AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0377600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0377600 MtrunA17_Chr3g0128921 100.000 224 0 0 1 224 1 224 3.76e-169 464
Msa0377600 MtrunA17_Chr2g0325151 98.649 222 3 0 1 222 1 222 1.02e-165 456
Msa0377600 MtrunA17_Chr3g0108371 92.661 218 16 0 1 218 1 218 5.87e-152 421
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0377600 AT1G26910.1 89.450 218 23 0 1 218 1 218 2.27e-147 409
Msa0377600 AT1G14320.1 88.991 218 24 0 1 218 1 218 4.43e-146 406
Msa0377600 AT1G66580.1 87.671 219 27 0 1 219 1 219 1.77e-144 402
Msa0377600 AT1G26910.2 88.398 181 21 0 38 218 1 181 1.21e-118 335
Msa0377600 AT1G14320.2 77.660 94 19 1 127 218 31 124 1.63e-46 150
Msa0377600 AT1G14320.2 97.436 39 1 0 38 76 1 39 1.90e-20 84.0

Find 86 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATAGAGATTTGGTTTATT+TGG 0.112420 3_1:-78211107 Msa0377600:three_prime_UTR
GGTTCAGTTTCTTTGAAAAT+TGG 0.221135 3_1:-78211007 Msa0377600:three_prime_UTR
ATGCATTCCACTTGAGAGTT+AGG 0.281116 3_1:-78212105 Msa0377600:CDS
TTCATCCATTCCATGTTCTT+AGG 0.295164 3_1:-78212081 Msa0377600:CDS
ACTGGTATGAGAGGGGCTTT+TGG 0.309142 3_1:-78212016 Msa0377600:CDS
CTTTGACATGTATTTGTTGC+AGG 0.312261 3_1:+78212141 None:intergenic
CCAAATAAACCAAATCTCTA+TGG 0.318302 3_1:+78211107 None:intergenic
CAAATACATCAAATACTAAA+AGG 0.325966 3_1:+78211153 None:intergenic
ATTCGGTTATTCTAACGAAA+TGG 0.329265 3_1:-78211029 Msa0377600:three_prime_UTR
CAGAAACGTGACTTTGGATA+TGG 0.332410 3_1:+78212307 None:intergenic
ATGAGTAAATAAGAAAAGTT+TGG 0.344705 3_1:+78211082 None:intergenic
ATTTGCAAGTGAAGTAGATT+TGG 0.351457 3_1:+78211059 None:intergenic
GTTTCCTTTCTGTGTTCATC+TGG 0.355959 3_1:-78212218 Msa0377600:CDS
CTGTGTTCATCTGGTCAGTT+GGG 0.370061 3_1:-78212209 Msa0377600:CDS
ATTTGACGGTAACACCTTGC+AGG 0.370519 3_1:+78212340 None:intergenic
GCAGTCAGGAAAGCTCTTCC+AGG 0.375435 3_1:+78211378 None:intergenic
TCTGTGTTCATCTGGTCAGT+TGG 0.393251 3_1:-78212210 Msa0377600:CDS
AACATCATAAATCCTGATCT+TGG 0.406497 3_1:+78212267 None:intergenic
TCACACCATCAGGCATAATT+CGG 0.409368 3_1:+78211648 None:intergenic
TTTGTGCTAGAGTGGCTATT+GGG 0.420431 3_1:-78211979 Msa0377600:CDS
TTTCATGTGCGGGAGCTGAT+AGG 0.426261 3_1:-78212045 Msa0377600:CDS
TTGCAGCTTCTTGGATGCCA+TGG 0.430564 3_1:-78211420 Msa0377600:intron
TTCGGTTATTCTAACGAAAT+GGG 0.432522 3_1:-78211028 Msa0377600:three_prime_UTR
ACTTGCAAATCTCACTGATT+CGG 0.435309 3_1:-78211046 Msa0377600:three_prime_UTR
TGCTAGAGTGGCTATTGGGC+AGG 0.435686 3_1:-78211975 Msa0377600:CDS
GTTTGTGCTAGAGTGGCTAT+TGG 0.453432 3_1:-78211980 Msa0377600:CDS
CATGTCAAAGTTTGCAGGAA+AGG 0.453517 3_1:-78212128 Msa0377600:CDS
CAGCTGTAATGATGAGGCTT+AGG 0.455136 3_1:-78211355 Msa0377600:exon
TGCATTCCACTTGAGAGTTA+GGG 0.456036 3_1:-78212104 Msa0377600:CDS
AGCAGCTTCAAGTGCCTCAC+TGG 0.456981 3_1:+78212171 None:intergenic
ATGGCTTGTTCTTAATTTGA+CGG 0.461186 3_1:+78212326 None:intergenic
CCACGGCAGAAACGTGACTT+TGG 0.463875 3_1:+78212301 None:intergenic
GGAAAGCTCTTCCAGGTTGA+CGG 0.466465 3_1:+78211385 None:intergenic
CATCATTACAGCTGGCAGTC+AGG 0.468158 3_1:+78211364 None:intergenic
AAATACATGTCAAAGTTTGC+AGG 0.470834 3_1:-78212133 Msa0377600:CDS
ACCTTGGCATTCACACCATC+AGG 0.473018 3_1:+78211638 None:intergenic
TTGAGGAAAAGAAAGAATCA+AGG 0.477618 3_1:+78210885 None:intergenic
TCTTCTTTCTGTTCGTTGCA+AGG 0.480717 3_1:-78211951 Msa0377600:CDS
TAAATCCTGATCTTGGGATC+AGG 0.483079 3_1:+78212274 None:intergenic
ACATCATAAATCCTGATCTT+GGG 0.486665 3_1:+78212268 None:intergenic
TCTTGGATGCCATGGACCAT+TGG 0.496449 3_1:-78211412 Msa0377600:CDS
CCATTGGCCAACCGTCAACC+TGG 0.501077 3_1:-78211396 Msa0377600:CDS
AACAAGATGCTTTCATGTGC+GGG 0.504380 3_1:-78212055 Msa0377600:CDS
GTTTCTTTGAAAATTGGTGA+TGG 0.506009 3_1:-78211001 Msa0377600:three_prime_UTR
GTGTTCCTGATCCCAAGATC+AGG 0.511204 3_1:-78212279 Msa0377600:CDS
CGTGCTAAGTTCAAGTTCCC+TGG 0.513242 3_1:-78211893 Msa0377600:CDS
CCAGGTTGACGGTTGGCCAA+TGG 0.514937 3_1:+78211396 None:intergenic
GTCAAAAGATCATTGTTAGC+AGG 0.521890 3_1:-78211868 Msa0377600:CDS
CAACAACAGCCATCATGCTC+AGG 0.528429 3_1:-78211927 Msa0377600:CDS
ACAAACATCAAACGCAGCCA+TGG 0.530225 3_1:-78213640 Msa0377600:exon
AGATCATTGTTAGCAGGAAG+TGG 0.531763 3_1:-78211862 Msa0377600:intron
CTAAGCCTCATCATTACAGC+TGG 0.532221 3_1:+78211356 None:intergenic
GACGGTTGGCCAATGGTCCA+TGG 0.540431 3_1:+78211403 None:intergenic
CTCAATTCTATATTGCAGAA+AGG 0.544288 3_1:-78213669 None:intergenic
AAGATCAGGATTTATGATGT+TGG 0.544933 3_1:-78212265 Msa0377600:CDS
ACTCAAGGTTGTCTTCAAAA+CGG 0.549505 3_1:+78211220 None:intergenic
GGAGAGCCTCCTGAGCATGA+TGG 0.562150 3_1:+78211918 None:intergenic
ACAAGGTGTTTGTGCTAGAG+TGG 0.563189 3_1:-78211987 Msa0377600:CDS
GGCTTCAGACTGGTATGAGA+GGG 0.563519 3_1:-78212024 Msa0377600:CDS
TCATCTGGTCAGTTGGGAGA+AGG 0.572889 3_1:-78212203 Msa0377600:CDS
CTGACCAGATGAACACAGAA+AGG 0.573863 3_1:+78212214 None:intergenic
TGAGGAAAAGAAAGAATCAA+GGG 0.574614 3_1:+78210886 None:intergenic
AGCTCTTCCAGGTTGACGGT+TGG 0.574684 3_1:+78211389 None:intergenic
GATGAACCCTAACTCTCAAG+TGG 0.578245 3_1:+78212098 None:intergenic
GATGTTGGTATGAAGAAGAA+AGG 0.580932 3_1:-78212250 Msa0377600:CDS
CCAAAGTCACGTTTCTGCCG+TGG 0.586608 3_1:-78212301 Msa0377600:CDS
TCTATATTGCAGAAAGGAGA+CGG 0.586941 3_1:-78213663 None:intergenic
CAAGATTAATCATCAACTCA+AGG 0.593908 3_1:+78211205 None:intergenic
GTGAGGCACTTGAAGCTGCT+AGG 0.594487 3_1:-78212168 Msa0377600:CDS
CAACAAGATGCTTTCATGTG+CGG 0.597854 3_1:-78212056 Msa0377600:CDS
TTGATCCTAAGAACATGGAA+TGG 0.602625 3_1:+78212076 None:intergenic
TTAACTTCAGATAATCAGCT+CGG 0.606395 3_1:+78211681 None:intergenic
AGGCTTCAGACTGGTATGAG+AGG 0.607126 3_1:-78212025 Msa0377600:CDS
CAACAGCCATCATGCTCAGG+AGG 0.612805 3_1:-78211924 Msa0377600:CDS
TCTTGTTGATCCTAAGAACA+TGG 0.613434 3_1:+78212071 None:intergenic
CAAACATCAAACGCAGCCAT+GGG 0.614965 3_1:-78213639 Msa0377600:exon
CAGGGAACTTGAACTTAGCA+CGG 0.624584 3_1:+78211894 None:intergenic
GACTGCCAGCTGTAATGATG+AGG 0.627181 3_1:-78211361 Msa0377600:CDS
GGAGCTGATAGGCTTCAGAC+TGG 0.660599 3_1:-78212034 Msa0377600:CDS
ACTCTAGCACAAACACCTTG+TGG 0.661898 3_1:+78211989 None:intergenic
GAGAACCGAATTATGCCTGA+TGG 0.679163 3_1:-78211653 Msa0377600:CDS
GCCTGATGGTGTGAATGCCA+AGG 0.685041 3_1:-78211639 Msa0377600:intron
GCTTCAGACTGGTATGAGAG+GGG 0.693964 3_1:-78212023 Msa0377600:CDS
GAAGGAAAATGTGTCCAGTG+AGG 0.706232 3_1:-78212185 Msa0377600:CDS
TCTTGGGATCAGGAACACCA+CGG 0.737353 3_1:+78212284 None:intergenic
GGAACTTGAACTTAGCACGG+CGG 0.787728 3_1:+78211897 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAACAAATTATATATTTTT+AGG + chr3_1:78211612-78211631 None:intergenic 10.0%
!! AAAAATGAAATAAGAATTCA+TGG + chr3_1:78211020-78211039 None:intergenic 15.0%
!!! TTATTTTGTATTTGTGATTT+AGG - chr3_1:78211148-78211167 Msa0377600:three_prime_UTR 15.0%
!! TCGTAAATATAATGAAATTT+CGG + chr3_1:78211197-78211216 None:intergenic 15.0%
!!! TTTTATTTTCTGTTTTGATT+TGG - chr3_1:78211232-78211251 Msa0377600:three_prime_UTR 15.0%
!! TTTAACAAATTATGAAACAT+TGG + chr3_1:78211365-78211384 None:intergenic 15.0%
!!! ATCATGTTTGTTTTATTTAT+AGG - chr3_1:78212185-78212204 Msa0377600:CDS 15.0%
!!! TTATTTGTATCATTTTAGTT+TGG - chr3_1:78212985-78213004 Msa0377600:intron 15.0%
!!! ATTTTAGTTTGGAATATATT+GGG - chr3_1:78212996-78213015 Msa0377600:intron 15.0%
!!! ATTAATCTTGTATTTTGTTA+TGG - chr3_1:78213357-78213376 Msa0377600:intron 15.0%
!! AATGAATGAAAATATGAGAA+GGG + chr3_1:78210955-78210974 None:intergenic 20.0%
!! AAATGAATGAAAATATGAGA+AGG + chr3_1:78210956-78210975 None:intergenic 20.0%
!! TATTTGTGATTTAGGAATTA+GGG - chr3_1:78211156-78211175 Msa0377600:three_prime_UTR 20.0%
!!! AACCAAATAAGTTTTGATTA+AGG - chr3_1:78211395-78211414 Msa0377600:CDS 20.0%
!!! ACCAAATAAGTTTTGATTAA+GGG - chr3_1:78211396-78211415 Msa0377600:CDS 20.0%
!!! GGTTTTAAAAAAACATGTTA+AGG + chr3_1:78211779-78211798 None:intergenic 20.0%
!! CCACTATAAAAAATCAAAAA+GGG + chr3_1:78211800-78211819 None:intergenic 20.0%
!! ACCACTATAAAAAATCAAAA+AGG + chr3_1:78211801-78211820 None:intergenic 20.0%
!! CTAGTATTCATAATACATAA+TGG - chr3_1:78211943-78211962 Msa0377600:CDS 20.0%
!! TAATGAACACAAATGAAAAT+AGG + chr3_1:78212012-78212031 None:intergenic 20.0%
!! TCATTATTCATTTGTAATTG+TGG - chr3_1:78212026-78212045 Msa0377600:CDS 20.0%
!!! AGATTCATTTTTTTGTCTAT+TGG - chr3_1:78212143-78212162 Msa0377600:CDS 20.0%
!!! AAAACATGGATTAAAGTAAA+AGG + chr3_1:78212796-78212815 None:intergenic 20.0%
!! CAATGAATATAGTTAAAACA+TGG + chr3_1:78212810-78212829 None:intergenic 20.0%
!!! CATTTTAGTTTGGAATATAT+TGG - chr3_1:78212995-78213014 Msa0377600:intron 20.0%
!! CAAATACATCAAATACTAAA+AGG + chr3_1:78213399-78213418 None:intergenic 20.0%
!! ATGAGTAAATAAGAAAAGTT+TGG + chr3_1:78213470-78213489 None:intergenic 20.0%
! AAAATATGAGAAGGGAATTA+GGG + chr3_1:78210947-78210966 None:intergenic 25.0%
!! AGATATGATGATGTTTACAT+TGG - chr3_1:78211045-78211064 Msa0377600:three_prime_UTR 25.0%
! TTGAAAAAGAGATCAGAAAT+TGG + chr3_1:78211107-78211126 None:intergenic 25.0%
! GTATTTGTGATTTAGGAATT+AGG - chr3_1:78211155-78211174 Msa0377600:three_prime_UTR 25.0%
! ACCCTTAATCAAAACTTATT+TGG + chr3_1:78211400-78211419 None:intergenic 25.0%
! AAAAAACAAGCCAATTCAAA+CGG - chr3_1:78211584-78211603 Msa0377600:intron 25.0%
!! AGGTTTATACGATAATTTTG+TGG - chr3_1:78211671-78211690 Msa0377600:CDS 25.0%
!!! CCCTTTTTGATTTTTTATAG+TGG - chr3_1:78211797-78211816 Msa0377600:intron 25.0%
!!! TGATTTTTTATAGTGGTAGA+CGG - chr3_1:78211804-78211823 Msa0377600:intron 25.0%
!!! CTTGTTTTCATTTGTCATTA+TGG - chr3_1:78212101-78212120 Msa0377600:CDS 25.0%
!!! TGTTGTTTAAATGCTTTTTC+AGG - chr3_1:78212828-78212847 Msa0377600:intron 25.0%
!!! GTTGTTTAAATGCTTTTTCA+GGG - chr3_1:78212829-78212848 Msa0377600:intron 25.0%
!!! TTGTTTAAATGCTTTTTCAG+GGG - chr3_1:78212830-78212849 Msa0377600:intron 25.0%
! AATCTGTTTGAACACTAAAT+TGG - chr3_1:78213041-78213060 Msa0377600:intron 25.0%
!!! GTTAGTTTTGTCTAAGTAAT+TGG - chr3_1:78213076-78213095 Msa0377600:intron 25.0%
! AAAAATGTTCCATAGAGATT+TGG - chr3_1:78213433-78213452 Msa0377600:intron 25.0%
GAAAATATGAGAAGGGAATT+AGG + chr3_1:78210948-78210967 None:intergenic 30.0%
CAAACTTAAGCTAATCCAAA+CGG + chr3_1:78211423-78211442 None:intergenic 30.0%
TATGAGGATACAACTTTAGT+TGG - chr3_1:78211501-78211520 Msa0377600:intron 30.0%
!!! ATGCTTTTGAAATCGACATT+AGG - chr3_1:78211651-78211670 Msa0377600:CDS 30.0%
ACATAAAACACGACAAACAA+TGG + chr3_1:78211868-78211887 None:intergenic 30.0%
!! TTTTATTTATAGGACCTGCA+AGG - chr3_1:78212195-78212214 Msa0377600:CDS 30.0%
!! ATGGCTTGTTCTTAATTTGA+CGG + chr3_1:78212226-78212245 None:intergenic 30.0%
ACATCATAAATCCTGATCTT+GGG + chr3_1:78212284-78212303 None:intergenic 30.0%
AACATCATAAATCCTGATCT+TGG + chr3_1:78212285-78212304 None:intergenic 30.0%
AAGATCAGGATTTATGATGT+TGG - chr3_1:78212284-78212303 Msa0377600:CDS 30.0%
AAATACATGTCAAAGTTTGC+AGG - chr3_1:78212416-78212435 Msa0377600:intron 30.0%
! TGCTAACAATGATCTTTTGA+CGG + chr3_1:78212682-78212701 None:intergenic 30.0%
GTGGTAAGTATTTGTTCTAT+TGG - chr3_1:78212706-78212725 Msa0377600:intron 30.0%
ACAAATCTACATAGGATACA+GGG + chr3_1:78212755-78212774 None:intergenic 30.0%
TACAAATCTACATAGGATAC+AGG + chr3_1:78212756-78212775 None:intergenic 30.0%
TCCTATGTAGATTTGTAGTA+TGG - chr3_1:78212759-78212778 Msa0377600:intron 30.0%
CCTATGTAGATTTGTAGTAT+GGG - chr3_1:78212760-78212779 Msa0377600:intron 30.0%
TTTGTAGTATGGGAATACTT+TGG - chr3_1:78212770-78212789 Msa0377600:intron 30.0%
TTAACTTCAGATAATCAGCT+CGG + chr3_1:78212871-78212890 None:intergenic 30.0%
AGAAACAAATATCCAACATG+CGG + chr3_1:78212966-78212985 None:intergenic 30.0%
! AAAAGAGCTTGTAAGTTGAA+AGG + chr3_1:78213102-78213121 None:intergenic 30.0%
CAAGATTAATCATCAACTCA+AGG + chr3_1:78213347-78213366 None:intergenic 30.0%
CCAAATAAACCAAATCTCTA+TGG + chr3_1:78213445-78213464 None:intergenic 30.0%
! CCATAGAGATTTGGTTTATT+TGG - chr3_1:78213442-78213461 Msa0377600:intron 30.0%
ATTTGCAAGTGAAGTAGATT+TGG + chr3_1:78213493-78213512 None:intergenic 30.0%
ATTCGGTTATTCTAACGAAA+TGG - chr3_1:78213520-78213539 Msa0377600:intron 30.0%
TTCGGTTATTCTAACGAAAT+GGG - chr3_1:78213521-78213540 Msa0377600:intron 30.0%
! GGTTCAGTTTCTTTGAAAAT+TGG - chr3_1:78213542-78213561 Msa0377600:intron 30.0%
! GTTTCTTTGAAAATTGGTGA+TGG - chr3_1:78213548-78213567 Msa0377600:intron 30.0%
AAGAGATCAGAAATTGGAAG+AGG + chr3_1:78211101-78211120 None:intergenic 35.0%
CTATGAGAAAACAGCTTATG+AGG - chr3_1:78211485-78211504 Msa0377600:intron 35.0%
!!! TTTTTAGGGTCCGTTTGAAT+TGG + chr3_1:78211597-78211616 None:intergenic 35.0%
GAACTAGCAAACAATGACAA+TGG + chr3_1:78211697-78211716 None:intergenic 35.0%
! TGTTTGCTAGTTCTTGTGTA+TGG - chr3_1:78211704-78211723 Msa0377600:intron 35.0%
! GTTCTTGTGTATGGATTGTA+AGG - chr3_1:78211713-78211732 Msa0377600:intron 35.0%
TTAAGGTATGAAGAGTGGTT+AGG + chr3_1:78211762-78211781 None:intergenic 35.0%
ACATGTTAAGGTATGAAGAG+TGG + chr3_1:78211767-78211786 None:intergenic 35.0%
AAGCATGCTACGATACATAT+TGG + chr3_1:78211909-78211928 None:intergenic 35.0%
GATGTTGGTATGAAGAAGAA+AGG - chr3_1:78212299-78212318 Msa0377600:CDS 35.0%
! CTTTGACATGTATTTGTTGC+AGG + chr3_1:78212411-78212430 None:intergenic 35.0%
TTCATCCATTCCATGTTCTT+AGG - chr3_1:78212468-78212487 Msa0377600:intron 35.0%
TTGATCCTAAGAACATGGAA+TGG + chr3_1:78212476-78212495 None:intergenic 35.0%
TCTTGTTGATCCTAAGAACA+TGG + chr3_1:78212481-78212500 None:intergenic 35.0%
GTCAAAAGATCATTGTTAGC+AGG - chr3_1:78212681-78212700 Msa0377600:intron 35.0%
CCCATACTACAAATCTACAT+AGG + chr3_1:78212763-78212782 None:intergenic 35.0%
! TTTGTGATTTTGCAGCTTCT+TGG - chr3_1:78213120-78213139 Msa0377600:intron 35.0%
ACTCAAGGTTGTCTTCAAAA+CGG + chr3_1:78213332-78213351 None:intergenic 35.0%
! ACTTGCAAATCTCACTGATT+CGG - chr3_1:78213503-78213522 Msa0377600:intron 35.0%
! TAGGGTTTTACTTCTTCCCA+TGG + chr3_1:78210929-78210948 None:intergenic 40.0%
!!! GTTTTGATTAAGGGTCCGTT+TGG - chr3_1:78211405-78211424 Msa0377600:CDS 40.0%
GGTTGCTTATCGATGAATTC+AGG - chr3_1:78211734-78211753 Msa0377600:intron 40.0%
TTTATAGTGGTAGACGGTAG+TGG - chr3_1:78211810-78211829 Msa0377600:intron 40.0%
CAGAAACGTGACTTTGGATA+TGG + chr3_1:78212245-78212264 None:intergenic 40.0%
TAAATCCTGATCTTGGGATC+AGG + chr3_1:78212278-78212297 None:intergenic 40.0%
GTTTCCTTTCTGTGTTCATC+TGG - chr3_1:78212331-78212350 Msa0377600:CDS 40.0%
CATGTCAAAGTTTGCAGGAA+AGG - chr3_1:78212421-78212440 Msa0377600:intron 40.0%
ATGCATTCCACTTGAGAGTT+AGG - chr3_1:78212444-78212463 Msa0377600:intron 40.0%
TGCATTCCACTTGAGAGTTA+GGG - chr3_1:78212445-78212464 Msa0377600:intron 40.0%
CAACAAGATGCTTTCATGTG+CGG - chr3_1:78212493-78212512 Msa0377600:intron 40.0%
AACAAGATGCTTTCATGTGC+GGG - chr3_1:78212494-78212513 Msa0377600:intron 40.0%
TTTGTGCTAGAGTGGCTATT+GGG - chr3_1:78212570-78212589 Msa0377600:intron 40.0%
TCTTCTTTCTGTTCGTTGCA+AGG - chr3_1:78212598-78212617 Msa0377600:intron 40.0%
AGATCATTGTTAGCAGGAAG+TGG - chr3_1:78212687-78212706 Msa0377600:intron 40.0%
TCACACCATCAGGCATAATT+CGG + chr3_1:78212904-78212923 None:intergenic 40.0%
TATGCAGCTTCACATTACCT+TGG + chr3_1:78212930-78212949 None:intergenic 40.0%
GAATTCATTGTACCGCATGT+TGG - chr3_1:78212951-78212970 Msa0377600:intron 40.0%
ACAAACATCAAACGCAGCCA+TGG - chr3_1:78210909-78210928 Msa0377600:three_prime_UTR 45.0%
CAAACATCAAACGCAGCCAT+GGG - chr3_1:78210910-78210929 Msa0377600:three_prime_UTR 45.0%
GTCAGGGTGAATCAGAAACA+CGG + chr3_1:78211072-78211091 None:intergenic 45.0%
TTGGAAGAGGTTGTCTGTCA+GGG + chr3_1:78211088-78211107 None:intergenic 45.0%
ATTGGAAGAGGTTGTCTGTC+AGG + chr3_1:78211089-78211108 None:intergenic 45.0%
TGGCTCATACAATACAAGCG+TGG + chr3_1:78211848-78211867 None:intergenic 45.0%
ATTTGACGGTAACACCTTGC+AGG + chr3_1:78212212-78212231 None:intergenic 45.0%
CTGACCAGATGAACACAGAA+AGG + chr3_1:78212338-78212357 None:intergenic 45.0%
TCTGTGTTCATCTGGTCAGT+TGG - chr3_1:78212339-78212358 Msa0377600:CDS 45.0%
CTGTGTTCATCTGGTCAGTT+GGG - chr3_1:78212340-78212359 Msa0377600:CDS 45.0%
GAAGGAAAATGTGTCCAGTG+AGG - chr3_1:78212364-78212383 Msa0377600:intron 45.0%
GATGAACCCTAACTCTCAAG+TGG + chr3_1:78212454-78212473 None:intergenic 45.0%
ACTCTAGCACAAACACCTTG+TGG + chr3_1:78212563-78212582 None:intergenic 45.0%
! ACAAGGTGTTTGTGCTAGAG+TGG - chr3_1:78212562-78212581 Msa0377600:intron 45.0%
GTTTGTGCTAGAGTGGCTAT+TGG - chr3_1:78212569-78212588 Msa0377600:intron 45.0%
CAGGGAACTTGAACTTAGCA+CGG + chr3_1:78212658-78212677 None:intergenic 45.0%
! CAATGATCTTTTGACGGCCA+GGG + chr3_1:78212676-78212695 None:intergenic 45.0%
! ACAATGATCTTTTGACGGCC+AGG + chr3_1:78212677-78212696 None:intergenic 45.0%
GAGAACCGAATTATGCCTGA+TGG - chr3_1:78212896-78212915 Msa0377600:intron 45.0%
CTAAGCCTCATCATTACAGC+TGG + chr3_1:78213196-78213215 None:intergenic 45.0%
CAGCTGTAATGATGAGGCTT+AGG - chr3_1:78213194-78213213 Msa0377600:intron 45.0%
!!! AAACAAATTATATATTTTTA+GGG + chr3_1:78211611-78211630 None:intergenic 5.0%
TCTTGGGATCAGGAACACCA+CGG + chr3_1:78212268-78212287 None:intergenic 50.0%
GTGTTCCTGATCCCAAGATC+AGG - chr3_1:78212270-78212289 Msa0377600:CDS 50.0%
TCATCTGGTCAGTTGGGAGA+AGG - chr3_1:78212346-78212365 Msa0377600:intron 50.0%
TTTCATGTGCGGGAGCTGAT+AGG - chr3_1:78212504-78212523 Msa0377600:intron 50.0%
AGGCTTCAGACTGGTATGAG+AGG - chr3_1:78212524-78212543 Msa0377600:intron 50.0%
GGCTTCAGACTGGTATGAGA+GGG - chr3_1:78212525-78212544 Msa0377600:intron 50.0%
GCTTCAGACTGGTATGAGAG+GGG - chr3_1:78212526-78212545 Msa0377600:intron 50.0%
! ACTGGTATGAGAGGGGCTTT+TGG - chr3_1:78212533-78212552 Msa0377600:intron 50.0%
CAACAACAGCCATCATGCTC+AGG - chr3_1:78212622-78212641 Msa0377600:intron 50.0%
GGAACTTGAACTTAGCACGG+CGG + chr3_1:78212655-78212674 None:intergenic 50.0%
! CGTGCTAAGTTCAAGTTCCC+TGG - chr3_1:78212656-78212675 Msa0377600:intron 50.0%
ACCTTGGCATTCACACCATC+AGG + chr3_1:78212914-78212933 None:intergenic 50.0%
TTGCAGCTTCTTGGATGCCA+TGG - chr3_1:78213129-78213148 Msa0377600:intron 50.0%
TCTTGGATGCCATGGACCAT+TGG - chr3_1:78213137-78213156 Msa0377600:intron 50.0%
! GGAAAGCTCTTCCAGGTTGA+CGG + chr3_1:78213167-78213186 None:intergenic 50.0%
CATCATTACAGCTGGCAGTC+AGG + chr3_1:78213188-78213207 None:intergenic 50.0%
GACTGCCAGCTGTAATGATG+AGG - chr3_1:78213188-78213207 Msa0377600:intron 50.0%
CCACGGCAGAAACGTGACTT+TGG + chr3_1:78212251-78212270 None:intergenic 55.0%
CCAAAGTCACGTTTCTGCCG+TGG - chr3_1:78212248-78212267 Msa0377600:CDS 55.0%
AGCAGCTTCAAGTGCCTCAC+TGG + chr3_1:78212381-78212400 None:intergenic 55.0%
! GTGAGGCACTTGAAGCTGCT+AGG - chr3_1:78212381-78212400 Msa0377600:intron 55.0%
GGAGCTGATAGGCTTCAGAC+TGG - chr3_1:78212515-78212534 Msa0377600:intron 55.0%
!! GGGGCTTTTGGAAAGCCACA+AGG - chr3_1:78212545-78212564 Msa0377600:intron 55.0%
TGCTAGAGTGGCTATTGGGC+AGG - chr3_1:78212574-78212593 Msa0377600:intron 55.0%
CAACAGCCATCATGCTCAGG+AGG - chr3_1:78212625-78212644 Msa0377600:intron 55.0%
! GCCTGATGGTGTGAATGCCA+AGG - chr3_1:78212910-78212929 Msa0377600:intron 55.0%
! AGCTCTTCCAGGTTGACGGT+TGG + chr3_1:78213163-78213182 None:intergenic 55.0%
GCAGTCAGGAAAGCTCTTCC+AGG + chr3_1:78213174-78213193 None:intergenic 55.0%
GGAGAGCCTCCTGAGCATGA+TGG + chr3_1:78212634-78212653 None:intergenic 60.0%
! GACGGTTGGCCAATGGTCCA+TGG + chr3_1:78213149-78213168 None:intergenic 60.0%
! CCAGGTTGACGGTTGGCCAA+TGG + chr3_1:78213156-78213175 None:intergenic 60.0%
CCATTGGCCAACCGTCAACC+TGG - chr3_1:78213153-78213172 Msa0377600:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 78210895 78213676 78210895 ID=Msa0377600;Name=Msa0377600
chr3_1 mRNA 78210895 78213676 78210895 ID=Msa0377600-mRNA-1;Parent=Msa0377600;Name=Msa0377600-mRNA-1;_AED=0.06;_eAED=0.06;_QI=33|1|1|1|0.66|1|4|461|224
chr3_1 exon 78210895 78211436 78210895 ID=Msa0377600-mRNA-1:exon:18797;Parent=Msa0377600-mRNA-1
chr3_1 exon 78211640 78211721 78211640 ID=Msa0377600-mRNA-1:exon:18796;Parent=Msa0377600-mRNA-1
chr3_1 exon 78211863 78212364 78211863 ID=Msa0377600-mRNA-1:exon:18795;Parent=Msa0377600-mRNA-1
chr3_1 exon 78213634 78213676 78213634 ID=Msa0377600-mRNA-1:exon:18794;Parent=Msa0377600-mRNA-1
chr3_1 five_prime_UTR 78213644 78213676 78213644 ID=Msa0377600-mRNA-1:five_prime_utr;Parent=Msa0377600-mRNA-1
chr3_1 CDS 78213634 78213643 78213634 ID=Msa0377600-mRNA-1:cds;Parent=Msa0377600-mRNA-1
chr3_1 CDS 78211863 78212364 78211863 ID=Msa0377600-mRNA-1:cds;Parent=Msa0377600-mRNA-1
chr3_1 CDS 78211640 78211721 78211640 ID=Msa0377600-mRNA-1:cds;Parent=Msa0377600-mRNA-1
chr3_1 CDS 78211356 78211436 78211356 ID=Msa0377600-mRNA-1:cds;Parent=Msa0377600-mRNA-1
chr3_1 three_prime_UTR 78210895 78211355 78210895 ID=Msa0377600-mRNA-1:three_prime_utr;Parent=Msa0377600-mRNA-1
Gene Sequence

>Msa0377600

ATGGGAAGAAGACCTGCAAGGTGTTACCGTCAAATTAAGAACAAGCCATATCCAAAGTCACGTTTCTGCCGTGGTGTTCCTGATCCCAAGATCAGGATTTATGATGTTGGTATGAAGAAGAAAGGTGTTGATGAGTTTCCTTTCTGTGTTCATCTGGTCAGTTGGGAGAAGGAAAATGTGTCCAGTGAGGCACTTGAAGCTGCTAGGATTGCCTGCAACAAATACATGTCAAAGTTTGCAGGAAAGGATGCATTCCACTTGAGAGTTAGGGTTCATCCATTCCATGTTCTTAGGATCAACAAGATGCTTTCATGTGCGGGAGCTGATAGGCTTCAGACTGGTATGAGAGGGGCTTTTGGAAAGCCACAAGGTGTTTGTGCTAGAGTGGCTATTGGGCAGGTTCTTCTTTCTGTTCGTTGCAAGGACAACAACAGCCATCATGCTCAGGAGGCTCTCCGCCGTGCTAAGTTCAAGTTCCCTGGCCGTCAAAAGATCATTGTTAGCAGGAAGTGGGGATTCACTAAGATTAACCGAGCTGATTATCTGAAGTTAAAGTCTGAGAACCGAATTATGCCTGATGGTGTGAATGCCAAGCTTCTTGGATGCCATGGACCATTGGCCAACCGTCAACCTGGAAGAGCTTTCCTGACTGCCAGCTGTAATGATGAGGCTTAG

Protein sequence

>Msa0377600

MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDNNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKINRADYLKLKSENRIMPDGVNAKLLGCHGPLANRQPGRAFLTASCNDEA*