AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1258540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1258540 MtrunA17_Chr8g0336121 100.000 92 0 0 1 92 1 92 7.50e-63 185
Msa1258540 MtrunA17_Chr4g0055341 100.000 92 0 0 1 92 1 92 7.50e-63 185
Msa1258540 MtrunA17_Chr4g0057431 100.000 92 0 0 1 92 1 92 7.50e-63 185
Msa1258540 MtrunA17_Chr8g0336341 100.000 92 0 0 1 92 1 92 7.50e-63 185
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1258540 AT3G10950.1 93.478 92 6 0 1 92 1 92 4.50e-59 176
Msa1258540 AT3G60245.1 92.308 91 7 0 1 91 1 91 8.73e-58 172

Find 39 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGGTACATTATAATATTT+TGG 0.135695 8_2:-59726049 Msa1258540:three_prime_UTR
AAGCATTGAAAGAATCTATT+AGG 0.280966 8_2:+59726147 None:intergenic
AGAGAAAGGCTGTAGGAATA+TGG 0.316747 8_2:-59726556 Msa1258540:CDS
GCTTCTTCTTAAATTAAGTT+TGG 0.336508 8_2:-59726314 Msa1258540:three_prime_UTR
TAGCTCTGCACAATCAATTA+AGG 0.386874 8_2:-59725922 Msa1258540:three_prime_UTR
GAGAAAGGCTGTAGGAATAT+GGG 0.416937 8_2:-59726555 Msa1258540:CDS
GAACAATCATGGTTCTGCTT+TGG 0.422461 8_2:-59725961 Msa1258540:three_prime_UTR
GCTGGCATCGTTGGCAAATA+CGG 0.428463 8_2:-59727350 Msa1258540:intron
ATGATATTAGGTACCCGTTA+TGG 0.441488 8_2:-59726779 Msa1258540:intron
CTGCGTCTGCTGTGACTGTT+CGG 0.466153 8_2:-59726396 Msa1258540:CDS
TTGCTCCCTCAGCCTCCTGA+TGG 0.474414 8_2:+59726369 None:intergenic
ACGCAAACTAGCACCATAAC+GGG 0.476774 8_2:+59726766 None:intergenic
TGACTGTTCGGAGCACCATC+AGG 0.483900 8_2:-59726384 Msa1258540:CDS
AGCAGTATTCTATAATCAAA+AGG 0.487147 8_2:+59726026 None:intergenic
TCGTGATTCTGCTGAGGCCA+TGG 0.495949 8_2:-59726067 Msa1258540:three_prime_UTR
ACAAAGAAGGCTGGCATCGT+TGG 0.496247 8_2:-59727359 Msa1258540:CDS
GTGGAGTGGCAGCGGTGGAA+TGG 0.496830 8_2:+59727558 None:intergenic
ATCGAAGGATGTGTGAGCTA+TGG 0.523123 8_2:+59727534 None:intergenic
TACGCAAACTAGCACCATAA+CGG 0.535734 8_2:+59726765 None:intergenic
AGAAAGGCTGTAGGAATATG+GGG 0.537082 8_2:-59726554 Msa1258540:CDS
GGAGCACCATCAGGAGGCTG+AGG 0.547327 8_2:-59726375 Msa1258540:CDS
ACTGCTTAGTAGAACAATCA+TGG 0.557531 8_2:-59725972 Msa1258540:three_prime_UTR
GACTGCGGTAAAGTGAAAGC+AGG 0.566191 8_2:-59726524 Msa1258540:CDS
AGGTTGTTGCAGATAATGAA+AGG 0.567069 8_2:+59726167 None:intergenic
ACTAAGAGAACAAAGAAGGC+TGG 0.571248 8_2:-59727368 Msa1258540:CDS
TGTAGGAATATGGGGATGCA+AGG 0.596749 8_2:-59726546 Msa1258540:CDS
ATGGAGTGGAGTGGCAGCGG+TGG 0.597969 8_2:+59727553 None:intergenic
GCAGACTAAGAGAACAAAGA+AGG 0.598781 8_2:-59727372 Msa1258540:intron
GCTATGGAGTGGAGTGGCAG+CGG 0.609902 8_2:+59727550 None:intergenic
CAAAATATTATAATGTACCA+TGG 0.617361 8_2:+59726050 None:intergenic
GAGCACCATCAGGAGGCTGA+GGG 0.623110 8_2:-59726374 Msa1258540:CDS
GCAGTATGCTGTGAAGAGAA+AGG 0.632531 8_2:-59726570 Msa1258540:intron
TGCGGTAAAGTGAAAGCAGG+CGG 0.647382 8_2:-59726521 Msa1258540:CDS
CTGTTCGGAGCACCATCAGG+AGG 0.656338 8_2:-59726381 Msa1258540:CDS
GCTGTGAAGAGAAAGGCTGT+AGG 0.663437 8_2:-59726563 Msa1258540:CDS
ATAATGAAAGGAAACAACAA+AGG 0.683390 8_2:+59726179 None:intergenic
GTGTGAGCTATGGAGTGGAG+TGG 0.690991 8_2:+59727544 None:intergenic
ATATGGGGATGCAAGGACTG+CGG 0.722475 8_2:-59726539 Msa1258540:CDS
AGGATGTGTGAGCTATGGAG+TGG 0.727679 8_2:+59727539 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTATTGTATGATATT+AGG - chr8_2:59726698-59726717 Msa1258540:intron 10.0%
!!! TTATTTTATTGTATGATATT+AGG - chr8_2:59726698-59726717 Msa1258540:intron 10.0%
!!! AATTTTCTTATTCTTTTTCT+CGG - chr8_2:59727009-59727028 Msa1258540:intron 15.0%
!!! TTTTATTTTTCTATTCTGAA+AGG - chr8_2:59727034-59727053 Msa1258540:intron 15.0%
!!! AATTTTCTTATTCTTTTTCT+CGG - chr8_2:59727009-59727028 Msa1258540:intron 15.0%
!!! TTTTATTTTTCTATTCTGAA+AGG - chr8_2:59727034-59727053 Msa1258540:intron 15.0%
!!! TTGAAAGAAATGTTTAGAAT+TGG + chr8_2:59726025-59726044 None:intergenic 20.0%
!! ATCTAAATAATTATGCACAT+AGG - chr8_2:59726281-59726300 Msa1258540:three_prime_UTR 20.0%
!! TTATTTATTTGCATAAGCTA+AGG + chr8_2:59726523-59726542 None:intergenic 20.0%
!!! AATAAATAACCTTTTGTGTA+AGG - chr8_2:59726430-59726449 Msa1258540:intron 20.0%
!!! AAATTTTTCTGTGAATTTTG+TGG - chr8_2:59726782-59726801 Msa1258540:intron 20.0%
!!! ATCAAATCATTTAGTTTACT+AGG - chr8_2:59726846-59726865 Msa1258540:intron 20.0%
!! CAAAATATTATAATGTACCA+TGG + chr8_2:59727442-59727461 None:intergenic 20.0%
!!! CATGGTACATTATAATATTT+TGG - chr8_2:59727440-59727459 Msa1258540:intron 20.0%
!!! CTTAATATAACGATTTTGAA+GGG - chr8_2:59727484-59727503 Msa1258540:intron 20.0%
!!! TTGAAAGAAATGTTTAGAAT+TGG + chr8_2:59726025-59726044 None:intergenic 20.0%
!! ATCTAAATAATTATGCACAT+AGG - chr8_2:59726281-59726300 Msa1258540:three_prime_UTR 20.0%
!! TTATTTATTTGCATAAGCTA+AGG + chr8_2:59726523-59726542 None:intergenic 20.0%
!!! AATAAATAACCTTTTGTGTA+AGG - chr8_2:59726430-59726449 Msa1258540:intron 20.0%
!!! AAATTTTTCTGTGAATTTTG+TGG - chr8_2:59726782-59726801 Msa1258540:intron 20.0%
!!! ATCAAATCATTTAGTTTACT+AGG - chr8_2:59726846-59726865 Msa1258540:intron 20.0%
!! CAAAATATTATAATGTACCA+TGG + chr8_2:59727442-59727461 None:intergenic 20.0%
!!! CATGGTACATTATAATATTT+TGG - chr8_2:59727440-59727459 Msa1258540:intron 20.0%
!!! CTTAATATAACGATTTTGAA+GGG - chr8_2:59727484-59727503 Msa1258540:intron 20.0%
!! AGAAATGTTTAGAATTGGAT+TGG + chr8_2:59726020-59726039 None:intergenic 25.0%
! AAGTACAGATTCAACATAAA+AGG + chr8_2:59726084-59726103 None:intergenic 25.0%
!! AAATGTGGTTTAGTTTATGA+TGG - chr8_2:59726223-59726242 Msa1258540:three_prime_UTR 25.0%
! ATAATTATGCACATAGGTAT+AGG - chr8_2:59726287-59726306 Msa1258540:three_prime_UTR 25.0%
!! TTCTAGGTGGTTTAATATTT+TGG - chr8_2:59726583-59726602 Msa1258540:intron 25.0%
!! TCTAGGTGGTTTAATATTTT+GGG - chr8_2:59726584-59726603 Msa1258540:intron 25.0%
! ACAAATACAGTTCATGAATT+GGG + chr8_2:59726636-59726655 None:intergenic 25.0%
! TACAAATACAGTTCATGAAT+TGG + chr8_2:59726637-59726656 None:intergenic 25.0%
! ATAATGATAACAAAGTCATG+AGG + chr8_2:59727063-59727082 None:intergenic 25.0%
! GCTTCTTCTTAAATTAAGTT+TGG - chr8_2:59727175-59727194 Msa1258540:intron 25.0%
! ATAATGAAAGGAAACAACAA+AGG + chr8_2:59727313-59727332 None:intergenic 25.0%
!!! AAGCATTGAAAGAATCTATT+AGG + chr8_2:59727345-59727364 None:intergenic 25.0%
! ATCAAAACAAGAAAAACACT+AGG + chr8_2:59727388-59727407 None:intergenic 25.0%
! AGCAGTATTCTATAATCAAA+AGG + chr8_2:59727466-59727485 None:intergenic 25.0%
!! GCTTAATATAACGATTTTGA+AGG - chr8_2:59727483-59727502 Msa1258540:intron 25.0%
!! AGAAATGTTTAGAATTGGAT+TGG + chr8_2:59726020-59726039 None:intergenic 25.0%
! AAGTACAGATTCAACATAAA+AGG + chr8_2:59726084-59726103 None:intergenic 25.0%
!! AAATGTGGTTTAGTTTATGA+TGG - chr8_2:59726223-59726242 Msa1258540:three_prime_UTR 25.0%
! ATAATTATGCACATAGGTAT+AGG - chr8_2:59726287-59726306 Msa1258540:three_prime_UTR 25.0%
!! TTCTAGGTGGTTTAATATTT+TGG - chr8_2:59726583-59726602 Msa1258540:intron 25.0%
!! TCTAGGTGGTTTAATATTTT+GGG - chr8_2:59726584-59726603 Msa1258540:intron 25.0%
! ACAAATACAGTTCATGAATT+GGG + chr8_2:59726636-59726655 None:intergenic 25.0%
! TACAAATACAGTTCATGAAT+TGG + chr8_2:59726637-59726656 None:intergenic 25.0%
! ATAATGATAACAAAGTCATG+AGG + chr8_2:59727063-59727082 None:intergenic 25.0%
! GCTTCTTCTTAAATTAAGTT+TGG - chr8_2:59727175-59727194 Msa1258540:intron 25.0%
! ATAATGAAAGGAAACAACAA+AGG + chr8_2:59727313-59727332 None:intergenic 25.0%
!!! AAGCATTGAAAGAATCTATT+AGG + chr8_2:59727345-59727364 None:intergenic 25.0%
! ATCAAAACAAGAAAAACACT+AGG + chr8_2:59727388-59727407 None:intergenic 25.0%
! AGCAGTATTCTATAATCAAA+AGG + chr8_2:59727466-59727485 None:intergenic 25.0%
!! GCTTAATATAACGATTTTGA+AGG - chr8_2:59727483-59727502 Msa1258540:intron 25.0%
! TTTAGAATTGGATTGGATGA+TGG + chr8_2:59726013-59726032 None:intergenic 30.0%
GTTCTTCTATGTTGTAAATG+TGG - chr8_2:59726208-59726227 Msa1258540:three_prime_UTR 30.0%
AAGGAATAAACCAATCGAAA+TGG + chr8_2:59726400-59726419 None:intergenic 30.0%
! CTAGGTGGTTTAATATTTTG+GGG - chr8_2:59726585-59726604 Msa1258540:intron 30.0%
! TTTCTGTGAATTTTGTGGAA+AGG - chr8_2:59726787-59726806 Msa1258540:intron 30.0%
!! CAGAACTCAACATTTTGAAA+AGG + chr8_2:59726882-59726901 None:intergenic 30.0%
! TTTAGAATTGGATTGGATGA+TGG + chr8_2:59726013-59726032 None:intergenic 30.0%
GTTCTTCTATGTTGTAAATG+TGG - chr8_2:59726208-59726227 Msa1258540:three_prime_UTR 30.0%
AAGGAATAAACCAATCGAAA+TGG + chr8_2:59726400-59726419 None:intergenic 30.0%
! CTAGGTGGTTTAATATTTTG+GGG - chr8_2:59726585-59726604 Msa1258540:intron 30.0%
! TTTCTGTGAATTTTGTGGAA+AGG - chr8_2:59726787-59726806 Msa1258540:intron 30.0%
!! CAGAACTCAACATTTTGAAA+AGG + chr8_2:59726882-59726901 None:intergenic 30.0%
TCCTTCGATCTCTGTAAAAA+TGG - chr8_2:59725969-59725988 Msa1258540:three_prime_UTR 35.0%
!! ACCATTTTTACAGAGATCGA+AGG + chr8_2:59725973-59725992 None:intergenic 35.0%
TGCACATAGGTATAGGTATA+TGG - chr8_2:59726294-59726313 Msa1258540:three_prime_UTR 35.0%
AACAACAGTTAATGTCACGT+GGG + chr8_2:59726359-59726378 None:intergenic 35.0%
CATACACTACCTTACACAAA+AGG + chr8_2:59726442-59726461 None:intergenic 35.0%
ACCTAGAATGTAACTACCTA+GGG + chr8_2:59726571-59726590 None:intergenic 35.0%
ATGAACTGTATTTGTAGAGC+AGG - chr8_2:59726641-59726660 Msa1258540:intron 35.0%
TGAACTGTATTTGTAGAGCA+GGG - chr8_2:59726642-59726661 Msa1258540:intron 35.0%
ATGATATTAGGTACCCGTTA+TGG - chr8_2:59726710-59726729 Msa1258540:CDS 35.0%
GCGTAAGCAGATTAAAAAGA+TGG - chr8_2:59726742-59726761 Msa1258540:CDS 35.0%
AGGTTGTTGCAGATAATGAA+AGG + chr8_2:59727325-59727344 None:intergenic 35.0%
! TTTTATTCGTGATTCTGCTG+AGG - chr8_2:59727416-59727435 Msa1258540:intron 35.0%
ACTGCTTAGTAGAACAATCA+TGG - chr8_2:59727517-59727536 Msa1258540:intron 35.0%
! TAGCTCTGCACAATCAATTA+AGG - chr8_2:59727567-59727586 Msa1258540:five_prime_UTR 35.0%
TCCTTCGATCTCTGTAAAAA+TGG - chr8_2:59725969-59725988 Msa1258540:three_prime_UTR 35.0%
!! ACCATTTTTACAGAGATCGA+AGG + chr8_2:59725973-59725992 None:intergenic 35.0%
TGCACATAGGTATAGGTATA+TGG - chr8_2:59726294-59726313 Msa1258540:three_prime_UTR 35.0%
AACAACAGTTAATGTCACGT+GGG + chr8_2:59726359-59726378 None:intergenic 35.0%
CATACACTACCTTACACAAA+AGG + chr8_2:59726442-59726461 None:intergenic 35.0%
ACCTAGAATGTAACTACCTA+GGG + chr8_2:59726571-59726590 None:intergenic 35.0%
ATGAACTGTATTTGTAGAGC+AGG - chr8_2:59726641-59726660 Msa1258540:intron 35.0%
TGAACTGTATTTGTAGAGCA+GGG - chr8_2:59726642-59726661 Msa1258540:intron 35.0%
ATGATATTAGGTACCCGTTA+TGG - chr8_2:59726710-59726729 Msa1258540:CDS 35.0%
GCGTAAGCAGATTAAAAAGA+TGG - chr8_2:59726742-59726761 Msa1258540:CDS 35.0%
AGGTTGTTGCAGATAATGAA+AGG + chr8_2:59727325-59727344 None:intergenic 35.0%
! TTTTATTCGTGATTCTGCTG+AGG - chr8_2:59727416-59727435 Msa1258540:intron 35.0%
ACTGCTTAGTAGAACAATCA+TGG - chr8_2:59727517-59727536 Msa1258540:intron 35.0%
!! ATTGGATTGGATGATGGAGA+AGG + chr8_2:59726007-59726026 None:intergenic 40.0%
GCAGACTAAGAGAACAAAGA+AGG - chr8_2:59726117-59726136 Msa1258540:three_prime_UTR 40.0%
ACTAAGAGAACAAAGAAGGC+TGG - chr8_2:59726121-59726140 Msa1258540:three_prime_UTR 40.0%
CAACAACAGTTAATGTCACG+TGG + chr8_2:59726360-59726379 None:intergenic 40.0%
TGTATAGCGACCATTTCGAT+TGG - chr8_2:59726387-59726406 Msa1258540:CDS 40.0%
CTTCATAAGCCAATCCAAAC+AGG - chr8_2:59726545-59726564 Msa1258540:CDS 40.0%
CACCTAGAATGTAACTACCT+AGG + chr8_2:59726572-59726591 None:intergenic 40.0%
CTAGGTAGTTACATTCTAGG+TGG - chr8_2:59726570-59726589 Msa1258540:intron 40.0%
TACGCAAACTAGCACCATAA+CGG + chr8_2:59726727-59726746 None:intergenic 40.0%
AGAGAAAGGCTGTAGGAATA+TGG - chr8_2:59726933-59726952 Msa1258540:intron 40.0%
GAGAAAGGCTGTAGGAATAT+GGG - chr8_2:59726934-59726953 Msa1258540:intron 40.0%
AGAAAGGCTGTAGGAATATG+GGG - chr8_2:59726935-59726954 Msa1258540:intron 40.0%
! GAACAATCATGGTTCTGCTT+TGG - chr8_2:59727528-59727547 Msa1258540:five_prime_UTR 40.0%
!! ATTGGATTGGATGATGGAGA+AGG + chr8_2:59726007-59726026 None:intergenic 40.0%
GCAGACTAAGAGAACAAAGA+AGG - chr8_2:59726117-59726136 Msa1258540:three_prime_UTR 40.0%
ACTAAGAGAACAAAGAAGGC+TGG - chr8_2:59726121-59726140 Msa1258540:three_prime_UTR 40.0%
CAACAACAGTTAATGTCACG+TGG + chr8_2:59726360-59726379 None:intergenic 40.0%
TGTATAGCGACCATTTCGAT+TGG - chr8_2:59726387-59726406 Msa1258540:CDS 40.0%
CTTCATAAGCCAATCCAAAC+AGG - chr8_2:59726545-59726564 Msa1258540:CDS 40.0%
CACCTAGAATGTAACTACCT+AGG + chr8_2:59726572-59726591 None:intergenic 40.0%
CTAGGTAGTTACATTCTAGG+TGG - chr8_2:59726570-59726589 Msa1258540:intron 40.0%
TACGCAAACTAGCACCATAA+CGG + chr8_2:59726727-59726746 None:intergenic 40.0%
AGAGAAAGGCTGTAGGAATA+TGG - chr8_2:59726933-59726952 Msa1258540:intron 40.0%
GAGAAAGGCTGTAGGAATAT+GGG - chr8_2:59726934-59726953 Msa1258540:intron 40.0%
AGAAAGGCTGTAGGAATATG+GGG - chr8_2:59726935-59726954 Msa1258540:intron 40.0%
! GAACAATCATGGTTCTGCTT+TGG - chr8_2:59727528-59727547 Msa1258540:five_prime_UTR 40.0%
ATCGAAGGATGTGTGAGCTA+TGG + chr8_2:59725958-59725977 None:intergenic 45.0%
CAGTTAATGTCACGTGGGTT+CGG + chr8_2:59726354-59726373 None:intergenic 45.0%
GCCCTAGGTAGTTACATTCT+AGG - chr8_2:59726567-59726586 Msa1258540:CDS 45.0%
ACGCAAACTAGCACCATAAC+GGG + chr8_2:59726726-59726745 None:intergenic 45.0%
GCAGTATGCTGTGAAGAGAA+AGG - chr8_2:59726919-59726938 Msa1258540:intron 45.0%
TGTAGGAATATGGGGATGCA+AGG - chr8_2:59726943-59726962 Msa1258540:intron 45.0%
ATCGAAGGATGTGTGAGCTA+TGG + chr8_2:59725958-59725977 None:intergenic 45.0%
CAGTTAATGTCACGTGGGTT+CGG + chr8_2:59726354-59726373 None:intergenic 45.0%
GCCCTAGGTAGTTACATTCT+AGG - chr8_2:59726567-59726586 Msa1258540:CDS 45.0%
ACGCAAACTAGCACCATAAC+GGG + chr8_2:59726726-59726745 None:intergenic 45.0%
GCAGTATGCTGTGAAGAGAA+AGG - chr8_2:59726919-59726938 Msa1258540:intron 45.0%
TGTAGGAATATGGGGATGCA+AGG - chr8_2:59726943-59726962 Msa1258540:intron 45.0%
AGGATGTGTGAGCTATGGAG+TGG + chr8_2:59725953-59725972 None:intergenic 50.0%
ACAAAGAAGGCTGGCATCGT+TGG - chr8_2:59726130-59726149 Msa1258540:three_prime_UTR 50.0%
GCTGGCATCGTTGGCAAATA+CGG - chr8_2:59726139-59726158 Msa1258540:three_prime_UTR 50.0%
TACCTAGGGCCTGTTTGGAT+TGG + chr8_2:59726557-59726576 None:intergenic 50.0%
GTAACTACCTAGGGCCTGTT+TGG + chr8_2:59726562-59726581 None:intergenic 50.0%
GCTGTGAAGAGAAAGGCTGT+AGG - chr8_2:59726926-59726945 Msa1258540:intron 50.0%
ATATGGGGATGCAAGGACTG+CGG - chr8_2:59726950-59726969 Msa1258540:intron 50.0%
GACTGCGGTAAAGTGAAAGC+AGG - chr8_2:59726965-59726984 Msa1258540:intron 50.0%
TGCGGTAAAGTGAAAGCAGG+CGG - chr8_2:59726968-59726987 Msa1258540:intron 50.0%
AGGATGTGTGAGCTATGGAG+TGG + chr8_2:59725953-59725972 None:intergenic 50.0%
ACAAAGAAGGCTGGCATCGT+TGG - chr8_2:59726130-59726149 Msa1258540:three_prime_UTR 50.0%
GCTGGCATCGTTGGCAAATA+CGG - chr8_2:59726139-59726158 Msa1258540:three_prime_UTR 50.0%
TACCTAGGGCCTGTTTGGAT+TGG + chr8_2:59726557-59726576 None:intergenic 50.0%
GTAACTACCTAGGGCCTGTT+TGG + chr8_2:59726562-59726581 None:intergenic 50.0%
GCTGTGAAGAGAAAGGCTGT+AGG - chr8_2:59726926-59726945 Msa1258540:intron 50.0%
ATATGGGGATGCAAGGACTG+CGG - chr8_2:59726950-59726969 Msa1258540:intron 50.0%
GACTGCGGTAAAGTGAAAGC+AGG - chr8_2:59726965-59726984 Msa1258540:intron 50.0%
TGCGGTAAAGTGAAAGCAGG+CGG - chr8_2:59726968-59726987 Msa1258540:intron 50.0%
GTGTGAGCTATGGAGTGGAG+TGG + chr8_2:59725948-59725967 None:intergenic 55.0%
AGCCAATCCAAACAGGCCCT+AGG - chr8_2:59726552-59726571 Msa1258540:CDS 55.0%
CTGCGTCTGCTGTGACTGTT+CGG - chr8_2:59727093-59727112 Msa1258540:intron 55.0%
! TGACTGTTCGGAGCACCATC+AGG - chr8_2:59727105-59727124 Msa1258540:intron 55.0%
TCGTGATTCTGCTGAGGCCA+TGG - chr8_2:59727422-59727441 Msa1258540:intron 55.0%
GTGTGAGCTATGGAGTGGAG+TGG + chr8_2:59725948-59725967 None:intergenic 55.0%
AGCCAATCCAAACAGGCCCT+AGG - chr8_2:59726552-59726571 Msa1258540:CDS 55.0%
CTGCGTCTGCTGTGACTGTT+CGG - chr8_2:59727093-59727112 Msa1258540:intron 55.0%
! TGACTGTTCGGAGCACCATC+AGG - chr8_2:59727105-59727124 Msa1258540:intron 55.0%
TCGTGATTCTGCTGAGGCCA+TGG - chr8_2:59727422-59727441 Msa1258540:intron 55.0%
GCTATGGAGTGGAGTGGCAG+CGG + chr8_2:59725942-59725961 None:intergenic 60.0%
! CTGTTCGGAGCACCATCAGG+AGG - chr8_2:59727108-59727127 Msa1258540:intron 60.0%
GAGCACCATCAGGAGGCTGA+GGG - chr8_2:59727115-59727134 Msa1258540:intron 60.0%
TTGCTCCCTCAGCCTCCTGA+TGG + chr8_2:59727123-59727142 None:intergenic 60.0%
GCTATGGAGTGGAGTGGCAG+CGG + chr8_2:59725942-59725961 None:intergenic 60.0%
! CTGTTCGGAGCACCATCAGG+AGG - chr8_2:59727108-59727127 Msa1258540:intron 60.0%
GAGCACCATCAGGAGGCTGA+GGG - chr8_2:59727115-59727134 Msa1258540:intron 60.0%
TTGCTCCCTCAGCCTCCTGA+TGG + chr8_2:59727123-59727142 None:intergenic 60.0%
GTGGAGTGGCAGCGGTGGAA+TGG + chr8_2:59725934-59725953 None:intergenic 65.0%
ATGGAGTGGAGTGGCAGCGG+TGG + chr8_2:59725939-59725958 None:intergenic 65.0%
! GGAGCACCATCAGGAGGCTG+AGG - chr8_2:59727114-59727133 Msa1258540:intron 65.0%
GTGGAGTGGCAGCGGTGGAA+TGG + chr8_2:59725934-59725953 None:intergenic 65.0%
ATGGAGTGGAGTGGCAGCGG+TGG + chr8_2:59725939-59725958 None:intergenic 65.0%
! GGAGCACCATCAGGAGGCTG+AGG - chr8_2:59727114-59727133 Msa1258540:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 59725922 59727589 59725922 ID=Msa1258540;Name=Msa1258540
chr8_2 mRNA 59725922 59727589 59725922 ID=Msa1258540-mRNA-1;Parent=Msa1258540;Name=Msa1258540-mRNA-1;_AED=0.40;_eAED=0.40;_QI=66|1|1|1|1|1|5|435|92
chr8_2 exon 59725922 59726420 59725922 ID=Msa1258540-mRNA-1:exon:18658;Parent=Msa1258540-mRNA-1
chr8_2 exon 59726506 59726588 59726506 ID=Msa1258540-mRNA-1:exon:18657;Parent=Msa1258540-mRNA-1
chr8_2 exon 59726703 59726791 59726703 ID=Msa1258540-mRNA-1:exon:18656;Parent=Msa1258540-mRNA-1
chr8_2 exon 59727351 59727390 59727351 ID=Msa1258540-mRNA-1:exon:18655;Parent=Msa1258540-mRNA-1
chr8_2 exon 59727521 59727589 59727521 ID=Msa1258540-mRNA-1:exon:18654;Parent=Msa1258540-mRNA-1
chr8_2 five_prime_UTR 59727524 59727589 59727524 ID=Msa1258540-mRNA-1:five_prime_utr;Parent=Msa1258540-mRNA-1
chr8_2 CDS 59727521 59727523 59727521 ID=Msa1258540-mRNA-1:cds;Parent=Msa1258540-mRNA-1
chr8_2 CDS 59727351 59727390 59727351 ID=Msa1258540-mRNA-1:cds;Parent=Msa1258540-mRNA-1
chr8_2 CDS 59726703 59726791 59726703 ID=Msa1258540-mRNA-1:cds;Parent=Msa1258540-mRNA-1
chr8_2 CDS 59726506 59726588 59726506 ID=Msa1258540-mRNA-1:cds;Parent=Msa1258540-mRNA-1
chr8_2 CDS 59726357 59726420 59726357 ID=Msa1258540-mRNA-1:cds;Parent=Msa1258540-mRNA-1
chr8_2 three_prime_UTR 59725922 59726356 59725922 ID=Msa1258540-mRNA-1:three_prime_utr;Parent=Msa1258540-mRNA-1
Gene Sequence

>Msa1258540

ATGACTAAGAGAACAAAGAAGGCTGGCATCGTTGGCAAATACGGTACCCGTTATGGTGCTAGTTTGCGTAAGCAGATTAAAAAGATGGAAGTCAGTCAGCACAGTAAATTTTTCTGTGAATTTTGTGGAAAGTATGCTGTGAAGAGAAAGGCTGTAGGAATATGGGGATGCAAGGACTGCGGTAAAGTGAAAGCAGGCGGAGCTTACACTTTGAACACTGCGTCTGCTGTGACTGTTCGGAGCACCATCAGGAGGCTGAGGGAGCAAACTGAAAGTTAA

Protein sequence

>Msa1258540

MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES*