953 | Msa0213980:intron | 35.0% | |
| AAGATCCAATGAAGAGGAAA+TGG | + | chr2_1:57760303-57760322 | Msa0213980:CDS | 35.0% | |
| GTATTCCATTTCCTCTTCAT+TGG | - | chr2_1:57760311-57760330 | None:intergenic | 35.0% | |
| CGATAATGCTCTATTTGTTC+CGG | + | chr2_1:57760438-57760457 | Msa0213980:CDS | 35.0% | |
| CGATAATGCTCTATTTGTTC+TGG | + | chr2_1:57760438-57760457 | Msa0213980:CDS | 35.0% | |
| !!! | GTAGTAATTTTTCAAGACCG+CGG | + | chr2_1:57760567-57760586 | Msa0213980:CDS | 35.0% |
| ! | TGATGAAGCTGCTTTGTGTT+GGG | + | chr2_1:57757971-57757990 | Msa0213980:CDS | 40.0% |
| TGAGAAGAAGAAGCAGAAAG+AGG | - | chr2_1:57758053-57758072 | None:intergenic | 40.0% | |
| AGGTCCTTAAATATTGTCCG+GGG | + | chr2_1:57758647-57758666 | Msa0213980:intron | 40.0% | |
| ACAGAAATCAGACCCAACAT+TGG | + | chr2_1:57758825-57758844 | Msa0213980:intron | 40.0% | |
| AGTGTCAACGTTCCAATGTT+GGG | - | chr2_1:57758840-57758859 | None:intergenic | 40.0% | |
| ! | ACGTCTTCAATCTGAAGTGT+TGG | + | chr2_1:57758931-57758950 | Msa0213980:intron | 40.0% |
| !!! | CGGCTATTTCTTTTGTCTAG+AGG | + | chr2_1:57759138-57759157 | Msa0213980:CDS | 40.0% |
| CACTGCAAATGCATTTGTCT+CGG | + | chr2_1:57759201-57759220 | Msa0213980:CDS | 40.0% | |
| ACTGCAAATGCATTTGTCTC+GGG | + | chr2_1:57759202-57759221 | Msa0213980:CDS | 40.0% | |
| CATCAAAGGTTTCTTCTCAC+CGG | + | chr2_1:57759226-57759245 | Msa0213980:CDS | 40.0% | |
| TACCATGATCAGTAGCTTCT+AGG | - | chr2_1:57759264-57759283 | None:intergenic | 40.0% | |
| ATCTTCTTCTGTCTCGAGAA+AGG | + | chr2_1:57759336-57759355 | Msa0213980:intron | 40.0% | |
| TGGAAAATCTCCAAATCCTC+CGG | - | chr2_1:57759413-57759432 | None:intergenic | 40.0% | |
| AATCGCTTAACACTGCAGTA+AGG | - | chr2_1:57760199-57760218 | None:intergenic | 40.0% | |
| CTGCAGTGTTAAGCGATTTA+TGG | + | chr2_1:57760201-57760220 | Msa0213980:intron | 40.0% | |
| TCCTTCTGATGAGTTTATGC+AGG | + | chr2_1:57760240-57760259 | Msa0213980:intron | 40.0% | |
| AATGGAATACGACGACTACA+TGG | + | chr2_1:57760321-57760340 | Msa0213980:CDS | 40.0% | |
| ! | AATGAATACCGCGGGTTTTT+CGG | - | chr2_1:57760418-57760437 | None:intergenic | 40.0% |
| CATTATCGAATGAATACCGC+GGG | - | chr2_1:57760426-57760445 | None:intergenic | 40.0% | |
| GCATTATCGAATGAATACCG+CGG | - | chr2_1:57760427-57760446 | None:intergenic | 40.0% | |
| ATGCTTGTAAAGCCTATGTC+CGG | - | chr2_1:57760460-57760479 | None:intergenic | 40.0% | |
| ! | GCTCTATTTGTTCTGGACAT+AGG | + | chr2_1:57760515-57760534 | Msa0213980:intron | 40.0% |
| !! | TTGTGAAGGTGCTGAAGCTA+AGG | + | chr2_1:57757935-57757954 | Msa0213980:CDS | 45.0% |
| ! | CTGATGAAGCTGCTTTGTGT+TGG | + | chr2_1:57757970-57757989 | Msa0213980:CDS | 45.0% |
| GTCTTGCTAACGAGTGTTTG+AGG | + | chr2_1:57758520-57758539 | Msa0213980:intron | 45.0% | |
| GGTCCTTAAATATTGTCCGG+GGG | + | chr2_1:57758648-57758667 | Msa0213980:intron | 45.0% | |
| ! | GCTCGATAGCATTTCGCTTT+TGG | + | chr2_1:57758680-57758699 | Msa0213980:intron | 45.0% |
| CAGTGTCAACGTTCCAATGT+TGG | - | chr2_1:57758841-57758860 | None:intergenic | 45.0% | |
| CAACATTGGAACGTTGACAC+TGG | + | chr2_1:57758839-57758858 | Msa0213980:intron | 45.0% | |
| CATTTGTCTCGGGACATCAA+AGG | + | chr2_1:57759212-57759231 | Msa0213980:CDS | 45.0% | |
| CTTCTCACCGGTGTAAAAGT+CGG | + | chr2_1:57759238-57759257 | Msa0213980:CDS | 45.0% | |
| !! | TTCTAGGCCGACTTTTACAC+CGG | - | chr2_1:57759248-57759267 | None:intergenic | 45.0% |
| ! | GAAATTTTGCCTACCGAAGC+CGG | + | chr2_1:57759391-57759410 | Msa0213980:CDS | 45.0% |
| !! | TATGGTGGTGGTTCTAACTC+TGG | + | chr2_1:57759448-57759467 | Msa0213980:CDS | 45.0% |
| ! | ACTCTGGAAACATGTCACAG+TGG | + | chr2_1:57759464-57759483 | Msa0213980:CDS | 45.0% |
| GCAGTAAGGCCTGTTTGAAT+TGG | - | chr2_1:57760185-57760204 | None:intergenic | 45.0% | |
| GCCTGCATAAACTCATCAGA+AGG | - | chr2_1:57760244-57760263 | None:intergenic | 45.0% | |
| ! | TCCAAGACGAATCTGGAACA+CGG | - | chr2_1:57760348-57760367 | None:intergenic | 45.0% |
| GCTCTATTTGTTCCGGACAT+AGG | + | chr2_1:57760445-57760464 | Msa0213980:CDS | 45.0% | |
| !!! | TTTTTTTTTAATTTTGTATA+AGG | + | chr2_1:57758114-57758133 | Msa0213980:intron | 5.0% |
| GGCCTAGAAGCTACTGATCA+TGG | + | chr2_1:57759259-57759278 | Msa0213980:CDS | 50.0% | |
| ATCTCCAAATCCTCCGGCTT+CGG | - | chr2_1:57759407-57759426 | None:intergenic | 50.0% | |
| ! | TGGAGATTTTCCACCAGCCA+AGG | + | chr2_1:57759420-57759439 | Msa0213980:CDS | 50.0% |
| ACCACCACCATAAGACACCT+TGG | - | chr2_1:57759440-57759459 | None:intergenic | 50.0% | |
| GAGTTTATGCAGGCTGACAG+TGG | + | chr2_1:57760250-57760269 | Msa0213980:intron | 50.0% | |
| ACCGTGTTCCAGATTCGTCT+TGG | + | chr2_1:57760344-57760363 | Msa0213980:CDS | 50.0% | |
| GGAACTGTCCAAGACGAATC+TGG | - | chr2_1:57760355-57760374 | None:intergenic | 50.0% | |
| TAAACTGGCCGAAAAACCCG+CGG | + | chr2_1:57760407-57760426 | Msa0213980:CDS | 50.0% | |
| GCGCCCCCGGACAATATTTA+AGG | - | chr2_1:57758654-57758673 | None:intergenic | 55.0% | |
| ! | ATTTTGCCTACCGAAGCCGG+AGG | + | chr2_1:57759394-57759413 | Msa0213980:CDS | 55.0% |
| CCATAAGACACCTTGGCTGG+TGG | - | chr2_1:57759433-57759452 | None:intergenic | 55.0% | |
| ! | CCACCAGCCAAGGTGTCTTA+TGG | + | chr2_1:57759430-57759449 | Msa0213980:CDS | 55.0% |
| CCACCATAAGACACCTTGGC+TGG | - | chr2_1:57759436-57759455 | None:intergenic | 55.0% | |
| ! | CCAGCCAAGGTGTCTTATGG+TGG | + | chr2_1:57759433-57759452 | Msa0213980:CDS | 55.0% |
| ! | GCCAAGGTGTCTTATGGTGG+TGG | + | chr2_1:57759436-57759455 | Msa0213980:CDS | 55.0% |
| !! | GTAGGTGGTGATGGGATCTG+AGG | - | chr2_1:57760376-57760395 | None:intergenic | 55.0% |
| CCGAAGCTGTAGGTGGTGAT+GGG | - | chr2_1:57760384-57760403 | None:intergenic | 55.0% | |
| CCCATCACCACCTACAGCTT+CGG | + | chr2_1:57760381-57760400 | Msa0213980:CDS | 55.0% | |
| CCATCACCACCTACAGCTTC+GGG | + | chr2_1:57760382-57760401 | Msa0213980:CDS | 55.0% | |
| CATCACCACCTACAGCTTCG+GGG | + | chr2_1:57760383-57760402 | Msa0213980:CDS | 55.0% | |
| TTTAGCCCCGAAGCTGTAGG+TGG | - | chr2_1:57760391-57760410 | None:intergenic | 55.0% | |
| CAGTTTAGCCCCGAAGCTGT+AGG | - | chr2_1:57760394-57760413 | None:intergenic | 55.0% | |
| CTACAGCTTCGGGGCTAAAC+TGG | + | chr2_1:57760392-57760411 | Msa0213980:CDS | 55.0% | |
| CCAAATCCTCCGGCTTCGGT+AGG | - | chr2_1:57759403-57759422 | None:intergenic | 60.0% | |
| CCTACCGAAGCCGGAGGATT+TGG | + | chr2_1:57759400-57759419 | Msa0213980:CDS | 60.0% | |
| CCCGAAGCTGTAGGTGGTGA+TGG | - | chr2_1:57760385-57760404 | None:intergenic | 60.0% | |
| ATCGAGCTATCGAGCGCCCC+CGG | - | chr2_1:57758667-57758686 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 57757847 | 57760601 | 57757847 | ID=Msa0213980;Name=Msa0213980 |
| chr2_1 | mRNA | 57757847 | 57760601 | 57757847 | ID=Msa0213980-mRNA-1;Parent=Msa0213980;Name=Msa0213980-mRNA-1;_AED=0.05;_eAED=0.05;_QI=68|0.5|0.2|1|0.5|0.4|5|0|301 |
| chr2_1 | exon | 57757847 | 57758097 | 57757847 | ID=Msa0213980-mRNA-1:exon:15981;Parent=Msa0213980-mRNA-1 |
| chr2_1 | exon | 57759130 | 57759345 | 57759130 | ID=Msa0213980-mRNA-1:exon:15982;Parent=Msa0213980-mRNA-1 |
| chr2_1 | exon | 57759358 | 57759561 | 57759358 | ID=Msa0213980-mRNA-1:exon:15983;Parent=Msa0213980-mRNA-1 |
| chr2_1 | exon | 57760262 | 57760499 | 57760262 | ID=Msa0213980-mRNA-1:exon:15984;Parent=Msa0213980-mRNA-1 |
| chr2_1 | exon | 57760537 | 57760601 | 57760537 | ID=Msa0213980-mRNA-1:exon:15985;Parent=Msa0213980-mRNA-1 |
| chr2_1 | five_prime_UTR | 57757847 | 57757914 | 57757847 | ID=Msa0213980-mRNA-1:five_prime_utr;Parent=Msa0213980-mRNA-1 |
| chr2_1 | CDS | 57757915 | 57758097 | 57757915 | ID=Msa0213980-mRNA-1:cds;Parent=Msa0213980-mRNA-1 |
| chr2_1 | CDS | 57759130 | 57759345 | 57759130 | ID=Msa0213980-mRNA-1:cds;Parent=Msa0213980-mRNA-1 |
| chr2_1 | CDS | 57759358 | 57759561 | 57759358 | ID=Msa0213980-mRNA-1:cds;Parent=Msa0213980-mRNA-1 |
| chr2_1 | CDS | 57760262 | 57760499 | 57760262 | ID=Msa0213980-mRNA-1:cds;Parent=Msa0213980-mRNA-1 |
| chr2_1 | CDS | 57760537 | 57760601 | 57760537 | ID=Msa0213980-mRNA-1:cds;Parent=Msa0213980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
