Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294640 | XP_013464597.1 | 88.564 | 376 | 23 | 3 | 1 | 357 | 1 | 375 | 0.0 | 563 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294640 | sp|Q9LKA5|MORF8_ARATH | 56.198 | 363 | 114 | 5 | 1 | 318 | 1 | 363 | 1.36e-96 | 295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294640 | A0A072V9Y5 | 88.564 | 376 | 23 | 3 | 1 | 357 | 1 | 375 | 0.0 | 563 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0294640 | Msa0333220 | 0.844111 | 9.256203e-59 | -8.615850e-47 |
| Msa0294640 | Msa1150290 | 0.800584 | 1.345846e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294640 | MtrunA17_Chr2g0316311 | 88.564 | 376 | 23 | 3 | 1 | 357 | 1 | 375 | 0.0 | 563 |
| Msa0294640 | MtrunA17_Chr1g0148081 | 80.501 | 359 | 36 | 6 | 1 | 357 | 1 | 327 | 0.0 | 521 |
| Msa0294640 | MtrunA17_Chr2g0316321 | 67.760 | 183 | 34 | 3 | 1 | 183 | 1 | 158 | 6.60e-72 | 221 |
| Msa0294640 | MtrunA17_Chr4g0067641 | 52.432 | 185 | 77 | 4 | 15 | 193 | 9 | 188 | 2.64e-58 | 189 |
| Msa0294640 | MtrunA17_Chr1g0166671 | 46.471 | 170 | 82 | 4 | 68 | 235 | 54 | 216 | 9.77e-43 | 147 |
| Msa0294640 | MtrunA17_Chr1g0187251 | 44.720 | 161 | 80 | 4 | 76 | 234 | 80 | 233 | 2.38e-40 | 142 |
| Msa0294640 | MtrunA17_Chr2g0280611 | 47.059 | 136 | 64 | 3 | 85 | 214 | 77 | 210 | 4.22e-36 | 130 |
| Msa0294640 | MtrunA17_Chr2g0277431 | 31.923 | 260 | 149 | 9 | 23 | 278 | 56 | 291 | 8.07e-23 | 99.4 |
| Msa0294640 | MtrunA17_Chr6g0467031 | 34.091 | 176 | 91 | 7 | 17 | 187 | 14 | 169 | 5.29e-18 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294640 | AT3G15000.1 | 56.198 | 363 | 114 | 5 | 1 | 318 | 1 | 363 | 1.38e-97 | 295 |
| Msa0294640 | AT3G06790.2 | 52.128 | 188 | 77 | 4 | 15 | 193 | 9 | 192 | 1.43e-54 | 179 |
| Msa0294640 | AT3G06790.1 | 51.596 | 188 | 78 | 4 | 15 | 193 | 9 | 192 | 1.52e-53 | 177 |
| Msa0294640 | AT1G72530.1 | 44.898 | 147 | 76 | 2 | 69 | 213 | 29 | 172 | 2.97e-44 | 151 |
| Msa0294640 | AT1G32580.1 | 37.395 | 238 | 127 | 7 | 10 | 235 | 1 | 228 | 2.27e-42 | 147 |
| Msa0294640 | AT2G35240.1 | 48.125 | 160 | 75 | 5 | 78 | 235 | 78 | 231 | 2.77e-42 | 147 |
| Msa0294640 | AT1G72530.2 | 43.709 | 151 | 76 | 3 | 69 | 213 | 29 | 176 | 6.31e-42 | 145 |
| Msa0294640 | AT1G53260.2 | 73.913 | 92 | 24 | 0 | 136 | 227 | 3 | 94 | 4.94e-37 | 134 |
| Msa0294640 | AT1G11430.1 | 46.377 | 138 | 71 | 2 | 85 | 221 | 77 | 212 | 1.86e-36 | 132 |
| Msa0294640 | AT1G53260.1 | 73.913 | 92 | 24 | 0 | 136 | 227 | 3 | 94 | 1.94e-36 | 133 |
| Msa0294640 | AT4G20020.2 | 31.988 | 322 | 162 | 11 | 5 | 309 | 4 | 285 | 8.66e-32 | 124 |
| Msa0294640 | AT4G20020.1 | 31.988 | 322 | 162 | 11 | 5 | 309 | 4 | 285 | 2.25e-31 | 123 |
| Msa0294640 | AT5G44780.1 | 38.095 | 105 | 63 | 2 | 91 | 193 | 78 | 182 | 5.76e-19 | 89.0 |
Find 174 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTAATGAATTTGCGTTTC+AGG | 0.114389 | 2_3:+46636785 | Msa0294640:three_prime_UTR |
| GGTGGTTAGGGTTAGGGTTT+TGG | 0.131447 | 2_3:-46633796 | None:intergenic |
| GAAATGTAAATTAGGGTTTA+TGG | 0.141153 | 2_3:-46633704 | None:intergenic |
| TTGGGAATGAAATGTAAATT+AGG | 0.195322 | 2_3:-46633712 | None:intergenic |
| AAAACCTTCGCTGAGGTTAT+TGG | 0.223039 | 2_3:+46634122 | Msa0294640:CDS |
| ACTAGACACTACTTTGCTTT+TGG | 0.255524 | 2_3:+46635329 | Msa0294640:CDS |
| CTAGGTGAGCCCTTCATTAA+TGG | 0.274941 | 2_3:+46636092 | Msa0294640:intron |
| CCTCCTCCCAACAGTGGATA+TGG | 0.278148 | 2_3:+46636515 | Msa0294640:CDS |
| TCAACGATCCTAACCCTAAC+TGG | 0.286264 | 2_3:+46633979 | Msa0294640:CDS |
| GAGGAAGGTGGTTAGGGTTA+GGG | 0.291280 | 2_3:-46633802 | None:intergenic |
| AGAGGAAGGTGGTTAGGGTT+AGG | 0.294206 | 2_3:-46633803 | None:intergenic |
| GAGGCATCCCTGCCATGTTC+TGG | 0.294548 | 2_3:-46636571 | None:intergenic |
| AAATGTAAATTAGGGTTTAT+GGG | 0.296731 | 2_3:-46633703 | None:intergenic |
| GGAGGAGGTCCGCTCATGTT+GGG | 0.310269 | 2_3:-46636473 | None:intergenic |
| TGGGAATGAAATGTAAATTA+GGG | 0.315040 | 2_3:-46633711 | None:intergenic |
| AGCGAGAGAGGAAGGTGGTT+AGG | 0.323331 | 2_3:-46633809 | None:intergenic |
| AGCAAAATCGTTTCCTTTGG+TGG | 0.332597 | 2_3:-46634011 | None:intergenic |
| TTGGGAGGGTAAGCATTGTT+TGG | 0.344705 | 2_3:-46636305 | None:intergenic |
| ATGATCCAGACAAATTCTTT+TGG | 0.345391 | 2_3:+46636664 | Msa0294640:three_prime_UTR |
| TGCATATCCGCCTTGGTTGT+TGG | 0.345680 | 2_3:-46636348 | None:intergenic |
| GGTGGACGATTGGCCCAGTT+AGG | 0.355387 | 2_3:-46633993 | None:intergenic |
| GAGGAGGTCCGCTCATGTTG+GGG | 0.358951 | 2_3:-46636472 | None:intergenic |
| TTATTTGACCATCCAGCATT+TGG | 0.363386 | 2_3:-46636593 | None:intergenic |
| AGGCCTCCAGTGCAGAATTC+TGG | 0.365211 | 2_3:+46636275 | Msa0294640:CDS |
| GGGGCATATCCGCCTTGATT+TGG | 0.368377 | 2_3:-46636398 | None:intergenic |
| GGGGCGTATCCGCCTTGATT+TGG | 0.368787 | 2_3:-46636422 | None:intergenic |
| CAGTAGACTCCTGACCTGTT+TGG | 0.380112 | 2_3:+46636617 | Msa0294640:exon |
| GGGGTGTATCCGCCTTGATT+TGG | 0.382042 | 2_3:-46636374 | None:intergenic |
| GCGAGAGAGGAAGGTGGTTA+GGG | 0.384328 | 2_3:-46633808 | None:intergenic |
| GCATATCCGCCTTGGTTGTT+GGG | 0.388442 | 2_3:-46636347 | None:intergenic |
| GGGTATCCACCGCCTTGATT+TGG | 0.394832 | 2_3:-46636446 | None:intergenic |
| TGAAGAGAAGAGAGTGAGAT+TGG | 0.397833 | 2_3:-46633731 | None:intergenic |
| TCATGATACTTGGGATCATA+TGG | 0.400148 | 2_3:-46636125 | None:intergenic |
| AGGGTATCCACCAGCATTGT+TGG | 0.402771 | 2_3:-46636324 | None:intergenic |
| TTCACATTCAAATAAGAATC+AGG | 0.404060 | 2_3:-46635512 | None:intergenic |
| GGAGGGTAAGCATTGTTTGG+AGG | 0.406350 | 2_3:-46636302 | None:intergenic |
| ATTGGCCAAAAGAATTTGTC+TGG | 0.406830 | 2_3:-46636669 | None:intergenic |
| TCGAGCAAAATCGTTTCCTT+TGG | 0.407598 | 2_3:-46634014 | None:intergenic |
| AACCCACTCCTCATGATACT+TGG | 0.409695 | 2_3:-46636135 | None:intergenic |
| AAGGAGAGAGCGGAGGAAGA+AGG | 0.410283 | 2_3:-46633855 | None:intergenic |
| CGATTGGCCCAGTTAGGGTT+AGG | 0.415665 | 2_3:-46633987 | None:intergenic |
| TGCTCCTCAAAATAACTATC+CGG | 0.416452 | 2_3:+46636538 | Msa0294640:CDS |
| TAGGTGAGCCCTTCATTAAT+GGG | 0.416500 | 2_3:+46636093 | Msa0294640:intron |
| AATGTGAAGGAGCAAGATTA+TGG | 0.421958 | 2_3:+46635527 | Msa0294640:CDS |
| CGTTTCCTTTGGTGGACGAT+TGG | 0.426666 | 2_3:-46634003 | None:intergenic |
| GGAGGAGGTCGGCTTATGTT+AGG | 0.428568 | 2_3:-46636497 | None:intergenic |
| TGGTGGAGATGGAGCGAGAG+AGG | 0.431194 | 2_3:-46633821 | None:intergenic |
| ACCTGAAACGCAAATTCATT+AGG | 0.432576 | 2_3:-46636786 | None:intergenic |
| GTTAGGATCGTTGAGGGAAG+AGG | 0.434294 | 2_3:-46633970 | None:intergenic |
| AAAGGAACAGGCGCAATGAT+AGG | 0.434856 | 2_3:+46636180 | Msa0294640:CDS |
| TGAACACTGGCTTGTGGTTG+TGG | 0.437124 | 2_3:+46634049 | Msa0294640:CDS |
| GGAGATGGAGCGAGAGAGGA+AGG | 0.440256 | 2_3:-46633817 | None:intergenic |
| TCTCTGGTCAGATCACCTTC+AGG | 0.445357 | 2_3:-46634077 | None:intergenic |
| GGGTATCCACCAGCATTGTT+GGG | 0.447108 | 2_3:-46636323 | None:intergenic |
| GCGTATCCGCCTTGATTTGG+AGG | 0.451222 | 2_3:-46636419 | None:intergenic |
| GGAAGAGGTGGTAGGGCGTG+TGG | 0.455163 | 2_3:-46633955 | None:intergenic |
| AGTGGTGGTTGTGGTGGAGA+TGG | 0.455753 | 2_3:-46633832 | None:intergenic |
| CGCAAATTCATTAGGAAGAA+GGG | 0.463797 | 2_3:-46636778 | None:intergenic |
| GGAAGAAGGAGTGGTGGTTG+TGG | 0.465371 | 2_3:-46633841 | None:intergenic |
| CTCGTGCTAATGAAAGGAAC+AGG | 0.465708 | 2_3:+46636168 | Msa0294640:CDS |
| GCATATCCGCCTTGATTTGG+AGG | 0.467209 | 2_3:-46636395 | None:intergenic |
| GAAGAGAAGAGAGTGAGATT+GGG | 0.468266 | 2_3:-46633730 | None:intergenic |
| TATCCACCGCCTTGATTTGG+AGG | 0.469888 | 2_3:-46636443 | None:intergenic |
| GGAAGGGAGAAGGATGTGAC+GGG | 0.471804 | 2_3:-46633919 | None:intergenic |
| AAGCAGTGTCTCTTCCAAAC+AGG | 0.473380 | 2_3:-46636631 | None:intergenic |
| GGAAGAACCCATCGAACCTT+GGG | 0.475427 | 2_3:-46635491 | None:intergenic |
| AGGAGGAGGTCCGCTCATGT+TGG | 0.477573 | 2_3:-46636474 | None:intergenic |
| GTGGACGATTGGCCCAGTTA+GGG | 0.478383 | 2_3:-46633992 | None:intergenic |
| GGAGAACGCGAGAGAAGATC+TGG | 0.480186 | 2_3:-46633773 | None:intergenic |
| ATTCATTACTTTATCTACAT+TGG | 0.483104 | 2_3:-46636687 | None:intergenic |
| GTGTATCCGCCTTGATTTGG+AGG | 0.485223 | 2_3:-46636371 | None:intergenic |
| GGGTAAGCATTGTTTGGAGG+TGG | 0.485288 | 2_3:-46636299 | None:intergenic |
| CAACAAAACCAGAACATGGC+AGG | 0.486858 | 2_3:+46636563 | Msa0294640:CDS |
| ACGCAAATTCATTAGGAAGA+AGG | 0.487709 | 2_3:-46636779 | None:intergenic |
| ACTATCAATAATCTCATCTC+TGG | 0.487847 | 2_3:-46634093 | None:intergenic |
| AGAAGGAGTGGTGGTTGTGG+TGG | 0.494573 | 2_3:-46633838 | None:intergenic |
| AGCGGAGGAAGAAGGAGTGG+TGG | 0.499017 | 2_3:-46633847 | None:intergenic |
| AACTGCTTGCCCATTAATGA+AGG | 0.499721 | 2_3:-46636102 | None:intergenic |
| GCAGGGATGCCTCCAAATGC+TGG | 0.500963 | 2_3:+46636581 | Msa0294640:CDS |
| CAGAACTGCCCAAGGTTCGA+TGG | 0.506009 | 2_3:+46635483 | Msa0294640:intron |
| GCTCCTCAAAATAACTATCC+GGG | 0.508204 | 2_3:+46636539 | Msa0294640:CDS |
| GTGGAGAAAGCGCGGAAGGA+AGG | 0.509822 | 2_3:-46633936 | None:intergenic |
| ATCCGCCTTGGTTGTTGGGA+GGG | 0.510147 | 2_3:-46636343 | None:intergenic |
| AGGAAGAACCCATCGAACCT+TGG | 0.510570 | 2_3:-46635492 | None:intergenic |
| TTTGACCATCCAGCATTTGG+AGG | 0.515696 | 2_3:-46636590 | None:intergenic |
| GAGAGCGGAGGAAGAAGGAG+TGG | 0.516115 | 2_3:-46633850 | None:intergenic |
| ATCCACCGCCTTGATTTGGA+GGG | 0.518306 | 2_3:-46636442 | None:intergenic |
| GTGTCTCTTCCAAACAGGTC+AGG | 0.518983 | 2_3:-46636626 | None:intergenic |
| GGAGGTCCGCTCATGTTGGG+GGG | 0.523071 | 2_3:-46636470 | None:intergenic |
| AGGAGCACCATATCCACTGT+TGG | 0.526278 | 2_3:-46636522 | None:intergenic |
| GGATATGCCCCTCCAAATCA+AGG | 0.528525 | 2_3:+46636410 | Msa0294640:CDS |
| GCCCCTCCAAATCAAGGCGG+TGG | 0.530754 | 2_3:+46636440 | Msa0294640:CDS |
| TCCAATTGCAGAACTGCCCA+AGG | 0.531629 | 2_3:+46635475 | Msa0294640:intron |
| CATATCCGCCTTGATTTGGA+GGG | 0.532575 | 2_3:-46636394 | None:intergenic |
| ACGGGAAGTGATAGCGGCGG+CGG | 0.534178 | 2_3:-46633901 | None:intergenic |
| ATCTATAAAATCTCATTACA+TGG | 0.534196 | 2_3:-46636741 | None:intergenic |
| AGGACGAAGACGGCGAAGGA+AGG | 0.535192 | 2_3:-46633874 | None:intergenic |
| GCTTACCCTCCCAACAATGC+TGG | 0.535219 | 2_3:+46636314 | Msa0294640:CDS |
| TTGGAGGTGCATATCCGCCT+TGG | 0.535415 | 2_3:-46636355 | None:intergenic |
| GGAGCACCATATCCACTGTT+GGG | 0.536295 | 2_3:-46636521 | None:intergenic |
| GTTAGGGTTAGGATCGTTGA+GGG | 0.537327 | 2_3:-46633976 | None:intergenic |
| ACCCACTCCTCATGATACTT+GGG | 0.538686 | 2_3:-46636134 | None:intergenic |
| GGATACGCCCCTCCAAATCA+AGG | 0.539244 | 2_3:+46636434 | Msa0294640:CDS |
| CGTTGAGGGAAGAGGTGGTA+GGG | 0.539352 | 2_3:-46633962 | None:intergenic |
| GGATATGCACCTCCAAATCA+AGG | 0.542378 | 2_3:+46636362 | Msa0294640:CDS |
| TATCCGCCTTGGTTGTTGGG+AGG | 0.545068 | 2_3:-46636344 | None:intergenic |
| GAGGCCTACTTTGCATGTCT+CGG | 0.545839 | 2_3:-46636259 | None:intergenic |
| AGGAGGTCCGCTCATGTTGG+GGG | 0.547032 | 2_3:-46636471 | None:intergenic |
| TGATTCTTATTTGAATGTGA+AGG | 0.548912 | 2_3:+46635514 | Msa0294640:CDS |
| CGGCGGAGAGAGGACGAAGA+CGG | 0.550708 | 2_3:-46633884 | None:intergenic |
| GTGATAGCGGCGGCGGAGAG+AGG | 0.551290 | 2_3:-46633894 | None:intergenic |
| TGGAGAAAGCGCGGAAGGAA+GGG | 0.551662 | 2_3:-46633935 | None:intergenic |
| TATCCACTGTTGGGAGGAGG+AGG | 0.551690 | 2_3:-46636512 | None:intergenic |
| GATGGAGCGAGAGAGGAAGG+TGG | 0.551999 | 2_3:-46633814 | None:intergenic |
| CGTATCCGCCTTGATTTGGA+GGG | 0.552670 | 2_3:-46636418 | None:intergenic |
| ACATAATATAAATCATGTCT+CGG | 0.553942 | 2_3:-46636715 | None:intergenic |
| GGATACACCCCTCCAAATCA+AGG | 0.555053 | 2_3:+46636386 | Msa0294640:CDS |
| TTTACAGTGAAGAAGAAGCT+AGG | 0.556151 | 2_3:+46635285 | Msa0294640:intron |
| AAGCGCGGAAGGAAGGGAGA+AGG | 0.562664 | 2_3:-46633929 | None:intergenic |
| CCATATCCACTGTTGGGAGG+AGG | 0.564256 | 2_3:-46636515 | None:intergenic |
| ATCCACCAGCATTGTTGGGA+GGG | 0.564357 | 2_3:-46636319 | None:intergenic |
| CGGCTTATGTTAGGAGGAGG+AGG | 0.564365 | 2_3:-46636488 | None:intergenic |
| AGAGAGGACGAAGACGGCGA+AGG | 0.565642 | 2_3:-46633878 | None:intergenic |
| AGAACTGCCCAAGGTTCGAT+GGG | 0.567973 | 2_3:+46635484 | Msa0294640:intron |
| ACAATGCTCGTGCTAATGAA+AGG | 0.568451 | 2_3:+46636162 | Msa0294640:CDS |
| CAACGATCCTAACCCTAACT+GGG | 0.571742 | 2_3:+46633980 | Msa0294640:CDS |
| TGAAAGGAGAAGGGAAAATG+TGG | 0.578997 | 2_3:+46636232 | Msa0294640:CDS |
| TCCACCGCCTTGATTTGGAG+GGG | 0.583520 | 2_3:-46636441 | None:intergenic |
| CTTGACCTGTCGTTATTACG+AGG | 0.583533 | 2_3:-46636203 | None:intergenic |
| TACCCTCCCAACAATGCTGG+TGG | 0.585750 | 2_3:+46636317 | Msa0294640:CDS |
| GGTGGACCAGAATTCTGCAC+TGG | 0.588014 | 2_3:-46636281 | None:intergenic |
| TCGTTGAGGGAAGAGGTGGT+AGG | 0.588704 | 2_3:-46633963 | None:intergenic |
| ACGGCGAAGGAAGGAGAGAG+CGG | 0.593822 | 2_3:-46633865 | None:intergenic |
| ATCCCAAGTATCATGAGGAG+TGG | 0.594093 | 2_3:+46636132 | Msa0294640:CDS |
| AGGATCGTTGAGGGAAGAGG+TGG | 0.594815 | 2_3:-46633967 | None:intergenic |
| GCGTGTGGAGAAAGCGCGGA+AGG | 0.594954 | 2_3:-46633940 | None:intergenic |
| AGGAAGGGAGAAGGATGTGA+CGG | 0.594959 | 2_3:-46633920 | None:intergenic |
| CACTGTTGGGAGGAGGAGGT+CGG | 0.595244 | 2_3:-46636508 | None:intergenic |
| GTATCCGCCTTGATTTGGAG+GGG | 0.596488 | 2_3:-46636417 | None:intergenic |
| ATAGGCCTCGTAATAACGAC+AGG | 0.597786 | 2_3:+46636198 | Msa0294640:CDS |
| GGTCGGCTTATGTTAGGAGG+AGG | 0.598819 | 2_3:-46636491 | None:intergenic |
| GAGCTTTCGTACAAACTGAA+AGG | 0.599639 | 2_3:+46635368 | Msa0294640:CDS |
| TGAACCGAGACATGCAAAGT+AGG | 0.601888 | 2_3:+46636255 | Msa0294640:CDS |
| GGACCAGAATTCTGCACTGG+AGG | 0.603026 | 2_3:-46636278 | None:intergenic |
| TCTCTTCACACACACAGCGA+TGG | 0.607009 | 2_3:+46633746 | Msa0294640:exon |
| CTGGGCCAATCGTCCACCAA+AGG | 0.609373 | 2_3:+46633998 | Msa0294640:CDS |
| TCCCAAGTATCATGAGGAGT+GGG | 0.609416 | 2_3:+46636133 | Msa0294640:CDS |
| CTCCTCAAAATAACTATCCG+GGG | 0.615375 | 2_3:+46636540 | Msa0294640:CDS |
| GGATGCCTCCAAATGCTGGA+TGG | 0.615571 | 2_3:+46636585 | Msa0294640:CDS |
| ATATCCGCCTTGATTTGGAG+GGG | 0.616994 | 2_3:-46636393 | None:intergenic |
| TATCCACCAGCATTGTTGGG+AGG | 0.617145 | 2_3:-46636320 | None:intergenic |
| GGAGGTCGGCTTATGTTAGG+AGG | 0.623865 | 2_3:-46636494 | None:intergenic |
| AACAAAACCAGAACATGGCA+GGG | 0.630196 | 2_3:+46636564 | Msa0294640:CDS |
| ACTGCTTGCCCATTAATGAA+GGG | 0.632956 | 2_3:-46636101 | None:intergenic |
| GTGAAGGAGCAAGATTATGG+AGG | 0.633136 | 2_3:+46635530 | Msa0294640:CDS |
| GCGAAGGAAGGAGAGAGCGG+AGG | 0.635617 | 2_3:-46633862 | None:intergenic |
| GATGTGACGGGAAGTGATAG+CGG | 0.641000 | 2_3:-46633907 | None:intergenic |
| CCTTCCAATAACCTCAGCGA+AGG | 0.647794 | 2_3:-46634126 | None:intergenic |
| AGTTAGGGTTAGGATCGTTG+AGG | 0.648596 | 2_3:-46633977 | None:intergenic |
| CCTTCGCTGAGGTTATTGGA+AGG | 0.652376 | 2_3:+46634126 | Msa0294640:CDS |
| GTGGTTGTGGAGAAGCCTGA+AGG | 0.665057 | 2_3:+46634062 | Msa0294640:CDS |
| GCACCATATCCACTGTTGGG+AGG | 0.668110 | 2_3:-46636518 | None:intergenic |
| ATATGATCCCAAGTATCATG+AGG | 0.674281 | 2_3:+46636127 | Msa0294640:CDS |
| CGACCTCCTCCTCCCAACAG+TGG | 0.676748 | 2_3:+46636509 | Msa0294640:CDS |
| TTACATCAAAACCTTCGCTG+AGG | 0.678193 | 2_3:+46634115 | Msa0294640:CDS |
| GGATACCCTCCCAACAACCA+AGG | 0.680141 | 2_3:+46636338 | Msa0294640:CDS |
| GGGGCAACAAAACCAGAACA+TGG | 0.684830 | 2_3:+46636559 | Msa0294640:CDS |
| TAGGGCGTGTGGAGAAAGCG+CGG | 0.694580 | 2_3:-46633944 | None:intergenic |
| GTGACGGGAAGTGATAGCGG+CGG | 0.706683 | 2_3:-46633904 | None:intergenic |
| TACCCTCCCAACAACCAAGG+CGG | 0.715418 | 2_3:+46636341 | Msa0294640:CDS |
| TACACCCCTCCAAATCAAGG+CGG | 0.742876 | 2_3:+46636389 | Msa0294640:CDS |
| TACGCCCCTCCAAATCAAGG+CGG | 0.767202 | 2_3:+46636437 | Msa0294640:CDS |
| TATGCACCTCCAAATCAAGG+CGG | 0.782403 | 2_3:+46636365 | Msa0294640:CDS |
| TATGCCCCTCCAAATCAAGG+CGG | 0.782403 | 2_3:+46636413 | Msa0294640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTTTAAATTTTTTT+AGG | + | chr2_3:46634257-46634276 | Msa0294640:intron | 0.0% |
| !!! | ATTTTTTTTAAATTTTTTTA+GGG | + | chr2_3:46634258-46634277 | Msa0294640:intron | 0.0% |
| !!! | TTTAAAAAATAGTTAGTTTT+TGG | + | chr2_3:46634534-46634553 | Msa0294640:intron | 10.0% |
| !!! | TTAAAAAATAGTTAGTTTTT+GGG | + | chr2_3:46634535-46634554 | Msa0294640:intron | 10.0% |
| !! | AAAAAAAAGTAATAGATATA+GGG | - | chr2_3:46635143-46635162 | None:intergenic | 10.0% |
| !! | AAAAAAAAAGTAATAGATAT+AGG | - | chr2_3:46635144-46635163 | None:intergenic | 10.0% |
| !! | ACAATATAAACCTAAAAATA+CGG | - | chr2_3:46634216-46634235 | None:intergenic | 15.0% |
| !!! | TAAAAAATAGTTAGTTTTTG+GGG | + | chr2_3:46634536-46634555 | Msa0294640:intron | 15.0% |
| !! | TTATAAGAAATTATGGAAAA+TGG | + | chr2_3:46634583-46634602 | Msa0294640:intron | 15.0% |
| !! | TATAAGAAATTATGGAAAAT+GGG | + | chr2_3:46634584-46634603 | Msa0294640:intron | 15.0% |
| !!! | CTTTTATTATACTTAATTGT+AGG | - | chr2_3:46635671-46635690 | None:intergenic | 15.0% |
| !!! | TCTAAATAGCATTTTTTAAA+TGG | - | chr2_3:46635708-46635727 | None:intergenic | 15.0% |
| !! | AAATGTAAATTAGGGTTTAT+GGG | - | chr2_3:46633706-46633725 | None:intergenic | 20.0% |
| !!! | CTTTTTTATTCCGTATTTTT+AGG | + | chr2_3:46634203-46634222 | Msa0294640:intron | 20.0% |
| !!! | CTATTTTATTGAATTTGATG+TGG | + | chr2_3:46634417-46634436 | Msa0294640:intron | 20.0% |
| !!! | TAATTTTTCTGAATTTGATG+TGG | + | chr2_3:46634475-46634494 | Msa0294640:intron | 20.0% |
| !!! | AAAAAATAGTTAGTTTTTGG+GGG | + | chr2_3:46634537-46634556 | Msa0294640:intron | 20.0% |
| !! | TTGTGCATTATAAGAAATTA+TGG | + | chr2_3:46634576-46634595 | Msa0294640:intron | 20.0% |
| !! | ACAAGTTCTCAAATATATTA+TGG | - | chr2_3:46634611-46634630 | None:intergenic | 20.0% |
| !!! | GATTATAAACAAAGTGATTT+TGG | + | chr2_3:46634828-46634847 | Msa0294640:intron | 20.0% |
| !! | TATAGAAATAGCTTATACAT+AGG | - | chr2_3:46634943-46634962 | None:intergenic | 20.0% |
| !! | ACTCTGATTATTTATTTATG+TGG | + | chr2_3:46635249-46635268 | Msa0294640:intron | 20.0% |
| !! | TGATTATTTATTTATGTGGT+TGG | + | chr2_3:46635253-46635272 | Msa0294640:intron | 20.0% |
| !! | GACATAATGAATATAATTAG+AGG | - | chr2_3:46635581-46635600 | None:intergenic | 20.0% |
| !! | ATACATCAAACAACAAATAT+TGG | - | chr2_3:46636046-46636065 | None:intergenic | 20.0% |
| !! | ATTCATTACTTTATCTACAT+TGG | - | chr2_3:46636690-46636709 | None:intergenic | 20.0% |
| !! | ACATAATATAAATCATGTCT+CGG | - | chr2_3:46636718-46636737 | None:intergenic | 20.0% |
| !! | ATCTATAAAATCTCATTACA+TGG | - | chr2_3:46636744-46636763 | None:intergenic | 20.0% |
| ! | GAAATGTAAATTAGGGTTTA+TGG | - | chr2_3:46633707-46633726 | None:intergenic | 25.0% |
| ! | TGGGAATGAAATGTAAATTA+GGG | - | chr2_3:46633714-46633733 | None:intergenic | 25.0% |
| ! | TTGGGAATGAAATGTAAATT+AGG | - | chr2_3:46633715-46633734 | None:intergenic | 25.0% |
| !! | TGCTATTATGTGATAATGAA+TGG | + | chr2_3:46634360-46634379 | Msa0294640:intron | 25.0% |
| !!! | GATAATGAATGGATTGTTTT+CGG | + | chr2_3:46634371-46634390 | Msa0294640:intron | 25.0% |
| !! | ATTGAATTTGATGTGGTTTT+AGG | + | chr2_3:46634424-46634443 | Msa0294640:intron | 25.0% |
| ! | GCATTATGAGAAATTGAATA+TGG | + | chr2_3:46634647-46634666 | Msa0294640:intron | 25.0% |
| ! | AGAATACTATTATGTGAGAA+TGG | + | chr2_3:46634782-46634801 | Msa0294640:intron | 25.0% |
| !! | AATAAGTTGAAAACAGCTTA+TGG | + | chr2_3:46635047-46635066 | Msa0294640:intron | 25.0% |
| !!! | ATTGAGAATATTGATTCTGA+AGG | + | chr2_3:46635191-46635210 | Msa0294640:intron | 25.0% |
| !! | ACTGAAAGGTATATAATACA+TGG | + | chr2_3:46635382-46635401 | Msa0294640:intron | 25.0% |
| ! | TTCACATTCAAATAAGAATC+AGG | - | chr2_3:46635515-46635534 | None:intergenic | 25.0% |
| !! | TGATTCTTATTTGAATGTGA+AGG | + | chr2_3:46635514-46635533 | Msa0294640:CDS | 25.0% |
| ! | CATTCCTTATATATATACAC+AGG | - | chr2_3:46635634-46635653 | None:intergenic | 25.0% |
| ! | AAAACATCAGTATACTACAA+AGG | - | chr2_3:46635818-46635837 | None:intergenic | 25.0% |
| ! | CTATGAATTATAGCATTAGT+AGG | + | chr2_3:46635962-46635981 | Msa0294640:intron | 25.0% |
| ! | TCATATTTCTTGATGTAGAA+TGG | + | chr2_3:46636020-46636039 | Msa0294640:intron | 25.0% |
| !!! | AAGAAATTTTGAAAGGAGAA+GGG | + | chr2_3:46636223-46636242 | Msa0294640:CDS | 25.0% |
| !! | GATTTTATAGATCTTATGTC+TGG | + | chr2_3:46636752-46636771 | Msa0294640:three_prime_UTR | 25.0% |
| ACTATCAATAATCTCATCTC+TGG | - | chr2_3:46634096-46634115 | None:intergenic | 30.0% | |
| !!! | ATTTTTTTAGGGTTTTCCAC+TGG | + | chr2_3:46634269-46634288 | Msa0294640:intron | 30.0% |
| !!! | TTTTTTTAGGGTTTTCCACT+GGG | + | chr2_3:46634270-46634289 | Msa0294640:intron | 30.0% |
| ! | TCTGAATTTGATGTGGTTTT+AGG | + | chr2_3:46634482-46634501 | Msa0294640:intron | 30.0% |
| ATTCTGTGAGAATGAATGTA+TGG | + | chr2_3:46634750-46634769 | Msa0294640:intron | 30.0% | |
| !!! | GTTTGGATAAGCATCTTTTT+TGG | + | chr2_3:46634855-46634874 | Msa0294640:intron | 30.0% |
| TTTACAGCTTATAACACAAG+TGG | + | chr2_3:46634900-46634919 | Msa0294640:intron | 30.0% | |
| !! | AAAGTTTTGTGAGACTGTTT+GGG | - | chr2_3:46635106-46635125 | None:intergenic | 30.0% |
| !! | AAAAGTTTTGTGAGACTGTT+TGG | - | chr2_3:46635107-46635126 | None:intergenic | 30.0% |
| ! | CAAAACTTTTGTCAGTAGTT+AGG | + | chr2_3:46635117-46635136 | Msa0294640:intron | 30.0% |
| ! | TTGAATGAATGGTTGTCTTT+TGG | + | chr2_3:46635220-46635239 | Msa0294640:intron | 30.0% |
| AATGAATATAATTAGAGGCC+AGG | - | chr2_3:46635576-46635595 | None:intergenic | 30.0% | |
| GTCTCCTGTGTATATATATA+AGG | + | chr2_3:46635627-46635646 | Msa0294640:intron | 30.0% | |
| TAACCTTTGTGGTATACTAA+GGG | + | chr2_3:46635839-46635858 | Msa0294640:intron | 30.0% | |
| GTATAGTAACAGATGACAAT+TGG | - | chr2_3:46635894-46635913 | None:intergenic | 30.0% | |
| TGTCATCTGTTACTATACTT+TGG | + | chr2_3:46635896-46635915 | Msa0294640:intron | 30.0% | |
| TGAATTATAGCATTAGTAGG+TGG | + | chr2_3:46635965-46635984 | Msa0294640:intron | 30.0% | |
| GAATTATAGCATTAGTAGGT+GGG | + | chr2_3:46635966-46635985 | Msa0294640:intron | 30.0% | |
| AATTATAGCATTAGTAGGTG+GGG | + | chr2_3:46635967-46635986 | Msa0294640:intron | 30.0% | |
| ! | ACAGGTCAAGAAATTTTGAA+AGG | + | chr2_3:46636216-46636235 | Msa0294640:CDS | 30.0% |
| !! | CAAGAAATTTTGAAAGGAGA+AGG | + | chr2_3:46636222-46636241 | Msa0294640:CDS | 30.0% |
| ! | ATGATCCAGACAAATTCTTT+TGG | + | chr2_3:46636664-46636683 | Msa0294640:three_prime_UTR | 30.0% |
| TAATGCACAACAAACAGAAC+AGG | - | chr2_3:46634566-46634585 | None:intergenic | 35.0% | |
| !!! | AAAGTGATTTTGGCTCTGTT+TGG | + | chr2_3:46634838-46634857 | Msa0294640:intron | 35.0% |
| TTTACAGTGAAGAAGAAGCT+AGG | + | chr2_3:46635285-46635304 | Msa0294640:intron | 35.0% | |
| ! | ACTAGACACTACTTTGCTTT+TGG | + | chr2_3:46635329-46635348 | Msa0294640:CDS | 35.0% |
| AATGTGAAGGAGCAAGATTA+TGG | + | chr2_3:46635527-46635546 | Msa0294640:CDS | 35.0% | |
| !! | TTGAAGTGTTGCTTATACAG+AGG | + | chr2_3:46635770-46635789 | Msa0294640:intron | 35.0% |
| !! | TGAAGTGTTGCTTATACAGA+GGG | + | chr2_3:46635771-46635790 | Msa0294640:intron | 35.0% |
| ! | CTGATGTTTTGTAACCTTTG+TGG | + | chr2_3:46635828-46635847 | Msa0294640:intron | 35.0% |
| GTAACCTTTGTGGTATACTA+AGG | + | chr2_3:46635838-46635857 | Msa0294640:intron | 35.0% | |
| ! | ATTGGTAAAATGACTAGCCA+CGG | - | chr2_3:46635876-46635895 | None:intergenic | 35.0% |
| ATTATAGCATTAGTAGGTGG+GGG | + | chr2_3:46635968-46635987 | Msa0294640:intron | 35.0% | |
| !!! | TTTTTTGTTTCCCTCTCACT+AGG | + | chr2_3:46636074-46636093 | Msa0294640:intron | 35.0% |
| TCATGATACTTGGGATCATA+TGG | - | chr2_3:46636128-46636147 | None:intergenic | 35.0% | |
| ATATGATCCCAAGTATCATG+AGG | + | chr2_3:46636127-46636146 | Msa0294640:CDS | 35.0% | |
| TGCTCCTCAAAATAACTATC+CGG | + | chr2_3:46636538-46636557 | Msa0294640:CDS | 35.0% | |
| TTATTTGACCATCCAGCATT+TGG | - | chr2_3:46636596-46636615 | None:intergenic | 35.0% | |
| ATTGGCCAAAAGAATTTGTC+TGG | - | chr2_3:46636672-46636691 | None:intergenic | 35.0% | |
| CGCAAATTCATTAGGAAGAA+GGG | - | chr2_3:46636781-46636800 | None:intergenic | 35.0% | |
| ACGCAAATTCATTAGGAAGA+AGG | - | chr2_3:46636782-46636801 | None:intergenic | 35.0% | |
| TCCTAATGAATTTGCGTTTC+AGG | + | chr2_3:46636785-46636804 | Msa0294640:three_prime_UTR | 35.0% | |
| ACCTGAAACGCAAATTCATT+AGG | - | chr2_3:46636789-46636808 | None:intergenic | 35.0% | |
| GAAGAGAAGAGAGTGAGATT+GGG | - | chr2_3:46633733-46633752 | None:intergenic | 40.0% | |
| TGAAGAGAAGAGAGTGAGAT+TGG | - | chr2_3:46633734-46633753 | None:intergenic | 40.0% | |
| AGCAAAATCGTTTCCTTTGG+TGG | - | chr2_3:46634014-46634033 | None:intergenic | 40.0% | |
| TCGAGCAAAATCGTTTCCTT+TGG | - | chr2_3:46634017-46634036 | None:intergenic | 40.0% | |
| ! | AAGGAAACGATTTTGCTCGA+TGG | + | chr2_3:46634017-46634036 | Msa0294640:CDS | 40.0% |
| ! | ATGGATGCGATTTTGAACAC+TGG | + | chr2_3:46634036-46634055 | Msa0294640:CDS | 40.0% |
| TTACATCAAAACCTTCGCTG+AGG | + | chr2_3:46634115-46634134 | Msa0294640:CDS | 40.0% | |
| AAAACCTTCGCTGAGGTTAT+TGG | + | chr2_3:46634122-46634141 | Msa0294640:CDS | 40.0% | |
| AAAGAATTTCCTTCACCCAG+TGG | - | chr2_3:46634288-46634307 | None:intergenic | 40.0% | |
| !!! | GCATCTTTTTTGGCTCTGTT+TGG | + | chr2_3:46634865-46634884 | Msa0294640:intron | 40.0% |
| GCTGTTGTCATAAGCTATCT+TGG | + | chr2_3:46635013-46635032 | Msa0294640:intron | 40.0% | |
| GAAGGCTGTGTTTGAATGAA+TGG | + | chr2_3:46635209-46635228 | Msa0294640:intron | 40.0% | |
| GAGCTTTCGTACAAACTGAA+AGG | + | chr2_3:46635368-46635387 | Msa0294640:CDS | 40.0% | |
| AATACCCACAGCAAAGTCTT+GGG | - | chr2_3:46635733-46635752 | None:intergenic | 40.0% | |
| !! | GAAGTGTTGCTTATACAGAG+GGG | + | chr2_3:46635772-46635791 | Msa0294640:intron | 40.0% |
| !! | AAGTGTTGCTTATACAGAGG+GGG | + | chr2_3:46635773-46635792 | Msa0294640:intron | 40.0% |
| CAACCCTTAGTATACCACAA+AGG | - | chr2_3:46635845-46635864 | None:intergenic | 40.0% | |
| ! | TTGGTAAAATGACTAGCCAC+GGG | - | chr2_3:46635875-46635894 | None:intergenic | 40.0% |
| TAGGTGAGCCCTTCATTAAT+GGG | + | chr2_3:46636093-46636112 | Msa0294640:intron | 40.0% | |
| ACTGCTTGCCCATTAATGAA+GGG | - | chr2_3:46636104-46636123 | None:intergenic | 40.0% | |
| AACTGCTTGCCCATTAATGA+AGG | - | chr2_3:46636105-46636124 | None:intergenic | 40.0% | |
| ACAATGCTCGTGCTAATGAA+AGG | + | chr2_3:46636162-46636181 | Msa0294640:CDS | 40.0% | |
| TGAAAGGAGAAGGGAAAATG+TGG | + | chr2_3:46636232-46636251 | Msa0294640:CDS | 40.0% | |
| GCTCCTCAAAATAACTATCC+GGG | + | chr2_3:46636539-46636558 | Msa0294640:CDS | 40.0% | |
| CTCCTCAAAATAACTATCCG+GGG | + | chr2_3:46636540-46636559 | Msa0294640:CDS | 40.0% | |
| AACAAAACCAGAACATGGCA+GGG | + | chr2_3:46636564-46636583 | Msa0294640:CDS | 40.0% | |
| ! | TGGTTAGGGTTAGGGTTTTG+GGG | - | chr2_3:46633797-46633816 | None:intergenic | 45.0% |
| ! | GTGGTTAGGGTTAGGGTTTT+GGG | - | chr2_3:46633798-46633817 | None:intergenic | 45.0% |
| GTTAGGGTTAGGATCGTTGA+GGG | - | chr2_3:46633979-46633998 | None:intergenic | 45.0% | |
| AGTTAGGGTTAGGATCGTTG+AGG | - | chr2_3:46633980-46633999 | None:intergenic | 45.0% | |
| TCAACGATCCTAACCCTAAC+TGG | + | chr2_3:46633979-46633998 | Msa0294640:CDS | 45.0% | |
| CAACGATCCTAACCCTAACT+GGG | + | chr2_3:46633980-46633999 | Msa0294640:CDS | 45.0% | |
| !!! | CGATTTTGAACACTGGCTTG+TGG | + | chr2_3:46634043-46634062 | Msa0294640:CDS | 45.0% |
| GTGAAGGAGCAAGATTATGG+AGG | + | chr2_3:46635530-46635549 | Msa0294640:CDS | 45.0% | |
| ATAATTAGAGGCCAGGTGAC+AGG | - | chr2_3:46635569-46635588 | None:intergenic | 45.0% | |
| AGATACCCAAGACTTTGCTG+TGG | + | chr2_3:46635725-46635744 | Msa0294640:intron | 45.0% | |
| ! | GATACCCAAGACTTTGCTGT+GGG | + | chr2_3:46635726-46635745 | Msa0294640:intron | 45.0% |
| GAATACCCACAGCAAAGTCT+TGG | - | chr2_3:46635734-46635753 | None:intergenic | 45.0% | |
| !! | AGTGTTGCTTATACAGAGGG+GGG | + | chr2_3:46635774-46635793 | Msa0294640:intron | 45.0% |
| CTAGGTGAGCCCTTCATTAA+TGG | + | chr2_3:46636092-46636111 | Msa0294640:intron | 45.0% | |
| ATCCCAAGTATCATGAGGAG+TGG | + | chr2_3:46636132-46636151 | Msa0294640:CDS | 45.0% | |
| TCCCAAGTATCATGAGGAGT+GGG | + | chr2_3:46636133-46636152 | Msa0294640:CDS | 45.0% | |
| ACCCACTCCTCATGATACTT+GGG | - | chr2_3:46636137-46636156 | None:intergenic | 45.0% | |
| AACCCACTCCTCATGATACT+TGG | - | chr2_3:46636138-46636157 | None:intergenic | 45.0% | |
| CTCGTGCTAATGAAAGGAAC+AGG | + | chr2_3:46636168-46636187 | Msa0294640:CDS | 45.0% | |
| AAAGGAACAGGCGCAATGAT+AGG | + | chr2_3:46636180-46636199 | Msa0294640:CDS | 45.0% | |
| ATAGGCCTCGTAATAACGAC+AGG | + | chr2_3:46636198-46636217 | Msa0294640:CDS | 45.0% | |
| CTTGACCTGTCGTTATTACG+AGG | - | chr2_3:46636206-46636225 | None:intergenic | 45.0% | |
| TGAACCGAGACATGCAAAGT+AGG | + | chr2_3:46636255-46636274 | Msa0294640:CDS | 45.0% | |
| ! | TTGGGAGGGTAAGCATTGTT+TGG | - | chr2_3:46636308-46636327 | None:intergenic | 45.0% |
| GGATATGCACCTCCAAATCA+AGG | + | chr2_3:46636362-46636381 | Msa0294640:CDS | 45.0% | |
| TATGCACCTCCAAATCAAGG+CGG | + | chr2_3:46636365-46636384 | Msa0294640:CDS | 45.0% | |
| !! | ATATCCGCCTTGATTTGGAG+GGG | - | chr2_3:46636396-46636415 | None:intergenic | 45.0% |
| !! | CATATCCGCCTTGATTTGGA+GGG | - | chr2_3:46636397-46636416 | None:intergenic | 45.0% |
| !! | TGCCCCGGATAGTTATTTTG+AGG | - | chr2_3:46636545-46636564 | None:intergenic | 45.0% |
| !!! | ATGTTCTGGTTTTGTTGCCC+CGG | - | chr2_3:46636560-46636579 | None:intergenic | 45.0% |
| CAACAAAACCAGAACATGGC+AGG | + | chr2_3:46636563-46636582 | Msa0294640:CDS | 45.0% | |
| TTTGACCATCCAGCATTTGG+AGG | - | chr2_3:46636593-46636612 | None:intergenic | 45.0% | |
| AAGCAGTGTCTCTTCCAAAC+AGG | - | chr2_3:46636634-46636653 | None:intergenic | 45.0% | |
| !!! | TAAAAAAGTAAATTTAATTT+TGG | - | chr2_3:46634191-46634210 | None:intergenic | 5.0% |
| !!! | TTATAAAAAATGTTTTTTTT+TGG | + | chr2_3:46634327-46634346 | Msa0294640:intron | 5.0% |
| TCTCTTCACACACACAGCGA+TGG | + | chr2_3:46633746-46633765 | Msa0294640:exon | 50.0% | |
| ! | GGTGGTTAGGGTTAGGGTTT+TGG | - | chr2_3:46633799-46633818 | None:intergenic | 50.0% |
| GAGGAAGGTGGTTAGGGTTA+GGG | - | chr2_3:46633805-46633824 | None:intergenic | 50.0% | |
| AGAGGAAGGTGGTTAGGGTT+AGG | - | chr2_3:46633806-46633825 | None:intergenic | 50.0% | |
| ! | GATGTGACGGGAAGTGATAG+CGG | - | chr2_3:46633910-46633929 | None:intergenic | 50.0% |
| AGGAAGGGAGAAGGATGTGA+CGG | - | chr2_3:46633923-46633942 | None:intergenic | 50.0% | |
| GTTAGGATCGTTGAGGGAAG+AGG | - | chr2_3:46633973-46633992 | None:intergenic | 50.0% | |
| ! | CGTTTCCTTTGGTGGACGAT+TGG | - | chr2_3:46634006-46634025 | None:intergenic | 50.0% |
| !! | TGAACACTGGCTTGTGGTTG+TGG | + | chr2_3:46634049-46634068 | Msa0294640:CDS | 50.0% |
| TCTCTGGTCAGATCACCTTC+AGG | - | chr2_3:46634080-46634099 | None:intergenic | 50.0% | |
| CCTTCCAATAACCTCAGCGA+AGG | - | chr2_3:46634129-46634148 | None:intergenic | 50.0% | |
| CCTTCGCTGAGGTTATTGGA+AGG | + | chr2_3:46634126-46634145 | Msa0294640:CDS | 50.0% | |
| ! | TAGGGTTTTCCACTGGGTGA+AGG | + | chr2_3:46634276-46634295 | Msa0294640:intron | 50.0% |
| TCCAATTGCAGAACTGCCCA+AGG | + | chr2_3:46635475-46635494 | Msa0294640:intron | 50.0% | |
| ACCTTGGGCAGTTCTGCAAT+TGG | - | chr2_3:46635479-46635498 | None:intergenic | 50.0% | |
| AGAACTGCCCAAGGTTCGAT+GGG | + | chr2_3:46635484-46635503 | Msa0294640:intron | 50.0% | |
| GGAAGAACCCATCGAACCTT+GGG | - | chr2_3:46635494-46635513 | None:intergenic | 50.0% | |
| AGGAAGAACCCATCGAACCT+TGG | - | chr2_3:46635495-46635514 | None:intergenic | 50.0% | |
| CTTATACAGAGGGGGGTGAA+TGG | + | chr2_3:46635781-46635800 | Msa0294640:intron | 50.0% | |
| TAAGGGTTGAAGTTCACCCG+TGG | + | chr2_3:46635856-46635875 | Msa0294640:intron | 50.0% | |
| GAGGCCTACTTTGCATGTCT+CGG | - | chr2_3:46636262-46636281 | None:intergenic | 50.0% | |
| ! | GGGTAAGCATTGTTTGGAGG+TGG | - | chr2_3:46636302-46636321 | None:intergenic | 50.0% |
| ! | GGAGGGTAAGCATTGTTTGG+AGG | - | chr2_3:46636305-46636324 | None:intergenic | 50.0% |
| ATCCACCAGCATTGTTGGGA+GGG | - | chr2_3:46636322-46636341 | None:intergenic | 50.0% | |
| TATCCACCAGCATTGTTGGG+AGG | - | chr2_3:46636323-46636342 | None:intergenic | 50.0% | |
| GGGTATCCACCAGCATTGTT+GGG | - | chr2_3:46636326-46636345 | None:intergenic | 50.0% | |
| ! | AGGGTATCCACCAGCATTGT+TGG | - | chr2_3:46636327-46636346 | None:intergenic | 50.0% |
| GCATATCCGCCTTGGTTGTT+GGG | - | chr2_3:46636350-46636369 | None:intergenic | 50.0% | |
| TGCATATCCGCCTTGGTTGT+TGG | - | chr2_3:46636351-46636370 | None:intergenic | 50.0% | |
| !! | GTGTATCCGCCTTGATTTGG+AGG | - | chr2_3:46636374-46636393 | None:intergenic | 50.0% |
| GGATACACCCCTCCAAATCA+AGG | + | chr2_3:46636386-46636405 | Msa0294640:CDS | 50.0% | |
| TACACCCCTCCAAATCAAGG+CGG | + | chr2_3:46636389-46636408 | Msa0294640:CDS | 50.0% | |
| !! | GCATATCCGCCTTGATTTGG+AGG | - | chr2_3:46636398-46636417 | None:intergenic | 50.0% |
| GGATATGCCCCTCCAAATCA+AGG | + | chr2_3:46636410-46636429 | Msa0294640:CDS | 50.0% | |
| TATGCCCCTCCAAATCAAGG+CGG | + | chr2_3:46636413-46636432 | Msa0294640:CDS | 50.0% | |
| !! | GTATCCGCCTTGATTTGGAG+GGG | - | chr2_3:46636372-46636391 | None:intergenic | 50.0% |
| !! | CGTATCCGCCTTGATTTGGA+GGG | - | chr2_3:46636421-46636440 | None:intergenic | 50.0% |
| !! | ATCCACCGCCTTGATTTGGA+GGG | - | chr2_3:46636445-46636464 | None:intergenic | 50.0% |
| !! | TATCCACCGCCTTGATTTGG+AGG | - | chr2_3:46636446-46636465 | None:intergenic | 50.0% |
| ! | GGAGCACCATATCCACTGTT+GGG | - | chr2_3:46636524-46636543 | None:intergenic | 50.0% |
| !! | AGGAGCACCATATCCACTGT+TGG | - | chr2_3:46636525-46636544 | None:intergenic | 50.0% |
| GGGGCAACAAAACCAGAACA+TGG | + | chr2_3:46636559-46636578 | Msa0294640:CDS | 50.0% | |
| CAGTAGACTCCTGACCTGTT+TGG | + | chr2_3:46636617-46636636 | Msa0294640:exon | 50.0% | |
| GTGTCTCTTCCAAACAGGTC+AGG | - | chr2_3:46636629-46636648 | None:intergenic | 50.0% | |
| GGAGAACGCGAGAGAAGATC+TGG | - | chr2_3:46633776-46633795 | None:intergenic | 55.0% | |
| GCGAGAGAGGAAGGTGGTTA+GGG | - | chr2_3:46633811-46633830 | None:intergenic | 55.0% | |
| AGCGAGAGAGGAAGGTGGTT+AGG | - | chr2_3:46633812-46633831 | None:intergenic | 55.0% | |
| ! | AGTGGTGGTTGTGGTGGAGA+TGG | - | chr2_3:46633835-46633854 | None:intergenic | 55.0% |
| AGAAGGAGTGGTGGTTGTGG+TGG | - | chr2_3:46633841-46633860 | None:intergenic | 55.0% | |
| GGAAGAAGGAGTGGTGGTTG+TGG | - | chr2_3:46633844-46633863 | None:intergenic | 55.0% | |
| AAGGAGAGAGCGGAGGAAGA+AGG | - | chr2_3:46633858-46633877 | None:intergenic | 55.0% | |
| GGAAGGGAGAAGGATGTGAC+GGG | - | chr2_3:46633922-46633941 | None:intergenic | 55.0% | |
| ! | TGGAGAAAGCGCGGAAGGAA+GGG | - | chr2_3:46633938-46633957 | None:intergenic | 55.0% |
| CGTTGAGGGAAGAGGTGGTA+GGG | - | chr2_3:46633965-46633984 | None:intergenic | 55.0% | |
| TCGTTGAGGGAAGAGGTGGT+AGG | - | chr2_3:46633966-46633985 | None:intergenic | 55.0% | |
| AGGATCGTTGAGGGAAGAGG+TGG | - | chr2_3:46633970-46633989 | None:intergenic | 55.0% | |
| ! | CGATTGGCCCAGTTAGGGTT+AGG | - | chr2_3:46633990-46634009 | None:intergenic | 55.0% |
| ! | GTGGACGATTGGCCCAGTTA+GGG | - | chr2_3:46633995-46634014 | None:intergenic | 55.0% |
| GTGGTTGTGGAGAAGCCTGA+AGG | + | chr2_3:46634062-46634081 | Msa0294640:CDS | 55.0% | |
| CAGAACTGCCCAAGGTTCGA+TGG | + | chr2_3:46635483-46635502 | Msa0294640:intron | 55.0% | |
| GAAGGGCTCACCTAGTGAGA+GGG | - | chr2_3:46636087-46636106 | None:intergenic | 55.0% | |
| TGAAGGGCTCACCTAGTGAG+AGG | - | chr2_3:46636088-46636107 | None:intergenic | 55.0% | |
| AGGCCTCCAGTGCAGAATTC+TGG | + | chr2_3:46636275-46636294 | Msa0294640:CDS | 55.0% | |
| GGACCAGAATTCTGCACTGG+AGG | - | chr2_3:46636281-46636300 | None:intergenic | 55.0% | |
| GGTGGACCAGAATTCTGCAC+TGG | - | chr2_3:46636284-46636303 | None:intergenic | 55.0% | |
| GCTTACCCTCCCAACAATGC+TGG | + | chr2_3:46636314-46636333 | Msa0294640:CDS | 55.0% | |
| TACCCTCCCAACAATGCTGG+TGG | + | chr2_3:46636317-46636336 | Msa0294640:CDS | 55.0% | |
| GGATACCCTCCCAACAACCA+AGG | + | chr2_3:46636338-46636357 | Msa0294640:CDS | 55.0% | |
| TACCCTCCCAACAACCAAGG+CGG | + | chr2_3:46636341-46636360 | Msa0294640:CDS | 55.0% | |
| ATCCGCCTTGGTTGTTGGGA+GGG | - | chr2_3:46636346-46636365 | None:intergenic | 55.0% | |
| TATCCGCCTTGGTTGTTGGG+AGG | - | chr2_3:46636347-46636366 | None:intergenic | 55.0% | |
| ! | TTGGAGGTGCATATCCGCCT+TGG | - | chr2_3:46636358-46636377 | None:intergenic | 55.0% |
| GGGGTGTATCCGCCTTGATT+TGG | - | chr2_3:46636377-46636396 | None:intergenic | 55.0% | |
| GGGGCATATCCGCCTTGATT+TGG | - | chr2_3:46636401-46636420 | None:intergenic | 55.0% | |
| !! | GCGTATCCGCCTTGATTTGG+AGG | - | chr2_3:46636422-46636441 | None:intergenic | 55.0% |
| GGATACGCCCCTCCAAATCA+AGG | + | chr2_3:46636434-46636453 | Msa0294640:CDS | 55.0% | |
| TACGCCCCTCCAAATCAAGG+CGG | + | chr2_3:46636437-46636456 | Msa0294640:CDS | 55.0% | |
| !! | TCCACCGCCTTGATTTGGAG+GGG | - | chr2_3:46636444-46636463 | None:intergenic | 55.0% |
| GGGTATCCACCGCCTTGATT+TGG | - | chr2_3:46636449-46636468 | None:intergenic | 55.0% | |
| CGGCTTATGTTAGGAGGAGG+AGG | - | chr2_3:46636491-46636510 | None:intergenic | 55.0% | |
| ! | GGTCGGCTTATGTTAGGAGG+AGG | - | chr2_3:46636494-46636513 | None:intergenic | 55.0% |
| ! | GGAGGTCGGCTTATGTTAGG+AGG | - | chr2_3:46636497-46636516 | None:intergenic | 55.0% |
| ! | GGAGGAGGTCGGCTTATGTT+AGG | - | chr2_3:46636500-46636519 | None:intergenic | 55.0% |
| TATCCACTGTTGGGAGGAGG+AGG | - | chr2_3:46636515-46636534 | None:intergenic | 55.0% | |
| CCATATCCACTGTTGGGAGG+AGG | - | chr2_3:46636518-46636537 | None:intergenic | 55.0% | |
| CCTCCTCCCAACAGTGGATA+TGG | + | chr2_3:46636515-46636534 | Msa0294640:CDS | 55.0% | |
| GCACCATATCCACTGTTGGG+AGG | - | chr2_3:46636521-46636540 | None:intergenic | 55.0% | |
| GGATGCCTCCAAATGCTGGA+TGG | + | chr2_3:46636585-46636604 | Msa0294640:CDS | 55.0% | |
| GATGGAGCGAGAGAGGAAGG+TGG | - | chr2_3:46633817-46633836 | None:intergenic | 60.0% | |
| GGAGATGGAGCGAGAGAGGA+AGG | - | chr2_3:46633820-46633839 | None:intergenic | 60.0% | |
| TGGTGGAGATGGAGCGAGAG+AGG | - | chr2_3:46633824-46633843 | None:intergenic | 60.0% | |
| AGCGGAGGAAGAAGGAGTGG+TGG | - | chr2_3:46633850-46633869 | None:intergenic | 60.0% | |
| GAGAGCGGAGGAAGAAGGAG+TGG | - | chr2_3:46633853-46633872 | None:intergenic | 60.0% | |
| ACGGCGAAGGAAGGAGAGAG+CGG | - | chr2_3:46633868-46633887 | None:intergenic | 60.0% | |
| AGGACGAAGACGGCGAAGGA+AGG | - | chr2_3:46633877-46633896 | None:intergenic | 60.0% | |
| AGAGAGGACGAAGACGGCGA+AGG | - | chr2_3:46633881-46633900 | None:intergenic | 60.0% | |
| !! | GTGACGGGAAGTGATAGCGG+CGG | - | chr2_3:46633907-46633926 | None:intergenic | 60.0% |
| AAGCGCGGAAGGAAGGGAGA+AGG | - | chr2_3:46633932-46633951 | None:intergenic | 60.0% | |
| ! | GTGGAGAAAGCGCGGAAGGA+AGG | - | chr2_3:46633939-46633958 | None:intergenic | 60.0% |
| TAGGGCGTGTGGAGAAAGCG+CGG | - | chr2_3:46633947-46633966 | None:intergenic | 60.0% | |
| ! | GGTGGACGATTGGCCCAGTT+AGG | - | chr2_3:46633996-46634015 | None:intergenic | 60.0% |
| CTGGGCCAATCGTCCACCAA+AGG | + | chr2_3:46633998-46634017 | Msa0294640:CDS | 60.0% | |
| AGCTCTGCTGTCCTGTCACC+TGG | + | chr2_3:46635555-46635574 | Msa0294640:intron | 60.0% | |
| GGGGCGTATCCGCCTTGATT+TGG | - | chr2_3:46636425-46636444 | None:intergenic | 60.0% | |
| TACCCTCCCCCCAACATGAG+CGG | + | chr2_3:46636464-46636483 | Msa0294640:CDS | 60.0% | |
| AGGAGGTCCGCTCATGTTGG+GGG | - | chr2_3:46636474-46636493 | None:intergenic | 60.0% | |
| GAGGAGGTCCGCTCATGTTG+GGG | - | chr2_3:46636475-46636494 | None:intergenic | 60.0% | |
| GGAGGAGGTCCGCTCATGTT+GGG | - | chr2_3:46636476-46636495 | None:intergenic | 60.0% | |
| AGGAGGAGGTCCGCTCATGT+TGG | - | chr2_3:46636477-46636496 | None:intergenic | 60.0% | |
| CACTGTTGGGAGGAGGAGGT+CGG | - | chr2_3:46636511-46636530 | None:intergenic | 60.0% | |
| ! | GAGGCATCCCTGCCATGTTC+TGG | - | chr2_3:46636574-46636593 | None:intergenic | 60.0% |
| GCAGGGATGCCTCCAAATGC+TGG | + | chr2_3:46636581-46636600 | Msa0294640:CDS | 60.0% | |
| GCGAAGGAAGGAGAGAGCGG+AGG | - | chr2_3:46633865-46633884 | None:intergenic | 65.0% | |
| CGGCGGAGAGAGGACGAAGA+CGG | - | chr2_3:46633887-46633906 | None:intergenic | 65.0% | |
| !! | ACGGGAAGTGATAGCGGCGG+CGG | - | chr2_3:46633904-46633923 | None:intergenic | 65.0% |
| ! | GCGTGTGGAGAAAGCGCGGA+AGG | - | chr2_3:46633943-46633962 | None:intergenic | 65.0% |
| GGAAGAGGTGGTAGGGCGTG+TGG | - | chr2_3:46633958-46633977 | None:intergenic | 65.0% | |
| GCCCCTCCAAATCAAGGCGG+TGG | + | chr2_3:46636416-46636435 | Msa0294640:CDS | 65.0% | |
| GTCCGCTCATGTTGGGGGGA+GGG | - | chr2_3:46636469-46636488 | None:intergenic | 65.0% | |
| GGAGGTCCGCTCATGTTGGG+GGG | - | chr2_3:46636473-46636492 | None:intergenic | 65.0% | |
| CGACCTCCTCCTCCCAACAG+TGG | + | chr2_3:46636509-46636528 | Msa0294640:CDS | 65.0% | |
| !! | GTGATAGCGGCGGCGGAGAG+AGG | - | chr2_3:46633897-46633916 | None:intergenic | 70.0% |
| GGTCCGCTCATGTTGGGGGG+AGG | - | chr2_3:46636470-46636489 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 46633699 | 46636915 | 46633699 | ID=Msa0294640;Name=Msa0294640 |
| chr2_3 | mRNA | 46633699 | 46636915 | 46633699 | ID=Msa0294640-mRNA-1;Parent=Msa0294640;Name=Msa0294640-mRNA-1;_AED=0.04;_eAED=0.04;_QI=66|1|1|1|1|1|4|293|357 |
| chr2_3 | exon | 46633699 | 46634147 | 46633699 | ID=Msa0294640-mRNA-1:exon:14542;Parent=Msa0294640-mRNA-1 |
| chr2_3 | exon | 46635292 | 46635389 | 46635292 | ID=Msa0294640-mRNA-1:exon:14543;Parent=Msa0294640-mRNA-1 |
| chr2_3 | exon | 46635486 | 46635551 | 46635486 | ID=Msa0294640-mRNA-1:exon:14544;Parent=Msa0294640-mRNA-1 |
| chr2_3 | exon | 46636096 | 46636915 | 46636096 | ID=Msa0294640-mRNA-1:exon:14545;Parent=Msa0294640-mRNA-1 |
| chr2_3 | five_prime_UTR | 46633699 | 46633764 | 46633699 | ID=Msa0294640-mRNA-1:five_prime_utr;Parent=Msa0294640-mRNA-1 |
| chr2_3 | CDS | 46633765 | 46634147 | 46633765 | ID=Msa0294640-mRNA-1:cds;Parent=Msa0294640-mRNA-1 |
| chr2_3 | CDS | 46635292 | 46635389 | 46635292 | ID=Msa0294640-mRNA-1:cds;Parent=Msa0294640-mRNA-1 |
| chr2_3 | CDS | 46635486 | 46635551 | 46635486 | ID=Msa0294640-mRNA-1:cds;Parent=Msa0294640-mRNA-1 |
| chr2_3 | CDS | 46636096 | 46636622 | 46636096 | ID=Msa0294640-mRNA-1:cds;Parent=Msa0294640-mRNA-1 |
| chr2_3 | three_prime_UTR | 46636623 | 46636915 | 46636623 | ID=Msa0294640-mRNA-1:three_prime_utr;Parent=Msa0294640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
