AlfalfaGEDB | Msa0294670

M. sativa cultivar zhongmu-4 / Msa0294670

KEGG: -
GO: GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006355 GO:0007049 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009735 GO:0009755 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010941 GO:0016020 GO:0019219 GO:0019222 GO:0019899 GO:0022402 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031625 GO:0031974 GO:0031981 GO:0032870 GO:0032991 GO:0040008 GO:0042221 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044770 GO:0044843 GO:0045595 GO:0045597 GO:0045892 GO:0045934 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051302 GO:0051716 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1990904 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00557.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0294670	XP_013464612.1	93.606	391	5	2	1	371	1	391	0.0	735

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0294670	sp\|M1CZC0\|EBP1_SOLTU	83.944	355	38	2	1	336	1	355	0.0	614

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0294670	A0A072V9Z9	93.606	391	5	2	1	371	1	391	0.0	735

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0294670	Msa0315430	0.809207	2.120415e-50	-8.615850e-47
Msa0294670	Msa1258540	0.803430	3.498884e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0294670	MtrunA17_Chr2g0316491	93.606	391	5	2	1	371	1	391	0.0	735
Msa0294670	MtrunA17_Chr7g0242891	85.876	354	32	1	1	336	1	354	0.0	615
Msa0294670	MtrunA17_Chr1g0206751	24.096	332	214	7	7	312	20	339	1.75e-24	102
Msa0294670	MtrunA17_Chr4g0061151	24.096	332	214	7	7	312	101	420	6.20e-24	102

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0294670	AT3G51800.3	74.359	390	71	4	2	370	3	384	0.0	555
Msa0294670	AT3G51800.1	75.385	390	74	3	2	370	3	391	0.0	541
Msa0294670	AT3G51800.2	73.684	399	74	4	2	370	3	400	0.0	532
Msa0294670	AT2G44180.1	23.926	326	208	8	7	305	117	429	7.48e-24	102
Msa0294670	AT3G59990.4	25.602	332	195	9	7	305	115	427	2.14e-23	101
Msa0294670	AT3G59990.3	25.602	332	195	9	7	305	115	427	2.14e-23	101
Msa0294670	AT3G59990.1	25.602	332	195	9	7	305	115	427	2.14e-23	101
Msa0294670	AT3G59990.2	25.602	332	195	9	7	305	115	427	2.14e-23	101
Msa0294670	AT2G44180.2	24.224	322	204	8	18	312	8	316	2.70e-23	99.4

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Find 107 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGACAAAGAAGAAGGGTGG+TGG	0.541157	2_3:+46700013	Msa0294670:CDS
AAGAGCTCGTCTGGGTTTAG+TGG	0.426828	2_3:+46699698	Msa0294670:CDS
AAGTATACTGCAATGTGACA+TGG	0.592407	2_3:-46700372	None:intergenic
AATTAAGGCCTGGCTAGCAT+TGG	0.474815	2_3:+46699985	Msa0294670:CDS
ACATTCTGACAGATACAACT+AGG	0.621340	2_3:-46700312	None:intergenic
ACGGATGGAGGGCGTGGGTA+GGG	0.454015	2_3:-46694368	None:intergenic
ACGGTCTTGCTAATGCCAAA+TGG	0.511551	2_3:+46699896	Msa0294670:CDS
ACGTGCTGCTGATGTAATTG+CGG	0.676701	2_3:+46695715	Msa0294670:CDS
ACTAGTAAAGCCAGGAAAGA+AGG	0.475594	2_3:+46695769	Msa0294670:CDS
ACTGTTTCGTCGCTGGCGAG+AGG	0.613385	2_3:-46695467	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTGAAGGTTAACGAAATTA+GGG	-	chr2_3:46694439-46694458	None:intergenic	30.0%
AAACCAAACTTCATGCAAAT+GGG	-	chr2_3:46694635-46694654	None:intergenic	30.0%
AAAACCAAACTTCATGCAAA+TGG	-	chr2_3:46694636-46694655	None:intergenic	30.0%
AAATTCATCCAAATGGGTAA+CGG	-	chr2_3:46694722-46694741	None:intergenic	30.0%
AACTTAATCGAAATGGTTCA+TGG	-	chr2_3:46694809-46694828	None:intergenic	30.0%
ATTGTTGACATTTGTGAGAA+AGG	+	chr2_3:46695161-46695180	Msa0294670:CDS	30.0%
TTGTTGACATTTGTGAGAAA+GGG	+	chr2_3:46695162-46695181	Msa0294670:CDS	30.0%
TGTTTACAGATATGCATGTT+GGG	-	chr2_3:46695427-46695446	None:intergenic	30.0%
TTGTTTACAGATATGCATGT+TGG	-	chr2_3:46695428-46695447	None:intergenic	30.0%
ATATGGCATGTCATATAGAT+GGG	+	chr2_3:46695639-46695658	Msa0294670:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	46694347	46700481	46694347	ID=Msa0294670;Name=Msa0294670
chr2_3	mRNA	46694347	46700481	46694347	ID=Msa0294670-mRNA-1;Parent=Msa0294670;Name=Msa0294670-mRNA-1;_AED=0.08;_eAED=0.08;_QI=231\|0.88\|0.8\|1\|1\|1\|10\|221\|371
chr2_3	exon	46694347	46694553	46694347	ID=Msa0294670-mRNA-1:exon:14579;Parent=Msa0294670-mRNA-1
chr2_3	exon	46694866	46694980	46694866	ID=Msa0294670-mRNA-1:exon:14580;Parent=Msa0294670-mRNA-1
chr2_3	exon	46695117	46695201	46695117	ID=Msa0294670-mRNA-1:exon:14581;Parent=Msa0294670-mRNA-1
chr2_3	exon	46695367	46695516	46695367	ID=Msa0294670-mRNA-1:exon:14582;Parent=Msa0294670-mRNA-1
chr2_3	exon	46695637	46695790	46695637	ID=Msa0294670-mRNA-1:exon:14583;Parent=Msa0294670-mRNA-1
chr2_3	exon	46698962	46699177	46698962	ID=Msa0294670-mRNA-1:exon:14584;Parent=Msa0294670-mRNA-1
chr2_3	exon	46699265	46699358	46699265	ID=Msa0294670-mRNA-1:exon:14585;Parent=Msa0294670-mRNA-1
chr2_3	exon	46699694	46699774	46699694	ID=Msa0294670-mRNA-1:exon:14586;Parent=Msa0294670-mRNA-1
chr2_3	exon	46699870	46700049	46699870	ID=Msa0294670-mRNA-1:exon:14587;Parent=Msa0294670-mRNA-1
chr2_3	exon	46700196	46700481	46700196	ID=Msa0294670-mRNA-1:exon:14588;Parent=Msa0294670-mRNA-1
chr2_3	five_prime_UTR	46694347	46694553	46694347	ID=Msa0294670-mRNA-1:five_prime_utr;Parent=Msa0294670-mRNA-1
chr2_3	five_prime_UTR	46694866	46694889	46694866	ID=Msa0294670-mRNA-1:five_prime_utr;Parent=Msa0294670-mRNA-1
chr2_3	CDS	46694890	46694980	46694890	ID=Msa0294670-mRNA-1:cds;Parent=Msa0294670-mRNA-1
chr2_3	CDS	46695117	46695201	46695117	ID=Msa0294670-mRNA-1:cds;Parent=Msa0294670-mRNA-1
chr2_3	CDS	46695367	46695516	46695367	ID=Msa0294670-mRNA-1:cds;Parent=Msa0294670-mRNA-1
chr2_3	CDS	46695637	46695790	46695637	ID=Msa0294670-mRNA-1:cds;Parent=Msa0294670-mRNA-1
chr2_3	CDS	46698962	46699177	46698962	ID=Msa0294670-mRNA-1:cds;Parent=Msa0294670-mRNA-1
chr2_3	CDS	46699265	46699358	46699265	ID=Msa0294670-mRNA-1:cds;Parent=Msa0294670-mRNA-1
chr2_3	CDS	46699694	46699774	46699694	ID=Msa0294670-mRNA-1:cds;Parent=Msa0294670-mRNA-1
chr2_3	CDS	46699870	46700049	46699870	ID=Msa0294670-mRNA-1:cds;Parent=Msa0294670-mRNA-1
chr2_3	CDS	46700196	46700260	46700196	ID=Msa0294670-mRNA-1:cds;Parent=Msa0294670-mRNA-1
chr2_3	three_prime_UTR	46700261	46700481	46700261	ID=Msa0294670-mRNA-1:three_prime_utr;Parent=Msa0294670-mRNA-1

Gene Sequence

>Msa0294670

ATGTCAGATGATGAGAGGGATGAGAAGGAGTTGGATCTCACTTCTCCTGATGTTGTAACCAAGTACAAGAGTGCAGCAGAAATCGTTAACAAGGCATTGCAGTTGGTTATTTCAGAATGCAAACCAAATGTTAAGATTGTTGACATTTGTGAGAAAGGGGATTCGTTTATTAGAGAGCAAACTGGTAAATTGTACAAGAATGTGAAGAAGAAGATTGAAAGAGGTGTTGCTTTCCCAACATGCATATCTGTAAACAACACTGTCTGCCATTTCTCTCCTCTCGCCAGCGACGAAACAGTGTTGGAAGTAGGTGATATATTGAAAATTGATATGGCATGTCATATAGATGGGTTCATTGCTGCTGTGGCTCACACTCATGTTCTTCGGGAGGGACCAGTCACGGGACGTGCTGCTGATGTAATTGCGGCGGCAAACACTGCTGCTGAAGTGGCCTTGAGACTAGTAAAGCCAGGAAAGAAGAACCAAGATGTAACTGATGCAATTCAGAAGGTCGCTGCTGCCTATGATTGTAGAATTGTTGAGGGTGTTCTTAGCCACCAAATGAAGCAGTTTGTGATTGATGCAAATAAGGTTGTGCTAAGTGTATCTAATCCGGATACAAGGGTTGATGATGCAGAATTCGAAGAGAATGAAGTTTATGCTATTGATATTGTAGCCAGTACTGGAGAAGGCAAGCCTAAGCTGTTGGATGAGAAGCAGACAACTATTTATAAGAGGGCTGTTGACAGAAGTTATAACTTGAAGATGAAAGCATCGAGATTTATTTACAAAAAAAGAGCTCGTCTGGGTTTAGTGGAATGCATGAATCACGAGCTTCTGCAGCCTTATCCTGTTCTACATGAAAAGCCTGGTGATTATGTTGCCCACATCAAATTCACGGTCTTGCTAATGCCAAATGGATCAGACCGTATCACATCTCACCCACTCCAGGAAATCCAGCCTACTAAAACAGTAGATGATCTTGAAATTAAGGCCTGGCTAGCATTGGGTGTAAAGACAAAGAAGAAGGGTGGTGGAAAGAAGAAGAAAGGTAAGAAGGGGGCTGAAGGTGAAGCTGAAGCTGAAGCTGATGCCTCAACCCAAGAGCAAAATTGA

Protein sequence

>Msa0294670

MSDDERDEKELDLTSPDVVTKYKSAAEIVNKALQLVISECKPNVKIVDICEKGDSFIREQTGKLYKNVKKKIERGVAFPTCISVNNTVCHFSPLASDETVLEVGDILKIDMACHIDGFIAAVAHTHVLREGPVTGRAADVIAAANTAAEVALRLVKPGKKNQDVTDAIQKVAAAYDCRIVEGVLSHQMKQFVIDANKVVLSVSNPDTRVDDAEFEENEVYAIDIVASTGEGKPKLLDEKQTTIYKRAVDRSYNLKMKASRFIYKKRARLGLVECMNHELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRITSHPLQEIQPTKTVDDLEIKAWLALGVKTKKKGGGKKKKGKKGAEGEAEAEADASTQEQN*