Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298150 | XP_003596823.1 | 96.129 | 155 | 6 | 0 | 6 | 160 | 1 | 155 | 7.15e-106 | 309 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298150 | sp|P27788|FER3_MAIZE | 63.158 | 152 | 56 | 0 | 9 | 160 | 1 | 152 | 5.32e-64 | 196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298150 | G7ITT5 | 96.129 | 155 | 6 | 0 | 6 | 160 | 1 | 155 | 3.41e-106 | 309 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0258790 | Msa0298150 | 0.858478 | 8.012631e-63 | -8.615850e-47 |
| Msa0298150 | Msa0335960 | 0.989596 | 8.373501e-179 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298150 | MtrunA17_Chr2g0321501 | 96.129 | 155 | 6 | 0 | 6 | 160 | 1 | 155 | 6.57e-110 | 309 |
| Msa0298150 | MtrunA17_Chr4g0026331 | 73.548 | 155 | 41 | 0 | 6 | 160 | 1 | 155 | 2.89e-83 | 242 |
| Msa0298150 | MtrunA17_Chr1g0210631 | 63.750 | 160 | 52 | 2 | 1 | 160 | 65 | 218 | 3.30e-66 | 201 |
| Msa0298150 | MtrunA17_Chr1g0210661 | 71.756 | 131 | 36 | 1 | 29 | 159 | 24 | 153 | 3.07e-64 | 193 |
| Msa0298150 | MtrunA17_Chr8g0380641 | 60.976 | 123 | 46 | 2 | 38 | 159 | 25 | 146 | 1.92e-48 | 153 |
| Msa0298150 | MtrunA17_Chr2g0277481 | 59.504 | 121 | 45 | 2 | 42 | 159 | 29 | 148 | 9.02e-48 | 152 |
| Msa0298150 | MtrunA17_Chr5g0394481 | 40.404 | 99 | 57 | 2 | 61 | 159 | 47 | 143 | 1.89e-21 | 84.7 |
| Msa0298150 | MtrunA17_Chr4g0054691 | 28.571 | 147 | 100 | 3 | 18 | 160 | 14 | 159 | 3.47e-16 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298150 | AT2G27510.1 | 60.870 | 161 | 56 | 3 | 1 | 160 | 1 | 155 | 3.51e-64 | 194 |
| Msa0298150 | AT1G60950.1 | 66.667 | 117 | 36 | 2 | 45 | 159 | 32 | 147 | 2.64e-50 | 158 |
| Msa0298150 | AT1G10960.1 | 67.544 | 114 | 34 | 2 | 45 | 156 | 32 | 144 | 1.39e-47 | 151 |
| Msa0298150 | AT5G10000.1 | 57.143 | 112 | 46 | 1 | 50 | 159 | 36 | 147 | 7.57e-44 | 142 |
| Msa0298150 | AT4G14890.1 | 45.263 | 95 | 50 | 2 | 65 | 159 | 52 | 144 | 3.87e-22 | 87.0 |
| Msa0298150 | AT1G32550.1 | 39.535 | 86 | 52 | 0 | 75 | 160 | 69 | 154 | 7.35e-18 | 76.6 |
| Msa0298150 | AT1G32550.2 | 37.255 | 102 | 45 | 3 | 75 | 160 | 69 | 167 | 3.24e-13 | 64.7 |
Find 38 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGCTGGGAAGGTTGTTTC+TGG | 0.160515 | 2_3:+52075973 | Msa0298150:CDS |
| TCTCGATGACAATCAATTAA+AGG | 0.218310 | 2_3:+52076023 | Msa0298150:CDS |
| CGGCAGTAGTGAATTGATTT+TGG | 0.237516 | 2_3:-52075714 | None:intergenic |
| AAGAATGTTTCACGATCTTT+TGG | 0.297059 | 2_3:+52075772 | Msa0298150:CDS |
| GGAGCATGCTCTACCTGTGC+TGG | 0.371691 | 2_3:+52075958 | Msa0298150:CDS |
| TAGATGAAGCAGATGACTTC+AGG | 0.402843 | 2_3:-52075795 | None:intergenic |
| CAAAATTAAGCTGATTGGTC+CGG | 0.411846 | 2_3:+52075840 | Msa0298150:CDS |
| TGAAGTCATCTGCTTCATCT+AGG | 0.420369 | 2_3:+52075797 | Msa0298150:CDS |
| GCTTACAAAATTAAGCTGAT+TGG | 0.422819 | 2_3:+52075835 | Msa0298150:CDS |
| CTTCCGTATTCATGCCGTGC+TGG | 0.464676 | 2_3:+52075937 | Msa0298150:CDS |
| TGAATAACACAGTCTGAAGT+TGG | 0.477269 | 2_3:-52076075 | None:intergenic |
| TAAGCATAACAAACCAGGTC+TGG | 0.479662 | 2_3:-52076190 | None:intergenic |
| GCTCCAGCACGGCATGAATA+CGG | 0.486288 | 2_3:-52075940 | None:intergenic |
| AGATAATGTGCGCTGTTGCT+TGG | 0.490262 | 2_3:+52076291 | Msa0298150:three_prime_UTR |
| GTCAAGTGCCCTTCCACTCT+AGG | 0.511274 | 2_3:+52075742 | Msa0298150:CDS |
| ATGCTCTACCTGTGCTGGGA+AGG | 0.518844 | 2_3:+52075963 | Msa0298150:CDS |
| GAGCATGCTCTACCTGTGCT+GGG | 0.533531 | 2_3:+52075959 | Msa0298150:CDS |
| GAAGTCATCTGCTTCATCTA+GGG | 0.543475 | 2_3:+52075798 | Msa0298150:CDS |
| GTCAGCCTTGTCAACTGTGA+AGG | 0.544738 | 2_3:+52075660 | Msa0298150:CDS |
| TTCGCAGATCCTAGAGTGGA+AGG | 0.547384 | 2_3:-52075751 | None:intergenic |
| TTCATCTAGGGTTACTGCAG+TGG | 0.553859 | 2_3:+52075810 | Msa0298150:CDS |
| GGTTCTGTCGATCAGTCAGA+TGG | 0.558348 | 2_3:+52075994 | Msa0298150:CDS |
| GTTATTCATACGCACAAAGA+AGG | 0.560127 | 2_3:+52076090 | Msa0298150:CDS |
| ATTAAGCTGATTGGTCCGGA+TGG | 0.560404 | 2_3:+52075844 | Msa0298150:CDS |
| AGAAACAACCTTCCCAGCAC+AGG | 0.578473 | 2_3:-52075971 | None:intergenic |
| TTAGATGCAGCAGAGAATGC+CGG | 0.589828 | 2_3:+52075907 | Msa0298150:CDS |
| GATGACAATCAATTAAAGGA+AGG | 0.602977 | 2_3:+52076027 | Msa0298150:CDS |
| TTAGACATTACAGCCAGACC+TGG | 0.611763 | 2_3:+52076177 | Msa0298150:three_prime_UTR |
| GGAAGGGCACTTGACTGTTG+CGG | 0.612607 | 2_3:-52075734 | None:intergenic |
| AGGTAGAGCATGCTCCAGCA+CGG | 0.616285 | 2_3:-52075951 | None:intergenic |
| CATACAGAAAATCATCGAAG+AGG | 0.617843 | 2_3:-52076333 | None:intergenic |
| TGAAGTTGGATAAGCTACAC+AGG | 0.630428 | 2_3:-52076061 | None:intergenic |
| AAAACCTGTGCCCTTGTTGG+GGG | 0.644764 | 2_3:+52076138 | Msa0298150:three_prime_UTR |
| TGAATACGGAAGTTCAACTC+CGG | 0.648667 | 2_3:-52075926 | None:intergenic |
| GTAAACCTTCACAGTTGACA+AGG | 0.652422 | 2_3:-52075665 | None:intergenic |
| TCGCAGATCCTAGAGTGGAA+GGG | 0.653095 | 2_3:-52075750 | None:intergenic |
| ACATATAAGCATAACAAACC+AGG | 0.675316 | 2_3:-52076195 | None:intergenic |
| ATTCTTCGCAGATCCTAGAG+TGG | 0.678656 | 2_3:-52075755 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATTCAACTTTTTTAAAT+TGG | + | chr2_3:52074282-52074301 | Msa0298150:intron | 10.0% |
| !! | AATAAATTATCTAATGATAT+TGG | + | chr2_3:52074671-52074690 | Msa0298150:intron | 10.0% |
| !!! | ATAAGGTATTTATATAACAA+AGG | - | chr2_3:52074898-52074917 | None:intergenic | 15.0% |
| !! | ATTAAGTTCTTTATTCAAAT+AGG | + | chr2_3:52074963-52074982 | Msa0298150:intron | 15.0% |
| !!! | AAATAAACTGTTTAACATTT+TGG | + | chr2_3:52075343-52075362 | Msa0298150:intron | 15.0% |
| !! | AATTGAATTGATATTACAAA+TGG | - | chr2_3:52075627-52075646 | None:intergenic | 15.0% |
| !! | TATATAACAACGATATGATA+TGG | - | chr2_3:52074010-52074029 | None:intergenic | 20.0% |
| !!! | ACTTTTTTAAATTGGATAAG+AGG | + | chr2_3:52074290-52074309 | Msa0298150:intron | 20.0% |
| !!! | TACATTCATAGTTTAATTTC+AGG | + | chr2_3:52074428-52074447 | Msa0298150:intron | 20.0% |
| !!! | AAACTATAAGTTGTTTTCAT+CGG | - | chr2_3:52074853-52074872 | None:intergenic | 20.0% |
| !! | TTGTCTATGTTAAAGATAAA+AGG | - | chr2_3:52075005-52075024 | None:intergenic | 20.0% |
| !! | TGTAATATCAATTCAATTTC+AGG | + | chr2_3:52075629-52075648 | Msa0298150:intron | 20.0% |
| !! | GTAATATCAATTCAATTTCA+GGG | + | chr2_3:52075630-52075649 | Msa0298150:intron | 20.0% |
| !!! | TTTTAAGTTATGTACGATAA+TGG | + | chr2_3:52076221-52076240 | Msa0298150:three_prime_UTR | 20.0% |
| ! | CTAAGAATTAAGGATTCATT+TGG | + | chr2_3:52074188-52074207 | Msa0298150:intron | 25.0% |
| ! | ACTAATAAAATGCATCTGTA+AGG | + | chr2_3:52074500-52074519 | Msa0298150:intron | 25.0% |
| !! | AATTCATTTTCTTTTCCATC+CGG | - | chr2_3:52075862-52075881 | None:intergenic | 25.0% |
| ! | ATAGATTATCTCCTCCTTTT+TGG | - | chr2_3:52073877-52073896 | None:intergenic | 30.0% |
| ! | GTAATGGAAAAACTTACTGT+TGG | - | chr2_3:52073988-52074007 | None:intergenic | 30.0% |
| ACAACGATATGATATGGTAA+TGG | - | chr2_3:52074004-52074023 | None:intergenic | 30.0% | |
| !! | ACTATCTGCTCTAAGAATTA+AGG | + | chr2_3:52074178-52074197 | Msa0298150:intron | 30.0% |
| ATGTTTATGATGTCTTAGCT+CGG | - | chr2_3:52074409-52074428 | None:intergenic | 30.0% | |
| ! | CAGATGCATTTTATTAGTGT+TGG | - | chr2_3:52074498-52074517 | None:intergenic | 30.0% |
| CTCACAAATATTTATGTCAC+TGG | - | chr2_3:52074748-52074767 | None:intergenic | 30.0% | |
| AGACTACTTCGAAAAGTTTA+TGG | + | chr2_3:52074766-52074785 | Msa0298150:intron | 30.0% | |
| TATAGTTCAGTTCTTTGGTT+GGG | + | chr2_3:52075054-52075073 | Msa0298150:intron | 30.0% | |
| AATTCGATGTCTAACTAAGA+GGG | - | chr2_3:52075154-52075173 | None:intergenic | 30.0% | |
| TCTTAGTTAGACATCGAATT+CGG | + | chr2_3:52075154-52075173 | Msa0298150:intron | 30.0% | |
| ! | TCATTTATTCCTTTTGTGTG+TGG | + | chr2_3:52075269-52075288 | Msa0298150:intron | 30.0% |
| ATCTTATACAAAACACAGCA+GGG | - | chr2_3:52075603-52075622 | None:intergenic | 30.0% | |
| ! | AAGAATGTTTCACGATCTTT+TGG | + | chr2_3:52075772-52075791 | Msa0298150:CDS | 30.0% |
| GCTTACAAAATTAAGCTGAT+TGG | + | chr2_3:52075835-52075854 | Msa0298150:CDS | 30.0% | |
| TCTCGATGACAATCAATTAA+AGG | + | chr2_3:52076023-52076042 | Msa0298150:CDS | 30.0% | |
| GATGACAATCAATTAAAGGA+AGG | + | chr2_3:52076027-52076046 | Msa0298150:CDS | 30.0% | |
| ! | TTGGGAGAAATTTTCAATAG+AGG | - | chr2_3:52076119-52076138 | None:intergenic | 30.0% |
| ACATATAAGCATAACAAACC+AGG | - | chr2_3:52076198-52076217 | None:intergenic | 30.0% | |
| !!! | TATCTCCTCCTTTTTGGTTT+GGG | - | chr2_3:52073871-52073890 | None:intergenic | 35.0% |
| !!! | TTATCTCCTCCTTTTTGGTT+TGG | - | chr2_3:52073872-52073891 | None:intergenic | 35.0% |
| !!! | AAGAAGGCGTTTTGTATTGT+CGG | - | chr2_3:52073955-52073974 | None:intergenic | 35.0% |
| !!! | CCTAACAATGTCGGTTTTAT+GGG | - | chr2_3:52074536-52074555 | None:intergenic | 35.0% |
| CGGTTATCTTGTAAAGCTTA+TGG | - | chr2_3:52074833-52074852 | None:intergenic | 35.0% | |
| CATGCAAGTGCTTACTTATA+AGG | - | chr2_3:52074915-52074934 | None:intergenic | 35.0% | |
| GTAGGTATAGTTCAGTTCTT+TGG | + | chr2_3:52075049-52075068 | Msa0298150:intron | 35.0% | |
| GTATAGTTCAGTTCTTTGGT+TGG | + | chr2_3:52075053-52075072 | Msa0298150:intron | 35.0% | |
| GAATTCGATGTCTAACTAAG+AGG | - | chr2_3:52075155-52075174 | None:intergenic | 35.0% | |
| TCTTATACAAAACACAGCAG+GGG | - | chr2_3:52075602-52075621 | None:intergenic | 35.0% | |
| CATCTTATACAAAACACAGC+AGG | - | chr2_3:52075604-52075623 | None:intergenic | 35.0% | |
| ! | CAAAATTAAGCTGATTGGTC+CGG | + | chr2_3:52075840-52075859 | Msa0298150:CDS | 35.0% |
| ! | TGAATAACACAGTCTGAAGT+TGG | - | chr2_3:52076078-52076097 | None:intergenic | 35.0% |
| GTTATTCATACGCACAAAGA+AGG | + | chr2_3:52076090-52076109 | Msa0298150:CDS | 35.0% | |
| CTTTCGTTCAATCGTTCGTT+TGG | + | chr2_3:52073899-52073918 | Msa0298150:intron | 40.0% | |
| ! | TGTTGGTGAAACGATGAAGA+AGG | - | chr2_3:52073971-52073990 | None:intergenic | 40.0% |
| TGGGACGAACGTCAAATTAA+TGG | - | chr2_3:52074364-52074383 | None:intergenic | 40.0% | |
| ! | TTAATTTGACGTTCGTCCCA+AGG | + | chr2_3:52074364-52074383 | Msa0298150:intron | 40.0% |
| !! | GAGTTTGGTCTTGTAACCTT+GGG | - | chr2_3:52074383-52074402 | None:intergenic | 40.0% |
| !! | AGAGTTTGGTCTTGTAACCT+TGG | - | chr2_3:52074384-52074403 | None:intergenic | 40.0% |
| !! | TCGGTTTTATGGGTTGTGTT+AGG | - | chr2_3:52074526-52074545 | None:intergenic | 40.0% |
| CCCATAAAACCGACATTGTT+AGG | + | chr2_3:52074533-52074552 | Msa0298150:intron | 40.0% | |
| !!! | GCCTAACAATGTCGGTTTTA+TGG | - | chr2_3:52074537-52074556 | None:intergenic | 40.0% |
| TAAAACCGACATTGTTAGGC+TGG | + | chr2_3:52074537-52074556 | Msa0298150:intron | 40.0% | |
| AAAACCGACATTGTTAGGCT+GGG | + | chr2_3:52074538-52074557 | Msa0298150:intron | 40.0% | |
| ! | ACTCGACATTTTCCACTTTG+TGG | + | chr2_3:52074586-52074605 | Msa0298150:intron | 40.0% |
| ! | CTCGACATTTTCCACTTTGT+GGG | + | chr2_3:52074587-52074606 | Msa0298150:intron | 40.0% |
| TGCATCGAAAAGAACTTCAC+TGG | - | chr2_3:52074698-52074717 | None:intergenic | 40.0% | |
| GTGTGTAGATTGTAGACAGT+AGG | + | chr2_3:52075031-52075050 | Msa0298150:intron | 40.0% | |
| AACATGCTTGCACACAAGAA+GGG | - | chr2_3:52075104-52075123 | None:intergenic | 40.0% | |
| AAACATGCTTGCACACAAGA+AGG | - | chr2_3:52075105-52075124 | None:intergenic | 40.0% | |
| ! | AACTAAGAGGGATTCTGGAA+AGG | - | chr2_3:52075142-52075161 | None:intergenic | 40.0% |
| TGTCTAACTAAGAGGGATTC+TGG | - | chr2_3:52075147-52075166 | None:intergenic | 40.0% | |
| TCGGTAGGATCAAAAGAACT+GGG | + | chr2_3:52075221-52075240 | Msa0298150:intron | 40.0% | |
| TCATGCAATCCACACACAAA+AGG | - | chr2_3:52075281-52075300 | None:intergenic | 40.0% | |
| AATAACTCGATTGCTACAGC+AGG | - | chr2_3:52075468-52075487 | None:intergenic | 40.0% | |
| AACAACAGTAGAAAGCAAGC+TGG | - | chr2_3:52075544-52075563 | None:intergenic | 40.0% | |
| GTAAACCTTCACAGTTGACA+AGG | - | chr2_3:52075668-52075687 | None:intergenic | 40.0% | |
| !!! | CAGTTTTAAGCGTGCAATAG+CGG | - | chr2_3:52075690-52075709 | None:intergenic | 40.0% |
| !! | CGGCAGTAGTGAATTGATTT+TGG | - | chr2_3:52075717-52075736 | None:intergenic | 40.0% |
| TAGATGAAGCAGATGACTTC+AGG | - | chr2_3:52075798-52075817 | None:intergenic | 40.0% | |
| TGAAGTCATCTGCTTCATCT+AGG | + | chr2_3:52075797-52075816 | Msa0298150:CDS | 40.0% | |
| GAAGTCATCTGCTTCATCTA+GGG | + | chr2_3:52075798-52075817 | Msa0298150:CDS | 40.0% | |
| TGAATACGGAAGTTCAACTC+CGG | - | chr2_3:52075929-52075948 | None:intergenic | 40.0% | |
| TGAAGTTGGATAAGCTACAC+AGG | - | chr2_3:52076064-52076083 | None:intergenic | 40.0% | |
| TAAGCATAACAAACCAGGTC+TGG | - | chr2_3:52076193-52076212 | None:intergenic | 40.0% | |
| !!! | CTCCTTTTTGGTTTGGGCTT+GGG | - | chr2_3:52073865-52073884 | None:intergenic | 45.0% |
| CATCGTTGTACTGTGAAGAC+AGG | + | chr2_3:52074153-52074172 | Msa0298150:intron | 45.0% | |
| GTCTTAGCTCGGTAAGAGTT+TGG | - | chr2_3:52074398-52074417 | None:intergenic | 45.0% | |
| TGTGGGTGTGTGTGAGTTTA+TGG | + | chr2_3:52074604-52074623 | Msa0298150:intron | 45.0% | |
| GACATCGAATTCGGACCTAA+TGG | + | chr2_3:52075163-52075182 | Msa0298150:intron | 45.0% | |
| ATCGAATTCGGACCTAATGG+AGG | + | chr2_3:52075166-52075185 | Msa0298150:intron | 45.0% | |
| AATTCGGACCTAATGGAGGT+TGG | + | chr2_3:52075170-52075189 | Msa0298150:intron | 45.0% | |
| CTCACAATCCAACCTCCATT+AGG | - | chr2_3:52075181-52075200 | None:intergenic | 45.0% | |
| TAGTCGACCCTGTTAAGACT+CGG | + | chr2_3:52075202-52075221 | Msa0298150:intron | 45.0% | |
| GATCCTACCGAGTCTTAACA+GGG | - | chr2_3:52075212-52075231 | None:intergenic | 45.0% | |
| TGATCCTACCGAGTCTTAAC+AGG | - | chr2_3:52075213-52075232 | None:intergenic | 45.0% | |
| CTCGGTAGGATCAAAAGAAC+TGG | + | chr2_3:52075220-52075239 | Msa0298150:intron | 45.0% | |
| ATTCTTCGCAGATCCTAGAG+TGG | - | chr2_3:52075758-52075777 | None:intergenic | 45.0% | |
| ! | TTCATCTAGGGTTACTGCAG+TGG | + | chr2_3:52075810-52075829 | Msa0298150:CDS | 45.0% |
| ! | ATTAAGCTGATTGGTCCGGA+TGG | + | chr2_3:52075844-52075863 | Msa0298150:CDS | 45.0% |
| TTAGATGCAGCAGAGAATGC+CGG | + | chr2_3:52075907-52075926 | Msa0298150:CDS | 45.0% | |
| !! | CAACAAGGGCACAGGTTTTT+GGG | - | chr2_3:52076137-52076156 | None:intergenic | 45.0% |
| CAAAAACCTGTGCCCTTGTT+GGG | + | chr2_3:52076136-52076155 | Msa0298150:three_prime_UTR | 45.0% | |
| AAAAACCTGTGCCCTTGTTG+GGG | + | chr2_3:52076137-52076156 | Msa0298150:three_prime_UTR | 45.0% | |
| TTAGACATTACAGCCAGACC+TGG | + | chr2_3:52076177-52076196 | Msa0298150:three_prime_UTR | 45.0% | |
| AGATAATGTGCGCTGTTGCT+TGG | + | chr2_3:52076291-52076310 | Msa0298150:three_prime_UTR | 45.0% | |
| !! | TTTGGTTTGGGCTTGGGCTT+GGG | - | chr2_3:52073859-52073878 | None:intergenic | 50.0% |
| !!! | TTTTGGTTTGGGCTTGGGCT+TGG | - | chr2_3:52073860-52073879 | None:intergenic | 50.0% |
| AGCCCAAGCCCAAACCAAAA+AGG | + | chr2_3:52073860-52073879 | Msa0298150:intron | 50.0% | |
| !!! | CCTCCTTTTTGGTTTGGGCT+TGG | - | chr2_3:52073866-52073885 | None:intergenic | 50.0% |
| CCAAGCCCAAACCAAAAAGG+AGG | + | chr2_3:52073863-52073882 | Msa0298150:intron | 50.0% | |
| !! | TTGTATTGTCGGAGAGCGCT+GGG | - | chr2_3:52073944-52073963 | None:intergenic | 50.0% |
| ! | TTTGTATTGTCGGAGAGCGC+TGG | - | chr2_3:52073945-52073964 | None:intergenic | 50.0% |
| GATGCCCAGCCTAACAATGT+CGG | - | chr2_3:52074545-52074564 | None:intergenic | 50.0% | |
| ACTCACACACACCCACAAAG+TGG | - | chr2_3:52074601-52074620 | None:intergenic | 50.0% | |
| GGGTGTGTGTGAGTTTATGG+TGG | + | chr2_3:52074607-52074626 | Msa0298150:intron | 50.0% | |
| ACTCGATTGCTACAGCAGGT+AGG | - | chr2_3:52075464-52075483 | None:intergenic | 50.0% | |
| ! | GTCAGCCTTGTCAACTGTGA+AGG | + | chr2_3:52075660-52075679 | Msa0298150:CDS | 50.0% |
| TCGCAGATCCTAGAGTGGAA+GGG | - | chr2_3:52075753-52075772 | None:intergenic | 50.0% | |
| TTCGCAGATCCTAGAGTGGA+AGG | - | chr2_3:52075754-52075773 | None:intergenic | 50.0% | |
| AGAAACAACCTTCCCAGCAC+AGG | - | chr2_3:52075974-52075993 | None:intergenic | 50.0% | |
| ! | TGTGCTGGGAAGGTTGTTTC+TGG | + | chr2_3:52075973-52075992 | Msa0298150:CDS | 50.0% |
| GGTTCTGTCGATCAGTCAGA+TGG | + | chr2_3:52075994-52076013 | Msa0298150:CDS | 50.0% | |
| !! | CCAACAAGGGCACAGGTTTT+TGG | - | chr2_3:52076138-52076157 | None:intergenic | 50.0% |
| CCAAAAACCTGTGCCCTTGT+TGG | + | chr2_3:52076135-52076154 | Msa0298150:three_prime_UTR | 50.0% | |
| AAAACCTGTGCCCTTGTTGG+GGG | + | chr2_3:52076138-52076157 | Msa0298150:three_prime_UTR | 50.0% | |
| CTCGAAATCTCCCCCAACAA+GGG | - | chr2_3:52076151-52076170 | None:intergenic | 50.0% | |
| ACTCGAAATCTCCCCCAACA+AGG | - | chr2_3:52076152-52076171 | None:intergenic | 50.0% | |
| GTTAGGCTGGGCATCTTTCG+TGG | + | chr2_3:52074550-52074569 | Msa0298150:intron | 55.0% | |
| TGGGCATCTTTCGTGGTGTC+AGG | + | chr2_3:52074557-52074576 | Msa0298150:intron | 55.0% | |
| ! | GGGCATCTTTCGTGGTGTCA+GGG | + | chr2_3:52074558-52074577 | Msa0298150:intron | 55.0% |
| ! | CGACCCTGTTAAGACTCGGT+AGG | + | chr2_3:52075206-52075225 | Msa0298150:intron | 55.0% |
| !! | GGAAGGGCACTTGACTGTTG+CGG | - | chr2_3:52075737-52075756 | None:intergenic | 55.0% |
| GTCAAGTGCCCTTCCACTCT+AGG | + | chr2_3:52075742-52075761 | Msa0298150:CDS | 55.0% | |
| CTTCCGTATTCATGCCGTGC+TGG | + | chr2_3:52075937-52075956 | Msa0298150:CDS | 55.0% | |
| GCTCCAGCACGGCATGAATA+CGG | - | chr2_3:52075943-52075962 | None:intergenic | 55.0% | |
| AGGTAGAGCATGCTCCAGCA+CGG | - | chr2_3:52075954-52075973 | None:intergenic | 55.0% | |
| GAGCATGCTCTACCTGTGCT+GGG | + | chr2_3:52075959-52075978 | Msa0298150:CDS | 55.0% | |
| ATGCTCTACCTGTGCTGGGA+AGG | + | chr2_3:52075963-52075982 | Msa0298150:CDS | 55.0% | |
| GGAGCATGCTCTACCTGTGC+TGG | + | chr2_3:52075958-52075977 | Msa0298150:CDS | 60.0% | |
| ! | ATCTCCCCCAACAAGGGCAC+AGG | - | chr2_3:52076145-52076164 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 52073811 | 52076353 | 52073811 | ID=Msa0298150;Name=Msa0298150 |
| chr2_3 | mRNA | 52073811 | 52076353 | 52073811 | ID=Msa0298150-mRNA-1;Parent=Msa0298150;Name=Msa0298150-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0.5|0.5|0|0.5|2|228|160 |
| chr2_3 | exon | 52073811 | 52073818 | 52073811 | ID=Msa0298150-mRNA-1:exon:16565;Parent=Msa0298150-mRNA-1 |
| chr2_3 | exon | 52075651 | 52076353 | 52075651 | ID=Msa0298150-mRNA-1:exon:16566;Parent=Msa0298150-mRNA-1 |
| chr2_3 | CDS | 52073811 | 52073818 | 52073811 | ID=Msa0298150-mRNA-1:cds;Parent=Msa0298150-mRNA-1 |
| chr2_3 | CDS | 52075651 | 52076125 | 52075651 | ID=Msa0298150-mRNA-1:cds;Parent=Msa0298150-mRNA-1 |
| chr2_3 | three_prime_UTR | 52076126 | 52076353 | 52076126 | ID=Msa0298150-mRNA-1:three_prime_utr;Parent=Msa0298150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
