Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1150290 | XP_013448969.1 | 94.141 | 256 | 13 | 2 | 1 | 256 | 1 | 254 | 6.91e-166 | 469 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1150290 | sp|Q8W487|YB95_ARATH | 42.188 | 256 | 135 | 8 | 4 | 256 | 5 | 250 | 1.12e-56 | 184 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1150290 | I3SR78 | 94.141 | 256 | 13 | 2 | 1 | 256 | 1 | 254 | 3.30e-166 | 469 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1070810 | Msa1150290 | 0.811710 | 6.110088e-51 | -8.615850e-47 |
| Msa0294640 | Msa1150290 | 0.800584 | 1.345846e-48 | -8.615850e-47 |
| Msa1118790 | Msa1150290 | 0.803551 | 3.302669e-49 | -8.615850e-47 |
| Msa1150290 | Msa1158630 | 0.806968 | 6.356639e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1150290 | MtrunA17_Chr7g0239661 | 94.141 | 256 | 13 | 2 | 1 | 256 | 1 | 254 | 6.36e-170 | 469 |
| Msa1150290 | MtrunA17_Chr5g0435861 | 47.222 | 252 | 112 | 6 | 20 | 255 | 8 | 254 | 1.11e-68 | 212 |
| Msa1150290 | MtrunA17_Chr4g0001071 | 35.802 | 162 | 93 | 4 | 98 | 256 | 83 | 236 | 1.73e-26 | 103 |
| Msa1150290 | MtrunA17_Chr1g0149801 | 30.049 | 203 | 126 | 6 | 58 | 256 | 43 | 233 | 6.65e-21 | 88.2 |
| Msa1150290 | MtrunA17_Chr7g0257161 | 46.667 | 60 | 32 | 0 | 197 | 256 | 141 | 200 | 1.56e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1150290 | AT5G02050.1 | 47.970 | 271 | 122 | 7 | 1 | 256 | 1 | 267 | 2.27e-67 | 209 |
| Msa1150290 | AT3G55605.1 | 43.985 | 266 | 131 | 9 | 1 | 256 | 1 | 258 | 3.50e-60 | 191 |
| Msa1150290 | AT2G39795.1 | 42.188 | 256 | 135 | 8 | 4 | 256 | 5 | 250 | 1.14e-57 | 184 |
| Msa1150290 | AT5G05990.1 | 38.372 | 258 | 136 | 8 | 18 | 255 | 4 | 258 | 4.01e-45 | 152 |
| Msa1150290 | AT2G39790.1 | 36.232 | 207 | 119 | 7 | 50 | 255 | 45 | 239 | 4.86e-33 | 120 |
| Msa1150290 | AT1G15870.1 | 29.333 | 225 | 140 | 9 | 39 | 256 | 29 | 241 | 2.99e-25 | 100 |
| Msa1150290 | AT1G80720.2 | 31.188 | 202 | 123 | 6 | 58 | 256 | 53 | 241 | 8.33e-24 | 96.7 |
| Msa1150290 | AT1G80720.1 | 31.188 | 202 | 123 | 6 | 58 | 256 | 1 | 189 | 1.08e-23 | 95.1 |
| Msa1150290 | AT4G31930.1 | 29.268 | 246 | 144 | 7 | 19 | 256 | 11 | 234 | 6.86e-19 | 83.2 |
| Msa1150290 | AT4G32605.1 | 29.915 | 117 | 78 | 1 | 144 | 256 | 103 | 219 | 5.51e-11 | 61.2 |
Find 84 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTCATCCGGATTCTTTA+TGG | 0.182617 | 7_4:-33507516 | None:intergenic |
| AGGGTTTAGTGTTAGGGTTT+TGG | 0.197741 | 7_4:-33504949 | None:intergenic |
| AGCGGTGTACATAGACATTT+TGG | 0.270785 | 7_4:-33504995 | None:intergenic |
| GGGTTTGAGGGTTTAGTGTT+AGG | 0.271227 | 7_4:-33504956 | None:intergenic |
| GAAATGCTTTATATAACTAT+TGG | 0.275248 | 7_4:+33507829 | Msa1150290:three_prime_UTR |
| AAATGCTTTATATAACTATT+GGG | 0.328473 | 7_4:+33507830 | Msa1150290:three_prime_UTR |
| CTCTGTTGAGGTGCCACGTT+AGG | 0.340860 | 7_4:-33507341 | None:intergenic |
| CTATCAATCACAACCTCATC+AGG | 0.345649 | 7_4:-33507488 | None:intergenic |
| ATGGAGTGTGTATGGAGTTT+GGG | 0.353451 | 7_4:+33507453 | Msa1150290:CDS |
| GAGAGGGAGTGCGGCGGCGG+TGG | 0.353608 | 7_4:-33505028 | None:intergenic |
| TTCTCATTCTCAATCTTCTC+GGG | 0.361515 | 7_4:-33507380 | None:intergenic |
| GAGTGGAGAAAGGGGTTTGA+GGG | 0.367632 | 7_4:-33504968 | None:intergenic |
| CAAAGACAACAAGGAATACT+TGG | 0.378496 | 7_4:+33507758 | Msa1150290:CDS |
| ATTCTCATTCTCAATCTTCT+CGG | 0.380909 | 7_4:-33507381 | None:intergenic |
| AATGGAGTGTGTATGGAGTT+TGG | 0.383734 | 7_4:+33507452 | Msa1150290:CDS |
| GATTGCGCTGTGGAAGGTTC+TGG | 0.386945 | 7_4:-33505079 | None:intergenic |
| GAGGAGAGGGAGTGCGGCGG+CGG | 0.393871 | 7_4:-33505031 | None:intergenic |
| AGTTGAATAGTTCTTTCTCC+AGG | 0.396432 | 7_4:-33507272 | None:intergenic |
| GTTTAAGTGCATGTTATGTC+AGG | 0.397274 | 7_4:+33507892 | Msa1150290:three_prime_UTR |
| GGTTTGAGGGTTTAGTGTTA+GGG | 0.399619 | 7_4:-33504955 | None:intergenic |
| TGAAGACCAGCTGGTATATG+AGG | 0.426221 | 7_4:+33507538 | Msa1150290:CDS |
| AGGAAGAAATGGAGTGTGTA+TGG | 0.440228 | 7_4:+33507445 | Msa1150290:CDS |
| ATGCACTTAAACTAAAATCA+AGG | 0.449078 | 7_4:-33507881 | None:intergenic |
| TTTGGAGGTGAGTGGAGAAA+GGG | 0.449614 | 7_4:-33504977 | None:intergenic |
| AGACTCTTGTATTCGATTGA+AGG | 0.453749 | 7_4:-33507985 | None:intergenic |
| GACTCTTGTATTCGATTGAA+GGG | 0.479980 | 7_4:-33507984 | None:intergenic |
| TGAGTGGAGAAAGGGGTTTG+AGG | 0.480286 | 7_4:-33504969 | None:intergenic |
| GTGCGGCGGCGGTGGCGCGA+CGG | 0.481559 | 7_4:-33505020 | None:intergenic |
| TTGAAAACAGTCACAACTAA+AGG | 0.487624 | 7_4:-33507422 | None:intergenic |
| AGCTGGTCTTCAGATTCATC+CGG | 0.494031 | 7_4:-33507527 | None:intergenic |
| TTTGAGATCGAGGACAACCC+TGG | 0.494413 | 7_4:+33507254 | Msa1150290:CDS |
| TAGCTTGTCCATAAAGAATC+CGG | 0.497260 | 7_4:+33507508 | Msa1150290:CDS |
| GGCGGTGGCGCGACGGAGAG+CGG | 0.500941 | 7_4:-33505013 | None:intergenic |
| TGGAGGAAGTTGCCGCTGCA+CGG | 0.501833 | 7_4:-33505059 | None:intergenic |
| TTGCCGCTGCACGGCGAGAG+AGG | 0.509670 | 7_4:-33505050 | None:intergenic |
| GGGTTGTCCTCGATCTCAAA+AGG | 0.511746 | 7_4:-33507251 | None:intergenic |
| CGAAGGAGAGTATCATCAGC+GGG | 0.511851 | 7_4:-33505183 | None:intergenic |
| TCTGTTGAGGTGCCACGTTA+GGG | 0.512444 | 7_4:-33507340 | None:intergenic |
| GTTGAATAGTTCTTTCTCCA+GGG | 0.519495 | 7_4:-33507271 | None:intergenic |
| AGAGAGGAGAGGGAGTGCGG+CGG | 0.530798 | 7_4:-33505034 | None:intergenic |
| GGTGACTGCTTTCCCTGATG+AGG | 0.538518 | 7_4:+33507475 | Msa1150290:CDS |
| ACCTCAACAGAGTGAGGATG+AGG | 0.540010 | 7_4:+33507352 | Msa1150290:CDS |
| CTGCACGGCGAGAGAGGAGA+GGG | 0.542154 | 7_4:-33505044 | None:intergenic |
| TGAAATCGACTGTGCTCTTG+AGG | 0.545067 | 7_4:+33505218 | Msa1150290:CDS |
| ACTTGAGAAAAGCCTTCTGT+AGG | 0.546269 | 7_4:-33507674 | None:intergenic |
| GTTGTGGCGAAGGAGGTTAA+CGG | 0.550314 | 7_4:-33505103 | None:intergenic |
| TTGGAGGTGAGTGGAGAAAG+GGG | 0.554857 | 7_4:-33504976 | None:intergenic |
| GCTCTTGAGGATAATAATGA+AGG | 0.555442 | 7_4:+33505231 | Msa1150290:CDS |
| TTGTGTTGGGTGTTATCCCT+CGG | 0.555715 | 7_4:-33507707 | None:intergenic |
| GCCTCATCCTCACTCTGTTG+AGG | 0.559817 | 7_4:-33507353 | None:intergenic |
| AAAGACAACAAGGAATACTT+GGG | 0.563940 | 7_4:+33507759 | Msa1150290:CDS |
| AACGGCGATTGCGCTGTGGA+AGG | 0.565623 | 7_4:-33505085 | None:intergenic |
| GATCTCAAAAGGAAAATCAC+CGG | 0.567645 | 7_4:-33507240 | None:intergenic |
| GGATGAATCTGAAGACCAGC+TGG | 0.570489 | 7_4:+33507529 | Msa1150290:CDS |
| CAGGTCCCTCATATACCAGC+TGG | 0.571273 | 7_4:-33507544 | None:intergenic |
| TTTAAGTGCATGTTATGTCA+GGG | 0.571421 | 7_4:+33507893 | Msa1150290:three_prime_UTR |
| GCGAGAGAGGAGAGGGAGTG+CGG | 0.575299 | 7_4:-33505037 | None:intergenic |
| CCCTCTCGTAGCTTCGCCTA+CGG | 0.578746 | 7_4:+33505144 | Msa1150290:CDS |
| CTCAAGTATCTCGAGATCCG+AGG | 0.584465 | 7_4:+33507690 | Msa1150290:CDS |
| TGCACTTAAACTAAAATCAA+GGG | 0.586997 | 7_4:-33507880 | None:intergenic |
| CACAGTCGATTTCACTGTCA+AGG | 0.589925 | 7_4:-33505209 | None:intergenic |
| TCTCATTCTCAATCTTCTCG+GGG | 0.600825 | 7_4:-33507379 | None:intergenic |
| TCAAGTATCTCGAGATCCGA+GGG | 0.601222 | 7_4:+33507691 | Msa1150290:CDS |
| TTTGGATGAAAACCTACAGA+AGG | 0.605100 | 7_4:+33507662 | Msa1150290:CDS |
| CTAAATGCTTACGTGAACTC+AGG | 0.611960 | 7_4:-33507563 | None:intergenic |
| TCTCCTCTCTCGCCGTGCAG+CGG | 0.617355 | 7_4:+33505047 | Msa1150290:CDS |
| ATCTCAAAAGGAAAATCACC+GGG | 0.618030 | 7_4:-33507239 | None:intergenic |
| TGGAGTGTGTATGGAGTTTG+GGG | 0.622811 | 7_4:+33507454 | Msa1150290:CDS |
| TGCGCTGTGGAAGGTTCTGG+AGG | 0.628252 | 7_4:-33505076 | None:intergenic |
| GAAGACCAGCTGGTATATGA+GGG | 0.628639 | 7_4:+33507539 | Msa1150290:CDS |
| TATCAATCACAACCTCATCA+GGG | 0.630563 | 7_4:-33507487 | None:intergenic |
| GCTGCACGGCGAGAGAGGAG+AGG | 0.631466 | 7_4:-33505045 | None:intergenic |
| TCGAAGGAGAGTATCATCAG+CGG | 0.634573 | 7_4:-33505184 | None:intergenic |
| CGTGGCACCTCAACAGAGTG+AGG | 0.643427 | 7_4:+33507346 | Msa1150290:CDS |
| CATGTTCAACAAAGACAACA+AGG | 0.647062 | 7_4:+33507749 | Msa1150290:CDS |
| TTTCACTGTCAAGGACTCGA+AGG | 0.657777 | 7_4:-33505200 | None:intergenic |
| GCCGTAGGCGAAGCTACGAG+AGG | 0.658744 | 7_4:-33505145 | None:intergenic |
| ACAACAAGGAATACTTGGGG+TGG | 0.664017 | 7_4:+33507763 | Msa1150290:CDS |
| GGTTAACGGCGATTGCGCTG+TGG | 0.671069 | 7_4:-33505089 | None:intergenic |
| TGTTATGTCAGGGTTACTTG+AGG | 0.673570 | 7_4:+33507903 | Msa1150290:three_prime_UTR |
| AAGGAGAGTATCATCAGCGG+GGG | 0.679029 | 7_4:-33505181 | None:intergenic |
| TCAAGTTAACATCCCTAACG+TGG | 0.689768 | 7_4:+33507328 | Msa1150290:CDS |
| GAAGGAGAGTATCATCAGCG+GGG | 0.713416 | 7_4:-33505182 | None:intergenic |
| AAGACAACAAGGAATACTTG+GGG | 0.756411 | 7_4:+33507760 | Msa1150290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAACTTAAAAACAAA+GGG | - | chr7_4:33505286-33505305 | None:intergenic | 10.0% |
| !! | TAAAAAAAACTTAAAAACAA+AGG | - | chr7_4:33505287-33505306 | None:intergenic | 10.0% |
| !!! | AAAAAATTACGTTTGTTAAA+AGG | - | chr7_4:33505257-33505276 | None:intergenic | 15.0% |
| !!! | GTTTCAATTTTTTTTTTGTT+TGG | + | chr7_4:33505375-33505394 | Msa1150290:intron | 15.0% |
| !! | AAATGCTTTATATAACTATT+GGG | + | chr7_4:33507830-33507849 | Msa1150290:three_prime_UTR | 15.0% |
| !! | AAAAACAAAACTTCACAAAA+GGG | - | chr7_4:33505453-33505472 | None:intergenic | 20.0% |
| !! | TAAAAACAAAACTTCACAAA+AGG | - | chr7_4:33505454-33505473 | None:intergenic | 20.0% |
| !!! | TGAAGTTTTGTTTTTATTAG+TGG | + | chr7_4:33505458-33505477 | Msa1150290:intron | 20.0% |
| !! | AAGTTGTGAAAATTCTATAA+TGG | + | chr7_4:33505569-33505588 | Msa1150290:intron | 20.0% |
| !!! | TCATTTTCTCAAAATATTAC+TGG | + | chr7_4:33505790-33505809 | Msa1150290:intron | 20.0% |
| !!! | ATTCATCCAATATCATTTTT+CGG | - | chr7_4:33506109-33506128 | None:intergenic | 20.0% |
| !!! | TTTAGTTGATGTAAATAAAG+TGG | + | chr7_4:33506162-33506181 | Msa1150290:intron | 20.0% |
| !! | AAATATAAACAAAAATGGAG+TGG | - | chr7_4:33506429-33506448 | None:intergenic | 20.0% |
| !! | GAGTGAAATATAAACAAAAA+TGG | - | chr7_4:33506434-33506453 | None:intergenic | 20.0% |
| !! | TAAATCCAGACTTAAAAAAT+AGG | - | chr7_4:33506472-33506491 | None:intergenic | 20.0% |
| !! | GAAATGCTTTATATAACTAT+TGG | + | chr7_4:33507829-33507848 | Msa1150290:three_prime_UTR | 20.0% |
| !!! | GCTAATAATTTTTGAAAACT+TGG | + | chr7_4:33507928-33507947 | Msa1150290:three_prime_UTR | 20.0% |
| ! | AAAACAAAACTTCACAAAAG+GGG | - | chr7_4:33505452-33505471 | None:intergenic | 25.0% |
| ! | TGGATCTTAATAGAATGATA+AGG | + | chr7_4:33505478-33505497 | Msa1150290:intron | 25.0% |
| ! | GGATCTTAATAGAATGATAA+GGG | + | chr7_4:33505479-33505498 | Msa1150290:intron | 25.0% |
| !! | AGAATGATAAGGGTTTTTAT+AGG | + | chr7_4:33505489-33505508 | Msa1150290:intron | 25.0% |
| !! | GAATGATAAGGGTTTTTATA+GGG | + | chr7_4:33505490-33505509 | Msa1150290:intron | 25.0% |
| !! | TAGAATTTTCACAACTTACA+AGG | - | chr7_4:33505566-33505585 | None:intergenic | 25.0% |
| !! | CATGTTCTGAACATTATTAT+TGG | + | chr7_4:33505715-33505734 | Msa1150290:intron | 25.0% |
| ! | TATTTAGTGTTGTCAAATAG+TGG | - | chr7_4:33505917-33505936 | None:intergenic | 25.0% |
| !! | AGTGTCAATAATATTTCTAC+CGG | + | chr7_4:33506310-33506329 | Msa1150290:intron | 25.0% |
| ! | AAATAGGTCATTGAAACATA+CGG | - | chr7_4:33506456-33506475 | None:intergenic | 25.0% |
| !!! | AATGACCTATTTTTTAAGTC+TGG | + | chr7_4:33506464-33506483 | Msa1150290:intron | 25.0% |
| !! | ATTTACATCTAATGGGTAAA+AGG | - | chr7_4:33506608-33506627 | None:intergenic | 25.0% |
| ! | ATGAGCAATTTACATCTAAT+GGG | - | chr7_4:33506615-33506634 | None:intergenic | 25.0% |
| ! | AATGAGCAATTTACATCTAA+TGG | - | chr7_4:33506616-33506635 | None:intergenic | 25.0% |
| ! | TCAAATATTGTTTATTGCTC+TGG | + | chr7_4:33506635-33506654 | Msa1150290:intron | 25.0% |
| ! | AAGAGATATTCAAATCTACA+AGG | - | chr7_4:33506849-33506868 | None:intergenic | 25.0% |
| ! | TATCATTTGCAGATTATCTT+TGG | + | chr7_4:33506935-33506954 | Msa1150290:intron | 25.0% |
| !!! | TGTTCTTTTTTACAGTGATT+TGG | + | chr7_4:33507644-33507663 | Msa1150290:intron | 25.0% |
| ! | TGCACTTAAACTAAAATCAA+GGG | - | chr7_4:33507883-33507902 | None:intergenic | 25.0% |
| ! | ATGCACTTAAACTAAAATCA+AGG | - | chr7_4:33507884-33507903 | None:intergenic | 25.0% |
| ! | TAAAATGAGTGTTTTCGTTG+TGG | - | chr7_4:33505122-33505141 | None:intergenic | 30.0% |
| AAACAAAACTTCACAAAAGG+GGG | - | chr7_4:33505451-33505470 | None:intergenic | 30.0% | |
| TTACAAGGAAATGGAACAAA+GGG | - | chr7_4:33505551-33505570 | None:intergenic | 30.0% | |
| TTTCACAACTTACAAGGAAA+TGG | - | chr7_4:33505560-33505579 | None:intergenic | 30.0% | |
| ! | TGTAGCAGAATTTGAACTTT+TGG | - | chr7_4:33506042-33506061 | None:intergenic | 30.0% |
| TTTCCACCGAAAAATGATAT+TGG | + | chr7_4:33506100-33506119 | Msa1150290:intron | 30.0% | |
| ! | AAGATTTGTCTTTTGTAGTC+TGG | + | chr7_4:33506237-33506256 | Msa1150290:intron | 30.0% |
| ! | AGATTTGTCTTTTGTAGTCT+GGG | + | chr7_4:33506238-33506257 | Msa1150290:intron | 30.0% |
| !! | GGATTTATTTTTCTCTGTCT+TGG | + | chr7_4:33506485-33506504 | Msa1150290:intron | 30.0% |
| ! | AGTCAAGTTAAAGCATGTTT+TGG | - | chr7_4:33506574-33506593 | None:intergenic | 30.0% |
| !! | AAAACATGCTTTAACTTGAC+TGG | + | chr7_4:33506573-33506592 | Msa1150290:intron | 30.0% |
| CGACTTTCAGACTATAAAAA+AGG | - | chr7_4:33506883-33506902 | None:intergenic | 30.0% | |
| ATTCTCATTCTCAATCTTCT+CGG | - | chr7_4:33507384-33507403 | None:intergenic | 30.0% | |
| TTGAAAACAGTCACAACTAA+AGG | - | chr7_4:33507425-33507444 | None:intergenic | 30.0% | |
| ! | TTAGTTGTGACTGTTTTCAA+AGG | + | chr7_4:33507425-33507444 | Msa1150290:CDS | 30.0% |
| ! | ACTGTTTTCAAAGGAAGAAA+TGG | + | chr7_4:33507434-33507453 | Msa1150290:CDS | 30.0% |
| AAAGACAACAAGGAATACTT+GGG | + | chr7_4:33507759-33507778 | Msa1150290:CDS | 30.0% | |
| TTTAAGTGCATGTTATGTCA+GGG | + | chr7_4:33507893-33507912 | Msa1150290:three_prime_UTR | 30.0% | |
| GCTCTTGAGGATAATAATGA+AGG | + | chr7_4:33505231-33505250 | Msa1150290:CDS | 35.0% | |
| TTATAGGGTTGTTAGTGTTG+TGG | + | chr7_4:33505505-33505524 | Msa1150290:intron | 35.0% | |
| CTTACAAGGAAATGGAACAA+AGG | - | chr7_4:33505552-33505571 | None:intergenic | 35.0% | |
| ! | TAGGATTTGATCTGAAGTGT+GGG | - | chr7_4:33505621-33505640 | None:intergenic | 35.0% |
| ! | TTAGGATTTGATCTGAAGTG+TGG | - | chr7_4:33505622-33505641 | None:intergenic | 35.0% |
| ACACTTCAGATCAAATCCTA+AGG | + | chr7_4:33505621-33505640 | Msa1150290:intron | 35.0% | |
| TCAATGTGTCAGTACTTCAT+AGG | + | chr7_4:33505740-33505759 | Msa1150290:intron | 35.0% | |
| TGTTAGTGTCAGTTCTTCAT+AGG | + | chr7_4:33505821-33505840 | Msa1150290:intron | 35.0% | |
| ACACTGTAGTGTTATATCAC+TGG | + | chr7_4:33505975-33505994 | Msa1150290:intron | 35.0% | |
| ! | AGCAGAATTTGAACTTTTGG+TGG | - | chr7_4:33506039-33506058 | None:intergenic | 35.0% |
| !! | CATCCAATATCATTTTTCGG+TGG | - | chr7_4:33506106-33506125 | None:intergenic | 35.0% |
| ACTTTGAGCTACATTCAAAG+TGG | - | chr7_4:33506137-33506156 | None:intergenic | 35.0% | |
| TCAATTGTGTTGTGTGTATG+TGG | + | chr7_4:33506199-33506218 | Msa1150290:intron | 35.0% | |
| CAATTGTGTTGTGTGTATGT+GGG | + | chr7_4:33506200-33506219 | Msa1150290:intron | 35.0% | |
| ! | GTCTTCTTTTGCTACTCATT+TGG | + | chr7_4:33506267-33506286 | Msa1150290:intron | 35.0% |
| CATGTGCAAAACTATGATAC+CGG | - | chr7_4:33506332-33506351 | None:intergenic | 35.0% | |
| ATTGTTTATTGCTCTGGTTG+AGG | + | chr7_4:33506641-33506660 | Msa1150290:intron | 35.0% | |
| TTGTTTATTGCTCTGGTTGA+GGG | + | chr7_4:33506642-33506661 | Msa1150290:intron | 35.0% | |
| !! | TGGTGTTATGTTTGGTATCA+TGG | + | chr7_4:33506683-33506702 | Msa1150290:intron | 35.0% |
| GAGTGTCATATACTGATGAT+TGG | + | chr7_4:33507014-33507033 | Msa1150290:intron | 35.0% | |
| ATATACTGATGATTGGCACT+AGG | + | chr7_4:33507021-33507040 | Msa1150290:intron | 35.0% | |
| ATCTCAAAAGGAAAATCACC+GGG | - | chr7_4:33507242-33507261 | None:intergenic | 35.0% | |
| GATCTCAAAAGGAAAATCAC+CGG | - | chr7_4:33507243-33507262 | None:intergenic | 35.0% | |
| !!! | TGATTTTCCTTTTGAGATCG+AGG | + | chr7_4:33507244-33507263 | Msa1150290:CDS | 35.0% |
| GTTGAATAGTTCTTTCTCCA+GGG | - | chr7_4:33507274-33507293 | None:intergenic | 35.0% | |
| AGTTGAATAGTTCTTTCTCC+AGG | - | chr7_4:33507275-33507294 | None:intergenic | 35.0% | |
| TTCTCATTCTCAATCTTCTC+GGG | - | chr7_4:33507383-33507402 | None:intergenic | 35.0% | |
| TATCAATCACAACCTCATCA+GGG | - | chr7_4:33507490-33507509 | None:intergenic | 35.0% | |
| ! | TAGCTTGTCCATAAAGAATC+CGG | + | chr7_4:33507508-33507527 | Msa1150290:CDS | 35.0% |
| AGATTCATCCGGATTCTTTA+TGG | - | chr7_4:33507519-33507538 | None:intergenic | 35.0% | |
| TTTGGATGAAAACCTACAGA+AGG | + | chr7_4:33507662-33507681 | Msa1150290:CDS | 35.0% | |
| ! | TGCAAAAAGTTGGTTGTGTT+GGG | - | chr7_4:33507723-33507742 | None:intergenic | 35.0% |
| CATGTATTCCTGCAAAAAGT+TGG | - | chr7_4:33507733-33507752 | None:intergenic | 35.0% | |
| CATGTTCAACAAAGACAACA+AGG | + | chr7_4:33507749-33507768 | Msa1150290:CDS | 35.0% | |
| CAAAGACAACAAGGAATACT+TGG | + | chr7_4:33507758-33507777 | Msa1150290:CDS | 35.0% | |
| AAGACAACAAGGAATACTTG+GGG | + | chr7_4:33507760-33507779 | Msa1150290:CDS | 35.0% | |
| GTTTAAGTGCATGTTATGTC+AGG | + | chr7_4:33507892-33507911 | Msa1150290:three_prime_UTR | 35.0% | |
| GACTCTTGTATTCGATTGAA+GGG | - | chr7_4:33507987-33508006 | None:intergenic | 35.0% | |
| AGACTCTTGTATTCGATTGA+AGG | - | chr7_4:33507988-33508007 | None:intergenic | 35.0% | |
| !!! | TGTTAGGGTTTTGGGTAATG+GGG | - | chr7_4:33504943-33504962 | None:intergenic | 40.0% |
| !!! | GTGTTAGGGTTTTGGGTAAT+GGG | - | chr7_4:33504944-33504963 | None:intergenic | 40.0% |
| !!! | AGTGTTAGGGTTTTGGGTAA+TGG | - | chr7_4:33504945-33504964 | None:intergenic | 40.0% |
| ! | GGGTTTAGTGTTAGGGTTTT+GGG | - | chr7_4:33504951-33504970 | None:intergenic | 40.0% |
| ! | AGGGTTTAGTGTTAGGGTTT+TGG | - | chr7_4:33504952-33504971 | None:intergenic | 40.0% |
| GGTTTGAGGGTTTAGTGTTA+GGG | - | chr7_4:33504958-33504977 | None:intergenic | 40.0% | |
| !! | ATAGACATTTTGGAGGTGAG+TGG | - | chr7_4:33504988-33505007 | None:intergenic | 40.0% |
| ! | GGTGTACATAGACATTTTGG+AGG | - | chr7_4:33504995-33505014 | None:intergenic | 40.0% |
| ! | AGCGGTGTACATAGACATTT+TGG | - | chr7_4:33504998-33505017 | None:intergenic | 40.0% |
| AGTGTTGTGGTGAATGTTTG+TGG | + | chr7_4:33505518-33505537 | Msa1150290:intron | 40.0% | |
| ATCAAATCCTAAGGTGTGTC+CGG | + | chr7_4:33505630-33505649 | Msa1150290:intron | 40.0% | |
| CAATGACACATGTCAGATAC+CGG | - | chr7_4:33505652-33505671 | None:intergenic | 40.0% | |
| TAGGTTACTCGTGTTGTCAA+TGG | + | chr7_4:33505840-33505859 | Msa1150290:intron | 40.0% | |
| TACTCGTGTTGTCAATGGAT+CGG | + | chr7_4:33505845-33505864 | Msa1150290:intron | 40.0% | |
| CAAGCAGTGTTGTCAAATGT+CGG | - | chr7_4:33506006-33506025 | None:intergenic | 40.0% | |
| ! | GGTTTGTTTCAAGATCAGTC+TGG | + | chr7_4:33506663-33506682 | Msa1150290:intron | 40.0% |
| !! | GATCAGTCTGGTGTTATGTT+TGG | + | chr7_4:33506675-33506694 | Msa1150290:intron | 40.0% |
| TATGTTTGGTATCATGGTGC+TGG | + | chr7_4:33506689-33506708 | Msa1150290:intron | 40.0% | |
| TCAAAATCATAGTGGCTCCA+TGG | - | chr7_4:33506737-33506756 | None:intergenic | 40.0% | |
| GCAAAGGCTCAAAATCATAG+TGG | - | chr7_4:33506745-33506764 | None:intergenic | 40.0% | |
| CAAAGAATGTTTGGCATCAC+TGG | - | chr7_4:33506802-33506821 | None:intergenic | 40.0% | |
| GCAGCAGATCAAAGAATGTT+TGG | - | chr7_4:33506811-33506830 | None:intergenic | 40.0% | |
| ATTGTGGGACAGATCTACAA+GGG | - | chr7_4:33507089-33507108 | None:intergenic | 40.0% | |
| TTGTAGATCTGTCCCACAAT+CGG | + | chr7_4:33507089-33507108 | Msa1150290:intron | 40.0% | |
| ! | CTTTTCCAGCTTGAATTTCC+CGG | + | chr7_4:33507221-33507240 | Msa1150290:intron | 40.0% |
| TCAAGTTAACATCCCTAACG+TGG | + | chr7_4:33507328-33507347 | Msa1150290:CDS | 40.0% | |
| TCTCATTCTCAATCTTCTCG+GGG | - | chr7_4:33507382-33507401 | None:intergenic | 40.0% | |
| AGGAAGAAATGGAGTGTGTA+TGG | + | chr7_4:33507445-33507464 | Msa1150290:CDS | 40.0% | |
| AATGGAGTGTGTATGGAGTT+TGG | + | chr7_4:33507452-33507471 | Msa1150290:CDS | 40.0% | |
| ATGGAGTGTGTATGGAGTTT+GGG | + | chr7_4:33507453-33507472 | Msa1150290:CDS | 40.0% | |
| CTATCAATCACAACCTCATC+AGG | - | chr7_4:33507491-33507510 | None:intergenic | 40.0% | |
| CTAAATGCTTACGTGAACTC+AGG | - | chr7_4:33507566-33507585 | None:intergenic | 40.0% | |
| ACTTGAGAAAAGCCTTCTGT+AGG | - | chr7_4:33507677-33507696 | None:intergenic | 40.0% | |
| ! | CTGCAAAAAGTTGGTTGTGT+TGG | - | chr7_4:33507724-33507743 | None:intergenic | 40.0% |
| ! | CAACACAACCAACTTTTTGC+AGG | + | chr7_4:33507722-33507741 | Msa1150290:CDS | 40.0% |
| TGTTATGTCAGGGTTACTTG+AGG | + | chr7_4:33507903-33507922 | Msa1150290:three_prime_UTR | 40.0% | |
| GGGTTTGAGGGTTTAGTGTT+AGG | - | chr7_4:33504959-33504978 | None:intergenic | 45.0% | |
| TTTGGAGGTGAGTGGAGAAA+GGG | - | chr7_4:33504980-33504999 | None:intergenic | 45.0% | |
| !! | TTTTGGAGGTGAGTGGAGAA+AGG | - | chr7_4:33504981-33505000 | None:intergenic | 45.0% |
| !! | TCGAAGGAGAGTATCATCAG+CGG | - | chr7_4:33505187-33505206 | None:intergenic | 45.0% |
| TTTCACTGTCAAGGACTCGA+AGG | - | chr7_4:33505203-33505222 | None:intergenic | 45.0% | |
| ! | CACAGTCGATTTCACTGTCA+AGG | - | chr7_4:33505212-33505231 | None:intergenic | 45.0% |
| TGAAATCGACTGTGCTCTTG+AGG | + | chr7_4:33505218-33505237 | Msa1150290:CDS | 45.0% | |
| CACATGTGTCAGTGTAGTGT+CGG | - | chr7_4:33505678-33505697 | None:intergenic | 45.0% | |
| ACTCGTGTTGTCAATGGATC+GGG | + | chr7_4:33505846-33505865 | Msa1150290:intron | 45.0% | |
| GAACAACGACAGCAGTTATG+AGG | - | chr7_4:33506360-33506379 | None:intergenic | 45.0% | |
| GAGCCTTTGCAAAATCGTAG+TGG | + | chr7_4:33506755-33506774 | Msa1150290:intron | 45.0% | |
| ! | GAGCCACTACGATTTTGCAA+AGG | - | chr7_4:33506761-33506780 | None:intergenic | 45.0% |
| GTAGTGGCTCACTGTGATTT+GGG | + | chr7_4:33506771-33506790 | Msa1150290:intron | 45.0% | |
| GATTGTGGGACAGATCTACA+AGG | - | chr7_4:33507090-33507109 | None:intergenic | 45.0% | |
| ! | TCCCACAATCGGTCTTTTTC+AGG | + | chr7_4:33507100-33507119 | Msa1150290:intron | 45.0% |
| CCCTGAAAAAGACCGATTGT+GGG | - | chr7_4:33507104-33507123 | None:intergenic | 45.0% | |
| !! | CCCACAATCGGTCTTTTTCA+GGG | + | chr7_4:33507101-33507120 | Msa1150290:intron | 45.0% |
| !!! | CCACAATCGGTCTTTTTCAG+GGG | + | chr7_4:33507102-33507121 | Msa1150290:intron | 45.0% |
| AATCACCGGGAAATTCAAGC+TGG | - | chr7_4:33507229-33507248 | None:intergenic | 45.0% | |
| TGGAGTGTGTATGGAGTTTG+GGG | + | chr7_4:33507454-33507473 | Msa1150290:CDS | 45.0% | |
| !! | AGCTGGTCTTCAGATTCATC+CGG | - | chr7_4:33507530-33507549 | None:intergenic | 45.0% |
| TGAAGACCAGCTGGTATATG+AGG | + | chr7_4:33507538-33507557 | Msa1150290:CDS | 45.0% | |
| GAAGACCAGCTGGTATATGA+GGG | + | chr7_4:33507539-33507558 | Msa1150290:CDS | 45.0% | |
| TCAAGTATCTCGAGATCCGA+GGG | + | chr7_4:33507691-33507710 | Msa1150290:CDS | 45.0% | |
| ! | TTGTGTTGGGTGTTATCCCT+CGG | - | chr7_4:33507710-33507729 | None:intergenic | 45.0% |
| ACAACAAGGAATACTTGGGG+TGG | + | chr7_4:33507763-33507782 | Msa1150290:CDS | 45.0% | |
| !!! | GTTTTGGGTAATGGGGAAGC+TGG | - | chr7_4:33504936-33504955 | None:intergenic | 50.0% |
| GAGTGGAGAAAGGGGTTTGA+GGG | - | chr7_4:33504971-33504990 | None:intergenic | 50.0% | |
| TGAGTGGAGAAAGGGGTTTG+AGG | - | chr7_4:33504972-33504991 | None:intergenic | 50.0% | |
| TTGGAGGTGAGTGGAGAAAG+GGG | - | chr7_4:33504979-33504998 | None:intergenic | 50.0% | |
| GTTGTGGCGAAGGAGGTTAA+CGG | - | chr7_4:33505106-33505125 | None:intergenic | 50.0% | |
| ! | TGTTTTCGTTGTGGCGAAGG+AGG | - | chr7_4:33505113-33505132 | None:intergenic | 50.0% |
| ! | GAGTGTTTTCGTTGTGGCGA+AGG | - | chr7_4:33505116-33505135 | None:intergenic | 50.0% |
| !!! | GGTTTTGGCTAAAACGCCGT+AGG | - | chr7_4:33505163-33505182 | None:intergenic | 50.0% |
| ! | AGTATCATCAGCGGGGGTTT+TGG | - | chr7_4:33505178-33505197 | None:intergenic | 50.0% |
| !! | AAGGAGAGTATCATCAGCGG+GGG | - | chr7_4:33505184-33505203 | None:intergenic | 50.0% |
| !! | GAAGGAGAGTATCATCAGCG+GGG | - | chr7_4:33505185-33505204 | None:intergenic | 50.0% |
| !! | CGAAGGAGAGTATCATCAGC+GGG | - | chr7_4:33505186-33505205 | None:intergenic | 50.0% |
| TCAGATACCGGACACACCTT+AGG | - | chr7_4:33505640-33505659 | None:intergenic | 50.0% | |
| CTCGTGTTGTCAATGGATCG+GGG | + | chr7_4:33505847-33505866 | Msa1150290:intron | 50.0% | |
| GTTGTCAAATAGTGGCGCTG+TGG | - | chr7_4:33505909-33505928 | None:intergenic | 50.0% | |
| ! | GTTTGGTATCATGGTGCTGG+TGG | + | chr7_4:33506692-33506711 | Msa1150290:intron | 50.0% |
| TTGCGCCTTTGCTGAAACCA+TGG | + | chr7_4:33506717-33506736 | Msa1150290:intron | 50.0% | |
| TGGCTCCATGGTTTCAGCAA+AGG | - | chr7_4:33506725-33506744 | None:intergenic | 50.0% | |
| CGTAGTGGCTCACTGTGATT+TGG | + | chr7_4:33506770-33506789 | Msa1150290:intron | 50.0% | |
| CCCCTGAAAAAGACCGATTG+TGG | - | chr7_4:33507105-33507124 | None:intergenic | 50.0% | |
| !!! | ATCGGTCTTTTTCAGGGGTC+AGG | + | chr7_4:33507107-33507126 | Msa1150290:intron | 50.0% |
| GGGTTGTCCTCGATCTCAAA+AGG | - | chr7_4:33507254-33507273 | None:intergenic | 50.0% | |
| ! | TTTGAGATCGAGGACAACCC+TGG | + | chr7_4:33507254-33507273 | Msa1150290:CDS | 50.0% |
| ! | TCTGTTGAGGTGCCACGTTA+GGG | - | chr7_4:33507343-33507362 | None:intergenic | 50.0% |
| ACCTCAACAGAGTGAGGATG+AGG | + | chr7_4:33507352-33507371 | Msa1150290:CDS | 50.0% | |
| GGATGAATCTGAAGACCAGC+TGG | + | chr7_4:33507529-33507548 | Msa1150290:CDS | 50.0% | |
| CTCAAGTATCTCGAGATCCG+AGG | + | chr7_4:33507690-33507709 | Msa1150290:CDS | 50.0% | |
| GATTGCGCTGTGGAAGGTTC+TGG | - | chr7_4:33505082-33505101 | None:intergenic | 55.0% | |
| GGGTGCTAGTGCTACAGAGT+CGG | - | chr7_4:33505601-33505620 | None:intergenic | 55.0% | |
| ! | CTCTGTTGAGGTGCCACGTT+AGG | - | chr7_4:33507344-33507363 | None:intergenic | 55.0% |
| GCCTCATCCTCACTCTGTTG+AGG | - | chr7_4:33507356-33507375 | None:intergenic | 55.0% | |
| GGTGACTGCTTTCCCTGATG+AGG | + | chr7_4:33507475-33507494 | Msa1150290:CDS | 55.0% | |
| CAGGTCCCTCATATACCAGC+TGG | - | chr7_4:33507547-33507566 | None:intergenic | 55.0% | |
| TGGAGGAAGTTGCCGCTGCA+CGG | - | chr7_4:33505062-33505081 | None:intergenic | 60.0% | |
| ! | TGCGCTGTGGAAGGTTCTGG+AGG | - | chr7_4:33505079-33505098 | None:intergenic | 60.0% |
| AACGGCGATTGCGCTGTGGA+AGG | - | chr7_4:33505088-33505107 | None:intergenic | 60.0% | |
| GGTTAACGGCGATTGCGCTG+TGG | - | chr7_4:33505092-33505111 | None:intergenic | 60.0% | |
| CCGTAGGCGAAGCTACGAGA+GGG | - | chr7_4:33505147-33505166 | None:intergenic | 60.0% | |
| CCCTCTCGTAGCTTCGCCTA+CGG | + | chr7_4:33505144-33505163 | Msa1150290:CDS | 60.0% | |
| TAGTGGCGCTGTGGCACTGT+AGG | - | chr7_4:33505900-33505919 | None:intergenic | 60.0% | |
| CGTGGCACCTCAACAGAGTG+AGG | + | chr7_4:33507346-33507365 | Msa1150290:CDS | 60.0% | |
| ! | AGAGAGGAGAGGGAGTGCGG+CGG | - | chr7_4:33505037-33505056 | None:intergenic | 65.0% |
| GCGAGAGAGGAGAGGGAGTG+CGG | - | chr7_4:33505040-33505059 | None:intergenic | 65.0% | |
| CTGCACGGCGAGAGAGGAGA+GGG | - | chr7_4:33505047-33505066 | None:intergenic | 65.0% | |
| TCTCCTCTCTCGCCGTGCAG+CGG | + | chr7_4:33505047-33505066 | Msa1150290:CDS | 65.0% | |
| GCCGTAGGCGAAGCTACGAG+AGG | - | chr7_4:33505148-33505167 | None:intergenic | 65.0% | |
| GCTGCACGGCGAGAGAGGAG+AGG | - | chr7_4:33505048-33505067 | None:intergenic | 70.0% | |
| TTGCCGCTGCACGGCGAGAG+AGG | - | chr7_4:33505053-33505072 | None:intergenic | 70.0% | |
| ! | GAGGAGAGGGAGTGCGGCGG+CGG | - | chr7_4:33505034-33505053 | None:intergenic | 75.0% |
| ! | GGCGGTGGCGCGACGGAGAG+CGG | - | chr7_4:33505016-33505035 | None:intergenic | 80.0% |
| !! | GAGAGGGAGTGCGGCGGCGG+TGG | - | chr7_4:33505031-33505050 | None:intergenic | 80.0% |
| ! | GTGCGGCGGCGGTGGCGCGA+CGG | - | chr7_4:33505023-33505042 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 33504932 | 33508044 | 33504932 | ID=Msa1150290;Name=Msa1150290 |
| chr7_4 | mRNA | 33504932 | 33508044 | 33504932 | ID=Msa1150290-mRNA-1;Parent=Msa1150290;Name=Msa1150290-mRNA-1;_AED=0.12;_eAED=0.12;_QI=68|1|1|1|1|1|3|226|256 |
| chr7_4 | exon | 33504932 | 33505266 | 33504932 | ID=Msa1150290-mRNA-1:exon:7985;Parent=Msa1150290-mRNA-1 |
| chr7_4 | exon | 33507230 | 33507573 | 33507230 | ID=Msa1150290-mRNA-1:exon:7986;Parent=Msa1150290-mRNA-1 |
| chr7_4 | exon | 33507659 | 33508044 | 33507659 | ID=Msa1150290-mRNA-1:exon:7987;Parent=Msa1150290-mRNA-1 |
| chr7_4 | five_prime_UTR | 33504932 | 33504999 | 33504932 | ID=Msa1150290-mRNA-1:five_prime_utr;Parent=Msa1150290-mRNA-1 |
| chr7_4 | CDS | 33505000 | 33505266 | 33505000 | ID=Msa1150290-mRNA-1:cds;Parent=Msa1150290-mRNA-1 |
| chr7_4 | CDS | 33507230 | 33507573 | 33507230 | ID=Msa1150290-mRNA-1:cds;Parent=Msa1150290-mRNA-1 |
| chr7_4 | CDS | 33507659 | 33507818 | 33507659 | ID=Msa1150290-mRNA-1:cds;Parent=Msa1150290-mRNA-1 |
| chr7_4 | three_prime_UTR | 33507819 | 33508044 | 33507819 | ID=Msa1150290-mRNA-1:three_prime_utr;Parent=Msa1150290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
