Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233550 | XP_003593461.1 | 100.000 | 146 | 0 | 0 | 1 | 146 | 1 | 146 | 8.96e-100 | 293 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233550 | sp|Q9FJX2|RL262_ARATH | 88.356 | 146 | 17 | 0 | 1 | 146 | 1 | 146 | 1.02e-91 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233550 | G7ILF2 | 100.000 | 146 | 0 | 0 | 1 | 146 | 1 | 146 | 4.28e-100 | 293 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0233550 | 0.817278 | 3.582747e-52 | -8.615850e-47 |
| Msa0003330 | Msa0233550 | 0.883150 | 5.722638e-71 | -8.615850e-47 |
| Msa0020870 | Msa0233550 | 0.846487 | 2.105716e-59 | -8.615850e-47 |
| Msa0027590 | Msa0233550 | 0.859057 | 5.382228e-63 | -8.615850e-47 |
| Msa0042510 | Msa0233550 | 0.874743 | 5.318905e-68 | -8.615850e-47 |
| Msa0075350 | Msa0233550 | 0.809864 | 1.532879e-50 | -8.615850e-47 |
| Msa0079560 | Msa0233550 | 0.855627 | 5.556183e-62 | -8.615850e-47 |
| Msa0094210 | Msa0233550 | 0.840249 | 9.741305e-58 | -8.615850e-47 |
| Msa0108750 | Msa0233550 | 0.806165 | 9.392911e-50 | -8.615850e-47 |
| Msa0127230 | Msa0233550 | 0.846248 | 2.447026e-59 | -8.615850e-47 |
| Msa0128330 | Msa0233550 | 0.837297 | 5.648304e-57 | -8.615850e-47 |
| Msa0132460 | Msa0233550 | 0.811801 | 5.838688e-51 | -8.615850e-47 |
| Msa0159870 | Msa0233550 | 0.813122 | 3.003373e-51 | -8.615850e-47 |
| Msa0167860 | Msa0233550 | 0.852890 | 3.429153e-61 | -8.615850e-47 |
| Msa0168320 | Msa0233550 | 0.896348 | 4.021682e-76 | -8.615850e-47 |
| Msa0174580 | Msa0233550 | 0.823767 | 1.160257e-53 | -8.615850e-47 |
| Msa0182050 | Msa0233550 | 0.819972 | 8.770613e-53 | -8.615850e-47 |
| Msa0182100 | Msa0233550 | 0.825743 | 3.969202e-54 | -8.615850e-47 |
| Msa0191450 | Msa0233550 | 0.910177 | 2.507775e-82 | -8.615850e-47 |
| Msa0191550 | Msa0233550 | 0.901555 | 2.381320e-78 | -8.615850e-47 |
| Msa0192300 | Msa0233550 | 0.849183 | 3.809067e-60 | -8.615850e-47 |
| Msa0216200 | Msa0233550 | 0.856806 | 2.507677e-62 | -8.615850e-47 |
| Msa0233550 | Msa0239420 | 0.909327 | 6.440974e-82 | -8.615850e-47 |
| Msa0233550 | Msa0274940 | 0.822312 | 2.533848e-53 | -8.615850e-47 |
| Msa0233550 | Msa0277600 | 0.816627 | 5.016812e-52 | -8.615850e-47 |
| Msa0233550 | Msa0281370 | 0.823886 | 1.087711e-53 | -8.615850e-47 |
| Msa0233550 | Msa0295310 | 0.807957 | 3.921816e-50 | -8.615850e-47 |
| Msa0233550 | Msa0301250 | 0.858544 | 7.659292e-63 | -8.615850e-47 |
| Msa0233550 | Msa0313060 | 0.838790 | 2.333240e-57 | -8.615850e-47 |
| Msa0233550 | Msa0315430 | 0.825029 | 5.857692e-54 | -8.615850e-47 |
| Msa0233550 | Msa0321270 | 0.812837 | 3.467388e-51 | -8.615850e-47 |
| Msa0233550 | Msa0340560 | 0.810256 | 1.261656e-50 | -8.615850e-47 |
| Msa0233550 | Msa0371490 | 0.842909 | 1.938410e-58 | -8.615850e-47 |
| Msa0233550 | Msa0376850 | 0.853594 | 2.154746e-61 | -8.615850e-47 |
| Msa0233550 | Msa0377520 | 0.806735 | 7.120004e-50 | -8.615850e-47 |
| Msa0233550 | Msa0382670 | 0.865257 | 6.732824e-65 | -8.615850e-47 |
| Msa0233550 | Msa0387290 | 0.842172 | 3.040618e-58 | -8.615850e-47 |
| Msa0233550 | Msa0416470 | 0.808275 | 3.354515e-50 | -8.615850e-47 |
| Msa0233550 | Msa0426090 | 0.837735 | 4.360785e-57 | -8.615850e-47 |
| Msa0233550 | Msa0426250 | 0.802544 | 5.335859e-49 | -8.615850e-47 |
| Msa0233550 | Msa0468140 | 0.800246 | 1.576690e-48 | -8.615850e-47 |
| Msa0233550 | Msa0472480 | 0.842384 | 2.672492e-58 | -8.615850e-47 |
| Msa0233550 | Msa0481520 | 0.820764 | 5.772387e-53 | -8.615850e-47 |
| Msa0233550 | Msa0485220 | 0.848900 | 4.562729e-60 | -8.615850e-47 |
| Msa0233550 | Msa0511760 | 0.870033 | 1.980691e-66 | -8.615850e-47 |
| Msa0233550 | Msa0516830 | 0.853826 | 1.848176e-61 | -8.615850e-47 |
| Msa0233550 | Msa0517480 | 0.800678 | 1.287454e-48 | -8.615850e-47 |
| Msa0233550 | Msa0547920 | 0.822335 | 2.503328e-53 | -8.615850e-47 |
| Msa0233550 | Msa0552510 | 0.812940 | 3.291369e-51 | -8.615850e-47 |
| Msa0233550 | Msa0573550 | 0.854922 | 8.912995e-62 | -8.615850e-47 |
| Msa0233550 | Msa0574780 | 0.876942 | 9.343728e-69 | -8.615850e-47 |
| Msa0233550 | Msa0578010 | 0.845599 | 3.672080e-59 | -8.615850e-47 |
| Msa0233550 | Msa0579830 | 0.814906 | 1.213279e-51 | -8.615850e-47 |
| Msa0233550 | Msa0582070 | 0.809686 | 1.673777e-50 | -8.615850e-47 |
| Msa0233550 | Msa0597240 | 0.848087 | 7.663870e-60 | -8.615850e-47 |
| Msa0233550 | Msa0602900 | 0.821440 | 4.032201e-53 | -8.615850e-47 |
| Msa0233550 | Msa0605600 | 0.803132 | 4.033487e-49 | -8.615850e-47 |
| Msa0233550 | Msa0605890 | 0.821920 | 3.123151e-53 | -8.615850e-47 |
| Msa0233550 | Msa0619230 | 0.894165 | 3.185690e-75 | -8.615850e-47 |
| Msa0233550 | Msa0621190 | 0.868753 | 5.164258e-66 | -8.615850e-47 |
| Msa0233550 | Msa0643960 | 0.817424 | 3.321469e-52 | -8.615850e-47 |
| Msa0233550 | Msa0649890 | 0.831320 | 1.784996e-55 | -8.615850e-47 |
| Msa0233550 | Msa0656450 | 0.869650 | 2.641241e-66 | -8.615850e-47 |
| Msa0233550 | Msa0681090 | 0.804793 | 1.821447e-49 | -8.615850e-47 |
| Msa0233550 | Msa0686550 | 0.846640 | 1.913352e-59 | -8.615850e-47 |
| Msa0233550 | Msa0691760 | 0.836287 | 1.022306e-56 | -8.615850e-47 |
| Msa0233550 | Msa0694400 | 0.836322 | 1.001416e-56 | -8.615850e-47 |
| Msa0233550 | Msa0700370 | 0.845859 | 3.122485e-59 | -8.615850e-47 |
| Msa0233550 | Msa0708630 | 0.813677 | 2.267523e-51 | -8.615850e-47 |
| Msa0233550 | Msa0752240 | 0.843650 | 1.230011e-58 | -8.615850e-47 |
| Msa0233550 | Msa0758420 | 0.818377 | 2.022998e-52 | -8.615850e-47 |
| Msa0233550 | Msa0788380 | 0.835903 | 1.279704e-56 | -8.615850e-47 |
| Msa0233550 | Msa0822580 | 0.810124 | 1.347005e-50 | -8.615850e-47 |
| Msa0233550 | Msa0834220 | 0.806826 | 6.812705e-50 | -8.615850e-47 |
| Msa0233550 | Msa0880050 | 0.801217 | 9.990843e-49 | -8.615850e-47 |
| Msa0233550 | Msa0929700 | 0.848460 | 6.045247e-60 | -8.615850e-47 |
| Msa0233550 | Msa0930360 | 0.857816 | 1.261128e-62 | -8.615850e-47 |
| Msa0233550 | Msa0930790 | 0.865593 | 5.275985e-65 | -8.615850e-47 |
| Msa0233550 | Msa1041680 | 0.834844 | 2.369912e-56 | -8.615850e-47 |
| Msa0233550 | Msa1124980 | 0.816151 | 6.411529e-52 | -8.615850e-47 |
| Msa0233550 | Msa1134750 | 0.809264 | 2.061918e-50 | -8.615850e-47 |
| Msa0233550 | Msa1144630 | 0.846704 | 1.837576e-59 | -8.615850e-47 |
| Msa0233550 | Msa1164150 | 0.815286 | 9.995236e-52 | -8.615850e-47 |
| Msa0233550 | Msa1165700 | 0.807643 | 4.572440e-50 | -8.615850e-47 |
| Msa0233550 | Msa1166570 | 0.837121 | 6.266479e-57 | -8.615850e-47 |
| Msa0233550 | Msa1167360 | 0.812673 | 3.765686e-51 | -8.615850e-47 |
| Msa0233550 | Msa1180000 | 0.839282 | 1.739438e-57 | -8.615850e-47 |
| Msa0233550 | Msa1186030 | 0.837714 | 4.416325e-57 | -8.615850e-47 |
| Msa0233550 | Msa1213850 | 0.827811 | 1.273037e-54 | -8.615850e-47 |
| Msa0233550 | Msa1235950 | 0.868709 | 5.336630e-66 | -8.615850e-47 |
| Msa0233550 | Msa1235980 | 0.880314 | 6.079866e-70 | -8.615850e-47 |
| Msa0233550 | Msa1237040 | 0.835413 | 1.702421e-56 | -8.615850e-47 |
| Msa0233550 | Msa1240270 | 0.839291 | 1.730300e-57 | -8.615850e-47 |
| Msa0233550 | Msa1258540 | 0.836831 | 7.430339e-57 | -8.615850e-47 |
| Msa0233550 | Msa1270640 | 0.822826 | 1.924442e-53 | -8.615850e-47 |
| Msa0233550 | Msa1270710 | 0.825287 | 5.089845e-54 | -8.615850e-47 |
| Msa0233550 | Msa1284800 | 0.830645 | 2.614003e-55 | -8.615850e-47 |
| Msa0233550 | Msa1301640 | 0.800520 | 1.386876e-48 | -8.615850e-47 |
| Msa0233550 | Msa1316100 | 0.838316 | 3.091807e-57 | -8.615850e-47 |
| Msa0233550 | Msa1317390 | 0.889281 | 2.787049e-73 | -8.615850e-47 |
| Msa0233550 | Msa1329930 | 0.802105 | 6.568351e-49 | -8.615850e-47 |
| Msa0233550 | Msa1351020 | 0.867380 | 1.427815e-65 | -8.615850e-47 |
| Msa0233550 | Msa1363910 | 0.825677 | 4.113737e-54 | -8.615850e-47 |
| Msa0233550 | Msa1363930 | 0.849746 | 2.653848e-60 | -8.615850e-47 |
| Msa0233550 | Msa1385480 | 0.807495 | 4.916946e-50 | -8.615850e-47 |
| Msa0233550 | Msa1387750 | 0.860785 | 1.621588e-63 | -8.615850e-47 |
| Msa0233550 | Msa1390760 | 0.891349 | 4.307626e-74 | -8.615850e-47 |
| Msa0233550 | Msa1402410 | 0.807005 | 6.244544e-50 | -8.615850e-47 |
| Msa0233550 | Msa1407550 | 0.883499 | 4.261115e-71 | -8.615850e-47 |
| Msa0233550 | Msa1413570 | 0.871835 | 5.047465e-67 | -8.615850e-47 |
| Msa0233550 | Msa1423050 | 0.800838 | 1.194231e-48 | -8.615850e-47 |
| Msa0233550 | Msa1432310 | 0.850151 | 2.043725e-60 | -8.615850e-47 |
| Msa0233550 | Msa1446410 | 0.800337 | 1.511085e-48 | -8.615850e-47 |
| Msa0233550 | Msa1453530 | 0.862880 | 3.702844e-64 | -8.615850e-47 |
| Msa0233550 | Msa1463510 | 0.826355 | 2.839302e-54 | -8.615850e-47 |
| Msa0233550 | Msa1463570 | 0.838557 | 2.680155e-57 | -8.615850e-47 |
| Msa0233550 | Msa1465700 | 0.880888 | 3.786153e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233550 | MtrunA17_Chr2g0281331 | 100.000 | 146 | 0 | 0 | 1 | 146 | 1 | 146 | 8.25e-104 | 293 |
| Msa0233550 | MtrunA17_Chr5g0401191 | 95.205 | 146 | 7 | 0 | 1 | 146 | 1 | 146 | 1.61e-90 | 259 |
| Msa0233550 | MtrunA17_Chr5g0447011 | 91.096 | 146 | 13 | 0 | 1 | 146 | 1 | 146 | 3.37e-87 | 251 |
| Msa0233550 | MtrunA17_Chr8g0370201 | 56.977 | 86 | 10 | 1 | 30 | 115 | 1 | 59 | 2.09e-23 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233550 | AT5G67510.1 | 88.356 | 146 | 17 | 0 | 1 | 146 | 1 | 146 | 1.04e-92 | 265 |
| Msa0233550 | AT3G49910.1 | 85.616 | 146 | 21 | 0 | 1 | 146 | 1 | 146 | 1.23e-91 | 262 |
Find 50 sgRNAs with CRISPR-Local
Find 48 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTATGCAGACCGTTGATT+AGG | 0.363868 | 2_2:-5900600 | None:intergenic |
| CATTGAACGGACGTTGTACT+TGG | 0.377101 | 2_2:+5900901 | None:intergenic |
| TCGCAAAGACGACGAAGTTC+AGG | 0.379749 | 2_2:-5900873 | Msa0233550:CDS |
| TTAGTGATAACAACCTTTGA+AGG | 0.395167 | 2_2:+5900722 | None:intergenic |
| ACTTCGTCGTCTTTGCGAAC+AGG | 0.416424 | 2_2:+5900878 | None:intergenic |
| ATGGATCTACCGTTAATGTT+GGG | 0.416486 | 2_2:-5900751 | Msa0233550:CDS |
| GGGTCGTGCTGCTGCTGATA+AGG | 0.420559 | 2_2:-5900651 | Msa0233550:CDS |
| ACGGCTCTTCCTACGGCTGC+TGG | 0.422834 | 2_2:+5900997 | None:intergenic |
| AAGACACGGCGGACGCTTGA+TGG | 0.437229 | 2_2:+5900956 | None:intergenic |
| CACTAAGCTCAGATTGGATA+AGG | 0.438891 | 2_2:-5900705 | Msa0233550:CDS |
| CCTGAGTAACCTTACCTTCA+CGG | 0.446679 | 2_2:+5900828 | None:intergenic |
| AGGATTAACCCCAACATTAA+CGG | 0.448396 | 2_2:+5900742 | None:intergenic |
| TGTTATCACTAAGCTCAGAT+TGG | 0.466490 | 2_2:-5900711 | Msa0233550:CDS |
| GACGAAGTTCAGGTCGTTCG+TGG | 0.488796 | 2_2:-5900863 | Msa0233550:CDS |
| ATTCAAAGGCCGTGAAGGTA+AGG | 0.498862 | 2_2:-5900837 | Msa0233550:CDS |
| CTCAGGTTTACCGTCGCAAG+TGG | 0.512762 | 2_2:-5900811 | Msa0233550:CDS |
| TGTTGGGGTTAATCCTTCAA+AGG | 0.524932 | 2_2:-5900735 | Msa0233550:CDS |
| GCTACTTGATCGTAAGGCTA+AGG | 0.528270 | 2_2:-5900672 | Msa0233550:CDS |
| AATGGATCTACCGTTAATGT+TGG | 0.529601 | 2_2:-5900752 | Msa0233550:CDS |
| CTACGGCTGCTGGAAACTCG+TGG | 0.530535 | 2_2:+5901007 | None:intergenic |
| TGCTGCTGCTGATAAGGAGA+AGG | 0.537077 | 2_2:-5900645 | Msa0233550:CDS |
| GAGCCGTAAGGCTCATTTCA+CGG | 0.545137 | 2_2:-5900981 | Msa0233550:CDS |
| ATCACAAGGGAGAAGGTGAA+TGG | 0.545267 | 2_2:-5900770 | Msa0233550:CDS |
| GAGCCTTACGGCTCTTCCTA+CGG | 0.547173 | 2_2:+5900990 | None:intergenic |
| CTACTTGATCGTAAGGCTAA+GGG | 0.553374 | 2_2:-5900671 | Msa0233550:CDS |
| GTCGTTCGTGGAACATTCAA+AGG | 0.554383 | 2_2:-5900851 | Msa0233550:CDS |
| TAAATCGCTACTTGATCGTA+AGG | 0.555125 | 2_2:-5900678 | Msa0233550:CDS |
| GGGTACTAAGTTTGCTCCTG+AGG | 0.563912 | 2_2:-5900624 | Msa0233550:CDS |
| TGGATCTACCGTTAATGTTG+GGG | 0.564613 | 2_2:-5900750 | Msa0233550:CDS |
| AACGGACGTTGTACTTGGAT+CGG | 0.564652 | 2_2:+5900906 | None:intergenic |
| CCGTGAAGGTAAGGTTACTC+AGG | 0.566699 | 2_2:-5900828 | Msa0233550:CDS |
| CTTTGCGAACAGGCATTGAA+CGG | 0.570326 | 2_2:+5900888 | None:intergenic |
| GTTGTACTTGGATCGGAGAT+CGG | 0.572814 | 2_2:+5900913 | None:intergenic |
| ACGGTCTGCATAATATCCTC+AGG | 0.575139 | 2_2:+5900608 | None:intergenic |
| GCGCCGTGAAATGAGCCTTA+CGG | 0.575259 | 2_2:+5900978 | None:intergenic |
| CGAACGCATCACAAGGGAGA+AGG | 0.580140 | 2_2:-5900777 | Msa0233550:CDS |
| GATCGGAGATCGGCGGAGAG+TGG | 0.584970 | 2_2:+5900923 | None:intergenic |
| TACGGCTGCTGGAAACTCGT+GGG | 0.586325 | 2_2:+5901008 | None:intergenic |
| TTCACATCGAACGCATCACA+AGG | 0.588472 | 2_2:-5900784 | Msa0233550:CDS |
| CAGCCGTAGGAAGAGCCGTA+AGG | 0.591177 | 2_2:-5900993 | Msa0233550:CDS |
| GGAACATTCAAAGGCCGTGA+AGG | 0.606062 | 2_2:-5900842 | Msa0233550:CDS |
| GATTCAAGAATCCTAATCAA+CGG | 0.625900 | 2_2:+5900589 | None:intergenic |
| GCTGCTGCTGATAAGGAGAA+GGG | 0.634378 | 2_2:-5900644 | Msa0233550:CDS |
| TGTGAATCACCCACTTGCGA+CGG | 0.658219 | 2_2:+5900801 | None:intergenic |
| TCAGGTTTACCGTCGCAAGT+GGG | 0.670860 | 2_2:-5900810 | Msa0233550:CDS |
| CACGAGTTTCCAGCAGCCGT+AGG | 0.686122 | 2_2:-5901006 | Msa0233550:CDS |
| GTGGCGCGCTCATTAAGACA+CGG | 0.705562 | 2_2:+5900942 | None:intergenic |
| GTACTTGGATCGGAGATCGG+CGG | 0.709980 | 2_2:+5900916 | None:intergenic |
| TCACATCGAACGCATCACAA+GGG | 0.710980 | 2_2:-5900783 | Msa0233550:CDS |
| GCGCGCTCATTAAGACACGG+CGG | 0.823768 | 2_2:+5900945 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| TTAGTGATAACAACCTTTGA+AGG | + | chr2_2:5900901-5900920 | None:intergenic | 30.0% | |
| AATGGATCTACCGTTAATGT+TGG | - | chr2_2:5900868-5900887 | Msa0233550:CDS | 35.0% | |
| ATGGATCTACCGTTAATGTT+GGG | - | chr2_2:5900869-5900888 | Msa0233550:CDS | 35.0% | |
| AGGATTAACCCCAACATTAA+CGG | + | chr2_2:5900881-5900900 | None:intergenic | 35.0% | |
| TGTTATCACTAAGCTCAGAT+TGG | - | chr2_2:5900909-5900928 | Msa0233550:CDS | 35.0% | |
| TAAATCGCTACTTGATCGTA+AGG | - | chr2_2:5900942-5900961 | Msa0233550:CDS | 35.0% | |
| TGGATCTACCGTTAATGTTG+GGG | - | chr2_2:5900870-5900889 | Msa0233550:CDS | 40.0% | |
| TGTTGGGGTTAATCCTTCAA+AGG | - | chr2_2:5900885-5900904 | Msa0233550:CDS | 40.0% | |
| CACTAAGCTCAGATTGGATA+AGG | - | chr2_2:5900915-5900934 | Msa0233550:CDS | 40.0% | |
| CTACTTGATCGTAAGGCTAA+GGG | - | chr2_2:5900949-5900968 | Msa0233550:CDS | 40.0% | |
| GTTGTACTTGGATCGGAGAT+CGG | + | chr2_2:5900710-5900729 | None:intergenic | 45.0% | |
| AACGGACGTTGTACTTGGAT+CGG | + | chr2_2:5900717-5900736 | None:intergenic | 45.0% | |
| CATTGAACGGACGTTGTACT+TGG | + | chr2_2:5900722-5900741 | None:intergenic | 45.0% | |
| !! | CTTTGCGAACAGGCATTGAA+CGG | + | chr2_2:5900735-5900754 | None:intergenic | 45.0% |
| GTCGTTCGTGGAACATTCAA+AGG | - | chr2_2:5900769-5900788 | Msa0233550:CDS | 45.0% | |
| ATTCAAAGGCCGTGAAGGTA+AGG | - | chr2_2:5900783-5900802 | Msa0233550:CDS | 45.0% | |
| CCTGAGTAACCTTACCTTCA+CGG | + | chr2_2:5900795-5900814 | None:intergenic | 45.0% | |
| TTCACATCGAACGCATCACA+AGG | - | chr2_2:5900836-5900855 | Msa0233550:CDS | 45.0% | |
| TCACATCGAACGCATCACAA+GGG | - | chr2_2:5900837-5900856 | Msa0233550:CDS | 45.0% | |
| ATCACAAGGGAGAAGGTGAA+TGG | - | chr2_2:5900850-5900869 | Msa0233550:CDS | 45.0% | |
| GCTACTTGATCGTAAGGCTA+AGG | - | chr2_2:5900948-5900967 | Msa0233550:CDS | 45.0% | |
| ACGGTCTGCATAATATCCTC+AGG | + | chr2_2:5901015-5901034 | None:intergenic | 45.0% | |
| GAGCCGTAAGGCTCATTTCA+CGG | - | chr2_2:5900639-5900658 | Msa0233550:CDS | 50.0% | |
| ACTTCGTCGTCTTTGCGAAC+AGG | + | chr2_2:5900745-5900764 | None:intergenic | 50.0% | |
| TCGCAAAGACGACGAAGTTC+AGG | - | chr2_2:5900747-5900766 | Msa0233550:CDS | 50.0% | |
| GGAACATTCAAAGGCCGTGA+AGG | - | chr2_2:5900778-5900797 | Msa0233550:CDS | 50.0% | |
| CCGTGAAGGTAAGGTTACTC+AGG | - | chr2_2:5900792-5900811 | Msa0233550:CDS | 50.0% | |
| TCAGGTTTACCGTCGCAAGT+GGG | - | chr2_2:5900810-5900829 | Msa0233550:CDS | 50.0% | |
| TGTGAATCACCCACTTGCGA+CGG | + | chr2_2:5900822-5900841 | None:intergenic | 50.0% | |
| TGCTGCTGCTGATAAGGAGA+AGG | - | chr2_2:5900975-5900994 | Msa0233550:CDS | 50.0% | |
| GCTGCTGCTGATAAGGAGAA+GGG | - | chr2_2:5900976-5900995 | Msa0233550:CDS | 50.0% | |
| ! | GGGTACTAAGTTTGCTCCTG+AGG | - | chr2_2:5900996-5901015 | Msa0233550:CDS | 50.0% |
| TACGGCTGCTGGAAACTCGT+GGG | + | chr2_2:5900615-5900634 | None:intergenic | 55.0% | |
| GAGCCTTACGGCTCTTCCTA+CGG | + | chr2_2:5900633-5900652 | None:intergenic | 55.0% | |
| GCGCCGTGAAATGAGCCTTA+CGG | + | chr2_2:5900645-5900664 | None:intergenic | 55.0% | |
| GTGGCGCGCTCATTAAGACA+CGG | + | chr2_2:5900681-5900700 | None:intergenic | 55.0% | |
| GTACTTGGATCGGAGATCGG+CGG | + | chr2_2:5900707-5900726 | None:intergenic | 55.0% | |
| GACGAAGTTCAGGTCGTTCG+TGG | - | chr2_2:5900757-5900776 | Msa0233550:CDS | 55.0% | |
| CTCAGGTTTACCGTCGCAAG+TGG | - | chr2_2:5900809-5900828 | Msa0233550:CDS | 55.0% | |
| CGAACGCATCACAAGGGAGA+AGG | - | chr2_2:5900843-5900862 | Msa0233550:CDS | 55.0% | |
| CTACGGCTGCTGGAAACTCG+TGG | + | chr2_2:5900616-5900635 | None:intergenic | 60.0% | |
| CACGAGTTTCCAGCAGCCGT+AGG | - | chr2_2:5900614-5900633 | Msa0233550:CDS | 60.0% | |
| CAGCCGTAGGAAGAGCCGTA+AGG | - | chr2_2:5900627-5900646 | Msa0233550:CDS | 60.0% | |
| AAGACACGGCGGACGCTTGA+TGG | + | chr2_2:5900667-5900686 | None:intergenic | 60.0% | |
| GCGCGCTCATTAAGACACGG+CGG | + | chr2_2:5900678-5900697 | None:intergenic | 60.0% | |
| ! | GGGTCGTGCTGCTGCTGATA+AGG | - | chr2_2:5900969-5900988 | Msa0233550:CDS | 60.0% |
| ACGGCTCTTCCTACGGCTGC+TGG | + | chr2_2:5900626-5900645 | None:intergenic | 65.0% | |
| GATCGGAGATCGGCGGAGAG+TGG | + | chr2_2:5900700-5900719 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 5900601 | 5901041 | 5900601 | ID=Msa0233550;Name=Msa0233550 |
| chr2_2 | mRNA | 5900601 | 5901041 | 5900601 | ID=Msa0233550-mRNA-1;Parent=Msa0233550;Name=Msa0233550-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|146 |
| chr2_2 | exon | 5900601 | 5901041 | 5900601 | ID=Msa0233550-mRNA-1:exon:2593;Parent=Msa0233550-mRNA-1 |
| chr2_2 | CDS | 5900601 | 5901041 | 5900601 | ID=Msa0233550-mRNA-1:cds;Parent=Msa0233550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
