AlfalfaGEDB | Msa0296470

M. sativa cultivar zhongmu-4 / Msa0296470

KEGG: -
GO: -
PFAM: PF03514.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0296470	XP_003596568.1	98.964	579	6	0	1	579	1	579	0.0	1188

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0296470	sp\|Q69VG1\|CIGR1_ORYSJ	57.797	590	219	11	1	579	1	571	0.0	643

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0296470	G7ITP3	98.964	579	6	0	1	579	1	579	0.0	1188

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0296470	TF	GRAS

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0217280	Msa0296470	0.848621	5.454724e-60	-8.615850e-47
Msa0296470	Msa0334760	0.855534	5.915085e-62	-8.615850e-47

Showing 1 to 2 of 2 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0296470	MtrunA17_Chr2g0319091	98.964	579	6	0	1	579	1	579	0.0	1188
Msa0296470	MtrunA17_Chr5g0447691	64.341	387	135	1	195	578	157	543	0.0	527
Msa0296470	MtrunA17_Chr3g0101141	58.871	372	153	0	207	578	170	541	4.55e-169	491
Msa0296470	MtrunA17_Chr5g0445331	49.703	505	208	6	79	578	68	531	1.33e-166	484
Msa0296470	MtrunA17_Chr4g0076091	48.936	470	187	3	117	578	118	542	3.21e-158	463
Msa0296470	MtrunA17_Chr1g0159461	53.316	377	175	1	202	578	216	591	9.62e-147	436
Msa0296470	MtrunA17_Chr2g0290241	53.704	378	168	2	205	578	50	424	1.43e-145	427
Msa0296470	MtrunA17_Chr3g0125811	53.243	370	173	0	210	579	201	570	5.17e-144	428
Msa0296470	MtrunA17_Chr7g0224271	34.592	503	274	9	113	578	188	672	5.13e-79	262
Msa0296470	MtrunA17_Chr4g0031711	33.245	376	246	3	208	578	357	732	5.78e-69	236

Showing 1 to 10 of 57 entries

Previous1 2 3 4 5 6Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0296470	AT1G50600.3	63.061	379	140	0	200	578	147	525	3.66e-176	509
Msa0296470	AT1G50600.1	63.061	379	140	0	200	578	218	596	1.04e-175	510
Msa0296470	AT1G50600.2	63.061	379	140	0	200	578	222	600	1.56e-175	510
Msa0296470	AT5G48150.1	61.680	381	145	1	199	578	109	489	3.13e-169	490
Msa0296470	AT5G48150.4	61.680	381	145	1	199	578	109	489	3.13e-169	490
Msa0296470	AT5G48150.2	61.680	381	145	1	199	578	109	489	3.13e-169	490
Msa0296470	AT5G48150.3	61.680	381	145	1	199	578	109	489	3.13e-169	490
Msa0296470	AT2G04890.1	60.582	378	142	1	201	578	42	412	7.96e-166	478
Msa0296470	AT4G17230.1	53.543	381	177	0	198	578	144	524	3.26e-144	427
Msa0296470	AT4G17230.2	53.543	381	177	0	198	578	144	524	3.26e-144	427

Showing 1 to 10 of 46 entries

Previous1 2 3 4 5Next

Find 152 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATGGGGCAATGCTCTT+AGG	0.253125	2_3:-49808072	Msa0296470:CDS
AAATGCTGTGTCTATCAATG+GGG	0.714938	2_3:-49809039	Msa0296470:CDS
AAGAGGATTCATCTCTACAA+GGG	0.614893	2_3:-49809160	Msa0296470:CDS
AAGAGGGGCTTATACCAGAG+AGG	0.693678	2_3:+49809540	None:intergenic
AAGATGGGGCAATGCTCTTA+GGG	0.467770	2_3:-49808071	Msa0296470:CDS
AAGCAGTGCATGTAGAGAAA+CGG	0.563714	2_3:-49809193	Msa0296470:CDS
AAGGATCCAAGCAAACCATT+TGG	0.464280	2_3:+49809671	None:intergenic
AAGTCTAGGTTGACAATGGC+TGG	0.474170	2_3:-49808183	Msa0296470:CDS
AATCTCAAAAGTCCATCCCT+TGG	0.551200	2_3:+49808462	None:intergenic
AATTCAGGAGAAATCCTCTC+TGG	0.536357	2_3:-49809554	Msa0296470:CDS

Showing 1 to 10 of 152 entries

Previous1 2 3 4 5…16Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GAATCAAAATGAGAGGAAAA+CGG	+	chr2_3:49808161-49808180	None:intergenic	30.0%
AGTATCAGAATCAAAATGAG+AGG	+	chr2_3:49808168-49808187	None:intergenic	30.0%
AGAATGATCTTTGCGTATAA+TGG	+	chr2_3:49808283-49808302	None:intergenic	30.0%
TACCACATCTAATTCTTCAT+TGG	-	chr2_3:49808436-49808455	Msa0296470:CDS	30.0%
ACCACATCTAATTCTTCATT+GGG	-	chr2_3:49808437-49808456	Msa0296470:CDS	30.0%
ATCTGTCCCTACTTAAAATT+TGG	-	chr2_3:49808902-49808921	Msa0296470:CDS	30.0%
TCCTTGATGTCTAAGAAATT+CGG	-	chr2_3:49809145-49809164	Msa0296470:CDS	30.0%
TGTTGATGTGAATAATCCAA+GGG	-	chr2_3:49809297-49809316	Msa0296470:CDS	30.0%
GAATTCACATAAGAACTCAA+AGG	+	chr2_3:49809631-49809650	None:intergenic	30.0%
TATACACTAGTTGAGAAAGA+TGG	-	chr2_3:49809688-49809707	Msa0296470:CDS	30.0%

Showing 1 to 10 of 326 entries

Previous1 2 3 4 5…33Next

Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	49808029	49809768	49808029	ID=Msa0296470;Name=Msa0296470
chr2_3	mRNA	49808029	49809768	49808029	ID=Msa0296470-mRNA-1;Parent=Msa0296470;Name=Msa0296470-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|579
chr2_3	exon	49808029	49809768	49808029	ID=Msa0296470-mRNA-1:exon:15661;Parent=Msa0296470-mRNA-1
chr2_3	CDS	49808029	49809768	49808029	ID=Msa0296470-mRNA-1:cds;Parent=Msa0296470-mRNA-1

Gene Sequence

>Msa0296470

ATGGACTCGCAGCAACTTTATAGTTACAGTATGAGTAATGCAGGATTACCTTACATGTCATCTTTTCCATCACTGCCAAATGGTTTGCTTGGATCCTTGAAAGTTGGCTTTGGAAACTCACCCGATTCACCGTTTTCCTCTCATTTTGATTCTGATACTCTTTCTGCATTTAGTGACAGCCACGAGCAACACAATTCAGGAGAAATCCTCTCTGGTATAAGCCCCTCTTACAACTCATCACTTGAAACCAACCATTATACGCAAAGATCATTCTCTTCGATCAACAGTCTCAAAGACAGTTTGCAACTATATTCTGCTAGAAATTCTTTTCTACCAAGTAACCAGAAAATCCGACACGCCTTGTTGGAACTAGAAACTGCTCTGATGGCCCCCGATGATAACGAAGTTACCACATCTAATTCTTCATTGGGTGAGAGCATTAAGGAAACAGCATCCGGCCCGAGATATAGATCATGGAGCAATGAGCACCAAGGGTCGCAATATATTCAAAGTCAACCGTCACATGTTACCAGCAGTAGCAGGCAATCAAATGAAGCAGTGCATGTAGAGAAACGGCGGAAGTTGGAAGAGGATTCATCTCTACAAGGGTTTCCATCGGGCGATTTGAAGCAATTACTGATTGCATGTGCCAAAGCCATGGCAGAAAACAACACAGAAGATTTTGACCGATTGATAGGAACGGCTAGAAATGCTGTGTCTATCAATGGGGAACCAATCCAGAGGCTAGGTGCTTATATGGTAGAAGGTCTTGTTGCAAGGACGGAAGCATCAGGGAATAGTATCTATCATGCCCTTAAGTGCAGAGAGCCTGAAGGCGAAGAATTACTCACTTACATGCAACTGCTTTTCGAAATCTGTCCCTACTTAAAATTTGGTTACATGGCTGCCAATGGAGCCATTGCTGAAGCTTGCAGGAATGAGGATCACATACACATCATAGACTTTCAGATTGCTCAAGGAACTCAATGGATGACACTTCTTCAAGCTCTTGCCGCAAGACCTGGCGGGGCACCCCACGTGCGGATCACAGGAATCGACGATCCGGTCTCTAAATATGCCCGTGGCAAGGGACTAGAAGTAGTTGGAGAGAGATTGTCCTTGATGTCTAAGAAATTCGGCATCCCGGTTGAGTTTCATGGGATTCCTGTTTTCGGTCCAGATGTGACAAGAGACATGCTTGATATCAGACACGGAGAAGCTTTGGCGGTGAATTTTCCACTGCAACTCCATCACACAGCTGATGAGAGTGTTGATGTGAATAATCCAAGGGATGGACTTTTGAGATTGGTGAAGTCTCTCTCTCCTAAAGTGGTCACCCTTGTGGAGCAAGAATCAAACACAAACACAACACCTTTCTTCAACAGGTTCATAGAAACTTTAGATTACTACTTGGCAATCTTCGAGTCCATCGATGTCACCCTCTCAAGAAATAGCAAGGAGAGGATTAATGTGGAGCAGCATTGTTTGGCTCGGGATATCGTCAATGTCATTGCATGCGAAGGTAACGAAAGGGTCGAGCGACACGAACTACTTGGTAAGTGGAAGTCTAGGTTGACAATGGCTGGATTTCGTCAATGTCCTTTGAGTTCTTATGTGAATTCTGTTATAAGAAGCCTTCTGAGATGCTATTCAGAGCACTATACACTAGTTGAGAAAGATGGGGCAATGCTCTTAGGGTGGAAGAACAGAAATTTGATATCTGCTTCAGCTTGGCATTGA

Protein sequence

>Msa0296470

MDSQQLYSYSMSNAGLPYMSSFPSLPNGLLGSLKVGFGNSPDSPFSSHFDSDTLSAFSDSHEQHNSGEILSGISPSYNSSLETNHYTQRSFSSINSLKDSLQLYSARNSFLPSNQKIRHALLELETALMAPDDNEVTTSNSSLGESIKETASGPRYRSWSNEHQGSQYIQSQPSHVTSSSRQSNEAVHVEKRRKLEEDSSLQGFPSGDLKQLLIACAKAMAENNTEDFDRLIGTARNAVSINGEPIQRLGAYMVEGLVARTEASGNSIYHALKCREPEGEELLTYMQLLFEICPYLKFGYMAANGAIAEACRNEDHIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSKYARGKGLEVVGERLSLMSKKFGIPVEFHGIPVFGPDVTRDMLDIRHGEALAVNFPLQLHHTADESVDVNNPRDGLLRLVKSLSPKVVTLVEQESNTNTTPFFNRFIETLDYYLAIFESIDVTLSRNSKERINVEQHCLARDIVNVIACEGNERVERHELLGKWKSRLTMAGFRQCPLSSYVNSVIRSLLRCYSEHYTLVEKDGAMLLGWKNRNLISASAWH*