AlfalfaGEDB | Msa0377600

M. sativa cultivar zhongmu-4 / Msa0377600

KEGG: K02866
GO: -
PFAM: PF00252.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0377600	XP_013461532.1	100.000	224	0	0	1	224	1	224	4.09e-165	464

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0377600	sp\|Q9M5M7\|RL10_EUPES	95.872	218	9	0	1	218	1	218	5.08e-156	434

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0377600	A0A072V158	100.000	224	0	0	1	224	1	224	1.95e-165	464

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0067650	Msa0377600	0.803740	3.017635e-49	-8.615850e-47
Msa0108750	Msa0377600	0.809759	1.614334e-50	-8.615850e-47
Msa0159870	Msa0377600	0.829602	4.696706e-55	-8.615850e-47
Msa0295310	Msa0377600	0.804656	1.945713e-49	-8.615850e-47
Msa0377600	Msa0527170	0.821344	4.244897e-53	-8.615850e-47
Msa0377600	Msa0612840	0.843738	1.164996e-58	-8.615850e-47
Msa0377600	Msa0681090	0.870126	1.846423e-66	-8.615850e-47
Msa0377600	Msa0752240	0.837123	6.257193e-57	-8.615850e-47
Msa0377600	Msa0956260	-0.801341	9.426226e-49	-8.615850e-47
Msa0377600	Msa0957400	0.801774	7.682701e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0377600	MtrunA17_Chr3g0128921	100.000	224	0	1	224	1	224	3.76e-169	464
Msa0377600	MtrunA17_Chr2g0325151	98.649	222	3	1	222	1	222	1.02e-165	456
Msa0377600	MtrunA17_Chr3g0108371	92.661	218	16	1	218	1	218	5.87e-152	421

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0377600	AT1G26910.1	89.450	218	23	0	1	218	1	218	2.27e-147	409
Msa0377600	AT1G14320.1	88.991	218	24	0	1	218	1	218	4.43e-146	406
Msa0377600	AT1G66580.1	87.671	219	27	0	1	219	1	219	1.77e-144	402
Msa0377600	AT1G26910.2	88.398	181	21	0	38	218	1	181	1.21e-118	335
Msa0377600	AT1G14320.2	77.660	94	19	1	127	218	31	124	1.63e-46	150
Msa0377600	AT1G14320.2	97.436	39	1	0	38	76	1	39	1.90e-20	84.0

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Find 86 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATACATGTCAAAGTTTGC+AGG	0.470834	3_1:-78212133	Msa0377600:CDS
AACAAGATGCTTTCATGTGC+GGG	0.504380	3_1:-78212055	Msa0377600:CDS
AACATCATAAATCCTGATCT+TGG	0.406497	3_1:+78212267	None:intergenic
AAGATCAGGATTTATGATGT+TGG	0.544933	3_1:-78212265	Msa0377600:CDS
ACAAACATCAAACGCAGCCA+TGG	0.530225	3_1:-78213640	Msa0377600:exon
ACAAGGTGTTTGTGCTAGAG+TGG	0.563189	3_1:-78211987	Msa0377600:CDS
ACATCATAAATCCTGATCTT+GGG	0.486665	3_1:+78212268	None:intergenic
ACCTTGGCATTCACACCATC+AGG	0.473018	3_1:+78211638	None:intergenic
ACTCAAGGTTGTCTTCAAAA+CGG	0.549505	3_1:+78211220	None:intergenic
ACTCTAGCACAAACACCTTG+TGG	0.661898	3_1:+78211989	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAATATGAGAAGGGAATT+AGG	+	chr3_1:78210948-78210967	None:intergenic	30.0%
CAAACTTAAGCTAATCCAAA+CGG	+	chr3_1:78211423-78211442	None:intergenic	30.0%
TATGAGGATACAACTTTAGT+TGG	-	chr3_1:78211501-78211520	Msa0377600:intron	30.0%
ACATAAAACACGACAAACAA+TGG	+	chr3_1:78211868-78211887	None:intergenic	30.0%
ACATCATAAATCCTGATCTT+GGG	+	chr3_1:78212284-78212303	None:intergenic	30.0%
AACATCATAAATCCTGATCT+TGG	+	chr3_1:78212285-78212304	None:intergenic	30.0%
AAGATCAGGATTTATGATGT+TGG	-	chr3_1:78212284-78212303	Msa0377600:CDS	30.0%
AAATACATGTCAAAGTTTGC+AGG	-	chr3_1:78212416-78212435	Msa0377600:intron	30.0%
GTGGTAAGTATTTGTTCTAT+TGG	-	chr3_1:78212706-78212725	Msa0377600:intron	30.0%
ACAAATCTACATAGGATACA+GGG	+	chr3_1:78212755-78212774	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	78210895	78213676	78210895	ID=Msa0377600;Name=Msa0377600
chr3_1	mRNA	78210895	78213676	78210895	ID=Msa0377600-mRNA-1;Parent=Msa0377600;Name=Msa0377600-mRNA-1;_AED=0.06;_eAED=0.06;_QI=33\|1\|1\|1\|0.66\|1\|4\|461\|224
chr3_1	exon	78210895	78211436	78210895	ID=Msa0377600-mRNA-1:exon:18797;Parent=Msa0377600-mRNA-1
chr3_1	exon	78211640	78211721	78211640	ID=Msa0377600-mRNA-1:exon:18796;Parent=Msa0377600-mRNA-1
chr3_1	exon	78211863	78212364	78211863	ID=Msa0377600-mRNA-1:exon:18795;Parent=Msa0377600-mRNA-1
chr3_1	exon	78213634	78213676	78213634	ID=Msa0377600-mRNA-1:exon:18794;Parent=Msa0377600-mRNA-1
chr3_1	five_prime_UTR	78213644	78213676	78213644	ID=Msa0377600-mRNA-1:five_prime_utr;Parent=Msa0377600-mRNA-1
chr3_1	CDS	78213634	78213643	78213634	ID=Msa0377600-mRNA-1:cds;Parent=Msa0377600-mRNA-1
chr3_1	CDS	78211863	78212364	78211863	ID=Msa0377600-mRNA-1:cds;Parent=Msa0377600-mRNA-1
chr3_1	CDS	78211640	78211721	78211640	ID=Msa0377600-mRNA-1:cds;Parent=Msa0377600-mRNA-1
chr3_1	CDS	78211356	78211436	78211356	ID=Msa0377600-mRNA-1:cds;Parent=Msa0377600-mRNA-1
chr3_1	three_prime_UTR	78210895	78211355	78210895	ID=Msa0377600-mRNA-1:three_prime_utr;Parent=Msa0377600-mRNA-1

Gene Sequence

>Msa0377600

ATGGGAAGAAGACCTGCAAGGTGTTACCGTCAAATTAAGAACAAGCCATATCCAAAGTCACGTTTCTGCCGTGGTGTTCCTGATCCCAAGATCAGGATTTATGATGTTGGTATGAAGAAGAAAGGTGTTGATGAGTTTCCTTTCTGTGTTCATCTGGTCAGTTGGGAGAAGGAAAATGTGTCCAGTGAGGCACTTGAAGCTGCTAGGATTGCCTGCAACAAATACATGTCAAAGTTTGCAGGAAAGGATGCATTCCACTTGAGAGTTAGGGTTCATCCATTCCATGTTCTTAGGATCAACAAGATGCTTTCATGTGCGGGAGCTGATAGGCTTCAGACTGGTATGAGAGGGGCTTTTGGAAAGCCACAAGGTGTTTGTGCTAGAGTGGCTATTGGGCAGGTTCTTCTTTCTGTTCGTTGCAAGGACAACAACAGCCATCATGCTCAGGAGGCTCTCCGCCGTGCTAAGTTCAAGTTCCCTGGCCGTCAAAAGATCATTGTTAGCAGGAAGTGGGGATTCACTAAGATTAACCGAGCTGATTATCTGAAGTTAAAGTCTGAGAACCGAATTATGCCTGATGGTGTGAATGCCAAGCTTCTTGGATGCCATGGACCATTGGCCAACCGTCAACCTGGAAGAGCTTTCCTGACTGCCAGCTGTAATGATGAGGCTTAG

Protein sequence

>Msa0377600

MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDNNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKINRADYLKLKSENRIMPDGVNAKLLGCHGPLANRQPGRAFLTASCNDEA*