Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0295310 | XP_003596745.1 | 99.187 | 123 | 1 | 0 | 1 | 123 | 1 | 123 | 9.95e-84 | 250 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0295310 | sp|Q9STY6|RS202_ARATH | 87.500 | 120 | 15 | 0 | 4 | 123 | 3 | 122 | 5.27e-73 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0295310 | G7IRA1 | 99.187 | 123 | 1 | 0 | 1 | 123 | 1 | 123 | 4.75e-84 | 250 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0159870 | Msa0295310 | 0.807963 | 3.909736e-50 | -8.615850e-47 |
| Msa0233550 | Msa0295310 | 0.807957 | 3.921816e-50 | -8.615850e-47 |
| Msa0295310 | Msa0377600 | 0.804656 | 1.945713e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0295310 | MtrunA17_Chr2g0317541 | 99.187 | 123 | 1 | 0 | 1 | 123 | 1 | 123 | 9.15e-88 | 250 |
| Msa0295310 | MtrunA17_Chr1g0197931 | 99.187 | 123 | 1 | 0 | 1 | 123 | 1 | 123 | 9.15e-88 | 250 |
| Msa0295310 | MtrunA17_Chr4g0018141 | 96.667 | 120 | 4 | 0 | 4 | 123 | 3 | 122 | 1.60e-83 | 239 |
| Msa0295310 | MtrunA17_Chr7g0258291 | 96.667 | 120 | 4 | 0 | 4 | 123 | 3 | 122 | 3.06e-83 | 239 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0295310 | AT3G47370.3 | 87.500 | 120 | 15 | 0 | 4 | 123 | 3 | 122 | 5.36e-74 | 216 |
| Msa0295310 | AT3G47370.2 | 87.500 | 120 | 15 | 0 | 4 | 123 | 3 | 122 | 5.36e-74 | 216 |
| Msa0295310 | AT3G47370.1 | 87.500 | 120 | 15 | 0 | 4 | 123 | 3 | 122 | 5.36e-74 | 216 |
| Msa0295310 | AT5G62300.1 | 86.290 | 124 | 16 | 1 | 1 | 123 | 1 | 124 | 5.72e-74 | 216 |
| Msa0295310 | AT5G62300.2 | 86.290 | 124 | 16 | 1 | 1 | 123 | 1 | 124 | 5.72e-74 | 216 |
| Msa0295310 | AT3G45030.1 | 86.290 | 124 | 16 | 1 | 1 | 123 | 1 | 124 | 5.72e-74 | 216 |
Find 52 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCCACCCTTCTCAAGATTT+TGG | 0.155224 | 2_3:+47863321 | None:intergenic |
| GTGCTAAGGACAAGCATCTT+AGG | 0.246369 | 2_3:-47863179 | Msa0295310:CDS |
| TCCTCCAAACCTACCTTTGT+TGG | 0.379765 | 2_3:+47863395 | None:intergenic |
| AAAACCAACAAAGGTAGGTT+TGG | 0.397934 | 2_3:-47863399 | Msa0295310:CDS |
| GTAATCTGCTTAACAACGTC+TGG | 0.415218 | 2_3:+47861395 | None:intergenic |
| TTGAACTCCGTGTGCACAAG+AGG | 0.436894 | 2_3:-47861439 | Msa0295310:CDS |
| GGTAGGTTTGGAGGATTCTC+AGG | 0.443866 | 2_3:-47863387 | Msa0295310:CDS |
| AGGAGCAGATCCACAAGATT+AGG | 0.453895 | 2_3:-47863367 | Msa0295310:CDS |
| GTTGTTAGTTTGTGCTGACT+TGG | 0.466618 | 2_3:-47863208 | Msa0295310:intron |
| AGGTTCTTCACATTACTACT+AGG | 0.481361 | 2_3:-47863128 | Msa0295310:CDS |
| GTAATGTGAAGAACCTTAGT+AGG | 0.488319 | 2_3:+47863135 | None:intergenic |
| TTGTTTCAGGTACCAACACT+TGG | 0.488993 | 2_3:-47861469 | Msa0295310:intron |
| ACCAGGTTCGATGGTGATAG+AGG | 0.489959 | 2_3:+47861373 | None:intergenic |
| CGAACCTGGTGTCGAGGTTG+AGG | 0.496706 | 2_3:-47861360 | Msa0295310:CDS |
| GAAGAATCTGCAAGCTGCTA+GGG | 0.497571 | 2_3:+47864207 | None:intergenic |
| ACCAACAAAGGTAGGTTTGG+AGG | 0.499020 | 2_3:-47863396 | Msa0295310:CDS |
| CAACGTCTGGGGAACTGTAA+AGG | 0.512765 | 2_3:+47861408 | None:intergenic |
| ACCTGTCAGGATGCCTACTA+AGG | 0.514666 | 2_3:-47863148 | Msa0295310:CDS |
| AGAAGAATCTGCAAGCTGCT+AGG | 0.514710 | 2_3:+47864206 | None:intergenic |
| ACCTCTATCACCATCGAACC+TGG | 0.519945 | 2_3:-47861374 | Msa0295310:CDS |
| GTTTGTGCTGACTTGGTTCG+TGG | 0.525514 | 2_3:-47863201 | Msa0295310:CDS |
| GCTATAAAACCAACAAAGGT+AGG | 0.526218 | 2_3:-47863404 | Msa0295310:CDS |
| TGCTAAGGACAAGCATCTTA+GGG | 0.529942 | 2_3:-47863178 | Msa0295310:CDS |
| TTAGGGTCAAGGGACCTGTC+AGG | 0.530594 | 2_3:-47863161 | Msa0295310:CDS |
| AGGAAGACCCCTTGTGGTGA+AGG | 0.532764 | 2_3:-47863108 | Msa0295310:intron |
| TCTTCCGTGATGGAAATTGA+CGG | 0.538720 | 2_3:+47864177 | None:intergenic |
| TAATCTGCTTAACAACGTCT+GGG | 0.545211 | 2_3:+47861396 | None:intergenic |
| TGACTTGGTTCGTGGTGCTA+AGG | 0.550440 | 2_3:-47863193 | Msa0295310:CDS |
| AACCTCGACACCAGGTTCGA+TGG | 0.552766 | 2_3:+47861364 | None:intergenic |
| ACCTTAGTAGGCATCCTGAC+AGG | 0.553261 | 2_3:+47863147 | None:intergenic |
| GTCACCTCAACCTCGACACC+AGG | 0.559183 | 2_3:+47861356 | None:intergenic |
| CACCATCGAACCTGGTGTCG+AGG | 0.559437 | 2_3:-47861366 | Msa0295310:CDS |
| GGACAAGCATCTTAGGGTCA+AGG | 0.562678 | 2_3:-47863172 | Msa0295310:CDS |
| CAATGACCCTCTTGTGCACA+CGG | 0.568374 | 2_3:+47861432 | None:intergenic |
| AGAGAGTGATCCTAATCTTG+TGG | 0.570336 | 2_3:+47863357 | None:intergenic |
| GACAAGCATCTTAGGGTCAA+GGG | 0.571703 | 2_3:-47863171 | Msa0295310:CDS |
| GCACGTCCAAAATCTTGAGA+AGG | 0.572845 | 2_3:-47863327 | Msa0295310:CDS |
| CAGTGGTGGACATTGATGAA+TGG | 0.574837 | 2_3:-47861216 | Msa0295310:three_prime_UTR |
| TTCAAATCTATCCCAAGTGT+TGG | 0.578144 | 2_3:+47861457 | None:intergenic |
| CACGTCCAAAATCTTGAGAA+GGG | 0.584353 | 2_3:-47863326 | Msa0295310:intron |
| TGTTTCAGGTACCAACACTT+GGG | 0.590556 | 2_3:-47861468 | Msa0295310:intron |
| TGTAATACCTTCACCACAAG+GGG | 0.605448 | 2_3:+47863101 | None:intergenic |
| TGCTGCTATAAAACCAACAA+AGG | 0.618513 | 2_3:-47863408 | Msa0295310:CDS |
| TCAAGATCAAGCGTCTGCAA+TGG | 0.624541 | 2_3:+47861334 | None:intergenic |
| ACCGCCGTCAATTTCCATCA+CGG | 0.646226 | 2_3:-47864181 | Msa0295310:five_prime_UTR |
| AATGTAATACCTTCACCACA+AGG | 0.648603 | 2_3:+47863099 | None:intergenic |
| ATGTAATACCTTCACCACAA+GGG | 0.650245 | 2_3:+47863100 | None:intergenic |
| AAACATAACAAGTTAAAACT+CGG | 0.650661 | 2_3:+47861310 | None:intergenic |
| TGAACTCCGTGTGCACAAGA+GGG | 0.668892 | 2_3:-47861438 | Msa0295310:CDS |
| ACTACTAGGAAGACCCCTTG+TGG | 0.691181 | 2_3:-47863114 | Msa0295310:CDS |
| AATCTGCTTAACAACGTCTG+GGG | 0.738536 | 2_3:+47861397 | None:intergenic |
| TCCGTGATGGAAATTGACGG+CGG | 0.742173 | 2_3:+47864180 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTATTATTGTG+TGG | - | chr2_3:47862316-47862335 | Msa0295310:intron | 10.0% |
| !!! | AATTTTTTATCTCATTTTTT+TGG | - | chr2_3:47863310-47863329 | Msa0295310:intron | 10.0% |
| !!! | TTTTTTTTTATTGTTTGCAT+TGG | - | chr2_3:47861429-47861448 | Msa0295310:CDS | 15.0% |
| !! | AGATAAAAAATTTAGACTAT+GGG | + | chr2_3:47863302-47863321 | None:intergenic | 15.0% |
| !! | AAGATTATGAATTATATTCT+GGG | + | chr2_3:47863686-47863705 | None:intergenic | 15.0% |
| !!! | GGATTAATAATTTGAGTTAT+AGG | - | chr2_3:47861284-47861303 | Msa0295310:three_prime_UTR | 20.0% |
| !! | TAACACAATTGAAAACAAAA+GGG | + | chr2_3:47861330-47861349 | None:intergenic | 20.0% |
| !!! | AATACTCAGTTATAGTTTTA+GGG | - | chr2_3:47861505-47861524 | Msa0295310:intron | 20.0% |
| !!! | TCACTAAATATGCTTATTTT+TGG | - | chr2_3:47862120-47862139 | Msa0295310:intron | 20.0% |
| !! | AATGTAATGAAAGTAGTAAT+AGG | - | chr2_3:47862539-47862558 | Msa0295310:intron | 20.0% |
| !! | AAGAATTTAGTAGAGTTATT+TGG | - | chr2_3:47862596-47862615 | Msa0295310:intron | 20.0% |
| !! | ATTTGGATTTAATGATCTAT+AGG | - | chr2_3:47862613-47862632 | Msa0295310:intron | 20.0% |
| !! | TTTGGATTTAATGATCTATA+GGG | - | chr2_3:47862614-47862633 | Msa0295310:intron | 20.0% |
| !!! | TTTTCTCAAAAATAGCAAAA+AGG | - | chr2_3:47862796-47862815 | Msa0295310:intron | 20.0% |
| !! | AATAAAAGTTTCACGATAAT+TGG | + | chr2_3:47862967-47862986 | None:intergenic | 20.0% |
| !! | TTATGTAAGTTTATCCATAA+AGG | + | chr2_3:47863112-47863131 | None:intergenic | 20.0% |
| !! | GAGATAAAAAATTTAGACTA+TGG | + | chr2_3:47863303-47863322 | None:intergenic | 20.0% |
| !!! | TTTATCTCATTTTTTTGGAA+AGG | - | chr2_3:47863315-47863334 | Msa0295310:intron | 20.0% |
| !! | CAAGATTATGAATTATATTC+TGG | + | chr2_3:47863687-47863706 | None:intergenic | 20.0% |
| !! | ATTTCAAAAATCATATCAGA+AGG | + | chr2_3:47863816-47863835 | None:intergenic | 20.0% |
| !! | AAACATAACAAGTTAAAACT+CGG | + | chr2_3:47864061-47864080 | None:intergenic | 20.0% |
| ! | GTAACACAATTGAAAACAAA+AGG | + | chr2_3:47861331-47861350 | None:intergenic | 25.0% |
| ! | TCAAAAAACATCGAACAAAA+CGG | + | chr2_3:47861355-47861374 | None:intergenic | 25.0% |
| !!! | TTTTGTTCGATGTTTTTTGA+TGG | - | chr2_3:47861355-47861374 | Msa0295310:CDS | 25.0% |
| !! | CAATACTCAGTTATAGTTTT+AGG | - | chr2_3:47861504-47861523 | Msa0295310:intron | 25.0% |
| !!! | ATACTCAGTTATAGTTTTAG+GGG | - | chr2_3:47861506-47861525 | Msa0295310:intron | 25.0% |
| ! | AAAAAATAAGCCAATCCAAA+CGG | + | chr2_3:47861532-47861551 | None:intergenic | 25.0% |
| !! | AGCTTTTATATAGCTTTTCA+AGG | - | chr2_3:47861584-47861603 | Msa0295310:intron | 25.0% |
| ! | AAAAATAAGCCAATCCAAAT+GGG | - | chr2_3:47861803-47861822 | Msa0295310:intron | 25.0% |
| !! | CATAACATCTATCTTTTGAA+CGG | + | chr2_3:47861845-47861864 | None:intergenic | 25.0% |
| ! | AAAGATAGATGTTATGTTAC+TGG | - | chr2_3:47861849-47861868 | Msa0295310:intron | 25.0% |
| !! | ATAATTTTCTCAGTTGTACT+CGG | - | chr2_3:47861922-47861941 | Msa0295310:intron | 25.0% |
| ! | TCATAAAAATGCATACAGAA+TGG | + | chr2_3:47862397-47862416 | None:intergenic | 25.0% |
| ! | AAATGGTTTCAGAAAATTCA+TGG | - | chr2_3:47862478-47862497 | Msa0295310:intron | 25.0% |
| ! | GATTTAATGAAAGTAGTGAT+AGG | - | chr2_3:47862502-47862521 | Msa0295310:intron | 25.0% |
| ! | AATTCTTTCAATAACTCACT+AGG | + | chr2_3:47862583-47862602 | None:intergenic | 25.0% |
| !!! | TTGAATCTGAATGTTTTGAT+TGG | - | chr2_3:47863355-47863374 | Msa0295310:CDS | 25.0% |
| !! | TTGATTGGTTAAAATTCACA+TGG | - | chr2_3:47863370-47863389 | Msa0295310:CDS | 25.0% |
| !! | TGATTGGTTAAAATTCACAT+GGG | - | chr2_3:47863371-47863390 | Msa0295310:CDS | 25.0% |
| ! | ATAAATAACTACACATAGCA+TGG | + | chr2_3:47863556-47863575 | None:intergenic | 25.0% |
| ! | ATGTGTAGTTATTTATCTCA+TGG | - | chr2_3:47863560-47863579 | Msa0295310:intron | 25.0% |
| !! | TATATTTCCTTTTCTTGTCA+TGG | - | chr2_3:47863619-47863638 | Msa0295310:intron | 25.0% |
| !!! | ATGACTTTTTAGAATTCACA+TGG | - | chr2_3:47863660-47863679 | Msa0295310:intron | 25.0% |
| ! | AAAATTACATTTCCATGACT+TGG | + | chr2_3:47863735-47863754 | None:intergenic | 25.0% |
| ! | GCTACAAAAATATAGGAAAT+AGG | + | chr2_3:47864091-47864110 | None:intergenic | 25.0% |
| !!! | TTCCTATATTTTTGTAGCTT+CGG | - | chr2_3:47864093-47864112 | Msa0295310:intron | 25.0% |
| !!! | TGTTTTCATTAGTTTTACAG+TGG | - | chr2_3:47864135-47864154 | Msa0295310:intron | 25.0% |
| CATTTCTATACTCATAGCAT+TGG | - | chr2_3:47861263-47861282 | Msa0295310:three_prime_UTR | 30.0% | |
| AAAAAACATCGAACAAAACG+GGG | + | chr2_3:47861353-47861372 | None:intergenic | 30.0% | |
| CAAAAAACATCGAACAAAAC+GGG | + | chr2_3:47861354-47861373 | None:intergenic | 30.0% | |
| !! | GTTTTAACGCTACTTCAATT+TGG | - | chr2_3:47861386-47861405 | Msa0295310:CDS | 30.0% |
| AAAATTCATGTGCAACTACA+TGG | + | chr2_3:47861484-47861503 | None:intergenic | 30.0% | |
| TAGTATTCATAAGCTTGTCA+AGG | - | chr2_3:47861675-47861694 | Msa0295310:intron | 30.0% | |
| CAAAAATAAGCCAATCCAAA+TGG | - | chr2_3:47861802-47861821 | Msa0295310:intron | 30.0% | |
| AAAAAGAAGCAGAACACAAA+AGG | + | chr2_3:47862352-47862371 | None:intergenic | 30.0% | |
| ATGATATATTCACAAGCTGT+TGG | - | chr2_3:47862662-47862681 | Msa0295310:intron | 30.0% | |
| CATAAGCAAAAGTCATCTAT+TGG | + | chr2_3:47862745-47862764 | None:intergenic | 30.0% | |
| TCAAAAATAGCAAAAAGGCT+AGG | - | chr2_3:47862801-47862820 | Msa0295310:intron | 30.0% | |
| AAGACTTGCAAAACACAAAA+AGG | + | chr2_3:47862867-47862886 | None:intergenic | 30.0% | |
| TGTTTGTAGATAGAACAAAC+AGG | - | chr2_3:47863029-47863048 | Msa0295310:intron | 30.0% | |
| GTTTGTAGATAGAACAAACA+GGG | - | chr2_3:47863030-47863049 | Msa0295310:intron | 30.0% | |
| AATAAGCTGTTTATCCAAAC+AGG | + | chr2_3:47863056-47863075 | None:intergenic | 30.0% | |
| TTTATCCATAAAGGCTTATC+AGG | + | chr2_3:47863103-47863122 | None:intergenic | 30.0% | |
| !! | GCTGTTTTCATAAACTATCT+TGG | - | chr2_3:47863188-47863207 | Msa0295310:CDS | 30.0% |
| ATATGGGACCCATATAAATT+TGG | + | chr2_3:47863402-47863421 | None:intergenic | 30.0% | |
| TTCAACATACTCTCTTTGAT+TGG | + | chr2_3:47863453-47863472 | None:intergenic | 30.0% | |
| AGAAACATTGCATACAATTC+AGG | + | chr2_3:47863766-47863785 | None:intergenic | 30.0% | |
| TGAAATAGTGTTCAATGTGT+AGG | - | chr2_3:47863830-47863849 | Msa0295310:intron | 30.0% | |
| AACCGAAGCTACAAAAATAT+AGG | + | chr2_3:47864098-47864117 | None:intergenic | 30.0% | |
| !! | TATTTTTGTAGCTTCGGTTT+TGG | - | chr2_3:47864099-47864118 | Msa0295310:intron | 30.0% |
| ! | ATTTTTGTAGCTTCGGTTTT+GGG | - | chr2_3:47864100-47864119 | Msa0295310:intron | 30.0% |
| !!! | TTTCATTAGTTTTACAGTGG+TGG | - | chr2_3:47864138-47864157 | Msa0295310:intron | 30.0% |
| GAGCTTATGAACTAACATGA+AGG | - | chr2_3:47861745-47861764 | Msa0295310:intron | 35.0% | |
| TGAACGGAATCCCAAAATAA+GGG | + | chr2_3:47861829-47861848 | None:intergenic | 35.0% | |
| TTGAACGGAATCCCAAAATA+AGG | + | chr2_3:47861830-47861849 | None:intergenic | 35.0% | |
| GTTACTGGCATGTTACATTA+TGG | - | chr2_3:47861864-47861883 | Msa0295310:intron | 35.0% | |
| TGCTGCTATAAAACCAACAA+AGG | - | chr2_3:47861960-47861979 | Msa0295310:intron | 35.0% | |
| GCTATAAAACCAACAAAGGT+AGG | - | chr2_3:47861964-47861983 | Msa0295310:intron | 35.0% | |
| AAAACCAACAAAGGTAGGTT+TGG | - | chr2_3:47861969-47861988 | Msa0295310:intron | 35.0% | |
| GTAATGTGAAGAACCTTAGT+AGG | + | chr2_3:47862236-47862255 | None:intergenic | 35.0% | |
| AGGTTCTTCACATTACTACT+AGG | - | chr2_3:47862240-47862259 | Msa0295310:intron | 35.0% | |
| ATGTAATACCTTCACCACAA+GGG | + | chr2_3:47862271-47862290 | None:intergenic | 35.0% | |
| AATGTAATACCTTCACCACA+AGG | + | chr2_3:47862272-47862291 | None:intergenic | 35.0% | |
| CACATAACAAGCAATAGAGT+AGG | + | chr2_3:47862452-47862471 | None:intergenic | 35.0% | |
| !! | CTACTCTATTGCTTGTTATG+TGG | - | chr2_3:47862450-47862469 | Msa0295310:intron | 35.0% |
| ! | CTTGTTATGTGGAGGTTAAA+TGG | - | chr2_3:47862461-47862480 | Msa0295310:intron | 35.0% |
| ! | AAGTCATCTATTGGAGCATT+TGG | + | chr2_3:47862736-47862755 | None:intergenic | 35.0% |
| TGTAAAGTTAGCTACAGCAA+TGG | - | chr2_3:47862763-47862782 | Msa0295310:intron | 35.0% | |
| CACTGAAAATACAACTAGAC+AGG | + | chr2_3:47862827-47862846 | None:intergenic | 35.0% | |
| CAAAAAGGAAAGAGAAGTCT+AGG | + | chr2_3:47862852-47862871 | None:intergenic | 35.0% | |
| TTGTGTTGTGCTCTATGTTA+CGG | - | chr2_3:47862938-47862957 | Msa0295310:intron | 35.0% | |
| CTTATCCTGATAAGCCTTTA+TGG | - | chr2_3:47863095-47863114 | Msa0295310:intron | 35.0% | |
| !! | CTGTTTGGATTGGCTTATTT+GGG | + | chr2_3:47863278-47863297 | None:intergenic | 35.0% |
| !! | TTGGAAAGGTATTTGCTCTT+TGG | - | chr2_3:47863329-47863348 | Msa0295310:CDS | 35.0% |
| TATATGGGTCCCATATGATT+TGG | - | chr2_3:47863406-47863425 | Msa0295310:CDS | 35.0% | |
| TAGATCCCACCAAATCATAT+GGG | + | chr2_3:47863418-47863437 | None:intergenic | 35.0% | |
| ATAGATCCCACCAAATCATA+TGG | + | chr2_3:47863419-47863438 | None:intergenic | 35.0% | |
| TGAATGCTTCTAGTCTAGTA+TGG | - | chr2_3:47863518-47863537 | Msa0295310:intron | 35.0% | |
| GAATGCTTCTAGTCTAGTAT+GGG | - | chr2_3:47863519-47863538 | Msa0295310:intron | 35.0% | |
| ATCACTTCCATGACAAGAAA+AGG | + | chr2_3:47863629-47863648 | None:intergenic | 35.0% | |
| ! | CATGGAAGTGATTTTATGTC+TGG | - | chr2_3:47863637-47863656 | Msa0295310:intron | 35.0% |
| TTCAAATCTATCCCAAGTGT+TGG | + | chr2_3:47863914-47863933 | None:intergenic | 35.0% | |
| TAATCTGCTTAACAACGTCT+GGG | + | chr2_3:47863975-47863994 | None:intergenic | 35.0% | |
| ! | TCTTCCGTGATGGAAATTGA+CGG | + | chr2_3:47861194-47861213 | None:intergenic | 40.0% |
| !!! | TTATAGTTTTAGGGGCCGTT+TGG | - | chr2_3:47861514-47861533 | Msa0295310:intron | 40.0% |
| TTGCATAAGCTCAAAACTGC+TGG | + | chr2_3:47861624-47861643 | None:intergenic | 40.0% | |
| AAATAAGGGCCCATTTGGAT+TGG | + | chr2_3:47861815-47861834 | None:intergenic | 40.0% | |
| !! | ATCCAAATGGGCCCTTATTT+TGG | - | chr2_3:47861815-47861834 | Msa0295310:intron | 40.0% |
| !!! | TCCAAATGGGCCCTTATTTT+GGG | - | chr2_3:47861816-47861835 | Msa0295310:intron | 40.0% |
| CTCAGTTGTACTCGGAAAAA+TGG | - | chr2_3:47861930-47861949 | Msa0295310:intron | 40.0% | |
| AGAGAGTGATCCTAATCTTG+TGG | + | chr2_3:47862014-47862033 | None:intergenic | 40.0% | |
| ! | AAGATTTTGGACGTGCTTAG+AGG | + | chr2_3:47862037-47862056 | None:intergenic | 40.0% |
| CACGTCCAAAATCTTGAGAA+GGG | - | chr2_3:47862042-47862061 | Msa0295310:intron | 40.0% | |
| TCCAAAATCTTGAGAAGGGT+GGG | - | chr2_3:47862046-47862065 | Msa0295310:intron | 40.0% | |
| !! | GTTGTTAGTTTGTGCTGACT+TGG | - | chr2_3:47862160-47862179 | Msa0295310:intron | 40.0% |
| TGCTAAGGACAAGCATCTTA+GGG | - | chr2_3:47862190-47862209 | Msa0295310:intron | 40.0% | |
| TGTAATACCTTCACCACAAG+GGG | + | chr2_3:47862270-47862289 | None:intergenic | 40.0% | |
| AAGCAATAGAGTAGGACTGA+AGG | + | chr2_3:47862444-47862463 | None:intergenic | 40.0% | |
| !! | CTCTATTGCTTGTTATGTGG+AGG | - | chr2_3:47862453-47862472 | Msa0295310:intron | 40.0% |
| TTCTATCTCTTCCGTTTGAG+TGG | - | chr2_3:47862901-47862920 | Msa0295310:intron | 40.0% | |
| GAAACACCTTTCCACTCAAA+CGG | + | chr2_3:47862915-47862934 | None:intergenic | 40.0% | |
| !! | CCTGTTTGGATTGGCTTATT+TGG | + | chr2_3:47863279-47863298 | None:intergenic | 40.0% |
| CCAAATAAGCCAATCCAAAC+AGG | - | chr2_3:47863276-47863295 | Msa0295310:intron | 40.0% | |
| ATTTAGACTATGGGCCTGTT+TGG | + | chr2_3:47863293-47863312 | None:intergenic | 40.0% | |
| TGGGTCCCACCAAATTTATA+TGG | - | chr2_3:47863390-47863409 | Msa0295310:CDS | 40.0% | |
| GGGTCCCACCAAATTTATAT+GGG | - | chr2_3:47863391-47863410 | Msa0295310:CDS | 40.0% | |
| GGGACCCATATAAATTTGGT+GGG | + | chr2_3:47863398-47863417 | None:intergenic | 40.0% | |
| TGGGACCCATATAAATTTGG+TGG | + | chr2_3:47863399-47863418 | None:intergenic | 40.0% | |
| TCTGATCTTGTTCCAAGTCA+TGG | - | chr2_3:47863720-47863739 | Msa0295310:intron | 40.0% | |
| ! | TTGTTTCAGGTACCAACACT+TGG | - | chr2_3:47863899-47863918 | Msa0295310:intron | 40.0% |
| ! | TGTTTCAGGTACCAACACTT+GGG | - | chr2_3:47863900-47863919 | Msa0295310:intron | 40.0% |
| AATCTGCTTAACAACGTCTG+GGG | + | chr2_3:47863974-47863993 | None:intergenic | 40.0% | |
| GTAATCTGCTTAACAACGTC+TGG | + | chr2_3:47863976-47863995 | None:intergenic | 40.0% | |
| GAAGAATCTGCAAGCTGCTA+GGG | + | chr2_3:47861164-47861183 | None:intergenic | 45.0% | |
| AGAAGAATCTGCAAGCTGCT+AGG | + | chr2_3:47861165-47861184 | None:intergenic | 45.0% | |
| !!! | GTGTGCTTTTTCTTCCGTGA+TGG | + | chr2_3:47861204-47861223 | None:intergenic | 45.0% |
| TCCCAAAATAAGGGCCCATT+TGG | + | chr2_3:47861820-47861839 | None:intergenic | 45.0% | |
| ACCAACAAAGGTAGGTTTGG+AGG | - | chr2_3:47861972-47861991 | Msa0295310:intron | 45.0% | |
| TCCTCCAAACCTACCTTTGT+TGG | + | chr2_3:47861976-47861995 | None:intergenic | 45.0% | |
| AGGAGCAGATCCACAAGATT+AGG | - | chr2_3:47862001-47862020 | Msa0295310:intron | 45.0% | |
| GCACGTCCAAAATCTTGAGA+AGG | - | chr2_3:47862041-47862060 | Msa0295310:intron | 45.0% | |
| GTCCAAAATCTTGAGAAGGG+TGG | - | chr2_3:47862045-47862064 | Msa0295310:intron | 45.0% | |
| ! | ACCCACCCTTCTCAAGATTT+TGG | + | chr2_3:47862050-47862069 | None:intergenic | 45.0% |
| GTGCTAAGGACAAGCATCTT+AGG | - | chr2_3:47862189-47862208 | Msa0295310:intron | 45.0% | |
| GACAAGCATCTTAGGGTCAA+GGG | - | chr2_3:47862197-47862216 | Msa0295310:intron | 45.0% | |
| TCTCTTCCGTTTGAGTGGAA+AGG | - | chr2_3:47862906-47862925 | Msa0295310:intron | 45.0% | |
| AGCATTAGTGTGAGCTTGTG+AGG | - | chr2_3:47862987-47863006 | Msa0295310:intron | 45.0% | |
| TGAGCTTGTGAGGTTCGTTT+CGG | - | chr2_3:47862997-47863016 | Msa0295310:intron | 45.0% | |
| TAGAACAAACAGGGCCTGTT+TGG | - | chr2_3:47863039-47863058 | Msa0295310:intron | 45.0% | |
| ! | ATGGGTCCCATATGATTTGG+TGG | - | chr2_3:47863409-47863428 | Msa0295310:CDS | 45.0% |
| !! | TGGGTCCCATATGATTTGGT+GGG | - | chr2_3:47863410-47863429 | Msa0295310:CDS | 45.0% |
| GCTTCTAGTCTAGTATGGGT+TGG | - | chr2_3:47863523-47863542 | Msa0295310:intron | 45.0% | |
| CTGATTCTGTTCTTTGCGTG+TGG | - | chr2_3:47863583-47863602 | Msa0295310:intron | 45.0% | |
| GTTCTTTGCGTGTGGTTTGA+AGG | - | chr2_3:47863591-47863610 | Msa0295310:intron | 45.0% | |
| ! | TACGAGCTTCCTCTTGTTTC+AGG | - | chr2_3:47863886-47863905 | Msa0295310:intron | 45.0% |
| ! | GTGTTGGTACCTGAAACAAG+AGG | + | chr2_3:47863898-47863917 | None:intergenic | 45.0% |
| TCAAGATCAAGCGTCTGCAA+TGG | + | chr2_3:47864037-47864056 | None:intergenic | 45.0% | |
| !! | CAGTGGTGGACATTGATGAA+TGG | - | chr2_3:47864152-47864171 | Msa0295310:intron | 45.0% |
| ACCGCCGTCAATTTCCATCA+CGG | - | chr2_3:47861187-47861206 | Msa0295310:three_prime_UTR | 50.0% | |
| ! | TCCGTGATGGAAATTGACGG+CGG | + | chr2_3:47861191-47861210 | None:intergenic | 50.0% |
| !!! | GTTTTAGGGGCCGTTTGGAT+TGG | - | chr2_3:47861519-47861538 | Msa0295310:intron | 50.0% |
| GGTAGGTTTGGAGGATTCTC+AGG | - | chr2_3:47861981-47862000 | Msa0295310:intron | 50.0% | |
| !! | GTTTGTGCTGACTTGGTTCG+TGG | - | chr2_3:47862167-47862186 | Msa0295310:intron | 50.0% |
| !! | TGACTTGGTTCGTGGTGCTA+AGG | - | chr2_3:47862175-47862194 | Msa0295310:intron | 50.0% |
| GGACAAGCATCTTAGGGTCA+AGG | - | chr2_3:47862196-47862215 | Msa0295310:intron | 50.0% | |
| ACCTGTCAGGATGCCTACTA+AGG | - | chr2_3:47862220-47862239 | Msa0295310:intron | 50.0% | |
| ACCTTAGTAGGCATCCTGAC+AGG | + | chr2_3:47862224-47862243 | None:intergenic | 50.0% | |
| ACTACTAGGAAGACCCCTTG+TGG | - | chr2_3:47862254-47862273 | Msa0295310:intron | 50.0% | |
| GAGTAGGACTGAAGGACAAG+CGG | + | chr2_3:47862436-47862455 | None:intergenic | 50.0% | |
| GACTATGGGCCTGTTTGGAT+TGG | + | chr2_3:47863288-47863307 | None:intergenic | 50.0% | |
| TTGAACTCCGTGTGCACAAG+AGG | - | chr2_3:47863929-47863948 | Msa0295310:intron | 50.0% | |
| TGAACTCCGTGTGCACAAGA+GGG | - | chr2_3:47863930-47863949 | Msa0295310:intron | 50.0% | |
| CAATGACCCTCTTGTGCACA+CGG | + | chr2_3:47863939-47863958 | None:intergenic | 50.0% | |
| CAACGTCTGGGGAACTGTAA+AGG | + | chr2_3:47863963-47863982 | None:intergenic | 50.0% | |
| ACCTCTATCACCATCGAACC+TGG | - | chr2_3:47863994-47864013 | Msa0295310:intron | 50.0% | |
| ACCAGGTTCGATGGTGATAG+AGG | + | chr2_3:47863998-47864017 | None:intergenic | 50.0% | |
| !!! | CTTCGGTTTTGGGACAAAGC+TGG | - | chr2_3:47864110-47864129 | Msa0295310:intron | 50.0% |
| TTAGGGTCAAGGGACCTGTC+AGG | - | chr2_3:47862207-47862226 | Msa0295310:intron | 55.0% | |
| AGGAAGACCCCTTGTGGTGA+AGG | - | chr2_3:47862260-47862279 | Msa0295310:intron | 55.0% | |
| AACCTCGACACCAGGTTCGA+TGG | + | chr2_3:47864007-47864026 | None:intergenic | 55.0% | |
| ! | CACCATCGAACCTGGTGTCG+AGG | - | chr2_3:47864002-47864021 | Msa0295310:intron | 60.0% |
| ! | CGAACCTGGTGTCGAGGTTG+AGG | - | chr2_3:47864008-47864027 | Msa0295310:intron | 60.0% |
| GTCACCTCAACCTCGACACC+AGG | + | chr2_3:47864015-47864034 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 47861141 | 47864249 | 47861141 | ID=Msa0295310;Name=Msa0295310 |
| chr2_3 | mRNA | 47861141 | 47864249 | 47861141 | ID=Msa0295310-mRNA-1;Parent=Msa0295310;Name=Msa0295310-mRNA-1;_AED=0.02;_eAED=0.02;_QI=98|1|1|1|0.66|0.5|4|199|123 |
| chr2_3 | exon | 47861141 | 47861482 | 47861141 | ID=Msa0295310-mRNA-1:exon:14936;Parent=Msa0295310-mRNA-1 |
| chr2_3 | exon | 47863109 | 47863222 | 47863109 | ID=Msa0295310-mRNA-1:exon:14935;Parent=Msa0295310-mRNA-1 |
| chr2_3 | exon | 47863327 | 47863455 | 47863327 | ID=Msa0295310-mRNA-1:exon:14934;Parent=Msa0295310-mRNA-1 |
| chr2_3 | exon | 47864166 | 47864249 | 47864166 | ID=Msa0295310-mRNA-1:exon:14933;Parent=Msa0295310-mRNA-1 |
| chr2_3 | five_prime_UTR | 47864166 | 47864249 | 47864166 | ID=Msa0295310-mRNA-1:five_prime_utr;Parent=Msa0295310-mRNA-1 |
| chr2_3 | five_prime_UTR | 47863442 | 47863455 | 47863442 | ID=Msa0295310-mRNA-1:five_prime_utr;Parent=Msa0295310-mRNA-1 |
| chr2_3 | CDS | 47863327 | 47863441 | 47863327 | ID=Msa0295310-mRNA-1:cds;Parent=Msa0295310-mRNA-1 |
| chr2_3 | CDS | 47863109 | 47863222 | 47863109 | ID=Msa0295310-mRNA-1:cds;Parent=Msa0295310-mRNA-1 |
| chr2_3 | CDS | 47861340 | 47861482 | 47861340 | ID=Msa0295310-mRNA-1:cds;Parent=Msa0295310-mRNA-1 |
| chr2_3 | three_prime_UTR | 47861141 | 47861339 | 47861141 | ID=Msa0295310-mRNA-1:three_prime_utr;Parent=Msa0295310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
