AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0294670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0294670 MtrunA17_Chr2g0316491 93.606 391 5 2 1 371 1 391 0.0 735
Msa0294670 MtrunA17_Chr7g0242891 85.876 354 32 1 1 336 1 354 0.0 615
Msa0294670 MtrunA17_Chr1g0206751 24.096 332 214 7 7 312 20 339 1.75e-24 102
Msa0294670 MtrunA17_Chr4g0061151 24.096 332 214 7 7 312 101 420 6.20e-24 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0294670 AT3G51800.3 74.359 390 71 4 2 370 3 384 0.0 555
Msa0294670 AT3G51800.1 75.385 390 74 3 2 370 3 391 0.0 541
Msa0294670 AT3G51800.2 73.684 399 74 4 2 370 3 400 0.0 532
Msa0294670 AT2G44180.1 23.926 326 208 8 7 305 117 429 7.48e-24 102
Msa0294670 AT3G59990.4 25.602 332 195 9 7 305 115 427 2.14e-23 101
Msa0294670 AT3G59990.3 25.602 332 195 9 7 305 115 427 2.14e-23 101
Msa0294670 AT3G59990.1 25.602 332 195 9 7 305 115 427 2.14e-23 101
Msa0294670 AT3G59990.2 25.602 332 195 9 7 305 115 427 2.14e-23 101
Msa0294670 AT2G44180.2 24.224 322 204 8 18 312 8 316 2.70e-23 99.4

Find 107 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTGAAGGTTAACGAAATT+AGG 0.230507 2_3:-46694437 None:intergenic
AGTAGATGATCTTGAAATTA+AGG 0.274125 2_3:+46699970 Msa0294670:CDS
CATATGATTACCTTCTTTCC+TGG 0.300435 2_3:-46695779 None:intergenic
GTTTGTGATTGATGCAAATA+AGG 0.340517 2_3:+46699051 Msa0294670:CDS
TGTGAAGGTTAACGAAATTA+GGG 0.344286 2_3:-46694436 None:intergenic
CATCATCTGACATGGTGAAT+TGG 0.346272 2_3:-46694880 None:intergenic
TGGCTCACACTCATGTTCTT+CGG 0.354322 2_3:+46695675 Msa0294670:CDS
GATATGGCATGTCATATAGA+TGG 0.362506 2_3:+46695638 Msa0294670:CDS
TTCTGCTGCACTCTTGTACT+TGG 0.365021 2_3:-46694948 None:intergenic
GGCTCACACTCATGTTCTTC+GGG 0.375887 2_3:+46695676 Msa0294670:CDS
TTGTTGACATTTGTGAGAAA+GGG 0.380554 2_3:+46695162 Msa0294670:CDS
ATGTCAACAATCTTAACATT+TGG 0.394345 2_3:-46695149 None:intergenic
ATTGTTGACATTTGTGAGAA+AGG 0.397061 2_3:+46695161 Msa0294670:CDS
CAATCACAAACTGCTTCATT+TGG 0.402648 2_3:-46699039 None:intergenic
TCCTTTGCAGCCTAAGCTGT+TGG 0.419373 2_3:+46699255 Msa0294670:intron
CTTTACACCCAATGCTAGCC+AGG 0.423414 2_3:-46699993 None:intergenic
AAGAGCTCGTCTGGGTTTAG+TGG 0.426828 2_3:+46699698 Msa0294670:CDS
GAATTGCATCAGTTACATCT+TGG 0.434972 2_3:-46698964 None:intergenic
GCATCATCAACCCTTGTATC+CGG 0.435555 2_3:-46699094 None:intergenic
TGGATAATTCCCGACATTGT+AGG 0.435789 2_3:-46700352 None:intergenic
CTTTACACGGATGGAGGGCG+TGG 0.436883 2_3:-46694374 None:intergenic
CGCTGCTGTCTTTACACGGA+TGG 0.439656 2_3:-46694383 None:intergenic
TTGTACTTGGTTACAACATC+AGG 0.447279 2_3:-46694935 None:intergenic
AGCAGACAACTATTTATAAG+AGG 0.448471 2_3:+46699284 Msa0294670:CDS
CTCAACAATTCTACAATCAT+AGG 0.452313 2_3:-46699002 None:intergenic
CATAGCATTCCTACAATGTC+GGG 0.452315 2_3:+46700343 Msa0294670:three_prime_UTR
ATTGATATTGTAGCCAGTAC+TGG 0.453453 2_3:+46699145 Msa0294670:CDS
TTCCAACACTGTTTCGTCGC+TGG 0.453763 2_3:-46695474 None:intergenic
ACGGATGGAGGGCGTGGGTA+GGG 0.454015 2_3:-46694368 None:intergenic
TACCTTGCCTTCTCCAGTAC+TGG 0.454879 2_3:-46699158 None:intergenic
GTGTATCTAATCCGGATACA+AGG 0.466817 2_3:+46699083 Msa0294670:CDS
TCTTACGCCGATTATTTCAC+TGG 0.468673 2_3:+46694501 Msa0294670:five_prime_UTR
GTGAAATAATCGGCGTAAGA+AGG 0.471280 2_3:-46694498 None:intergenic
TCCTGGCTTTACTAGTCTCA+AGG 0.471316 2_3:-46695762 None:intergenic
GTGATACGGTCTGATCCATT+TGG 0.471335 2_3:-46699911 None:intergenic
AATTAAGGCCTGGCTAGCAT+TGG 0.474815 2_3:+46699985 Msa0294670:CDS
ACTAGTAAAGCCAGGAAAGA+AGG 0.475594 2_3:+46695769 Msa0294670:CDS
AGATGATGAGAGGGATGAGA+AGG 0.478999 2_3:+46694895 Msa0294670:CDS
TGAGAGGGATGAGAAGGAGT+TGG 0.485440 2_3:+46694901 Msa0294670:CDS
CGAAGAACCAGTGAAATAAT+CGG 0.486105 2_3:-46694508 None:intergenic
TGTGCTAAGTGTATCTAATC+CGG 0.486430 2_3:+46699075 Msa0294670:CDS
CACGGATGGAGGGCGTGGGT+AGG 0.487825 2_3:-46694369 None:intergenic
GGCAAACACTGCTGCTGAAG+TGG 0.488119 2_3:+46695739 Msa0294670:CDS
AGCGGTTTATATAGAGAGAG+AGG 0.490677 2_3:-46694411 None:intergenic
TCACAAACTGCTTCATTTGG+TGG 0.490912 2_3:-46699036 None:intergenic
AGCAGTGTTACTCACCTTGT+AGG 0.491930 2_3:-46694546 None:intergenic
GTGAAGAAGAAGATTGAAAG+AGG 0.500921 2_3:+46695392 Msa0294670:CDS
GTTAACGAAATTAGGGTTAG+CGG 0.502652 2_3:-46694429 None:intergenic
TGTTGCCCACATCAAATTCA+CGG 0.503299 2_3:+46699877 Msa0294670:CDS
TGTTTACAGATATGCATGTT+GGG 0.506711 2_3:-46695424 None:intergenic
GCAGTGTTACTCACCTTGTA+GGG 0.506982 2_3:-46694545 None:intergenic
CAATCAATCAAAACCCTACA+AGG 0.508525 2_3:+46694532 Msa0294670:five_prime_UTR
ATTAAGGCCTGGCTAGCATT+GGG 0.509909 2_3:+46699986 Msa0294670:CDS
CGCTGGCGAGAGGAGAGAAA+TGG 0.510154 2_3:-46695457 None:intergenic
ACGGTCTTGCTAATGCCAAA+TGG 0.511551 2_3:+46699896 Msa0294670:CDS
TCAGCAGCACGTCCCGTGAC+TGG 0.514621 2_3:-46695704 None:intergenic
TGCTGTCTTTACACGGATGG+AGG 0.523236 2_3:-46694380 None:intergenic
TAGGCTGGATTTCCTGGAGT+GGG 0.524707 2_3:-46699940 None:intergenic
CTTCGGGAGGGACCAGTCAC+GGG 0.525056 2_3:+46695692 Msa0294670:CDS
TGTTGACATTTGTGAGAAAG+GGG 0.525762 2_3:+46695163 Msa0294670:CDS
GGGTGTAAAGACAAAGAAGA+AGG 0.528540 2_3:+46700006 Msa0294670:CDS
GGTGGTGGAAAGAAGAAGAA+AGG 0.529193 2_3:+46700028 Msa0294670:CDS
GCATAGCATTCCTACAATGT+CGG 0.536342 2_3:+46700342 Msa0294670:three_prime_UTR
CGCCAGCGACGAAACAGTGT+TGG 0.538905 2_3:+46695472 Msa0294670:CDS
AAGACAAAGAAGAAGGGTGG+TGG 0.541157 2_3:+46700013 Msa0294670:CDS
TTGAACAGAGGCATTGCAGT+TGG 0.543438 2_3:+46695109 Msa0294670:intron
TATGATTGTAGAATTGTTGA+GGG 0.544071 2_3:+46699004 Msa0294670:CDS
ATAATCGGCGTAAGAAGGAA+AGG 0.550880 2_3:-46694493 None:intergenic
TTGTCGCTGCTGTCTTTACA+CGG 0.554578 2_3:-46694387 None:intergenic
GCCTTGAGACTAGTAAAGCC+AGG 0.555483 2_3:+46695761 Msa0294670:CDS
GAGTGGCTAAGTAGCTGTGA+AGG 0.559922 2_3:-46694451 None:intergenic
CCTGTTCTACATGAAAAGCC+TGG 0.563718 2_3:+46699753 Msa0294670:CDS
TATCACATCTCACCCACTCC+AGG 0.563958 2_3:+46699928 Msa0294670:CDS
ATGATCTTGAAATTAAGGCC+TGG 0.565869 2_3:+46699975 Msa0294670:CDS
ATATGGCATGTCATATAGAT+GGG 0.567592 2_3:+46695639 Msa0294670:CDS
TGCTTCTCATCCAACAGCTT+AGG 0.569463 2_3:-46699265 None:intergenic
AGCCAGTACTGGAGAAGGCA+AGG 0.570849 2_3:+46699156 Msa0294670:CDS
AGATGGGTTCATTGCTGCTG+TGG 0.571546 2_3:+46695655 Msa0294670:CDS
CACCATGTCAGATGATGAGA+GGG 0.573122 2_3:+46694886 Msa0294670:exon
GCAAGACCGTGAATTTGATG+TGG 0.574938 2_3:-46699883 None:intergenic
TCTTCGGGAGGGACCAGTCA+CGG 0.584211 2_3:+46695691 Msa0294670:CDS
CACACTCATGTTCTTCGGGA+GGG 0.586336 2_3:+46695680 Msa0294670:CDS
CAAGACCGTGAATTTGATGT+GGG 0.588646 2_3:-46699882 None:intergenic
TCACACTCATGTTCTTCGGG+AGG 0.589290 2_3:+46695679 Msa0294670:CDS
GCAGACAACTATTTATAAGA+GGG 0.589806 2_3:+46699285 Msa0294670:CDS
CTATGATTGTAGAATTGTTG+AGG 0.589941 2_3:+46699003 Msa0294670:CDS
GTAGGCTGGATTTCCTGGAG+TGG 0.590274 2_3:-46699941 None:intergenic
AAGTATACTGCAATGTGACA+TGG 0.592407 2_3:-46700372 None:intergenic
ATTGTAGCCAGTACTGGAGA+AGG 0.596791 2_3:+46699151 Msa0294670:CDS
TAATCGGCGTAAGAAGGAAA+GGG 0.600811 2_3:-46694492 None:intergenic
TGTATCTAATCCGGATACAA+GGG 0.601162 2_3:+46699084 Msa0294670:CDS
TGAGACGAAAGTTGAGAGAG+TGG 0.603026 2_3:-46694468 None:intergenic
ATCCCTCTCATCATCTGACA+TGG 0.603277 2_3:-46694888 None:intergenic
GCTGTCTTTACACGGATGGA+GGG 0.604590 2_3:-46694379 None:intergenic
CAAAAGTGTCTGTTCTGCTG+TGG 0.606738 2_3:+46700419 Msa0294670:three_prime_UTR
TGTAACTGATGCAATTCAGA+AGG 0.607645 2_3:+46698970 Msa0294670:CDS
TCACCATGTCAGATGATGAG+AGG 0.607690 2_3:+46694885 Msa0294670:exon
TTGTTTACAGATATGCATGT+TGG 0.607733 2_3:-46695425 None:intergenic
ACTGTTTCGTCGCTGGCGAG+AGG 0.613385 2_3:-46695467 None:intergenic
TTTACACGGATGGAGGGCGT+GGG 0.617873 2_3:-46694373 None:intergenic
GGTGTAAAGACAAAGAAGAA+GGG 0.619662 2_3:+46700007 Msa0294670:CDS
ACATTCTGACAGATACAACT+AGG 0.621340 2_3:-46700312 None:intergenic
GACGAAACAGTGTTGGAAGT+AGG 0.622202 2_3:+46695479 Msa0294670:CDS
GGAGTGGGTGAGATGTGATA+CGG 0.631891 2_3:-46699925 None:intergenic
TGCTGCTGATGTAATTGCGG+CGG 0.648566 2_3:+46695718 Msa0294670:CDS
GTAAAGACAAAGAAGAAGGG+TGG 0.661594 2_3:+46700010 Msa0294670:CDS
ACGTGCTGCTGATGTAATTG+CGG 0.676701 2_3:+46695715 Msa0294670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAGAATTATGTATTATTT+CGG - chr2_3:46697442-46697461 None:intergenic 10.0%
!! ATGGATTTATTAAATTAAAT+GGG + chr2_3:46697468-46697487 Msa0294670:intron 10.0%
!!! AATAATTAATTTGAACAATA+TGG - chr2_3:46698714-46698733 None:intergenic 10.0%
!!! TTTTATCTAACATTTTTTTA+AGG - chr2_3:46698863-46698882 None:intergenic 10.0%
!!! TTTTAATTTTGTTTTTAAGT+AGG + chr2_3:46698910-46698929 Msa0294670:intron 10.0%
!!! AGCTTTAAAAAAATATAATT+CGG + chr2_3:46700079-46700098 Msa0294670:intron 10.0%
!! ATGACTTAAAAAAATATACA+GGG - chr2_3:46694995-46695014 None:intergenic 15.0%
!! AATGACTTAAAAAAATATAC+AGG - chr2_3:46694996-46695015 None:intergenic 15.0%
!!! GTAAGATTTTTGTTTAATTA+TGG + chr2_3:46695202-46695221 Msa0294670:intron 15.0%
!!! TGATTTATTGTTTTTGTTAT+GGG + chr2_3:46695273-46695292 Msa0294670:intron 15.0%
!!! ATTTTTAAATTTTGATGAAC+TGG + chr2_3:46696299-46696318 Msa0294670:intron 15.0%
!! TCAATTTGTAAATTATAAAC+TGG + chr2_3:46697170-46697189 Msa0294670:intron 15.0%
!! CAATTTGTAAATTATAAACT+GGG + chr2_3:46697171-46697190 Msa0294670:intron 15.0%
!! AATTAATGAATAACTCAAAA+AGG - chr2_3:46697251-46697270 None:intergenic 15.0%
!!! CATTTAATTTAATAAATCCA+TGG - chr2_3:46697469-46697488 None:intergenic 15.0%
!! CATGGATTTATTAAATTAAA+TGG + chr2_3:46697467-46697486 Msa0294670:intron 15.0%
!! TAAATTAAATGGGATAATAT+AGG + chr2_3:46697478-46697497 Msa0294670:intron 15.0%
!! GTAGTTATAATAGTTATATT+TGG + chr2_3:46697509-46697528 Msa0294670:intron 15.0%
!!! ATTAACAACTTTTTACATAT+AGG - chr2_3:46697546-46697565 None:intergenic 15.0%
!! AATTTGTGAATTCATTAAAT+GGG + chr2_3:46697712-46697731 Msa0294670:intron 15.0%
!! GAATATATATTGTATAATGT+TGG - chr2_3:46698213-46698232 None:intergenic 15.0%
!! ATTAAATTGTTGTATTATGT+TGG - chr2_3:46698405-46698424 None:intergenic 15.0%
!! TAAAATTTGTAATTGAATGT+TGG + chr2_3:46698878-46698897 Msa0294670:intron 15.0%
!! AAAAATGTAACAAAATTGAA+AGG - chr2_3:46700290-46700309 None:intergenic 15.0%
!! AAACAAAAATTCATCCAAAT+GGG - chr2_3:46694728-46694747 None:intergenic 20.0%
!! AAAACAAAAATTCATCCAAA+TGG - chr2_3:46694729-46694748 None:intergenic 20.0%
!! AAATCAAAACTTAATCGAAA+TGG - chr2_3:46694816-46694835 None:intergenic 20.0%
!!! TTCGATTAAGTTTTGATTTT+TGG + chr2_3:46694817-46694836 Msa0294670:intron 20.0%
!! TGACTTAAAAAAATATACAG+GGG - chr2_3:46694994-46695013 None:intergenic 20.0%
!!! TCATTTTTTGTTGTTGAATT+TGG + chr2_3:46695011-46695030 Msa0294670:intron 20.0%
!!! ATTTGGTTCATAATTTTGTT+TGG + chr2_3:46695028-46695047 Msa0294670:intron 20.0%
!! TCAAATTAAGAAAAATGTTG+TGG - chr2_3:46695067-46695086 None:intergenic 20.0%
!!! TTTGTTATTATTCATTTGCT+AGG + chr2_3:46695242-46695261 Msa0294670:intron 20.0%
!!! GTGATTTATTGTTTTTGTTA+TGG + chr2_3:46695272-46695291 Msa0294670:intron 20.0%
!!! TTTTGTTTTTTACAGTGATA+TGG + chr2_3:46695622-46695641 Msa0294670:intron 20.0%
!!! ATTACAAGACATTTTGAATT+TGG + chr2_3:46695818-46695837 Msa0294670:intron 20.0%
!! ACCATTATATTGTGTTAATT+AGG + chr2_3:46696499-46696518 Msa0294670:intron 20.0%
!! ACCTAATTAACACAATATAA+TGG - chr2_3:46696503-46696522 None:intergenic 20.0%
!!! GACAACTTGAATAAATTTTT+CGG - chr2_3:46696973-46696992 None:intergenic 20.0%
!!! ATTTATTCAAGTTGTCATAT+TGG + chr2_3:46696977-46696996 Msa0294670:intron 20.0%
!!! ATGGTTTTATTCAAAAAACA+GGG - chr2_3:46697017-46697036 None:intergenic 20.0%
!!! AATGGTTTTATTCAAAAAAC+AGG - chr2_3:46697018-46697037 None:intergenic 20.0%
!! AAAAGTAAAAACAATTGCAA+TGG - chr2_3:46697036-46697055 None:intergenic 20.0%
!! CAATTTGTGAATTCATTAAA+TGG + chr2_3:46697711-46697730 Msa0294670:intron 20.0%
!! TTCATTAAATGGGATAAAAT+AGG + chr2_3:46697722-46697741 Msa0294670:intron 20.0%
!! TCATTAAATGGGATAAAATA+GGG + chr2_3:46697723-46697742 Msa0294670:intron 20.0%
!! GAATTCATTAAGGATAATAT+AGG + chr2_3:46697998-46698017 Msa0294670:intron 20.0%
!! ACAATATATATTCCAATCAA+TGG + chr2_3:46698220-46698239 Msa0294670:intron 20.0%
!! TAGTTGTGTTAATTTACATT+TGG + chr2_3:46698547-46698566 Msa0294670:intron 20.0%
!!! TAATTTTGTTTTTAAGTAGG+TGG + chr2_3:46698913-46698932 Msa0294670:intron 20.0%
!! TACATAAACACTTACAATAT+AGG + chr2_3:46699473-46699492 Msa0294670:intron 20.0%
! ACCAAAAAATTCATCCAAAT+GGG - chr2_3:46694684-46694703 None:intergenic 25.0%
! AACCAAAAAATTCATCCAAA+TGG - chr2_3:46694685-46694704 None:intergenic 25.0%
! AATCAAAACTTCATCCAAAT+GGG - chr2_3:46694772-46694791 None:intergenic 25.0%
! AAATCAAAACTTCATCCAAA+TGG - chr2_3:46694773-46694792 None:intergenic 25.0%
!!! TTTTTGGTATTTGTTTCTTC+TGG + chr2_3:46694833-46694852 Msa0294670:intron 25.0%
!!! TTTTGGTATTTGTTTCTTCT+GGG + chr2_3:46694834-46694853 Msa0294670:intron 25.0%
!!! ATTTGTTTTGAATTGAACAG+AGG + chr2_3:46695097-46695116 Msa0294670:intron 25.0%
! ATGTCAACAATCTTAACATT+TGG - chr2_3:46695152-46695171 None:intergenic 25.0%
!!! TTTTCTGTGTTTTTTTGTTG+TGG + chr2_3:46695310-46695329 Msa0294670:intron 25.0%
! TAGACTGGATTCAAATTTAA+AGG - chr2_3:46695862-46695881 None:intergenic 25.0%
! TTTGACAAAACATCATTTGA+TGG - chr2_3:46695958-46695977 None:intergenic 25.0%
! ATGTAAAATATCACAAGCTA+TGG + chr2_3:46696040-46696059 Msa0294670:intron 25.0%
! ACTAAGAAACATAAATCAAC+AGG - chr2_3:46696144-46696163 None:intergenic 25.0%
! TTTATGTTTCTTAGTTTACC+TGG + chr2_3:46696149-46696168 Msa0294670:intron 25.0%
! TTATGTTTCTTAGTTTACCT+GGG + chr2_3:46696150-46696169 Msa0294670:intron 25.0%
! CTATAACGTATTTCATCATA+CGG - chr2_3:46696328-46696347 None:intergenic 25.0%
! GTGTAACTATGACAAAAAAA+AGG - chr2_3:46696374-46696393 None:intergenic 25.0%
! GGAAATAAACACAATCAATT+TGG + chr2_3:46696460-46696479 Msa0294670:intron 25.0%
!!! TAGAAAGTGTTTCATCATTA+GGG - chr2_3:46696808-46696827 None:intergenic 25.0%
!!! TTAGAAAGTGTTTCATCATT+AGG - chr2_3:46696809-46696828 None:intergenic 25.0%
!!! AACTTGAATAAATTTTTCGG+AGG - chr2_3:46696970-46696989 None:intergenic 25.0%
! CAATACAAATTTAGACAACA+GGG - chr2_3:46697363-46697382 None:intergenic 25.0%
! ACATAATTCTAATCAATCCA+TGG + chr2_3:46697449-46697468 Msa0294670:intron 25.0%
!!! AAGTGTACTGACTATAAAAT+CGG - chr2_3:46697657-46697676 None:intergenic 25.0%
! ATCAATCTGTGAATTCATTA+AGG + chr2_3:46697988-46698007 Msa0294670:intron 25.0%
! ATAATATAGGACTTCATAGT+AGG + chr2_3:46698011-46698030 Msa0294670:intron 25.0%
! AAATGATTATGAGATTCCAA+GGG - chr2_3:46698047-46698066 None:intergenic 25.0%
! AAAATGATTATGAGATTCCA+AGG - chr2_3:46698048-46698067 None:intergenic 25.0%
! CAATACAAATTTAGACAACA+GGG - chr2_3:46697363-46697382 None:intergenic 25.0%
! GTGTGATAAAATTGTAGAAA+TGG + chr2_3:46698255-46698274 Msa0294670:intron 25.0%
!!! TTTGTGTTGATTTTATAGTC+AGG + chr2_3:46698362-46698381 Msa0294670:intron 25.0%
! TTTCTGCCAAATCTTAATTT+AGG - chr2_3:46698516-46698535 None:intergenic 25.0%
! TGTTTAAACAACTTCTATTC+TGG + chr2_3:46698817-46698836 Msa0294670:intron 25.0%
! TATGATTGTAGAATTGTTGA+GGG + chr2_3:46699004-46699023 Msa0294670:CDS 25.0%
! AAGTAAATAAGATCTCAAAC+AGG - chr2_3:46699417-46699436 None:intergenic 25.0%
!! GTTTGAGATCTTATTTACTT+TGG + chr2_3:46699417-46699436 Msa0294670:intron 25.0%
!! TGTGACACTATTTTCAAATA+AGG - chr2_3:46699583-46699602 None:intergenic 25.0%
! ATTAACAGCATTTGTCTAAA+TGG + chr2_3:46699639-46699658 Msa0294670:intron 25.0%
! TTGTTTGTTCCTTTATACTA+GGG + chr2_3:46699662-46699681 Msa0294670:intron 25.0%
! AAAAACAAGCAACAATGTAA+AGG - chr2_3:46699847-46699866 None:intergenic 25.0%
! AGTAGATGATCTTGAAATTA+AGG + chr2_3:46699970-46699989 Msa0294670:CDS 25.0%
! ATTCAACAATTAAGCATTTG+TGG - chr2_3:46700143-46700162 None:intergenic 25.0%
! ACAAATGCTTAATTGTTGAA+TGG + chr2_3:46700142-46700161 Msa0294670:intron 25.0%
TGTGAAGGTTAACGAAATTA+GGG - chr2_3:46694439-46694458 None:intergenic 30.0%
AAACCAAACTTCATGCAAAT+GGG - chr2_3:46694635-46694654 None:intergenic 30.0%
AAAACCAAACTTCATGCAAA+TGG - chr2_3:46694636-46694655 None:intergenic 30.0%
!!! TTTGCATGAAGTTTGGTTTT+TGG + chr2_3:46694636-46694655 Msa0294670:intron 30.0%
!!! ACCCATTTGGATGAATTTTT+TGG + chr2_3:46694680-46694699 Msa0294670:intron 30.0%
AAATTCATCCAAATGGGTAA+CGG - chr2_3:46694722-46694741 None:intergenic 30.0%
AACTTAATCGAAATGGTTCA+TGG - chr2_3:46694809-46694828 None:intergenic 30.0%
! TTGTTACAGGAGATTTTCAT+AGG + chr2_3:46694857-46694876 Msa0294670:intron 30.0%
ATTGTTGACATTTGTGAGAA+AGG + chr2_3:46695161-46695180 Msa0294670:CDS 30.0%
TTGTTGACATTTGTGAGAAA+GGG + chr2_3:46695162-46695181 Msa0294670:CDS 30.0%
!!! TTTGTTGTGGTTTTAGCTTA+TGG + chr2_3:46695323-46695342 Msa0294670:intron 30.0%
!!! TTGTTGTGGTTTTAGCTTAT+GGG + chr2_3:46695324-46695343 Msa0294670:intron 30.0%
TGTTTACAGATATGCATGTT+GGG - chr2_3:46695427-46695446 None:intergenic 30.0%
TTGTTTACAGATATGCATGT+TGG - chr2_3:46695428-46695447 None:intergenic 30.0%
!! GATGGATTTTGTGTATGTTT+TGG + chr2_3:46695568-46695587 Msa0294670:intron 30.0%
ATATGGCATGTCATATAGAT+GGG + chr2_3:46695639-46695658 Msa0294670:CDS 30.0%
TTGAATCCAGTCTAATTAGA+TGG + chr2_3:46695868-46695887 Msa0294670:intron 30.0%
TGAATCCAGTCTAATTAGAT+GGG + chr2_3:46695869-46695888 Msa0294670:intron 30.0%
ACTATGACTATAAAGCTTCA+CGG - chr2_3:46696074-46696093 None:intergenic 30.0%
AACAGGAAAACTCGTTATAA+TGG - chr2_3:46696127-46696146 None:intergenic 30.0%
!!! ACAATGAATGGTTTTAGTCA+TGG + chr2_3:46696209-46696228 Msa0294670:intron 30.0%
CAAAAGTGAAAGAAACGTAA+TGG - chr2_3:46696242-46696261 None:intergenic 30.0%
! CATTACGTTTCTTTCACTTT+TGG + chr2_3:46696240-46696259 Msa0294670:intron 30.0%
CGTATGATGAAATACGTTAT+AGG + chr2_3:46696326-46696345 Msa0294670:intron 30.0%
ATGAAATACGTTATAGGCTA+TGG + chr2_3:46696332-46696351 Msa0294670:intron 30.0%
TGACAAAAAAAAGGCTTCAT+CGG - chr2_3:46696365-46696384 None:intergenic 30.0%
! TTTTGTCATAGTTACACTGA+TGG + chr2_3:46696377-46696396 Msa0294670:intron 30.0%
! ATGAAAATTTGGAATTCCAC+TGG - chr2_3:46696533-46696552 None:intergenic 30.0%
! AGTGGAATTCCAAATTTTCA+TGG + chr2_3:46696532-46696551 Msa0294670:intron 30.0%
! GTGGAATTCCAAATTTTCAT+GGG + chr2_3:46696533-46696552 Msa0294670:intron 30.0%
! TTCCAAATTTTCATGGGATA+TGG + chr2_3:46696539-46696558 Msa0294670:intron 30.0%
AACCATATCCCATGAAAATT+TGG - chr2_3:46696544-46696563 None:intergenic 30.0%
AGAATCCTAATAACGTGTTA+GGG - chr2_3:46696568-46696587 None:intergenic 30.0%
TAGAATCCTAATAACGTGTT+AGG - chr2_3:46696569-46696588 None:intergenic 30.0%
! CTTTTCATGTTCTCTGTATT+TGG - chr2_3:46696750-46696769 None:intergenic 30.0%
! GAAACACTTTCTAAAAGCTA+CGG + chr2_3:46696815-46696834 Msa0294670:intron 30.0%
CTATGACATAAAGCTTCATT+TGG - chr2_3:46696849-46696868 None:intergenic 30.0%
TATGTCATAGTTACTCTGAT+AGG + chr2_3:46696859-46696878 Msa0294670:intron 30.0%
ATGTCATAGTTACTCTGATA+GGG + chr2_3:46696860-46696879 Msa0294670:intron 30.0%
GATATAGAATTACTTCTGCT+TGG + chr2_3:46697085-46697104 Msa0294670:intron 30.0%
ATTATAAACTGGGACAACAT+AGG + chr2_3:46697181-46697200 Msa0294670:intron 30.0%
CCAATACAAATTTAGACAAC+AGG - chr2_3:46697364-46697383 None:intergenic 30.0%
CCTGTTGTCTAAATTTGTAT+TGG + chr2_3:46697361-46697380 Msa0294670:intron 30.0%
!!! TGTTGCGCTGATTTTATATT+CGG + chr2_3:46697398-46697417 Msa0294670:intron 30.0%
CCAATACAATTTAGACAACA+GGG - chr2_3:46697615-46697634 None:intergenic 30.0%
!! TGTCTAAATTGTATTGGCTT+TGG + chr2_3:46697618-46697637 Msa0294670:intron 30.0%
TAAAATAGGGACTTCATAGT+AGG + chr2_3:46697736-46697755 Msa0294670:intron 30.0%
CCAATACAAATTTAGACAAC+AGG - chr2_3:46697364-46697383 None:intergenic 30.0%
CCTGTTGTCTAAATTTGTAT+TGG + chr2_3:46697361-46697380 Msa0294670:intron 30.0%
TGTGTGTTAAATTTGCAGAA+TGG + chr2_3:46698438-46698457 Msa0294670:intron 30.0%
CTGTTGCCTAAATTAAGATT+TGG + chr2_3:46698507-46698526 Msa0294670:intron 30.0%
! CTTATACATTGCACTTGTTA+AGG + chr2_3:46698590-46698609 Msa0294670:intron 30.0%
! GTTGTCTTTTTGTCTATTGT+AGG + chr2_3:46698673-46698692 Msa0294670:intron 30.0%
TTATTACTCATAAACGACCT+TGG + chr2_3:46698729-46698748 Msa0294670:intron 30.0%
CTCAACAATTCTACAATCAT+AGG - chr2_3:46699005-46699024 None:intergenic 30.0%
CTATGATTGTAGAATTGTTG+AGG + chr2_3:46699003-46699022 Msa0294670:CDS 30.0%
GTTTGTGATTGATGCAAATA+AGG + chr2_3:46699051-46699070 Msa0294670:CDS 30.0%
AGCAGACAACTATTTATAAG+AGG + chr2_3:46699284-46699303 Msa0294670:CDS 30.0%
GCAGACAACTATTTATAAGA+GGG + chr2_3:46699285-46699304 Msa0294670:CDS 30.0%
TAGACAAATGCTGTTAATGA+TGG - chr2_3:46699637-46699656 None:intergenic 30.0%
GTTGTTTGTTCCTTTATACT+AGG + chr2_3:46699661-46699680 Msa0294670:intron 30.0%
! TTTTCATGTAGAACAGGATA+AGG - chr2_3:46699750-46699769 None:intergenic 30.0%
GCAGCATAAATAATATTACC+AGG - chr2_3:46699774-46699793 None:intergenic 30.0%
!! TACATTGTTGCTTGTTTTTC+AGG + chr2_3:46699848-46699867 Msa0294670:intron 30.0%
!!! AGATCATCTACTGTTTTAGT+AGG - chr2_3:46699962-46699981 None:intergenic 30.0%
ATGCTTAATTGTTGAATGGT+TGG + chr2_3:46700146-46700165 Msa0294670:intron 30.0%
!!! AAATGCTTGGTTTTTTATGC+AGG + chr2_3:46700174-46700193 Msa0294670:intron 30.0%
!!! GTTTTTTATGCAGGTAAGAA+GGG + chr2_3:46700183-46700202 Msa0294670:intron 30.0%
!!! TTTTTTATGCAGGTAAGAAG+GGG + chr2_3:46700184-46700203 Msa0294670:intron 30.0%
GTTAACGAAATTAGGGTTAG+CGG - chr2_3:46694432-46694451 None:intergenic 35.0%
CTGTGAAGGTTAACGAAATT+AGG - chr2_3:46694440-46694459 None:intergenic 35.0%
CGAAGAACCAGTGAAATAAT+CGG - chr2_3:46694511-46694530 None:intergenic 35.0%
CAATCAATCAAAACCCTACA+AGG + chr2_3:46694532-46694551 Msa0294670:five_prime_UTR 35.0%
AAATTCATCCAAATGGGTCA+CGG - chr2_3:46694678-46694697 None:intergenic 35.0%
TTGTACTTGGTTACAACATC+AGG - chr2_3:46694938-46694957 None:intergenic 35.0%
TGTTGACATTTGTGAGAAAG+GGG + chr2_3:46695163-46695182 Msa0294670:CDS 35.0%
!!! TGTTGTGGTTTTAGCTTATG+GGG + chr2_3:46695325-46695344 Msa0294670:intron 35.0%
! TGTGTTTTGTAAAGGCAAAC+TGG + chr2_3:46695353-46695372 Msa0294670:intron 35.0%
GTGAAGAAGAAGATTGAAAG+AGG + chr2_3:46695392-46695411 Msa0294670:CDS 35.0%
CGTAACGAGTAATGAAATGA+TGG + chr2_3:46695550-46695569 Msa0294670:intron 35.0%
GATATGGCATGTCATATAGA+TGG + chr2_3:46695638-46695657 Msa0294670:CDS 35.0%
CATATGATTACCTTCTTTCC+TGG - chr2_3:46695782-46695801 None:intergenic 35.0%
AATGACCCATCTAATTAGAC+TGG - chr2_3:46695877-46695896 None:intergenic 35.0%
GTCTAATTAGATGGGTCATT+AGG + chr2_3:46695877-46695896 Msa0294670:intron 35.0%
! AAAACATCATTTGATGGCCA+AGG - chr2_3:46695952-46695971 None:intergenic 35.0%
TCAAATATCCCACACCATAT+TGG + chr2_3:46695973-46695992 Msa0294670:intron 35.0%
! CACAAGAACAATGTTGTTTG+TGG - chr2_3:46696002-46696021 None:intergenic 35.0%
CTATGACTATAAAGCTTCAC+GGG - chr2_3:46696073-46696092 None:intergenic 35.0%
AACTCGTTATAATGGCAACA+AGG - chr2_3:46696119-46696138 None:intergenic 35.0%
TACTACTCATGCACAATGAA+TGG + chr2_3:46696197-46696216 Msa0294670:intron 35.0%
GATTGTGTTTATTTCCCACA+TGG - chr2_3:46696456-46696475 None:intergenic 35.0%
GAATCCTAATAACGTGTTAG+GGG - chr2_3:46696567-46696586 None:intergenic 35.0%
AAAAGCTGTGCTTTGATATC+TGG + chr2_3:46696765-46696784 Msa0294670:intron 35.0%
CTTGAGTTAGTATCAGTCTA+TGG + chr2_3:46697059-46697078 Msa0294670:intron 35.0%
AATTACTTCTGCTTGGAGAT+TGG + chr2_3:46697092-46697111 Msa0294670:intron 35.0%
TTTAGACAACAGGGAAAAGA+GGG - chr2_3:46697354-46697373 None:intergenic 35.0%
ATTTAGACAACAGGGAAAAG+AGG - chr2_3:46697355-46697374 None:intergenic 35.0%
TGGGATAATATAGGACTTCA+TGG + chr2_3:46697487-46697506 Msa0294670:intron 35.0%
CAATACAAACTTGATTGCCT+CGG - chr2_3:46697579-46697598 None:intergenic 35.0%
ATTTAGACAACAGGGAAAAG+AGG - chr2_3:46697355-46697374 None:intergenic 35.0%
CCCTGTTGTCTAAATTGTAT+TGG + chr2_3:46697612-46697631 Msa0294670:intron 35.0%
GCCAATACAATTTAGACAAC+AGG - chr2_3:46697616-46697635 None:intergenic 35.0%
! AACTCAAGTTGTGAATCTCT+AGG - chr2_3:46697772-46697791 None:intergenic 35.0%
ATTTAGACAACAGGGAAAAG+AGG - chr2_3:46697355-46697374 None:intergenic 35.0%
CCAGTACAATTTAGACAACA+GGG - chr2_3:46697894-46697913 None:intergenic 35.0%
ATTTAGACAACAGGGAAAAG+AGG - chr2_3:46697355-46697374 None:intergenic 35.0%
ATACATCTACAGCCATTGAT+TGG - chr2_3:46698235-46698254 None:intergenic 35.0%
!!! TATTCAGCCGTTTTGAGTTT+AGG - chr2_3:46698331-46698350 None:intergenic 35.0%
ATTTAGGCAACAGAGAAAGT+AGG - chr2_3:46698500-46698519 None:intergenic 35.0%
ACTTCTATTCTGGACAATGT+TGG + chr2_3:46698827-46698846 Msa0294670:intron 35.0%
GAATTGCATCAGTTACATCT+TGG - chr2_3:46698967-46698986 None:intergenic 35.0%
TGTAACTGATGCAATTCAGA+AGG + chr2_3:46698970-46698989 Msa0294670:CDS 35.0%
CAATCACAAACTGCTTCATT+TGG - chr2_3:46699042-46699061 None:intergenic 35.0%
TGTGCTAAGTGTATCTAATC+CGG + chr2_3:46699075-46699094 Msa0294670:CDS 35.0%
TGTATCTAATCCGGATACAA+GGG + chr2_3:46699084-46699103 Msa0294670:CDS 35.0%
ATTGATATTGTAGCCAGTAC+TGG + chr2_3:46699145-46699164 Msa0294670:CDS 35.0%
!! ATGGCATGATGGGAAAATTT+TGG - chr2_3:46699372-46699391 None:intergenic 35.0%
TATTTACTTTGGCCCTGTTT+CGG + chr2_3:46699428-46699447 Msa0294670:intron 35.0%
ATTGATTGTTCACCGAAACA+GGG - chr2_3:46699443-46699462 None:intergenic 35.0%
AATTGATTGTTCACCGAAAC+AGG - chr2_3:46699444-46699463 None:intergenic 35.0%
AACATGACAATCTGTATCAG+AGG - chr2_3:46699802-46699821 None:intergenic 35.0%
ATGATCTTGAAATTAAGGCC+TGG + chr2_3:46699975-46699994 Msa0294670:CDS 35.0%
GGTGTAAAGACAAAGAAGAA+GGG + chr2_3:46700007-46700026 Msa0294670:CDS 35.0%
GGAAAGAAGAAGAAAGGTAA+TGG + chr2_3:46700034-46700053 Msa0294670:intron 35.0%
TAAAGCTTAAACAGACCCTT+GGG - chr2_3:46700066-46700085 None:intergenic 35.0%
TTAAAGCTTAAACAGACCCT+TGG - chr2_3:46700067-46700086 None:intergenic 35.0%
ATGGTTGGATAACAAATGCT+TGG + chr2_3:46700161-46700180 Msa0294670:intron 35.0%
!!! GGTTTTTTATGCAGGTAAGA+AGG + chr2_3:46700182-46700201 Msa0294670:intron 35.0%
! TTTTTATGCAGGTAAGAAGG+GGG + chr2_3:46700185-46700204 Msa0294670:intron 35.0%
ACATTCTGACAGATACAACT+AGG - chr2_3:46700315-46700334 None:intergenic 35.0%
AAGTATACTGCAATGTGACA+TGG - chr2_3:46700375-46700394 None:intergenic 35.0%
AGCGGTTTATATAGAGAGAG+AGG - chr2_3:46694414-46694433 None:intergenic 40.0%
TAATCGGCGTAAGAAGGAAA+GGG - chr2_3:46694495-46694514 None:intergenic 40.0%
ATAATCGGCGTAAGAAGGAA+AGG - chr2_3:46694496-46694515 None:intergenic 40.0%
GTGAAATAATCGGCGTAAGA+AGG - chr2_3:46694501-46694520 None:intergenic 40.0%
! TCTTACGCCGATTATTTCAC+TGG + chr2_3:46694501-46694520 Msa0294670:five_prime_UTR 40.0%
TGACCCATTTGCATGAAGTT+TGG + chr2_3:46694629-46694648 Msa0294670:intron 40.0%
GCTATATTCCGTTACCCATT+TGG + chr2_3:46694711-46694730 Msa0294670:intron 40.0%
GCTATATTCAGTGACCCATT+TGG + chr2_3:46694755-46694774 Msa0294670:intron 40.0%
TGTTTCTTCTGGGTTGTTAC+AGG + chr2_3:46694844-46694863 Msa0294670:intron 40.0%
CATCATCTGACATGGTGAAT+TGG - chr2_3:46694883-46694902 None:intergenic 40.0%
!!! GTGTATGTTTTGGCTGTTGT+TGG + chr2_3:46695578-46695597 Msa0294670:intron 40.0%
TGTTGGCAACTGCATGATAA+CGG + chr2_3:46695595-46695614 Msa0294670:intron 40.0%
ACTAGTAAAGCCAGGAAAGA+AGG + chr2_3:46695769-46695788 Msa0294670:CDS 40.0%
GTTGTTTGTGGTCACCAATA+TGG - chr2_3:46695990-46696009 None:intergenic 40.0%
CAGTTACGGAACAAGTGTTT+AGG - chr2_3:46696419-46696438 None:intergenic 40.0%
CTAAACACTTGTTCCGTAAC+TGG + chr2_3:46696417-46696436 Msa0294670:intron 40.0%
ACTTGTTCCGTAACTGGTAT+GGG + chr2_3:46696423-46696442 Msa0294670:intron 40.0%
TATACTGCCCATACCAGTTA+CGG - chr2_3:46696433-46696452 None:intergenic 40.0%
GAAAACTACAAGCAACCTAC+TGG - chr2_3:46696642-46696661 None:intergenic 40.0%
ACAACATAGGACTCTGTAGT+AGG + chr2_3:46697194-46697213 Msa0294670:intron 40.0%
TGTTAATGACAACTTTGCCG+AGG + chr2_3:46697307-46697326 Msa0294670:intron 40.0%
CAATACAAACTTGACTGCCT+CGG - chr2_3:46697327-46697346 None:intergenic 40.0%
TGTTAATGACAACTTTGCCG+AGG + chr2_3:46697307-46697326 Msa0294670:intron 40.0%
CGAGGCAATCAAGTTTGTAT+TGG + chr2_3:46697577-46697596 Msa0294670:intron 40.0%
TGTTAATGACAACTTTGCCG+AGG + chr2_3:46697307-46697326 Msa0294670:intron 40.0%
CAATACAAACTTGACTGCCT+CGG - chr2_3:46697327-46697346 None:intergenic 40.0%
CCCTGTTGTCTAAATTGTAC+TGG + chr2_3:46697891-46697910 Msa0294670:intron 40.0%
GCCAGTACAATTTAGACAAC+AGG - chr2_3:46697895-46697914 None:intergenic 40.0%
ACCAATAGACTTGATTGCCT+CGG - chr2_3:46698100-46698119 None:intergenic 40.0%
CCAAACAGAATCGATAACCT+CGG - chr2_3:46698289-46698308 None:intergenic 40.0%
!!! CGTTTTGAGTTTAGGCAACA+GGG - chr2_3:46698323-46698342 None:intergenic 40.0%
CCTGTTGCCTAAACTCAAAA+CGG + chr2_3:46698321-46698340 Msa0294670:intron 40.0%
! ACTTGTTAAGGCTCTAACGA+CGG + chr2_3:46698602-46698621 Msa0294670:intron 40.0%
! TCTAACGACGGTATTGGAAT+TGG + chr2_3:46698614-46698633 Msa0294670:intron 40.0%
!! GTTACATCTTGGTTCTGTCA+GGG - chr2_3:46698956-46698975 None:intergenic 40.0%
!! AGTTACATCTTGGTTCTGTC+AGG - chr2_3:46698957-46698976 None:intergenic 40.0%
TCACAAACTGCTTCATTTGG+TGG - chr2_3:46699039-46699058 None:intergenic 40.0%
GTGTATCTAATCCGGATACA+AGG + chr2_3:46699083-46699102 Msa0294670:CDS 40.0%
TGAAGTTACCTTGCAGAGAA+TGG - chr2_3:46699391-46699410 None:intergenic 40.0%
GTTCCTTTATACTAGGGCTT+TGG + chr2_3:46699668-46699687 Msa0294670:intron 40.0%
CTTCCAAAGCCCTAGTATAA+AGG - chr2_3:46699674-46699693 None:intergenic 40.0%
GAAGAAAAAAGAGCTCGTCT+GGG + chr2_3:46699690-46699709 Msa0294670:intron 40.0%
TGTTGCCCACATCAAATTCA+CGG + chr2_3:46699877-46699896 Msa0294670:CDS 40.0%
CAAGACCGTGAATTTGATGT+GGG - chr2_3:46699885-46699904 None:intergenic 40.0%
! TTTTAGTAGGCTGGATTTCC+TGG - chr2_3:46699949-46699968 None:intergenic 40.0%
!!! CATCTACTGTTTTAGTAGGC+TGG - chr2_3:46699958-46699977 None:intergenic 40.0%
GGGTGTAAAGACAAAGAAGA+AGG + chr2_3:46700006-46700025 Msa0294670:CDS 40.0%
GTAAAGACAAAGAAGAAGGG+TGG + chr2_3:46700010-46700029 Msa0294670:CDS 40.0%
!! TCAATTTTGCTCTTGGGTTG+AGG - chr2_3:46700241-46700260 None:intergenic 40.0%
! GCAGACTCAATTTTGCTCTT+GGG - chr2_3:46700247-46700266 None:intergenic 40.0%
! TGCAGACTCAATTTTGCTCT+TGG - chr2_3:46700248-46700267 None:intergenic 40.0%
GCATAGCATTCCTACAATGT+CGG + chr2_3:46700342-46700361 Msa0294670:three_prime_UTR 40.0%
CATAGCATTCCTACAATGTC+GGG + chr2_3:46700343-46700362 Msa0294670:three_prime_UTR 40.0%
TGGATAATTCCCGACATTGT+AGG - chr2_3:46700355-46700374 None:intergenic 40.0%
TTGTCGCTGCTGTCTTTACA+CGG - chr2_3:46694390-46694409 None:intergenic 45.0%
TGAGACGAAAGTTGAGAGAG+TGG - chr2_3:46694471-46694490 None:intergenic 45.0%
! GCAGTGTTACTCACCTTGTA+GGG - chr2_3:46694548-46694567 None:intergenic 45.0%
! AGCAGTGTTACTCACCTTGT+AGG - chr2_3:46694549-46694568 None:intergenic 45.0%
GCTATATTCCGTGACCCATT+TGG + chr2_3:46694667-46694686 Msa0294670:intron 45.0%
TCACCATGTCAGATGATGAG+AGG + chr2_3:46694885-46694904 Msa0294670:exon 45.0%
CACCATGTCAGATGATGAGA+GGG + chr2_3:46694886-46694905 Msa0294670:exon 45.0%
ATCCCTCTCATCATCTGACA+TGG - chr2_3:46694891-46694910 None:intergenic 45.0%
AGATGATGAGAGGGATGAGA+AGG + chr2_3:46694895-46694914 Msa0294670:CDS 45.0%
TTCTGCTGCACTCTTGTACT+TGG - chr2_3:46694951-46694970 None:intergenic 45.0%
!! TTGAACAGAGGCATTGCAGT+TGG + chr2_3:46695109-46695128 Msa0294670:intron 45.0%
!!! TGGTTTTAGCTTATGGGGTG+TGG + chr2_3:46695330-46695349 Msa0294670:intron 45.0%
! GGGTGTGGTGTGTTTTGTAA+AGG + chr2_3:46695345-46695364 Msa0294670:intron 45.0%
! GACGAAACAGTGTTGGAAGT+AGG + chr2_3:46695479-46695498 Msa0294670:CDS 45.0%
TGGCTCACACTCATGTTCTT+CGG + chr2_3:46695675-46695694 Msa0294670:CDS 45.0%
! ACGTGCTGCTGATGTAATTG+CGG + chr2_3:46695715-46695734 Msa0294670:CDS 45.0%
!! TCCTGGCTTTACTAGTCTCA+AGG - chr2_3:46695765-46695784 None:intergenic 45.0%
GTGTGAATGTTTCCATGCCT+TGG + chr2_3:46695932-46695951 Msa0294670:intron 45.0%
! ATCATTTGATGGCCAAGGCA+TGG - chr2_3:46695947-46695966 None:intergenic 45.0%
TGTGGTCACCAATATGGTGT+GGG - chr2_3:46695984-46696003 None:intergenic 45.0%
TTGTGGTCACCAATATGGTG+TGG - chr2_3:46695985-46696004 None:intergenic 45.0%
CACTTGTTCCGTAACTGGTA+TGG + chr2_3:46696422-46696441 Msa0294670:intron 45.0%
GTATGGGCAGTATACCATGT+GGG + chr2_3:46696439-46696458 Msa0294670:intron 45.0%
TAATTAGGTGCTTGCTCCAG+TGG + chr2_3:46696514-46696533 Msa0294670:intron 45.0%
GGTTCCCCTAACACGTTATT+AGG + chr2_3:46696560-46696579 Msa0294670:intron 45.0%
TTGTTCACTCAGTAGCCAGT+AGG + chr2_3:46696624-46696643 Msa0294670:intron 45.0%
GATATCTGGCAGGCACAATT+TGG + chr2_3:46696779-46696798 Msa0294670:intron 45.0%
TGCTCACTTGCATGTATCCT+AGG + chr2_3:46697218-46697237 Msa0294670:intron 45.0%
! CTCAAAAAGGTGTACAGCCT+AGG - chr2_3:46697238-46697257 None:intergenic 45.0%
CGAGGCAGTCAAGTTTGTAT+TGG + chr2_3:46697325-46697344 Msa0294670:intron 45.0%
CGAGGCAGTCAAGTTTGTAT+TGG + chr2_3:46697325-46697344 Msa0294670:intron 45.0%
AGTAGGTTGCATGTTTCCCT+TGG + chr2_3:46698028-46698047 Msa0294670:intron 45.0%
TGTTACTGACAACTTTGCCG+AGG + chr2_3:46698080-46698099 Msa0294670:intron 45.0%
TAGAAATGGCAACTTTGCCG+AGG + chr2_3:46698269-46698288 Msa0294670:intron 45.0%
!! CCGAGGTTATCGATTCTGTT+TGG + chr2_3:46698286-46698305 Msa0294670:intron 45.0%
GTTTAGGCAACAGGGAAAAG+AGG - chr2_3:46698315-46698334 None:intergenic 45.0%
!!! CCGTTTTGAGTTTAGGCAAC+AGG - chr2_3:46698324-46698343 None:intergenic 45.0%
! CAGAATGGCTACTTTGCATG+AGG + chr2_3:46698453-46698472 Msa0294670:intron 45.0%
! TAAGGCTCTAACGACGGTAT+TGG + chr2_3:46698608-46698627 Msa0294670:intron 45.0%
GCAGCAAAGAAAGAACACCA+AGG - chr2_3:46698749-46698768 None:intergenic 45.0%
GCATCATCAACCCTTGTATC+CGG - chr2_3:46699097-46699116 None:intergenic 45.0%
! ATTGTAGCCAGTACTGGAGA+AGG + chr2_3:46699151-46699170 Msa0294670:CDS 45.0%
TGCTTCTCATCCAACAGCTT+AGG - chr2_3:46699268-46699287 None:intergenic 45.0%
CTTGCAGAGAATGGCATGAT+GGG - chr2_3:46699382-46699401 None:intergenic 45.0%
GGAAGAAAAAAGAGCTCGTC+TGG + chr2_3:46699689-46699708 Msa0294670:intron 45.0%
! CCAGGCTTTTCATGTAGAAC+AGG - chr2_3:46699756-46699775 None:intergenic 45.0%
CCTGTTCTACATGAAAAGCC+TGG + chr2_3:46699753-46699772 Msa0294670:CDS 45.0%
GCAAGACCGTGAATTTGATG+TGG - chr2_3:46699886-46699905 None:intergenic 45.0%
ACGGTCTTGCTAATGCCAAA+TGG + chr2_3:46699896-46699915 Msa0294670:CDS 45.0%
GTGATACGGTCTGATCCATT+TGG - chr2_3:46699914-46699933 None:intergenic 45.0%
AATTAAGGCCTGGCTAGCAT+TGG + chr2_3:46699985-46700004 Msa0294670:CDS 45.0%
ATTAAGGCCTGGCTAGCATT+GGG + chr2_3:46699986-46700005 Msa0294670:CDS 45.0%
AAGACAAAGAAGAAGGGTGG+TGG + chr2_3:46700013-46700032 Msa0294670:CDS 45.0%
!! GGTGGTGGAAAGAAGAAGAA+AGG + chr2_3:46700028-46700047 Msa0294670:CDS 45.0%
! AAGGTAATGGTCGAATCCCA+AGG + chr2_3:46700047-46700066 Msa0294670:intron 45.0%
! AGGTAATGGTCGAATCCCAA+GGG + chr2_3:46700048-46700067 Msa0294670:intron 45.0%
!! CAAAAGTGTCTGTTCTGCTG+TGG + chr2_3:46700419-46700438 Msa0294670:three_prime_UTR 45.0%
!! ATAAGAATAATATATTATTT+CGG - chr2_3:46697691-46697710 None:intergenic 5.0%
GCTGTCTTTACACGGATGGA+GGG - chr2_3:46694382-46694401 None:intergenic 50.0%
TGCTGTCTTTACACGGATGG+AGG - chr2_3:46694383-46694402 None:intergenic 50.0%
GAGTGGCTAAGTAGCTGTGA+AGG - chr2_3:46694454-46694473 None:intergenic 50.0%
TGAGAGGGATGAGAAGGAGT+TGG + chr2_3:46694901-46694920 Msa0294670:CDS 50.0%
TTCCAACACTGTTTCGTCGC+TGG - chr2_3:46695477-46695496 None:intergenic 50.0%
! AGATGGGTTCATTGCTGCTG+TGG + chr2_3:46695655-46695674 Msa0294670:CDS 50.0%
GGCTCACACTCATGTTCTTC+GGG + chr2_3:46695676-46695695 Msa0294670:CDS 50.0%
TCACACTCATGTTCTTCGGG+AGG + chr2_3:46695679-46695698 Msa0294670:CDS 50.0%
CACACTCATGTTCTTCGGGA+GGG + chr2_3:46695680-46695699 Msa0294670:CDS 50.0%
TGCTGCTGATGTAATTGCGG+CGG + chr2_3:46695718-46695737 Msa0294670:CDS 50.0%
GCCTTGAGACTAGTAAAGCC+AGG + chr2_3:46695761-46695780 Msa0294670:CDS 50.0%
TTTACCTGGGTGCGAGTTCA+AGG + chr2_3:46696163-46696182 Msa0294670:intron 50.0%
GGTATGGGCAGTATACCATG+TGG + chr2_3:46696438-46696457 Msa0294670:intron 50.0%
GCTGTGCTTTGATATCTGGC+AGG + chr2_3:46696769-46696788 Msa0294670:intron 50.0%
GCACACTTCTCTATTGCAGC+TGG + chr2_3:46697948-46697967 Msa0294670:intron 50.0%
GCCGAGGCAATCAAGTCTAT+TGG + chr2_3:46698096-46698115 Msa0294670:intron 50.0%
! ACGACGGTATTGGAATTGGC+TGG + chr2_3:46698618-46698637 Msa0294670:intron 50.0%
TACCTTGCCTTCTCCAGTAC+TGG - chr2_3:46699161-46699180 None:intergenic 50.0%
TCCTTTGCAGCCTAAGCTGT+TGG + chr2_3:46699255-46699274 Msa0294670:intron 50.0%
TCCAACAGCTTAGGCTGCAA+AGG - chr2_3:46699259-46699278 None:intergenic 50.0%
CCTTGCAGAGAATGGCATGA+TGG - chr2_3:46699383-46699402 None:intergenic 50.0%
CCATCATGCCATTCTCTGCA+AGG + chr2_3:46699380-46699399 Msa0294670:intron 50.0%
AAGAGCTCGTCTGGGTTTAG+TGG + chr2_3:46699698-46699717 Msa0294670:CDS 50.0%
GGAGTGGGTGAGATGTGATA+CGG - chr2_3:46699928-46699947 None:intergenic 50.0%
TATCACATCTCACCCACTCC+AGG + chr2_3:46699928-46699947 Msa0294670:CDS 50.0%
TAGGCTGGATTTCCTGGAGT+GGG - chr2_3:46699943-46699962 None:intergenic 50.0%
CTTTACACCCAATGCTAGCC+AGG - chr2_3:46699996-46700015 None:intergenic 50.0%
! TTTACACGGATGGAGGGCGT+GGG - chr2_3:46694376-46694395 None:intergenic 55.0%
CGCTGCTGTCTTTACACGGA+TGG - chr2_3:46694386-46694405 None:intergenic 55.0%
GGCAAACACTGCTGCTGAAG+TGG + chr2_3:46695739-46695758 Msa0294670:CDS 55.0%
ATTGCCTTGAACTCGCACCC+AGG - chr2_3:46696170-46696189 None:intergenic 55.0%
! AGCCAGTACTGGAGAAGGCA+AGG + chr2_3:46699156-46699175 Msa0294670:CDS 55.0%
GTAGGCTGGATTTCCTGGAG+TGG - chr2_3:46699944-46699963 None:intergenic 55.0%
CTTTACACGGATGGAGGGCG+TGG - chr2_3:46694377-46694396 None:intergenic 60.0%
CGCTGGCGAGAGGAGAGAAA+TGG - chr2_3:46695460-46695479 None:intergenic 60.0%
ACTGTTTCGTCGCTGGCGAG+AGG - chr2_3:46695470-46695489 None:intergenic 60.0%
CGCCAGCGACGAAACAGTGT+TGG + chr2_3:46695472-46695491 Msa0294670:CDS 60.0%
TCTTCGGGAGGGACCAGTCA+CGG + chr2_3:46695691-46695710 Msa0294670:CDS 60.0%
GCAGGTAAGAAGGGGGCTGA+AGG + chr2_3:46700192-46700211 Msa0294670:intron 60.0%
! ACGGATGGAGGGCGTGGGTA+GGG - chr2_3:46694371-46694390 None:intergenic 65.0%
CTTCGGGAGGGACCAGTCAC+GGG + chr2_3:46695692-46695711 Msa0294670:CDS 65.0%
TCAGCAGCACGTCCCGTGAC+TGG - chr2_3:46695707-46695726 None:intergenic 65.0%
! CACGGATGGAGGGCGTGGGT+AGG - chr2_3:46694372-46694391 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 46694347 46700481 46694347 ID=Msa0294670;Name=Msa0294670
chr2_3 mRNA 46694347 46700481 46694347 ID=Msa0294670-mRNA-1;Parent=Msa0294670;Name=Msa0294670-mRNA-1;_AED=0.08;_eAED=0.08;_QI=231|0.88|0.8|1|1|1|10|221|371
chr2_3 exon 46694347 46694553 46694347 ID=Msa0294670-mRNA-1:exon:14579;Parent=Msa0294670-mRNA-1
chr2_3 exon 46694866 46694980 46694866 ID=Msa0294670-mRNA-1:exon:14580;Parent=Msa0294670-mRNA-1
chr2_3 exon 46695117 46695201 46695117 ID=Msa0294670-mRNA-1:exon:14581;Parent=Msa0294670-mRNA-1
chr2_3 exon 46695367 46695516 46695367 ID=Msa0294670-mRNA-1:exon:14582;Parent=Msa0294670-mRNA-1
chr2_3 exon 46695637 46695790 46695637 ID=Msa0294670-mRNA-1:exon:14583;Parent=Msa0294670-mRNA-1
chr2_3 exon 46698962 46699177 46698962 ID=Msa0294670-mRNA-1:exon:14584;Parent=Msa0294670-mRNA-1
chr2_3 exon 46699265 46699358 46699265 ID=Msa0294670-mRNA-1:exon:14585;Parent=Msa0294670-mRNA-1
chr2_3 exon 46699694 46699774 46699694 ID=Msa0294670-mRNA-1:exon:14586;Parent=Msa0294670-mRNA-1
chr2_3 exon 46699870 46700049 46699870 ID=Msa0294670-mRNA-1:exon:14587;Parent=Msa0294670-mRNA-1
chr2_3 exon 46700196 46700481 46700196 ID=Msa0294670-mRNA-1:exon:14588;Parent=Msa0294670-mRNA-1
chr2_3 five_prime_UTR 46694347 46694553 46694347 ID=Msa0294670-mRNA-1:five_prime_utr;Parent=Msa0294670-mRNA-1
chr2_3 five_prime_UTR 46694866 46694889 46694866 ID=Msa0294670-mRNA-1:five_prime_utr;Parent=Msa0294670-mRNA-1
chr2_3 CDS 46694890 46694980 46694890 ID=Msa0294670-mRNA-1:cds;Parent=Msa0294670-mRNA-1
chr2_3 CDS 46695117 46695201 46695117 ID=Msa0294670-mRNA-1:cds;Parent=Msa0294670-mRNA-1
chr2_3 CDS 46695367 46695516 46695367 ID=Msa0294670-mRNA-1:cds;Parent=Msa0294670-mRNA-1
chr2_3 CDS 46695637 46695790 46695637 ID=Msa0294670-mRNA-1:cds;Parent=Msa0294670-mRNA-1
chr2_3 CDS 46698962 46699177 46698962 ID=Msa0294670-mRNA-1:cds;Parent=Msa0294670-mRNA-1
chr2_3 CDS 46699265 46699358 46699265 ID=Msa0294670-mRNA-1:cds;Parent=Msa0294670-mRNA-1
chr2_3 CDS 46699694 46699774 46699694 ID=Msa0294670-mRNA-1:cds;Parent=Msa0294670-mRNA-1
chr2_3 CDS 46699870 46700049 46699870 ID=Msa0294670-mRNA-1:cds;Parent=Msa0294670-mRNA-1
chr2_3 CDS 46700196 46700260 46700196 ID=Msa0294670-mRNA-1:cds;Parent=Msa0294670-mRNA-1
chr2_3 three_prime_UTR 46700261 46700481 46700261 ID=Msa0294670-mRNA-1:three_prime_utr;Parent=Msa0294670-mRNA-1
Gene Sequence

>Msa0294670

ATGTCAGATGATGAGAGGGATGAGAAGGAGTTGGATCTCACTTCTCCTGATGTTGTAACCAAGTACAAGAGTGCAGCAGAAATCGTTAACAAGGCATTGCAGTTGGTTATTTCAGAATGCAAACCAAATGTTAAGATTGTTGACATTTGTGAGAAAGGGGATTCGTTTATTAGAGAGCAAACTGGTAAATTGTACAAGAATGTGAAGAAGAAGATTGAAAGAGGTGTTGCTTTCCCAACATGCATATCTGTAAACAACACTGTCTGCCATTTCTCTCCTCTCGCCAGCGACGAAACAGTGTTGGAAGTAGGTGATATATTGAAAATTGATATGGCATGTCATATAGATGGGTTCATTGCTGCTGTGGCTCACACTCATGTTCTTCGGGAGGGACCAGTCACGGGACGTGCTGCTGATGTAATTGCGGCGGCAAACACTGCTGCTGAAGTGGCCTTGAGACTAGTAAAGCCAGGAAAGAAGAACCAAGATGTAACTGATGCAATTCAGAAGGTCGCTGCTGCCTATGATTGTAGAATTGTTGAGGGTGTTCTTAGCCACCAAATGAAGCAGTTTGTGATTGATGCAAATAAGGTTGTGCTAAGTGTATCTAATCCGGATACAAGGGTTGATGATGCAGAATTCGAAGAGAATGAAGTTTATGCTATTGATATTGTAGCCAGTACTGGAGAAGGCAAGCCTAAGCTGTTGGATGAGAAGCAGACAACTATTTATAAGAGGGCTGTTGACAGAAGTTATAACTTGAAGATGAAAGCATCGAGATTTATTTACAAAAAAAGAGCTCGTCTGGGTTTAGTGGAATGCATGAATCACGAGCTTCTGCAGCCTTATCCTGTTCTACATGAAAAGCCTGGTGATTATGTTGCCCACATCAAATTCACGGTCTTGCTAATGCCAAATGGATCAGACCGTATCACATCTCACCCACTCCAGGAAATCCAGCCTACTAAAACAGTAGATGATCTTGAAATTAAGGCCTGGCTAGCATTGGGTGTAAAGACAAAGAAGAAGGGTGGTGGAAAGAAGAAGAAAGGTAAGAAGGGGGCTGAAGGTGAAGCTGAAGCTGAAGCTGATGCCTCAACCCAAGAGCAAAATTGA

Protein sequence

>Msa0294670

MSDDERDEKELDLTSPDVVTKYKSAAEIVNKALQLVISECKPNVKIVDICEKGDSFIREQTGKLYKNVKKKIERGVAFPTCISVNNTVCHFSPLASDETVLEVGDILKIDMACHIDGFIAAVAHTHVLREGPVTGRAADVIAAANTAAEVALRLVKPGKKNQDVTDAIQKVAAAYDCRIVEGVLSHQMKQFVIDANKVVLSVSNPDTRVDDAEFEENEVYAIDIVASTGEGKPKLLDEKQTTIYKRAVDRSYNLKMKASRFIYKKRARLGLVECMNHELLQPYPVLHEKPGDYVAHIKFTVLLMPNGSDRITSHPLQEIQPTKTVDDLEIKAWLALGVKTKKKGGGKKKKGKKGAEGEAEAEADASTQEQN*