Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258790 | XP_003596823.1 | 96.129 | 155 | 6 | 0 | 6 | 160 | 1 | 155 | 7.15e-106 | 309 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258790 | sp|P27788|FER3_MAIZE | 63.158 | 152 | 56 | 0 | 9 | 160 | 1 | 152 | 5.32e-64 | 196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258790 | G7ITT5 | 96.129 | 155 | 6 | 0 | 6 | 160 | 1 | 155 | 3.41e-106 | 309 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0258790 | Msa0298150 | 0.858478 | 8.012631e-63 | -8.615850e-47 |
| Msa0258790 | Msa0300470 | 0.804847 | 1.774611e-49 | -8.615850e-47 |
| Msa0258790 | Msa0335960 | 0.861545 | 9.514670e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258790 | MtrunA17_Chr2g0321501 | 96.129 | 155 | 6 | 0 | 6 | 160 | 1 | 155 | 6.57e-110 | 309 |
| Msa0258790 | MtrunA17_Chr4g0026331 | 73.548 | 155 | 41 | 0 | 6 | 160 | 1 | 155 | 2.89e-83 | 242 |
| Msa0258790 | MtrunA17_Chr1g0210631 | 63.750 | 160 | 52 | 2 | 1 | 160 | 65 | 218 | 3.30e-66 | 201 |
| Msa0258790 | MtrunA17_Chr1g0210661 | 71.756 | 131 | 36 | 1 | 29 | 159 | 24 | 153 | 3.07e-64 | 193 |
| Msa0258790 | MtrunA17_Chr8g0380641 | 60.976 | 123 | 46 | 2 | 38 | 159 | 25 | 146 | 1.92e-48 | 153 |
| Msa0258790 | MtrunA17_Chr2g0277481 | 59.504 | 121 | 45 | 2 | 42 | 159 | 29 | 148 | 9.02e-48 | 152 |
| Msa0258790 | MtrunA17_Chr5g0394481 | 40.404 | 99 | 57 | 2 | 61 | 159 | 47 | 143 | 1.89e-21 | 84.7 |
| Msa0258790 | MtrunA17_Chr4g0054691 | 28.571 | 147 | 100 | 3 | 18 | 160 | 14 | 159 | 3.47e-16 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258790 | AT2G27510.1 | 60.870 | 161 | 56 | 3 | 1 | 160 | 1 | 155 | 3.51e-64 | 194 |
| Msa0258790 | AT1G60950.1 | 66.667 | 117 | 36 | 2 | 45 | 159 | 32 | 147 | 2.64e-50 | 158 |
| Msa0258790 | AT1G10960.1 | 67.544 | 114 | 34 | 2 | 45 | 156 | 32 | 144 | 1.39e-47 | 151 |
| Msa0258790 | AT5G10000.1 | 57.143 | 112 | 46 | 1 | 50 | 159 | 36 | 147 | 7.57e-44 | 142 |
| Msa0258790 | AT4G14890.1 | 45.263 | 95 | 50 | 2 | 65 | 159 | 52 | 144 | 3.87e-22 | 87.0 |
| Msa0258790 | AT1G32550.1 | 39.535 | 86 | 52 | 0 | 75 | 160 | 69 | 154 | 7.35e-18 | 76.6 |
| Msa0258790 | AT1G32550.2 | 37.255 | 102 | 45 | 3 | 75 | 160 | 69 | 167 | 3.24e-13 | 64.7 |
Find 45 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCCATGGGCACGGGTTTC+TGG | 0.042588 | 2_2:-55421122 | None:intergenic |
| CTCGGTTTGTTATGCTTATA+TGG | 0.104616 | 2_2:+55421179 | Msa0258790:three_prime_UTR |
| TGTGCTGGGAAGGTTGTTTC+TGG | 0.160515 | 2_2:+55420960 | Msa0258790:CDS |
| TCTCGATGACAATCAATTAA+AGG | 0.218310 | 2_2:+55421010 | Msa0258790:CDS |
| CGGCAGTAGTGAATTGATTT+TGG | 0.237516 | 2_2:-55420701 | None:intergenic |
| AAGAATGTTTCACGATCTTT+TGG | 0.297059 | 2_2:+55420759 | Msa0258790:CDS |
| TAAGCATAACAAACCGAGTT+TGG | 0.367993 | 2_2:-55421174 | None:intergenic |
| GGAGCATGCTCTACCTGTGC+TGG | 0.371691 | 2_2:+55420945 | Msa0258790:CDS |
| CCGTGCCCATGGAGGAGATT+TGG | 0.377628 | 2_2:+55421130 | Msa0258790:three_prime_UTR |
| TAGATGAAGCAGATGACTTC+AGG | 0.402843 | 2_2:-55420782 | None:intergenic |
| CAAAATTAAGCTGATTGGTC+CGG | 0.411846 | 2_2:+55420827 | Msa0258790:CDS |
| TCGGTTTGTTATGCTTATAT+GGG | 0.418732 | 2_2:+55421180 | Msa0258790:three_prime_UTR |
| TGAAGTCATCTGCTTCATCT+AGG | 0.420369 | 2_2:+55420784 | Msa0258790:CDS |
| GCTTACAAAATTAAGCTGAT+TGG | 0.422819 | 2_2:+55420822 | Msa0258790:CDS |
| CTTCCGTATTCATGCCGTGC+TGG | 0.464676 | 2_2:+55420924 | Msa0258790:CDS |
| TGAATAACACAGTCTGAAGT+TGG | 0.477269 | 2_2:-55421062 | None:intergenic |
| GCTCCAGCACGGCATGAATA+CGG | 0.486288 | 2_2:-55420927 | None:intergenic |
| GTAAACCTTCACAGTTGATA+AGG | 0.489067 | 2_2:-55420652 | None:intergenic |
| AGATAATGTGTGCTGTTGCT+TGG | 0.500964 | 2_2:+55421275 | Msa0258790:three_prime_UTR |
| CCAAATCTCCTCCATGGGCA+CGG | 0.507683 | 2_2:-55421130 | None:intergenic |
| CAAATCTCCTCCATGGGCAC+GGG | 0.509060 | 2_2:-55421129 | None:intergenic |
| GTCAAGTGCCCTTCCACTCT+AGG | 0.511274 | 2_2:+55420729 | Msa0258790:CDS |
| ATGCTCTACCTGTGCTGGGA+AGG | 0.518844 | 2_2:+55420950 | Msa0258790:CDS |
| GAGCATGCTCTACCTGTGCT+GGG | 0.533531 | 2_2:+55420946 | Msa0258790:CDS |
| AAAACTCCAAATCTCCTCCA+TGG | 0.539341 | 2_2:-55421136 | None:intergenic |
| GAAGTCATCTGCTTCATCTA+GGG | 0.543475 | 2_2:+55420785 | Msa0258790:CDS |
| TTCGCAGATCCTAGAGTGGA+AGG | 0.547384 | 2_2:-55420738 | None:intergenic |
| TTCATCTAGGGTTACTGCAG+TGG | 0.553859 | 2_2:+55420797 | Msa0258790:CDS |
| CTGCCAGAAACCCGTGCCCA+TGG | 0.554037 | 2_2:+55421119 | Msa0258790:three_prime_UTR |
| GGTTCTGTCGATCAGTCAGA+TGG | 0.558348 | 2_2:+55420981 | Msa0258790:CDS |
| ATTAAGCTGATTGGTCCGGA+TGG | 0.560404 | 2_2:+55420831 | Msa0258790:CDS |
| GTCAGCCTTATCAACTGTGA+AGG | 0.577652 | 2_2:+55420647 | Msa0258790:CDS |
| AGAAACAACCTTCCCAGCAC+AGG | 0.578473 | 2_2:-55420958 | None:intergenic |
| TTAGACATTGCAGCCAAACT+CGG | 0.579497 | 2_2:+55421161 | Msa0258790:three_prime_UTR |
| TTAGATGCAGCAGAGAATGC+CGG | 0.589828 | 2_2:+55420894 | Msa0258790:CDS |
| GTTATTCATACACACAAAGA+AGG | 0.595409 | 2_2:+55421077 | Msa0258790:CDS |
| AAACTCCAAATCTCCTCCAT+GGG | 0.597039 | 2_2:-55421135 | None:intergenic |
| GATGACAATCAATTAAAGGA+AGG | 0.602977 | 2_2:+55421014 | Msa0258790:CDS |
| GGAAGGGCACTTGACTGTTG+CGG | 0.612607 | 2_2:-55420721 | None:intergenic |
| AGGTAGAGCATGCTCCAGCA+CGG | 0.616285 | 2_2:-55420938 | None:intergenic |
| TGAAGTTGGATAAGCTACAC+AGG | 0.630428 | 2_2:-55421048 | None:intergenic |
| TGAATACGGAAGTTCAACTC+CGG | 0.648667 | 2_2:-55420913 | None:intergenic |
| TCGCAGATCCTAGAGTGGAA+GGG | 0.653095 | 2_2:-55420737 | None:intergenic |
| CCAGAAACCCGTGCCCATGG+AGG | 0.656538 | 2_2:+55421122 | Msa0258790:three_prime_UTR |
| ATTCTTCGCAGATCCTAGAG+TGG | 0.678656 | 2_2:-55420742 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATTCAACTTTTTTAAAT+TGG | + | chr2_2:55419272-55419291 | Msa0258790:intron | 10.0% |
| !! | AATAAATTATCTAATGATAT+TGG | + | chr2_2:55419659-55419678 | Msa0258790:intron | 10.0% |
| !!! | ATAAGGTATTTATATAACAA+AGG | - | chr2_2:55419886-55419905 | None:intergenic | 15.0% |
| !! | ATTAAGTTCTTTATTCAAAT+AGG | + | chr2_2:55419951-55419970 | Msa0258790:intron | 15.0% |
| !!! | AAATAAACTGTTTAACATTT+TGG | + | chr2_2:55420330-55420349 | Msa0258790:intron | 15.0% |
| !! | AATTGAATTGATATTACAAA+TGG | - | chr2_2:55420614-55420633 | None:intergenic | 15.0% |
| !! | TATATAACAACGATATGATA+TGG | - | chr2_2:55419101-55419120 | None:intergenic | 20.0% |
| !!! | ACTTTTTTAAATTGGATAAG+AGG | + | chr2_2:55419280-55419299 | Msa0258790:intron | 20.0% |
| !!! | TACATTCATAGTTTAATTTC+AGG | + | chr2_2:55419416-55419435 | Msa0258790:intron | 20.0% |
| !!! | AAACTATAAGTTGTTTTCAT+CGG | - | chr2_2:55419841-55419860 | None:intergenic | 20.0% |
| !! | TTGTCTATGTTAAAGATAAA+AGG | - | chr2_2:55419993-55420012 | None:intergenic | 20.0% |
| !! | TGTAATATCAATTCAATTTC+AGG | + | chr2_2:55420616-55420635 | Msa0258790:intron | 20.0% |
| !! | GTAATATCAATTCAATTTCA+GGG | + | chr2_2:55420617-55420636 | Msa0258790:intron | 20.0% |
| !!! | TTTTAAGTTATGTACGATAA+TGG | + | chr2_2:55421205-55421224 | Msa0258790:three_prime_UTR | 20.0% |
| ! | AGAAAAAAAGAACTTACTGT+TGG | - | chr2_2:55419060-55419079 | None:intergenic | 25.0% |
| ! | CGATGCAAAAAAAAACTATA+GGG | - | chr2_2:55419128-55419147 | None:intergenic | 25.0% |
| ! | ACGATGCAAAAAAAAACTAT+AGG | - | chr2_2:55419129-55419148 | None:intergenic | 25.0% |
| ! | CTAAGAATTAAGGATTCATT+TGG | + | chr2_2:55419178-55419197 | Msa0258790:intron | 25.0% |
| ! | ACTAATAAAATGCATCTGTA+AGG | + | chr2_2:55419488-55419507 | Msa0258790:intron | 25.0% |
| !! | TTGTTCATTTATTCCTTTTG+TGG | + | chr2_2:55420253-55420272 | Msa0258790:intron | 25.0% |
| !! | AATTCATTTTCTTTTCCATC+CGG | - | chr2_2:55420849-55420868 | None:intergenic | 25.0% |
| ! | ATAGATTATCTCCTCCTTTT+TGG | - | chr2_2:55418949-55418968 | None:intergenic | 30.0% |
| ACAACGATATGATATGGTAA+TGG | - | chr2_2:55419095-55419114 | None:intergenic | 30.0% | |
| !! | ACTATCTGCTCTAAGAATTA+AGG | + | chr2_2:55419168-55419187 | Msa0258790:intron | 30.0% |
| ATGTTTATGATGTCTTAGCT+CGG | - | chr2_2:55419397-55419416 | None:intergenic | 30.0% | |
| TAAGTCAAATCAAACATGCA+TGG | - | chr2_2:55419702-55419721 | None:intergenic | 30.0% | |
| AGACTACTTCGAAAAGTTTA+TGG | + | chr2_2:55419754-55419773 | Msa0258790:intron | 30.0% | |
| TATAGTTCAGTTCTTTGGTT+GGG | + | chr2_2:55420042-55420061 | Msa0258790:intron | 30.0% | |
| AATTCGATGTCTAACTAAGA+GGG | - | chr2_2:55420142-55420161 | None:intergenic | 30.0% | |
| TCTTAGTTAGACATCGAATT+CGG | + | chr2_2:55420142-55420161 | Msa0258790:intron | 30.0% | |
| ! | TTCATTTATTCCTTTTGTGG+TGG | + | chr2_2:55420256-55420275 | Msa0258790:intron | 30.0% |
| ATCTTATACAAAACACAGCA+GGG | - | chr2_2:55420590-55420609 | None:intergenic | 30.0% | |
| ! | AAGAATGTTTCACGATCTTT+TGG | + | chr2_2:55420759-55420778 | Msa0258790:CDS | 30.0% |
| GCTTACAAAATTAAGCTGAT+TGG | + | chr2_2:55420822-55420841 | Msa0258790:CDS | 30.0% | |
| TCTCGATGACAATCAATTAA+AGG | + | chr2_2:55421010-55421029 | Msa0258790:CDS | 30.0% | |
| GATGACAATCAATTAAAGGA+AGG | + | chr2_2:55421014-55421033 | Msa0258790:CDS | 30.0% | |
| GTTATTCATACACACAAAGA+AGG | + | chr2_2:55421077-55421096 | Msa0258790:CDS | 30.0% | |
| !! | TCGGTTTGTTATGCTTATAT+GGG | + | chr2_2:55421180-55421199 | Msa0258790:three_prime_UTR | 30.0% |
| !!! | TATCTCCTCCTTTTTGGTTT+GGG | - | chr2_2:55418943-55418962 | None:intergenic | 35.0% |
| !!! | TTATCTCCTCCTTTTTGGTT+TGG | - | chr2_2:55418944-55418963 | None:intergenic | 35.0% |
| !!! | AAGAAGGCGTTTTGTATTGT+CGG | - | chr2_2:55419027-55419046 | None:intergenic | 35.0% |
| CTCACAAATCTTTATGTCAC+TGG | - | chr2_2:55419736-55419755 | None:intergenic | 35.0% | |
| CGGTTATCTTGTAAAGCTTA+TGG | - | chr2_2:55419821-55419840 | None:intergenic | 35.0% | |
| CATGCAAGTGCTTACTTATA+AGG | - | chr2_2:55419903-55419922 | None:intergenic | 35.0% | |
| GTAGGTATAGTTCAGTTCTT+TGG | + | chr2_2:55420037-55420056 | Msa0258790:intron | 35.0% | |
| GTATAGTTCAGTTCTTTGGT+TGG | + | chr2_2:55420041-55420060 | Msa0258790:intron | 35.0% | |
| GAATTCGATGTCTAACTAAG+AGG | - | chr2_2:55420143-55420162 | None:intergenic | 35.0% | |
| TCAGTAGGATCAAAAGAACT+GGG | + | chr2_2:55420209-55420228 | Msa0258790:intron | 35.0% | |
| TCTTATACAAAACACAGCAG+GGG | - | chr2_2:55420589-55420608 | None:intergenic | 35.0% | |
| CATCTTATACAAAACACAGC+AGG | - | chr2_2:55420591-55420610 | None:intergenic | 35.0% | |
| ! | GTAAACCTTCACAGTTGATA+AGG | - | chr2_2:55420655-55420674 | None:intergenic | 35.0% |
| ! | CAAAATTAAGCTGATTGGTC+CGG | + | chr2_2:55420827-55420846 | Msa0258790:CDS | 35.0% |
| ! | TGAATAACACAGTCTGAAGT+TGG | - | chr2_2:55421065-55421084 | None:intergenic | 35.0% |
| ! | CTGGCAGAAATTTTCAATAG+AGG | - | chr2_2:55421106-55421125 | None:intergenic | 35.0% |
| TAAGCATAACAAACCGAGTT+TGG | - | chr2_2:55421177-55421196 | None:intergenic | 35.0% | |
| !! | CTCGGTTTGTTATGCTTATA+TGG | + | chr2_2:55421179-55421198 | Msa0258790:three_prime_UTR | 35.0% |
| CTTTCGTTCAATCGTTCGTT+TGG | + | chr2_2:55418971-55418990 | Msa0258790:intron | 40.0% | |
| ! | TGTTGGTGAAACGATGAAGA+AGG | - | chr2_2:55419043-55419062 | None:intergenic | 40.0% |
| !! | GAGTTTGGTCTTGTAACCTT+GGG | - | chr2_2:55419371-55419390 | None:intergenic | 40.0% |
| !! | AGAGTTTGGTCTTGTAACCT+TGG | - | chr2_2:55419372-55419391 | None:intergenic | 40.0% |
| !!! | CCTAACAATGTCGGTTTTAC+GGG | - | chr2_2:55419524-55419543 | None:intergenic | 40.0% |
| !!! | GCCTAACAATGTCGGTTTTA+CGG | - | chr2_2:55419525-55419544 | None:intergenic | 40.0% |
| TAAAACCGACATTGTTAGGC+TGG | + | chr2_2:55419525-55419544 | Msa0258790:intron | 40.0% | |
| AAAACCGACATTGTTAGGCT+GGG | + | chr2_2:55419526-55419545 | Msa0258790:intron | 40.0% | |
| ! | ACTCGACATTTTCCACTTTG+TGG | + | chr2_2:55419574-55419593 | Msa0258790:intron | 40.0% |
| ! | CTCGACATTTTCCACTTTGT+GGG | + | chr2_2:55419575-55419594 | Msa0258790:intron | 40.0% |
| TGCATGGAAAAGAACTTCAC+TGG | - | chr2_2:55419686-55419705 | None:intergenic | 40.0% | |
| GTGTGTAGATTGTAGACAGT+AGG | + | chr2_2:55420019-55420038 | Msa0258790:intron | 40.0% | |
| AACATGCTTGCACACAAGAA+GGG | - | chr2_2:55420092-55420111 | None:intergenic | 40.0% | |
| AAACATGCTTGCACACAAGA+AGG | - | chr2_2:55420093-55420112 | None:intergenic | 40.0% | |
| ! | AACTAAGAGGGATTCTGGAA+AGG | - | chr2_2:55420130-55420149 | None:intergenic | 40.0% |
| TGTCTAACTAAGAGGGATTC+TGG | - | chr2_2:55420135-55420154 | None:intergenic | 40.0% | |
| GATCCTACTGAGTCTTAACA+GGG | - | chr2_2:55420200-55420219 | None:intergenic | 40.0% | |
| TGATCCTACTGAGTCTTAAC+AGG | - | chr2_2:55420201-55420220 | None:intergenic | 40.0% | |
| CTCAGTAGGATCAAAAGAAC+TGG | + | chr2_2:55420208-55420227 | Msa0258790:intron | 40.0% | |
| AACAACAGTAGAAAGCAAGC+TGG | - | chr2_2:55420531-55420550 | None:intergenic | 40.0% | |
| !!! | CAGTTTTAAGCGTGCAATAG+CGG | - | chr2_2:55420677-55420696 | None:intergenic | 40.0% |
| !! | CGGCAGTAGTGAATTGATTT+TGG | - | chr2_2:55420704-55420723 | None:intergenic | 40.0% |
| TAGATGAAGCAGATGACTTC+AGG | - | chr2_2:55420785-55420804 | None:intergenic | 40.0% | |
| TGAAGTCATCTGCTTCATCT+AGG | + | chr2_2:55420784-55420803 | Msa0258790:CDS | 40.0% | |
| GAAGTCATCTGCTTCATCTA+GGG | + | chr2_2:55420785-55420804 | Msa0258790:CDS | 40.0% | |
| TGAATACGGAAGTTCAACTC+CGG | - | chr2_2:55420916-55420935 | None:intergenic | 40.0% | |
| TGAAGTTGGATAAGCTACAC+AGG | - | chr2_2:55421051-55421070 | None:intergenic | 40.0% | |
| AAACTCCAAATCTCCTCCAT+GGG | - | chr2_2:55421138-55421157 | None:intergenic | 40.0% | |
| AAAACTCCAAATCTCCTCCA+TGG | - | chr2_2:55421139-55421158 | None:intergenic | 40.0% | |
| TTAGACATTGCAGCCAAACT+CGG | + | chr2_2:55421161-55421180 | Msa0258790:three_prime_UTR | 40.0% | |
| ! | AGATAATGTGTGCTGTTGCT+TGG | + | chr2_2:55421275-55421294 | Msa0258790:three_prime_UTR | 40.0% |
| !!! | CTCCTTTTTGGTTTGGGCTT+GGG | - | chr2_2:55418937-55418956 | None:intergenic | 45.0% |
| CATCGTTGTACTGTGAAGAC+AGG | + | chr2_2:55419143-55419162 | Msa0258790:intron | 45.0% | |
| TGGGACGAACGTCAAATTAC+TGG | - | chr2_2:55419352-55419371 | None:intergenic | 45.0% | |
| GTAATTTGACGTTCGTCCCA+AGG | + | chr2_2:55419352-55419371 | Msa0258790:intron | 45.0% | |
| GTCTTAGCTCGGTAAGAGTT+TGG | - | chr2_2:55419386-55419405 | None:intergenic | 45.0% | |
| !! | TCGGTTTTACGGGTTGTGTT+AGG | - | chr2_2:55419514-55419533 | None:intergenic | 45.0% |
| CCCGTAAAACCGACATTGTT+AGG | + | chr2_2:55419521-55419540 | Msa0258790:intron | 45.0% | |
| TGTGGGTGTGTGTGAGTTTA+TGG | + | chr2_2:55419592-55419611 | Msa0258790:intron | 45.0% | |
| GACATCGAATTCGGACCTAA+TGG | + | chr2_2:55420151-55420170 | Msa0258790:intron | 45.0% | |
| ATCGAATTCGGACCTAATGG+AGG | + | chr2_2:55420154-55420173 | Msa0258790:intron | 45.0% | |
| AATTCGGACCTAATGGAGGT+TGG | + | chr2_2:55420158-55420177 | Msa0258790:intron | 45.0% | |
| CTCACAATCCAACCTCCATT+AGG | - | chr2_2:55420169-55420188 | None:intergenic | 45.0% | |
| CTCATGCAATCCACCACAAA+AGG | - | chr2_2:55420269-55420288 | None:intergenic | 45.0% | |
| GATAACTCGATTGCTACAGC+AGG | - | chr2_2:55420455-55420474 | None:intergenic | 45.0% | |
| ! | GTCAGCCTTATCAACTGTGA+AGG | + | chr2_2:55420647-55420666 | Msa0258790:CDS | 45.0% |
| ATTCTTCGCAGATCCTAGAG+TGG | - | chr2_2:55420745-55420764 | None:intergenic | 45.0% | |
| ! | TTCATCTAGGGTTACTGCAG+TGG | + | chr2_2:55420797-55420816 | Msa0258790:CDS | 45.0% |
| ! | ATTAAGCTGATTGGTCCGGA+TGG | + | chr2_2:55420831-55420850 | Msa0258790:CDS | 45.0% |
| TTAGATGCAGCAGAGAATGC+CGG | + | chr2_2:55420894-55420913 | Msa0258790:CDS | 45.0% | |
| !! | TTTGGTTTGGGCTTGGGCTT+GGG | - | chr2_2:55418931-55418950 | None:intergenic | 50.0% |
| !!! | TTTTGGTTTGGGCTTGGGCT+TGG | - | chr2_2:55418932-55418951 | None:intergenic | 50.0% |
| AGCCCAAGCCCAAACCAAAA+AGG | + | chr2_2:55418932-55418951 | Msa0258790:intron | 50.0% | |
| !!! | CCTCCTTTTTGGTTTGGGCT+TGG | - | chr2_2:55418938-55418957 | None:intergenic | 50.0% |
| CCAAGCCCAAACCAAAAAGG+AGG | + | chr2_2:55418935-55418954 | Msa0258790:intron | 50.0% | |
| !! | TTGTATTGTCGGAGAGCGCT+GGG | - | chr2_2:55419016-55419035 | None:intergenic | 50.0% |
| ! | TTTGTATTGTCGGAGAGCGC+TGG | - | chr2_2:55419017-55419036 | None:intergenic | 50.0% |
| GATGCCCAGCCTAACAATGT+CGG | - | chr2_2:55419533-55419552 | None:intergenic | 50.0% | |
| ACTCACACACACCCACAAAG+TGG | - | chr2_2:55419589-55419608 | None:intergenic | 50.0% | |
| GGGTGTGTGTGAGTTTATGG+TGG | + | chr2_2:55419595-55419614 | Msa0258790:intron | 50.0% | |
| CGACCCTGTTAAGACTCAGT+AGG | + | chr2_2:55420194-55420213 | Msa0258790:intron | 50.0% | |
| ACTCGATTGCTACAGCAGGT+AGG | - | chr2_2:55420451-55420470 | None:intergenic | 50.0% | |
| TCGCAGATCCTAGAGTGGAA+GGG | - | chr2_2:55420740-55420759 | None:intergenic | 50.0% | |
| TTCGCAGATCCTAGAGTGGA+AGG | - | chr2_2:55420741-55420760 | None:intergenic | 50.0% | |
| AGAAACAACCTTCCCAGCAC+AGG | - | chr2_2:55420961-55420980 | None:intergenic | 50.0% | |
| ! | TGTGCTGGGAAGGTTGTTTC+TGG | + | chr2_2:55420960-55420979 | Msa0258790:CDS | 50.0% |
| GGTTCTGTCGATCAGTCAGA+TGG | + | chr2_2:55420981-55421000 | Msa0258790:CDS | 50.0% | |
| GTTAGGCTGGGCATCTTTCG+TGG | + | chr2_2:55419538-55419557 | Msa0258790:intron | 55.0% | |
| TGGGCATCTTTCGTGGTGTC+AGG | + | chr2_2:55419545-55419564 | Msa0258790:intron | 55.0% | |
| ! | GGGCATCTTTCGTGGTGTCA+GGG | + | chr2_2:55419546-55419565 | Msa0258790:intron | 55.0% |
| !! | GGAAGGGCACTTGACTGTTG+CGG | - | chr2_2:55420724-55420743 | None:intergenic | 55.0% |
| GTCAAGTGCCCTTCCACTCT+AGG | + | chr2_2:55420729-55420748 | Msa0258790:CDS | 55.0% | |
| CTTCCGTATTCATGCCGTGC+TGG | + | chr2_2:55420924-55420943 | Msa0258790:CDS | 55.0% | |
| GCTCCAGCACGGCATGAATA+CGG | - | chr2_2:55420930-55420949 | None:intergenic | 55.0% | |
| AGGTAGAGCATGCTCCAGCA+CGG | - | chr2_2:55420941-55420960 | None:intergenic | 55.0% | |
| GAGCATGCTCTACCTGTGCT+GGG | + | chr2_2:55420946-55420965 | Msa0258790:CDS | 55.0% | |
| ATGCTCTACCTGTGCTGGGA+AGG | + | chr2_2:55420950-55420969 | Msa0258790:CDS | 55.0% | |
| CAAATCTCCTCCATGGGCAC+GGG | - | chr2_2:55421132-55421151 | None:intergenic | 55.0% | |
| CCAAATCTCCTCCATGGGCA+CGG | - | chr2_2:55421133-55421152 | None:intergenic | 55.0% | |
| GGAGCATGCTCTACCTGTGC+TGG | + | chr2_2:55420945-55420964 | Msa0258790:CDS | 60.0% | |
| CCGTGCCCATGGAGGAGATT+TGG | + | chr2_2:55421130-55421149 | Msa0258790:three_prime_UTR | 60.0% | |
| CTGCCAGAAACCCGTGCCCA+TGG | + | chr2_2:55421119-55421138 | Msa0258790:three_prime_UTR | 65.0% | |
| CCTCCATGGGCACGGGTTTC+TGG | - | chr2_2:55421125-55421144 | None:intergenic | 65.0% | |
| CCAGAAACCCGTGCCCATGG+AGG | + | chr2_2:55421122-55421141 | Msa0258790:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 55418883 | 55421337 | 55418883 | ID=Msa0258790;Name=Msa0258790 |
| chr2_2 | mRNA | 55418883 | 55421337 | 55418883 | ID=Msa0258790-mRNA-1;Parent=Msa0258790;Name=Msa0258790-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0.5|0.5|0|0.5|2|225|160 |
| chr2_2 | exon | 55418883 | 55418890 | 55418883 | ID=Msa0258790-mRNA-1:exon:16743;Parent=Msa0258790-mRNA-1 |
| chr2_2 | exon | 55420638 | 55421337 | 55420638 | ID=Msa0258790-mRNA-1:exon:16744;Parent=Msa0258790-mRNA-1 |
| chr2_2 | CDS | 55418883 | 55418890 | 55418883 | ID=Msa0258790-mRNA-1:cds;Parent=Msa0258790-mRNA-1 |
| chr2_2 | CDS | 55420638 | 55421112 | 55420638 | ID=Msa0258790-mRNA-1:cds;Parent=Msa0258790-mRNA-1 |
| chr2_2 | three_prime_UTR | 55421113 | 55421337 | 55421113 | ID=Msa0258790-mRNA-1:three_prime_utr;Parent=Msa0258790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
