Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377600 | XP_013461532.1 | 100.000 | 224 | 0 | 0 | 1 | 224 | 1 | 224 | 4.09e-165 | 464 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377600 | sp|Q9M5M7|RL10_EUPES | 95.872 | 218 | 9 | 0 | 1 | 218 | 1 | 218 | 5.08e-156 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377600 | A0A072V158 | 100.000 | 224 | 0 | 0 | 1 | 224 | 1 | 224 | 1.95e-165 | 464 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0067650 | Msa0377600 | 0.803740 | 3.017635e-49 | -8.615850e-47 |
| Msa0108750 | Msa0377600 | 0.809759 | 1.614334e-50 | -8.615850e-47 |
| Msa0159870 | Msa0377600 | 0.829602 | 4.696706e-55 | -8.615850e-47 |
| Msa0377600 | Msa0527170 | 0.821344 | 4.244897e-53 | -8.615850e-47 |
| Msa0377600 | Msa0612840 | 0.843738 | 1.164996e-58 | -8.615850e-47 |
| Msa0377600 | Msa0681090 | 0.870126 | 1.846423e-66 | -8.615850e-47 |
| Msa0377600 | Msa0752240 | 0.837123 | 6.257193e-57 | -8.615850e-47 |
| Msa0377600 | Msa0956260 | -0.801341 | 9.426226e-49 | -8.615850e-47 |
| Msa0377600 | Msa0957400 | 0.801774 | 7.682701e-49 | -8.615850e-47 |
| Msa0377600 | Msa1230600 | 0.824574 | 7.496538e-54 | -8.615850e-47 |
| Msa0377600 | Msa1286400 | 0.826441 | 2.709001e-54 | -8.615850e-47 |
| Msa0377600 | Msa1328830 | 0.802856 | 4.599898e-49 | -8.615850e-47 |
| Msa0295310 | Msa0377600 | 0.804656 | 1.945713e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377600 | MtrunA17_Chr3g0128921 | 100.000 | 224 | 0 | 0 | 1 | 224 | 1 | 224 | 3.76e-169 | 464 |
| Msa0377600 | MtrunA17_Chr2g0325151 | 98.649 | 222 | 3 | 0 | 1 | 222 | 1 | 222 | 1.02e-165 | 456 |
| Msa0377600 | MtrunA17_Chr3g0108371 | 92.661 | 218 | 16 | 0 | 1 | 218 | 1 | 218 | 5.87e-152 | 421 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377600 | AT1G26910.1 | 89.450 | 218 | 23 | 0 | 1 | 218 | 1 | 218 | 2.27e-147 | 409 |
| Msa0377600 | AT1G14320.1 | 88.991 | 218 | 24 | 0 | 1 | 218 | 1 | 218 | 4.43e-146 | 406 |
| Msa0377600 | AT1G66580.1 | 87.671 | 219 | 27 | 0 | 1 | 219 | 1 | 219 | 1.77e-144 | 402 |
| Msa0377600 | AT1G26910.2 | 88.398 | 181 | 21 | 0 | 38 | 218 | 1 | 181 | 1.21e-118 | 335 |
| Msa0377600 | AT1G14320.2 | 77.660 | 94 | 19 | 1 | 127 | 218 | 31 | 124 | 1.63e-46 | 150 |
| Msa0377600 | AT1G14320.2 | 97.436 | 39 | 1 | 0 | 38 | 76 | 1 | 39 | 1.90e-20 | 84.0 |
Find 86 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATAGAGATTTGGTTTATT+TGG | 0.112420 | 3_1:-78211107 | Msa0377600:three_prime_UTR |
| GGTTCAGTTTCTTTGAAAAT+TGG | 0.221135 | 3_1:-78211007 | Msa0377600:three_prime_UTR |
| ATGCATTCCACTTGAGAGTT+AGG | 0.281116 | 3_1:-78212105 | Msa0377600:CDS |
| TTCATCCATTCCATGTTCTT+AGG | 0.295164 | 3_1:-78212081 | Msa0377600:CDS |
| ACTGGTATGAGAGGGGCTTT+TGG | 0.309142 | 3_1:-78212016 | Msa0377600:CDS |
| CTTTGACATGTATTTGTTGC+AGG | 0.312261 | 3_1:+78212141 | None:intergenic |
| CCAAATAAACCAAATCTCTA+TGG | 0.318302 | 3_1:+78211107 | None:intergenic |
| CAAATACATCAAATACTAAA+AGG | 0.325966 | 3_1:+78211153 | None:intergenic |
| ATTCGGTTATTCTAACGAAA+TGG | 0.329265 | 3_1:-78211029 | Msa0377600:three_prime_UTR |
| CAGAAACGTGACTTTGGATA+TGG | 0.332410 | 3_1:+78212307 | None:intergenic |
| ATGAGTAAATAAGAAAAGTT+TGG | 0.344705 | 3_1:+78211082 | None:intergenic |
| ATTTGCAAGTGAAGTAGATT+TGG | 0.351457 | 3_1:+78211059 | None:intergenic |
| GTTTCCTTTCTGTGTTCATC+TGG | 0.355959 | 3_1:-78212218 | Msa0377600:CDS |
| CTGTGTTCATCTGGTCAGTT+GGG | 0.370061 | 3_1:-78212209 | Msa0377600:CDS |
| ATTTGACGGTAACACCTTGC+AGG | 0.370519 | 3_1:+78212340 | None:intergenic |
| GCAGTCAGGAAAGCTCTTCC+AGG | 0.375435 | 3_1:+78211378 | None:intergenic |
| TCTGTGTTCATCTGGTCAGT+TGG | 0.393251 | 3_1:-78212210 | Msa0377600:CDS |
| AACATCATAAATCCTGATCT+TGG | 0.406497 | 3_1:+78212267 | None:intergenic |
| TCACACCATCAGGCATAATT+CGG | 0.409368 | 3_1:+78211648 | None:intergenic |
| TTTGTGCTAGAGTGGCTATT+GGG | 0.420431 | 3_1:-78211979 | Msa0377600:CDS |
| TTTCATGTGCGGGAGCTGAT+AGG | 0.426261 | 3_1:-78212045 | Msa0377600:CDS |
| TTGCAGCTTCTTGGATGCCA+TGG | 0.430564 | 3_1:-78211420 | Msa0377600:intron |
| TTCGGTTATTCTAACGAAAT+GGG | 0.432522 | 3_1:-78211028 | Msa0377600:three_prime_UTR |
| ACTTGCAAATCTCACTGATT+CGG | 0.435309 | 3_1:-78211046 | Msa0377600:three_prime_UTR |
| TGCTAGAGTGGCTATTGGGC+AGG | 0.435686 | 3_1:-78211975 | Msa0377600:CDS |
| GTTTGTGCTAGAGTGGCTAT+TGG | 0.453432 | 3_1:-78211980 | Msa0377600:CDS |
| CATGTCAAAGTTTGCAGGAA+AGG | 0.453517 | 3_1:-78212128 | Msa0377600:CDS |
| CAGCTGTAATGATGAGGCTT+AGG | 0.455136 | 3_1:-78211355 | Msa0377600:exon |
| TGCATTCCACTTGAGAGTTA+GGG | 0.456036 | 3_1:-78212104 | Msa0377600:CDS |
| AGCAGCTTCAAGTGCCTCAC+TGG | 0.456981 | 3_1:+78212171 | None:intergenic |
| ATGGCTTGTTCTTAATTTGA+CGG | 0.461186 | 3_1:+78212326 | None:intergenic |
| CCACGGCAGAAACGTGACTT+TGG | 0.463875 | 3_1:+78212301 | None:intergenic |
| GGAAAGCTCTTCCAGGTTGA+CGG | 0.466465 | 3_1:+78211385 | None:intergenic |
| CATCATTACAGCTGGCAGTC+AGG | 0.468158 | 3_1:+78211364 | None:intergenic |
| AAATACATGTCAAAGTTTGC+AGG | 0.470834 | 3_1:-78212133 | Msa0377600:CDS |
| ACCTTGGCATTCACACCATC+AGG | 0.473018 | 3_1:+78211638 | None:intergenic |
| TTGAGGAAAAGAAAGAATCA+AGG | 0.477618 | 3_1:+78210885 | None:intergenic |
| TCTTCTTTCTGTTCGTTGCA+AGG | 0.480717 | 3_1:-78211951 | Msa0377600:CDS |
| TAAATCCTGATCTTGGGATC+AGG | 0.483079 | 3_1:+78212274 | None:intergenic |
| ACATCATAAATCCTGATCTT+GGG | 0.486665 | 3_1:+78212268 | None:intergenic |
| TCTTGGATGCCATGGACCAT+TGG | 0.496449 | 3_1:-78211412 | Msa0377600:CDS |
| CCATTGGCCAACCGTCAACC+TGG | 0.501077 | 3_1:-78211396 | Msa0377600:CDS |
| AACAAGATGCTTTCATGTGC+GGG | 0.504380 | 3_1:-78212055 | Msa0377600:CDS |
| GTTTCTTTGAAAATTGGTGA+TGG | 0.506009 | 3_1:-78211001 | Msa0377600:three_prime_UTR |
| GTGTTCCTGATCCCAAGATC+AGG | 0.511204 | 3_1:-78212279 | Msa0377600:CDS |
| CGTGCTAAGTTCAAGTTCCC+TGG | 0.513242 | 3_1:-78211893 | Msa0377600:CDS |
| CCAGGTTGACGGTTGGCCAA+TGG | 0.514937 | 3_1:+78211396 | None:intergenic |
| GTCAAAAGATCATTGTTAGC+AGG | 0.521890 | 3_1:-78211868 | Msa0377600:CDS |
| CAACAACAGCCATCATGCTC+AGG | 0.528429 | 3_1:-78211927 | Msa0377600:CDS |
| ACAAACATCAAACGCAGCCA+TGG | 0.530225 | 3_1:-78213640 | Msa0377600:exon |
| AGATCATTGTTAGCAGGAAG+TGG | 0.531763 | 3_1:-78211862 | Msa0377600:intron |
| CTAAGCCTCATCATTACAGC+TGG | 0.532221 | 3_1:+78211356 | None:intergenic |
| GACGGTTGGCCAATGGTCCA+TGG | 0.540431 | 3_1:+78211403 | None:intergenic |
| CTCAATTCTATATTGCAGAA+AGG | 0.544288 | 3_1:-78213669 | None:intergenic |
| AAGATCAGGATTTATGATGT+TGG | 0.544933 | 3_1:-78212265 | Msa0377600:CDS |
| ACTCAAGGTTGTCTTCAAAA+CGG | 0.549505 | 3_1:+78211220 | None:intergenic |
| GGAGAGCCTCCTGAGCATGA+TGG | 0.562150 | 3_1:+78211918 | None:intergenic |
| ACAAGGTGTTTGTGCTAGAG+TGG | 0.563189 | 3_1:-78211987 | Msa0377600:CDS |
| GGCTTCAGACTGGTATGAGA+GGG | 0.563519 | 3_1:-78212024 | Msa0377600:CDS |
| TCATCTGGTCAGTTGGGAGA+AGG | 0.572889 | 3_1:-78212203 | Msa0377600:CDS |
| CTGACCAGATGAACACAGAA+AGG | 0.573863 | 3_1:+78212214 | None:intergenic |
| TGAGGAAAAGAAAGAATCAA+GGG | 0.574614 | 3_1:+78210886 | None:intergenic |
| AGCTCTTCCAGGTTGACGGT+TGG | 0.574684 | 3_1:+78211389 | None:intergenic |
| GATGAACCCTAACTCTCAAG+TGG | 0.578245 | 3_1:+78212098 | None:intergenic |
| GATGTTGGTATGAAGAAGAA+AGG | 0.580932 | 3_1:-78212250 | Msa0377600:CDS |
| CCAAAGTCACGTTTCTGCCG+TGG | 0.586608 | 3_1:-78212301 | Msa0377600:CDS |
| TCTATATTGCAGAAAGGAGA+CGG | 0.586941 | 3_1:-78213663 | None:intergenic |
| CAAGATTAATCATCAACTCA+AGG | 0.593908 | 3_1:+78211205 | None:intergenic |
| GTGAGGCACTTGAAGCTGCT+AGG | 0.594487 | 3_1:-78212168 | Msa0377600:CDS |
| CAACAAGATGCTTTCATGTG+CGG | 0.597854 | 3_1:-78212056 | Msa0377600:CDS |
| TTGATCCTAAGAACATGGAA+TGG | 0.602625 | 3_1:+78212076 | None:intergenic |
| TTAACTTCAGATAATCAGCT+CGG | 0.606395 | 3_1:+78211681 | None:intergenic |
| AGGCTTCAGACTGGTATGAG+AGG | 0.607126 | 3_1:-78212025 | Msa0377600:CDS |
| CAACAGCCATCATGCTCAGG+AGG | 0.612805 | 3_1:-78211924 | Msa0377600:CDS |
| TCTTGTTGATCCTAAGAACA+TGG | 0.613434 | 3_1:+78212071 | None:intergenic |
| CAAACATCAAACGCAGCCAT+GGG | 0.614965 | 3_1:-78213639 | Msa0377600:exon |
| CAGGGAACTTGAACTTAGCA+CGG | 0.624584 | 3_1:+78211894 | None:intergenic |
| GACTGCCAGCTGTAATGATG+AGG | 0.627181 | 3_1:-78211361 | Msa0377600:CDS |
| GGAGCTGATAGGCTTCAGAC+TGG | 0.660599 | 3_1:-78212034 | Msa0377600:CDS |
| ACTCTAGCACAAACACCTTG+TGG | 0.661898 | 3_1:+78211989 | None:intergenic |
| GAGAACCGAATTATGCCTGA+TGG | 0.679163 | 3_1:-78211653 | Msa0377600:CDS |
| GCCTGATGGTGTGAATGCCA+AGG | 0.685041 | 3_1:-78211639 | Msa0377600:intron |
| GCTTCAGACTGGTATGAGAG+GGG | 0.693964 | 3_1:-78212023 | Msa0377600:CDS |
| GAAGGAAAATGTGTCCAGTG+AGG | 0.706232 | 3_1:-78212185 | Msa0377600:CDS |
| TCTTGGGATCAGGAACACCA+CGG | 0.737353 | 3_1:+78212284 | None:intergenic |
| GGAACTTGAACTTAGCACGG+CGG | 0.787728 | 3_1:+78211897 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAACAAATTATATATTTTT+AGG | + | chr3_1:78211612-78211631 | None:intergenic | 10.0% |
| !! | AAAAATGAAATAAGAATTCA+TGG | + | chr3_1:78211020-78211039 | None:intergenic | 15.0% |
| !!! | TTATTTTGTATTTGTGATTT+AGG | - | chr3_1:78211148-78211167 | Msa0377600:three_prime_UTR | 15.0% |
| !! | TCGTAAATATAATGAAATTT+CGG | + | chr3_1:78211197-78211216 | None:intergenic | 15.0% |
| !!! | TTTTATTTTCTGTTTTGATT+TGG | - | chr3_1:78211232-78211251 | Msa0377600:three_prime_UTR | 15.0% |
| !! | TTTAACAAATTATGAAACAT+TGG | + | chr3_1:78211365-78211384 | None:intergenic | 15.0% |
| !!! | ATCATGTTTGTTTTATTTAT+AGG | - | chr3_1:78212185-78212204 | Msa0377600:CDS | 15.0% |
| !!! | TTATTTGTATCATTTTAGTT+TGG | - | chr3_1:78212985-78213004 | Msa0377600:intron | 15.0% |
| !!! | ATTTTAGTTTGGAATATATT+GGG | - | chr3_1:78212996-78213015 | Msa0377600:intron | 15.0% |
| !!! | ATTAATCTTGTATTTTGTTA+TGG | - | chr3_1:78213357-78213376 | Msa0377600:intron | 15.0% |
| !! | AATGAATGAAAATATGAGAA+GGG | + | chr3_1:78210955-78210974 | None:intergenic | 20.0% |
| !! | AAATGAATGAAAATATGAGA+AGG | + | chr3_1:78210956-78210975 | None:intergenic | 20.0% |
| !! | TATTTGTGATTTAGGAATTA+GGG | - | chr3_1:78211156-78211175 | Msa0377600:three_prime_UTR | 20.0% |
| !!! | AACCAAATAAGTTTTGATTA+AGG | - | chr3_1:78211395-78211414 | Msa0377600:CDS | 20.0% |
| !!! | ACCAAATAAGTTTTGATTAA+GGG | - | chr3_1:78211396-78211415 | Msa0377600:CDS | 20.0% |
| !!! | GGTTTTAAAAAAACATGTTA+AGG | + | chr3_1:78211779-78211798 | None:intergenic | 20.0% |
| !! | CCACTATAAAAAATCAAAAA+GGG | + | chr3_1:78211800-78211819 | None:intergenic | 20.0% |
| !! | ACCACTATAAAAAATCAAAA+AGG | + | chr3_1:78211801-78211820 | None:intergenic | 20.0% |
| !! | CTAGTATTCATAATACATAA+TGG | - | chr3_1:78211943-78211962 | Msa0377600:CDS | 20.0% |
| !! | TAATGAACACAAATGAAAAT+AGG | + | chr3_1:78212012-78212031 | None:intergenic | 20.0% |
| !! | TCATTATTCATTTGTAATTG+TGG | - | chr3_1:78212026-78212045 | Msa0377600:CDS | 20.0% |
| !!! | AGATTCATTTTTTTGTCTAT+TGG | - | chr3_1:78212143-78212162 | Msa0377600:CDS | 20.0% |
| !!! | AAAACATGGATTAAAGTAAA+AGG | + | chr3_1:78212796-78212815 | None:intergenic | 20.0% |
| !! | CAATGAATATAGTTAAAACA+TGG | + | chr3_1:78212810-78212829 | None:intergenic | 20.0% |
| !!! | CATTTTAGTTTGGAATATAT+TGG | - | chr3_1:78212995-78213014 | Msa0377600:intron | 20.0% |
| !! | CAAATACATCAAATACTAAA+AGG | + | chr3_1:78213399-78213418 | None:intergenic | 20.0% |
| !! | ATGAGTAAATAAGAAAAGTT+TGG | + | chr3_1:78213470-78213489 | None:intergenic | 20.0% |
| ! | AAAATATGAGAAGGGAATTA+GGG | + | chr3_1:78210947-78210966 | None:intergenic | 25.0% |
| !! | AGATATGATGATGTTTACAT+TGG | - | chr3_1:78211045-78211064 | Msa0377600:three_prime_UTR | 25.0% |
| ! | TTGAAAAAGAGATCAGAAAT+TGG | + | chr3_1:78211107-78211126 | None:intergenic | 25.0% |
| ! | GTATTTGTGATTTAGGAATT+AGG | - | chr3_1:78211155-78211174 | Msa0377600:three_prime_UTR | 25.0% |
| ! | ACCCTTAATCAAAACTTATT+TGG | + | chr3_1:78211400-78211419 | None:intergenic | 25.0% |
| ! | AAAAAACAAGCCAATTCAAA+CGG | - | chr3_1:78211584-78211603 | Msa0377600:intron | 25.0% |
| !! | AGGTTTATACGATAATTTTG+TGG | - | chr3_1:78211671-78211690 | Msa0377600:CDS | 25.0% |
| !!! | CCCTTTTTGATTTTTTATAG+TGG | - | chr3_1:78211797-78211816 | Msa0377600:intron | 25.0% |
| !!! | TGATTTTTTATAGTGGTAGA+CGG | - | chr3_1:78211804-78211823 | Msa0377600:intron | 25.0% |
| !!! | CTTGTTTTCATTTGTCATTA+TGG | - | chr3_1:78212101-78212120 | Msa0377600:CDS | 25.0% |
| !!! | TGTTGTTTAAATGCTTTTTC+AGG | - | chr3_1:78212828-78212847 | Msa0377600:intron | 25.0% |
| !!! | GTTGTTTAAATGCTTTTTCA+GGG | - | chr3_1:78212829-78212848 | Msa0377600:intron | 25.0% |
| !!! | TTGTTTAAATGCTTTTTCAG+GGG | - | chr3_1:78212830-78212849 | Msa0377600:intron | 25.0% |
| ! | AATCTGTTTGAACACTAAAT+TGG | - | chr3_1:78213041-78213060 | Msa0377600:intron | 25.0% |
| !!! | GTTAGTTTTGTCTAAGTAAT+TGG | - | chr3_1:78213076-78213095 | Msa0377600:intron | 25.0% |
| ! | AAAAATGTTCCATAGAGATT+TGG | - | chr3_1:78213433-78213452 | Msa0377600:intron | 25.0% |
| GAAAATATGAGAAGGGAATT+AGG | + | chr3_1:78210948-78210967 | None:intergenic | 30.0% | |
| CAAACTTAAGCTAATCCAAA+CGG | + | chr3_1:78211423-78211442 | None:intergenic | 30.0% | |
| TATGAGGATACAACTTTAGT+TGG | - | chr3_1:78211501-78211520 | Msa0377600:intron | 30.0% | |
| !!! | ATGCTTTTGAAATCGACATT+AGG | - | chr3_1:78211651-78211670 | Msa0377600:CDS | 30.0% |
| ACATAAAACACGACAAACAA+TGG | + | chr3_1:78211868-78211887 | None:intergenic | 30.0% | |
| !! | TTTTATTTATAGGACCTGCA+AGG | - | chr3_1:78212195-78212214 | Msa0377600:CDS | 30.0% |
| !! | ATGGCTTGTTCTTAATTTGA+CGG | + | chr3_1:78212226-78212245 | None:intergenic | 30.0% |
| ACATCATAAATCCTGATCTT+GGG | + | chr3_1:78212284-78212303 | None:intergenic | 30.0% | |
| AACATCATAAATCCTGATCT+TGG | + | chr3_1:78212285-78212304 | None:intergenic | 30.0% | |
| AAGATCAGGATTTATGATGT+TGG | - | chr3_1:78212284-78212303 | Msa0377600:CDS | 30.0% | |
| AAATACATGTCAAAGTTTGC+AGG | - | chr3_1:78212416-78212435 | Msa0377600:intron | 30.0% | |
| ! | TGCTAACAATGATCTTTTGA+CGG | + | chr3_1:78212682-78212701 | None:intergenic | 30.0% |
| GTGGTAAGTATTTGTTCTAT+TGG | - | chr3_1:78212706-78212725 | Msa0377600:intron | 30.0% | |
| ACAAATCTACATAGGATACA+GGG | + | chr3_1:78212755-78212774 | None:intergenic | 30.0% | |
| TACAAATCTACATAGGATAC+AGG | + | chr3_1:78212756-78212775 | None:intergenic | 30.0% | |
| TCCTATGTAGATTTGTAGTA+TGG | - | chr3_1:78212759-78212778 | Msa0377600:intron | 30.0% | |
| CCTATGTAGATTTGTAGTAT+GGG | - | chr3_1:78212760-78212779 | Msa0377600:intron | 30.0% | |
| TTTGTAGTATGGGAATACTT+TGG | - | chr3_1:78212770-78212789 | Msa0377600:intron | 30.0% | |
| TTAACTTCAGATAATCAGCT+CGG | + | chr3_1:78212871-78212890 | None:intergenic | 30.0% | |
| AGAAACAAATATCCAACATG+CGG | + | chr3_1:78212966-78212985 | None:intergenic | 30.0% | |
| ! | AAAAGAGCTTGTAAGTTGAA+AGG | + | chr3_1:78213102-78213121 | None:intergenic | 30.0% |
| CAAGATTAATCATCAACTCA+AGG | + | chr3_1:78213347-78213366 | None:intergenic | 30.0% | |
| CCAAATAAACCAAATCTCTA+TGG | + | chr3_1:78213445-78213464 | None:intergenic | 30.0% | |
| ! | CCATAGAGATTTGGTTTATT+TGG | - | chr3_1:78213442-78213461 | Msa0377600:intron | 30.0% |
| ATTTGCAAGTGAAGTAGATT+TGG | + | chr3_1:78213493-78213512 | None:intergenic | 30.0% | |
| ATTCGGTTATTCTAACGAAA+TGG | - | chr3_1:78213520-78213539 | Msa0377600:intron | 30.0% | |
| TTCGGTTATTCTAACGAAAT+GGG | - | chr3_1:78213521-78213540 | Msa0377600:intron | 30.0% | |
| ! | GGTTCAGTTTCTTTGAAAAT+TGG | - | chr3_1:78213542-78213561 | Msa0377600:intron | 30.0% |
| ! | GTTTCTTTGAAAATTGGTGA+TGG | - | chr3_1:78213548-78213567 | Msa0377600:intron | 30.0% |
| AAGAGATCAGAAATTGGAAG+AGG | + | chr3_1:78211101-78211120 | None:intergenic | 35.0% | |
| CTATGAGAAAACAGCTTATG+AGG | - | chr3_1:78211485-78211504 | Msa0377600:intron | 35.0% | |
| !!! | TTTTTAGGGTCCGTTTGAAT+TGG | + | chr3_1:78211597-78211616 | None:intergenic | 35.0% |
| GAACTAGCAAACAATGACAA+TGG | + | chr3_1:78211697-78211716 | None:intergenic | 35.0% | |
| ! | TGTTTGCTAGTTCTTGTGTA+TGG | - | chr3_1:78211704-78211723 | Msa0377600:intron | 35.0% |
| ! | GTTCTTGTGTATGGATTGTA+AGG | - | chr3_1:78211713-78211732 | Msa0377600:intron | 35.0% |
| TTAAGGTATGAAGAGTGGTT+AGG | + | chr3_1:78211762-78211781 | None:intergenic | 35.0% | |
| ACATGTTAAGGTATGAAGAG+TGG | + | chr3_1:78211767-78211786 | None:intergenic | 35.0% | |
| AAGCATGCTACGATACATAT+TGG | + | chr3_1:78211909-78211928 | None:intergenic | 35.0% | |
| GATGTTGGTATGAAGAAGAA+AGG | - | chr3_1:78212299-78212318 | Msa0377600:CDS | 35.0% | |
| ! | CTTTGACATGTATTTGTTGC+AGG | + | chr3_1:78212411-78212430 | None:intergenic | 35.0% |
| TTCATCCATTCCATGTTCTT+AGG | - | chr3_1:78212468-78212487 | Msa0377600:intron | 35.0% | |
| TTGATCCTAAGAACATGGAA+TGG | + | chr3_1:78212476-78212495 | None:intergenic | 35.0% | |
| TCTTGTTGATCCTAAGAACA+TGG | + | chr3_1:78212481-78212500 | None:intergenic | 35.0% | |
| GTCAAAAGATCATTGTTAGC+AGG | - | chr3_1:78212681-78212700 | Msa0377600:intron | 35.0% | |
| CCCATACTACAAATCTACAT+AGG | + | chr3_1:78212763-78212782 | None:intergenic | 35.0% | |
| ! | TTTGTGATTTTGCAGCTTCT+TGG | - | chr3_1:78213120-78213139 | Msa0377600:intron | 35.0% |
| ACTCAAGGTTGTCTTCAAAA+CGG | + | chr3_1:78213332-78213351 | None:intergenic | 35.0% | |
| ! | ACTTGCAAATCTCACTGATT+CGG | - | chr3_1:78213503-78213522 | Msa0377600:intron | 35.0% |
| ! | TAGGGTTTTACTTCTTCCCA+TGG | + | chr3_1:78210929-78210948 | None:intergenic | 40.0% |
| !!! | GTTTTGATTAAGGGTCCGTT+TGG | - | chr3_1:78211405-78211424 | Msa0377600:CDS | 40.0% |
| GGTTGCTTATCGATGAATTC+AGG | - | chr3_1:78211734-78211753 | Msa0377600:intron | 40.0% | |
| TTTATAGTGGTAGACGGTAG+TGG | - | chr3_1:78211810-78211829 | Msa0377600:intron | 40.0% | |
| CAGAAACGTGACTTTGGATA+TGG | + | chr3_1:78212245-78212264 | None:intergenic | 40.0% | |
| TAAATCCTGATCTTGGGATC+AGG | + | chr3_1:78212278-78212297 | None:intergenic | 40.0% | |
| GTTTCCTTTCTGTGTTCATC+TGG | - | chr3_1:78212331-78212350 | Msa0377600:CDS | 40.0% | |
| CATGTCAAAGTTTGCAGGAA+AGG | - | chr3_1:78212421-78212440 | Msa0377600:intron | 40.0% | |
| ATGCATTCCACTTGAGAGTT+AGG | - | chr3_1:78212444-78212463 | Msa0377600:intron | 40.0% | |
| TGCATTCCACTTGAGAGTTA+GGG | - | chr3_1:78212445-78212464 | Msa0377600:intron | 40.0% | |
| CAACAAGATGCTTTCATGTG+CGG | - | chr3_1:78212493-78212512 | Msa0377600:intron | 40.0% | |
| AACAAGATGCTTTCATGTGC+GGG | - | chr3_1:78212494-78212513 | Msa0377600:intron | 40.0% | |
| TTTGTGCTAGAGTGGCTATT+GGG | - | chr3_1:78212570-78212589 | Msa0377600:intron | 40.0% | |
| TCTTCTTTCTGTTCGTTGCA+AGG | - | chr3_1:78212598-78212617 | Msa0377600:intron | 40.0% | |
| AGATCATTGTTAGCAGGAAG+TGG | - | chr3_1:78212687-78212706 | Msa0377600:intron | 40.0% | |
| TCACACCATCAGGCATAATT+CGG | + | chr3_1:78212904-78212923 | None:intergenic | 40.0% | |
| TATGCAGCTTCACATTACCT+TGG | + | chr3_1:78212930-78212949 | None:intergenic | 40.0% | |
| GAATTCATTGTACCGCATGT+TGG | - | chr3_1:78212951-78212970 | Msa0377600:intron | 40.0% | |
| ACAAACATCAAACGCAGCCA+TGG | - | chr3_1:78210909-78210928 | Msa0377600:three_prime_UTR | 45.0% | |
| CAAACATCAAACGCAGCCAT+GGG | - | chr3_1:78210910-78210929 | Msa0377600:three_prime_UTR | 45.0% | |
| GTCAGGGTGAATCAGAAACA+CGG | + | chr3_1:78211072-78211091 | None:intergenic | 45.0% | |
| TTGGAAGAGGTTGTCTGTCA+GGG | + | chr3_1:78211088-78211107 | None:intergenic | 45.0% | |
| ATTGGAAGAGGTTGTCTGTC+AGG | + | chr3_1:78211089-78211108 | None:intergenic | 45.0% | |
| TGGCTCATACAATACAAGCG+TGG | + | chr3_1:78211848-78211867 | None:intergenic | 45.0% | |
| ATTTGACGGTAACACCTTGC+AGG | + | chr3_1:78212212-78212231 | None:intergenic | 45.0% | |
| CTGACCAGATGAACACAGAA+AGG | + | chr3_1:78212338-78212357 | None:intergenic | 45.0% | |
| TCTGTGTTCATCTGGTCAGT+TGG | - | chr3_1:78212339-78212358 | Msa0377600:CDS | 45.0% | |
| CTGTGTTCATCTGGTCAGTT+GGG | - | chr3_1:78212340-78212359 | Msa0377600:CDS | 45.0% | |
| GAAGGAAAATGTGTCCAGTG+AGG | - | chr3_1:78212364-78212383 | Msa0377600:intron | 45.0% | |
| GATGAACCCTAACTCTCAAG+TGG | + | chr3_1:78212454-78212473 | None:intergenic | 45.0% | |
| ACTCTAGCACAAACACCTTG+TGG | + | chr3_1:78212563-78212582 | None:intergenic | 45.0% | |
| ! | ACAAGGTGTTTGTGCTAGAG+TGG | - | chr3_1:78212562-78212581 | Msa0377600:intron | 45.0% |
| GTTTGTGCTAGAGTGGCTAT+TGG | - | chr3_1:78212569-78212588 | Msa0377600:intron | 45.0% | |
| CAGGGAACTTGAACTTAGCA+CGG | + | chr3_1:78212658-78212677 | None:intergenic | 45.0% | |
| ! | CAATGATCTTTTGACGGCCA+GGG | + | chr3_1:78212676-78212695 | None:intergenic | 45.0% |
| ! | ACAATGATCTTTTGACGGCC+AGG | + | chr3_1:78212677-78212696 | None:intergenic | 45.0% |
| GAGAACCGAATTATGCCTGA+TGG | - | chr3_1:78212896-78212915 | Msa0377600:intron | 45.0% | |
| CTAAGCCTCATCATTACAGC+TGG | + | chr3_1:78213196-78213215 | None:intergenic | 45.0% | |
| CAGCTGTAATGATGAGGCTT+AGG | - | chr3_1:78213194-78213213 | Msa0377600:intron | 45.0% | |
| !!! | AAACAAATTATATATTTTTA+GGG | + | chr3_1:78211611-78211630 | None:intergenic | 5.0% |
| TCTTGGGATCAGGAACACCA+CGG | + | chr3_1:78212268-78212287 | None:intergenic | 50.0% | |
| GTGTTCCTGATCCCAAGATC+AGG | - | chr3_1:78212270-78212289 | Msa0377600:CDS | 50.0% | |
| TCATCTGGTCAGTTGGGAGA+AGG | - | chr3_1:78212346-78212365 | Msa0377600:intron | 50.0% | |
| TTTCATGTGCGGGAGCTGAT+AGG | - | chr3_1:78212504-78212523 | Msa0377600:intron | 50.0% | |
| AGGCTTCAGACTGGTATGAG+AGG | - | chr3_1:78212524-78212543 | Msa0377600:intron | 50.0% | |
| GGCTTCAGACTGGTATGAGA+GGG | - | chr3_1:78212525-78212544 | Msa0377600:intron | 50.0% | |
| GCTTCAGACTGGTATGAGAG+GGG | - | chr3_1:78212526-78212545 | Msa0377600:intron | 50.0% | |
| ! | ACTGGTATGAGAGGGGCTTT+TGG | - | chr3_1:78212533-78212552 | Msa0377600:intron | 50.0% |
| CAACAACAGCCATCATGCTC+AGG | - | chr3_1:78212622-78212641 | Msa0377600:intron | 50.0% | |
| GGAACTTGAACTTAGCACGG+CGG | + | chr3_1:78212655-78212674 | None:intergenic | 50.0% | |
| ! | CGTGCTAAGTTCAAGTTCCC+TGG | - | chr3_1:78212656-78212675 | Msa0377600:intron | 50.0% |
| ACCTTGGCATTCACACCATC+AGG | + | chr3_1:78212914-78212933 | None:intergenic | 50.0% | |
| TTGCAGCTTCTTGGATGCCA+TGG | - | chr3_1:78213129-78213148 | Msa0377600:intron | 50.0% | |
| TCTTGGATGCCATGGACCAT+TGG | - | chr3_1:78213137-78213156 | Msa0377600:intron | 50.0% | |
| ! | GGAAAGCTCTTCCAGGTTGA+CGG | + | chr3_1:78213167-78213186 | None:intergenic | 50.0% |
| CATCATTACAGCTGGCAGTC+AGG | + | chr3_1:78213188-78213207 | None:intergenic | 50.0% | |
| GACTGCCAGCTGTAATGATG+AGG | - | chr3_1:78213188-78213207 | Msa0377600:intron | 50.0% | |
| CCACGGCAGAAACGTGACTT+TGG | + | chr3_1:78212251-78212270 | None:intergenic | 55.0% | |
| CCAAAGTCACGTTTCTGCCG+TGG | - | chr3_1:78212248-78212267 | Msa0377600:CDS | 55.0% | |
| AGCAGCTTCAAGTGCCTCAC+TGG | + | chr3_1:78212381-78212400 | None:intergenic | 55.0% | |
| ! | GTGAGGCACTTGAAGCTGCT+AGG | - | chr3_1:78212381-78212400 | Msa0377600:intron | 55.0% |
| GGAGCTGATAGGCTTCAGAC+TGG | - | chr3_1:78212515-78212534 | Msa0377600:intron | 55.0% | |
| !! | GGGGCTTTTGGAAAGCCACA+AGG | - | chr3_1:78212545-78212564 | Msa0377600:intron | 55.0% |
| TGCTAGAGTGGCTATTGGGC+AGG | - | chr3_1:78212574-78212593 | Msa0377600:intron | 55.0% | |
| CAACAGCCATCATGCTCAGG+AGG | - | chr3_1:78212625-78212644 | Msa0377600:intron | 55.0% | |
| ! | GCCTGATGGTGTGAATGCCA+AGG | - | chr3_1:78212910-78212929 | Msa0377600:intron | 55.0% |
| ! | AGCTCTTCCAGGTTGACGGT+TGG | + | chr3_1:78213163-78213182 | None:intergenic | 55.0% |
| GCAGTCAGGAAAGCTCTTCC+AGG | + | chr3_1:78213174-78213193 | None:intergenic | 55.0% | |
| GGAGAGCCTCCTGAGCATGA+TGG | + | chr3_1:78212634-78212653 | None:intergenic | 60.0% | |
| ! | GACGGTTGGCCAATGGTCCA+TGG | + | chr3_1:78213149-78213168 | None:intergenic | 60.0% |
| ! | CCAGGTTGACGGTTGGCCAA+TGG | + | chr3_1:78213156-78213175 | None:intergenic | 60.0% |
| CCATTGGCCAACCGTCAACC+TGG | - | chr3_1:78213153-78213172 | Msa0377600:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 78210895 | 78213676 | 78210895 | ID=Msa0377600;Name=Msa0377600 |
| chr3_1 | mRNA | 78210895 | 78213676 | 78210895 | ID=Msa0377600-mRNA-1;Parent=Msa0377600;Name=Msa0377600-mRNA-1;_AED=0.06;_eAED=0.06;_QI=33|1|1|1|0.66|1|4|461|224 |
| chr3_1 | exon | 78210895 | 78211436 | 78210895 | ID=Msa0377600-mRNA-1:exon:18797;Parent=Msa0377600-mRNA-1 |
| chr3_1 | exon | 78211640 | 78211721 | 78211640 | ID=Msa0377600-mRNA-1:exon:18796;Parent=Msa0377600-mRNA-1 |
| chr3_1 | exon | 78211863 | 78212364 | 78211863 | ID=Msa0377600-mRNA-1:exon:18795;Parent=Msa0377600-mRNA-1 |
| chr3_1 | exon | 78213634 | 78213676 | 78213634 | ID=Msa0377600-mRNA-1:exon:18794;Parent=Msa0377600-mRNA-1 |
| chr3_1 | five_prime_UTR | 78213644 | 78213676 | 78213644 | ID=Msa0377600-mRNA-1:five_prime_utr;Parent=Msa0377600-mRNA-1 |
| chr3_1 | CDS | 78213634 | 78213643 | 78213634 | ID=Msa0377600-mRNA-1:cds;Parent=Msa0377600-mRNA-1 |
| chr3_1 | CDS | 78211863 | 78212364 | 78211863 | ID=Msa0377600-mRNA-1:cds;Parent=Msa0377600-mRNA-1 |
| chr3_1 | CDS | 78211640 | 78211721 | 78211640 | ID=Msa0377600-mRNA-1:cds;Parent=Msa0377600-mRNA-1 |
| chr3_1 | CDS | 78211356 | 78211436 | 78211356 | ID=Msa0377600-mRNA-1:cds;Parent=Msa0377600-mRNA-1 |
| chr3_1 | three_prime_UTR | 78210895 | 78211355 | 78210895 | ID=Msa0377600-mRNA-1:three_prime_utr;Parent=Msa0377600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
