Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298380 | XP_024630486.2 | 91.250 | 80 | 7 | 0 | 1 | 80 | 90 | 169 | 3.05e-41 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0298380 | A0A072TJZ5 | 90.244 | 82 | 8 | 0 | 1 | 82 | 138 | 219 | 2.34e-41 | 146 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0298380 | Msa0446310 | 0.946161 | 7.812514e-105 | -8.615850e-47 |
| Msa0298380 | Msa0804080 | 0.891303 | 4.494659e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 28 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTTAAGAAGGATAATTTA+TGG | 0.220795 | 2_3:+52358433 | Msa0298380:three_prime_UTR |
| TTTGGAGTAGGAGGAGATAA+TGG | 0.273021 | 2_3:-52355588 | None:intergenic |
| GCAAGAAATTGAAAGAGATT+TGG | 0.318762 | 2_3:-52355727 | None:intergenic |
| AGAAGAATTAATATTGTTGC+TGG | 0.356237 | 2_3:+52358265 | Msa0298380:exon |
| ACTTGTAAATAGGTTGTTCT+AGG | 0.367870 | 2_3:+52356911 | Msa0298380:intron |
| AACTGTAGTGGGTATATGTT+TGG | 0.383486 | 2_3:-52355606 | None:intergenic |
| AATGTCCGAACTTGTTCATA+AGG | 0.390229 | 2_3:+52357249 | Msa0298380:CDS |
| TTGAAATTGCAGGTCAAGTA+AGG | 0.398284 | 2_3:+52358194 | Msa0298380:intron |
| CAAAAGACTTTAGCGTTGCT+TGG | 0.419332 | 2_3:-52355677 | None:intergenic |
| ATTACCCTTATGAACAAGTT+CGG | 0.445515 | 2_3:-52357254 | None:intergenic |
| GGGTATATGTTTGGAGTAGG+AGG | 0.476386 | 2_3:-52355597 | None:intergenic |
| AGTAGAGACTCAACTCGAAA+AGG | 0.477567 | 2_3:+52356972 | Msa0298380:CDS |
| ATGTCCGAACTTGTTCATAA+GGG | 0.482857 | 2_3:+52357250 | Msa0298380:CDS |
| TTGGAGTAGGAGGAGATAAT+GGG | 0.486207 | 2_3:-52355587 | None:intergenic |
| AAAGATGGAGAAACAATTTG+AGG | 0.500344 | 2_3:+52357056 | Msa0298380:CDS |
| GAATTAATATTGTTGCTGGC+TGG | 0.506661 | 2_3:+52358269 | Msa0298380:exon |
| AAGGCAACTAGGAGAAAAGA+TGG | 0.513002 | 2_3:+52357041 | Msa0298380:CDS |
| AGAATTCGAATTTCTTCCCC+AGG | 0.515854 | 2_3:+52355786 | Msa0298380:five_prime_UTR |
| GAAGAGAGTCAAAGGCAACT+AGG | 0.523426 | 2_3:+52357030 | Msa0298380:CDS |
| AGTGGGTATATGTTTGGAGT+AGG | 0.532387 | 2_3:-52355600 | None:intergenic |
| CAAAATTTGAAGAGAGTCAA+AGG | 0.540392 | 2_3:+52357022 | Msa0298380:CDS |
| AAATATAACAAATAAAATTG+TGG | 0.579963 | 2_3:-52358294 | None:intergenic |
| AAACATGAGGGAAGAAATGA+CGG | 0.594283 | 2_3:+52356999 | Msa0298380:CDS |
| TTTACTCAAGAAACTGTAGT+GGG | 0.596225 | 2_3:-52355617 | None:intergenic |
| CAAGAATCTTTGCACAATGG+AGG | 0.608945 | 2_3:+52355642 | Msa0298380:five_prime_UTR |
| CGAAAAGGAGCGAAACATGA+GGG | 0.616399 | 2_3:+52356987 | Msa0298380:CDS |
| AAACAAGAATCTTTGCACAA+TGG | 0.628978 | 2_3:+52355639 | Msa0298380:five_prime_UTR |
| TCGAAAAGGAGCGAAACATG+AGG | 0.631954 | 2_3:+52356986 | Msa0298380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTATTTTGAATATTTTTAT+AGG | + | chr2_3:52357192-52357211 | Msa0298380:intron | 10.0% |
| !! | AAATATAACAAATAAAATTG+TGG | - | chr2_3:52358297-52358316 | None:intergenic | 10.0% |
| !!! | TTGTTATATTTGTTAATTTT+TGG | + | chr2_3:52358306-52358325 | Msa0298380:three_prime_UTR | 10.0% |
| !! | AAAAAACTAATAATCATAAA+TGG | - | chr2_3:52358367-52358386 | None:intergenic | 10.0% |
| !! | AAAAAACTAATAATCATAAA+TGG | - | chr2_3:52358367-52358386 | None:intergenic | 10.0% |
| !!! | AATTTGATTTCAAAACAATT+TGG | + | chr2_3:52356737-52356756 | Msa0298380:intron | 15.0% |
| !! | TAGTGCATAATATATAATAT+AGG | + | chr2_3:52356868-52356887 | Msa0298380:intron | 15.0% |
| !! | TGATTATTTATATACTTACT+TGG | - | chr2_3:52357119-52357138 | None:intergenic | 15.0% |
| !!! | TTTTAATCAGCAAATATTAT+TGG | - | chr2_3:52357780-52357799 | None:intergenic | 15.0% |
| !!! | ATTTTACCAAAATTGATCAA+AGG | - | chr2_3:52355863-52355882 | None:intergenic | 20.0% |
| !!! | CAATTTGATTTCAAACAATT+TGG | + | chr2_3:52356148-52356167 | Msa0298380:intron | 20.0% |
| !! | TCAAATGAAAACAAAAAATG+GGG | - | chr2_3:52356475-52356494 | None:intergenic | 20.0% |
| !! | GTCAAATGAAAACAAAAAAT+GGG | - | chr2_3:52356476-52356495 | None:intergenic | 20.0% |
| !! | AGTCAAATGAAAACAAAAAA+TGG | - | chr2_3:52356477-52356496 | None:intergenic | 20.0% |
| !! | AGAAAACTTAATTACTTCTT+TGG | + | chr2_3:52356612-52356631 | Msa0298380:intron | 20.0% |
| !!! | TGAATATTTTTATAGGGTAT+CGG | + | chr2_3:52357199-52357218 | Msa0298380:intron | 20.0% |
| !! | TCTCAACTTGAAATAAAATT+TGG | - | chr2_3:52357337-52357356 | None:intergenic | 20.0% |
| !!! | AATTTTATTTCAAGTTGAGA+TGG | + | chr2_3:52357337-52357356 | Msa0298380:intron | 20.0% |
| !! | CTGATTAAAAAAAATGCTAT+TGG | + | chr2_3:52357790-52357809 | Msa0298380:intron | 20.0% |
| !! | GTTTGAATATATGCTAAAAT+TGG | + | chr2_3:52358018-52358037 | Msa0298380:intron | 20.0% |
| !!! | TTTTCTATACAATTAATGGA+TGG | - | chr2_3:52358146-52358165 | None:intergenic | 20.0% |
| !!! | GACTTTTTCTATACAATTAA+TGG | - | chr2_3:52358150-52358169 | None:intergenic | 20.0% |
| !!! | AGTTTTTTTTTGTGTTAAGA+AGG | + | chr2_3:52358422-52358441 | Msa0298380:three_prime_UTR | 20.0% |
| !! | GTTTTTCCTTTGATCAATTT+TGG | + | chr2_3:52355854-52355873 | Msa0298380:intron | 25.0% |
| !!! | GAATATGATTTGGTGATTTT+GGG | + | chr2_3:52356028-52356047 | Msa0298380:intron | 25.0% |
| ! | TTAAAAATGAGATGAGAACT+GGG | - | chr2_3:52356104-52356123 | None:intergenic | 25.0% |
| !!! | TTCTCATCTCATTTTTAAGT+TGG | + | chr2_3:52356106-52356125 | Msa0298380:intron | 25.0% |
| !!! | TTTTTAAGTTGGTTTCTTCA+CGG | + | chr2_3:52356117-52356136 | Msa0298380:intron | 25.0% |
| !!! | TGACTTTTTTAAGATAGAGT+AGG | + | chr2_3:52356401-52356420 | Msa0298380:intron | 25.0% |
| ! | CAAATGAAAACAAAAAATGG+GGG | - | chr2_3:52356474-52356493 | None:intergenic | 25.0% |
| ! | GATGATTCTATGTAGTATAA+TGG | + | chr2_3:52356527-52356546 | Msa0298380:intron | 25.0% |
| ! | TCTTCATGAAAATGAAAGTT+TGG | + | chr2_3:52356762-52356781 | Msa0298380:intron | 25.0% |
| ! | ATATATTATGCACTACAACT+AGG | - | chr2_3:52356863-52356882 | None:intergenic | 25.0% |
| !!! | TATAGGTTGTTCTAGAATTA+AGG | + | chr2_3:52356885-52356904 | Msa0298380:intron | 25.0% |
| ! | ATTAAGGTACACTTGTAAAT+AGG | + | chr2_3:52356901-52356920 | Msa0298380:intron | 25.0% |
| ! | GAAACAATTTGAGGAAAAAA+TGG | + | chr2_3:52357065-52357084 | Msa0298380:CDS | 25.0% |
| ! | TAGTTATGTTCCTATTGTAT+TGG | + | chr2_3:52357587-52357606 | Msa0298380:intron | 25.0% |
| ! | TAAAAAAAATGCTATTGGTG+TGG | + | chr2_3:52357795-52357814 | Msa0298380:intron | 25.0% |
| ! | CCTAATAATAACGAAAACAA+CGG | - | chr2_3:52357922-52357941 | None:intergenic | 25.0% |
| !!! | CGTTGTTTTCGTTATTATTA+GGG | + | chr2_3:52357920-52357939 | Msa0298380:intron | 25.0% |
| !!! | AACATCTTGCTATTGTTTTT+TGG | + | chr2_3:52358055-52358074 | Msa0298380:intron | 25.0% |
| !!! | ACATCTTGCTATTGTTTTTT+GGG | + | chr2_3:52358056-52358075 | Msa0298380:intron | 25.0% |
| ! | AGAAGAATTAATATTGTTGC+TGG | + | chr2_3:52358265-52358284 | Msa0298380:exon | 25.0% |
| TTTACTCAAGAAACTGTAGT+GGG | - | chr2_3:52355620-52355639 | None:intergenic | 30.0% | |
| ! | TTTTACTCAAGAAACTGTAG+TGG | - | chr2_3:52355621-52355640 | None:intergenic | 30.0% |
| AAACAAGAATCTTTGCACAA+TGG | + | chr2_3:52355639-52355658 | Msa0298380:five_prime_UTR | 30.0% | |
| GCAAGAAATTGAAAGAGATT+TGG | - | chr2_3:52355730-52355749 | None:intergenic | 30.0% | |
| ! | GAATTTTGAATACTTACCTG+GGG | - | chr2_3:52355805-52355824 | None:intergenic | 30.0% |
| ! | CGAATTTTGAATACTTACCT+GGG | - | chr2_3:52355806-52355825 | None:intergenic | 30.0% |
| ! | TCGAATTTTGAATACTTACC+TGG | - | chr2_3:52355807-52355826 | None:intergenic | 30.0% |
| !!! | TTGCATGAATGTCTTGTTTT+TGG | + | chr2_3:52355889-52355908 | Msa0298380:intron | 30.0% |
| !!! | TGCATGAATGTCTTGTTTTT+GGG | + | chr2_3:52355890-52355909 | Msa0298380:intron | 30.0% |
| TGTCAATGATTTATTTCCGA+TGG | + | chr2_3:52355916-52355935 | Msa0298380:intron | 30.0% | |
| TTCTCTCTCAATCAAAATCT+AGG | + | chr2_3:52355941-52355960 | Msa0298380:intron | 30.0% | |
| TCTCTCTCAATCAAAATCTA+GGG | + | chr2_3:52355942-52355961 | Msa0298380:intron | 30.0% | |
| !!! | GGAATATGATTTGGTGATTT+TGG | + | chr2_3:52356027-52356046 | Msa0298380:intron | 30.0% |
| !!! | TGATTTTGGGTTACTAAGAA+TGG | + | chr2_3:52356041-52356060 | Msa0298380:intron | 30.0% |
| CTTAAAAATGAGATGAGAAC+TGG | - | chr2_3:52356105-52356124 | None:intergenic | 30.0% | |
| TCTTCATGAAATTGAGACTT+TGG | + | chr2_3:52356173-52356192 | Msa0298380:intron | 30.0% | |
| TGTATTTGTATGCAGGTAAT+TGG | - | chr2_3:52356258-52356277 | None:intergenic | 30.0% | |
| CTAACTATGTATTTGTATGC+AGG | - | chr2_3:52356265-52356284 | None:intergenic | 30.0% | |
| !!! | TGATTTTGGGTTACTAAGAA+TGG | + | chr2_3:52356041-52356060 | Msa0298380:intron | 30.0% |
| TCATGAAAATGAAAGTTTGG+TGG | + | chr2_3:52356765-52356784 | Msa0298380:intron | 30.0% | |
| TAGAGAAGAACAAAGGAAAT+GGG | - | chr2_3:52356839-52356858 | None:intergenic | 30.0% | |
| ACTTGTAAATAGGTTGTTCT+AGG | + | chr2_3:52356911-52356930 | Msa0298380:intron | 30.0% | |
| CAAAATTTGAAGAGAGTCAA+AGG | + | chr2_3:52357022-52357041 | Msa0298380:CDS | 30.0% | |
| AAAGATGGAGAAACAATTTG+AGG | + | chr2_3:52357056-52357075 | Msa0298380:CDS | 30.0% | |
| !!! | ATATTTTTATAGGGTATCGG+TGG | + | chr2_3:52357202-52357221 | Msa0298380:intron | 30.0% |
| ATTACCCTTATGAACAAGTT+CGG | - | chr2_3:52357257-52357276 | None:intergenic | 30.0% | |
| !! | TATTTCAAGTTGAGATGGAT+TGG | + | chr2_3:52357342-52357361 | Msa0298380:intron | 30.0% |
| !! | TGAGAATTCGTTTTTGCAAT+TGG | + | chr2_3:52357404-52357423 | Msa0298380:intron | 30.0% |
| GGTTAATAATCCAAACTTAC+TGG | + | chr2_3:52357425-52357444 | Msa0298380:intron | 30.0% | |
| !! | CCGTTGTTTTCGTTATTATT+AGG | + | chr2_3:52357919-52357938 | Msa0298380:intron | 30.0% |
| CCAAACTTAAACTCATACAA+TGG | - | chr2_3:52357980-52357999 | None:intergenic | 30.0% | |
| ! | CCATTGTATGAGTTTAAGTT+TGG | + | chr2_3:52357977-52357996 | Msa0298380:intron | 30.0% |
| ! | TTCGATTTTGTTGAAATTGC+AGG | + | chr2_3:52358184-52358203 | Msa0298380:intron | 30.0% |
| !! | AACTGTAGTGGGTATATGTT+TGG | - | chr2_3:52355609-52355628 | None:intergenic | 35.0% |
| TGACTGTGAATGTTGCTAAA+AGG | + | chr2_3:52355976-52355995 | Msa0298380:intron | 35.0% | |
| GACTGTGAATGTTGCTAAAA+GGG | + | chr2_3:52355977-52355996 | Msa0298380:intron | 35.0% | |
| ACTGTGAATGTTGCTAAAAG+GGG | + | chr2_3:52355978-52355997 | Msa0298380:intron | 35.0% | |
| TTGCTAAAAGGGGAAGAATT+AGG | + | chr2_3:52355988-52356007 | Msa0298380:intron | 35.0% | |
| GGAAGAATTAGGAACATGAA+TGG | + | chr2_3:52355999-52356018 | Msa0298380:intron | 35.0% | |
| ATTAGGAACATGAATGGATG+TGG | + | chr2_3:52356005-52356024 | Msa0298380:intron | 35.0% | |
| TTAGGAACATGAATGGATGT+GGG | + | chr2_3:52356006-52356025 | Msa0298380:intron | 35.0% | |
| ATGGATGTGGGAATATGATT+TGG | + | chr2_3:52356018-52356037 | Msa0298380:intron | 35.0% | |
| TCATGAAATTGAGACTTTGG+TGG | + | chr2_3:52356176-52356195 | Msa0298380:intron | 35.0% | |
| ACAAAAAATGGGGGCTATAT+CGG | - | chr2_3:52356465-52356484 | None:intergenic | 35.0% | |
| ! | TTCTTTGGTCCATGTGATTT+TGG | + | chr2_3:52356627-52356646 | Msa0298380:intron | 35.0% |
| ! | TCTTTGGTCCATGTGATTTT+GGG | + | chr2_3:52356628-52356647 | Msa0298380:intron | 35.0% |
| CTTAGTAACCCAAAATCACA+TGG | - | chr2_3:52356639-52356658 | None:intergenic | 35.0% | |
| AACAACACACATTTCAAGAG+AGG | + | chr2_3:52356671-52356690 | Msa0298380:intron | 35.0% | |
| CTAGAGAAGAACAAAGGAAA+TGG | - | chr2_3:52356840-52356859 | None:intergenic | 35.0% | |
| AAACATGAGGGAAGAAATGA+CGG | + | chr2_3:52356999-52357018 | Msa0298380:CDS | 35.0% | |
| ! | AATGTCCGAACTTGTTCATA+AGG | + | chr2_3:52357249-52357268 | Msa0298380:CDS | 35.0% |
| ! | ATGTCCGAACTTGTTCATAA+GGG | + | chr2_3:52357250-52357269 | Msa0298380:CDS | 35.0% |
| AGTTTGGTTATAGCAAGCTT+AGG | + | chr2_3:52357563-52357582 | Msa0298380:intron | 35.0% | |
| CAGACAACAACCAATACAAT+AGG | - | chr2_3:52357600-52357619 | None:intergenic | 35.0% | |
| !!! | GTATTGGTTGTTGTCTGTTT+TGG | + | chr2_3:52357603-52357622 | Msa0298380:intron | 35.0% |
| CAAATATTATTGGCAGAGGA+AGG | - | chr2_3:52357770-52357789 | None:intergenic | 35.0% | |
| TCAGCAAATATTATTGGCAG+AGG | - | chr2_3:52357774-52357793 | None:intergenic | 35.0% | |
| !!! | GTGCTGCTGTTTTTTGTTTT+CGG | + | chr2_3:52357843-52357862 | Msa0298380:intron | 35.0% |
| !!! | TGGATTTTTGCTGTTGGTTT+TGG | + | chr2_3:52357896-52357915 | Msa0298380:intron | 35.0% |
| AATCTTTGTCTCGTTGAGTT+TGG | + | chr2_3:52357954-52357973 | Msa0298380:intron | 35.0% | |
| ! | GACAGACACATTTGAAACAT+AGG | + | chr2_3:52358091-52358110 | Msa0298380:intron | 35.0% |
| TTGAAATTGCAGGTCAAGTA+AGG | + | chr2_3:52358194-52358213 | Msa0298380:intron | 35.0% | |
| GAATTAATATTGTTGCTGGC+TGG | + | chr2_3:52358269-52358288 | Msa0298380:exon | 35.0% | |
| TTGGAGTAGGAGGAGATAAT+GGG | - | chr2_3:52355590-52355609 | None:intergenic | 40.0% | |
| ! | TTTGGAGTAGGAGGAGATAA+TGG | - | chr2_3:52355591-52355610 | None:intergenic | 40.0% |
| ! | AGTGGGTATATGTTTGGAGT+AGG | - | chr2_3:52355603-52355622 | None:intergenic | 40.0% |
| CAAGAATCTTTGCACAATGG+AGG | + | chr2_3:52355642-52355661 | Msa0298380:five_prime_UTR | 40.0% | |
| CAAAAGACTTTAGCGTTGCT+TGG | - | chr2_3:52355680-52355699 | None:intergenic | 40.0% | |
| AGAATTCGAATTTCTTCCCC+AGG | + | chr2_3:52355786-52355805 | Msa0298380:five_prime_UTR | 40.0% | |
| TGATTGAGAGAGAAAGCCAT+CGG | - | chr2_3:52355935-52355954 | None:intergenic | 40.0% | |
| ACACAGACACATTTCAAGAG+AGG | + | chr2_3:52356076-52356095 | Msa0298380:intron | 40.0% | |
| TGTATGCAGGTAATTGGAGT+TGG | - | chr2_3:52356252-52356271 | None:intergenic | 40.0% | |
| ACTAGGCTAGAGAAGAACAA+AGG | - | chr2_3:52356846-52356865 | None:intergenic | 40.0% | |
| AGTAGAGACTCAACTCGAAA+AGG | + | chr2_3:52356972-52356991 | Msa0298380:CDS | 40.0% | |
| AAGGCAACTAGGAGAAAAGA+TGG | + | chr2_3:52357041-52357060 | Msa0298380:CDS | 40.0% | |
| ATTGTAAGTCACATGAGCTC+TGG | + | chr2_3:52357162-52357181 | Msa0298380:intron | 40.0% | |
| !! | TTCAAGTTGAGATGGATTGG+TGG | + | chr2_3:52357345-52357364 | Msa0298380:intron | 40.0% |
| ACAGGAAACACCAGTAAGTT+TGG | - | chr2_3:52357438-52357457 | None:intergenic | 40.0% | |
| ! | TACTGGTGTTTCCTGTTTTC+TGG | + | chr2_3:52357442-52357461 | Msa0298380:intron | 40.0% |
| !! | TTTCCTGTTTTCTGGTGTGA+GGG | + | chr2_3:52357450-52357469 | Msa0298380:intron | 40.0% |
| AACTAGCCCAAAAACCTCTA+TGG | - | chr2_3:52357543-52357562 | None:intergenic | 40.0% | |
| !!! | GGTTTTTGGGCTAGTTAGTT+TGG | + | chr2_3:52357547-52357566 | Msa0298380:intron | 40.0% |
| TAGGCACATTTCCCTTGTAT+AGG | + | chr2_3:52357644-52357663 | Msa0298380:intron | 40.0% | |
| CACATTTCCCTTGTATAGGT+GGG | + | chr2_3:52357648-52357667 | Msa0298380:intron | 40.0% | |
| ! | TCAGCGCCTTTGTATGTTTT+CGG | + | chr2_3:52357720-52357739 | Msa0298380:intron | 40.0% |
| TCGCAACCGAAAACATACAA+AGG | - | chr2_3:52357729-52357748 | None:intergenic | 40.0% | |
| ACAAAAAACAGCAGCACCAA+GGG | - | chr2_3:52357840-52357859 | None:intergenic | 40.0% | |
| AACAAAAAACAGCAGCACCA+AGG | - | chr2_3:52357841-52357860 | None:intergenic | 40.0% | |
| !! | TTGGTGTGGATTTTTGCTGT+TGG | + | chr2_3:52357890-52357909 | Msa0298380:intron | 40.0% |
| ACTCAACGAGACAAAGATTG+TGG | - | chr2_3:52357953-52357972 | None:intergenic | 40.0% | |
| ! | TTGGATTTGCTTAAGAGACG+CGG | + | chr2_3:52357996-52358015 | Msa0298380:intron | 40.0% |
| ! | GGGTATATGTTTGGAGTAGG+AGG | - | chr2_3:52355600-52355619 | None:intergenic | 45.0% |
| TCGAAAAGGAGCGAAACATG+AGG | + | chr2_3:52356986-52357005 | Msa0298380:CDS | 45.0% | |
| CGAAAAGGAGCGAAACATGA+GGG | + | chr2_3:52356987-52357006 | Msa0298380:CDS | 45.0% | |
| GAAGAGAGTCAAAGGCAACT+AGG | + | chr2_3:52357030-52357049 | Msa0298380:CDS | 45.0% | |
| ! | TAAGTCACATGAGCTCTGGT+TGG | + | chr2_3:52357166-52357185 | Msa0298380:intron | 45.0% |
| ! | AAGTCACATGAGCTCTGGTT+GGG | + | chr2_3:52357167-52357186 | Msa0298380:intron | 45.0% |
| CACGGCTTAATGCATTTGTG+AGG | + | chr2_3:52357371-52357390 | Msa0298380:intron | 45.0% | |
| !! | GTTTCCTGTTTTCTGGTGTG+AGG | + | chr2_3:52357449-52357468 | Msa0298380:intron | 45.0% |
| !! | TGTTTTCTGGTGTGAGGGTT+CGG | + | chr2_3:52357455-52357474 | Msa0298380:intron | 45.0% |
| TCTATGGCTGGTGTGCTTTA+AGG | - | chr2_3:52357527-52357546 | None:intergenic | 45.0% | |
| TTAAAGCACACCAGCCATAG+AGG | + | chr2_3:52357526-52357545 | Msa0298380:intron | 45.0% | |
| ! | ACACCAGCCATAGAGGTTTT+TGG | + | chr2_3:52357533-52357552 | Msa0298380:intron | 45.0% |
| ! | CACCAGCCATAGAGGTTTTT+GGG | + | chr2_3:52357534-52357553 | Msa0298380:intron | 45.0% |
| !!! | TGGTTGTTGTCTGTTTTGGC+AGG | + | chr2_3:52357607-52357626 | Msa0298380:intron | 45.0% |
| !!! | GGTTGTTGTCTGTTTTGGCA+GGG | + | chr2_3:52357608-52357627 | Msa0298380:intron | 45.0% |
| GCACATTTCCCTTGTATAGG+TGG | + | chr2_3:52357647-52357666 | Msa0298380:intron | 45.0% | |
| ! | TTCCCTTGTATAGGTGGGTT+TGG | + | chr2_3:52357653-52357672 | Msa0298380:intron | 45.0% |
| TGCCAAACCCACCTATACAA+GGG | - | chr2_3:52357658-52357677 | None:intergenic | 45.0% | |
| ATGCCAAACCCACCTATACA+AGG | - | chr2_3:52357659-52357678 | None:intergenic | 45.0% | |
| AAACAAGGCGAAACACCTAG+AGG | - | chr2_3:52357701-52357720 | None:intergenic | 45.0% | |
| !! | CATACAAAGGCGCTGAAACA+AGG | - | chr2_3:52357716-52357735 | None:intergenic | 45.0% |
| ! | ATGTTTTCGGTTGCGAGTGT+TGG | + | chr2_3:52357733-52357752 | Msa0298380:intron | 45.0% |
| ! | TTTTCGGTTGTGTGACAGCT+TGG | + | chr2_3:52357859-52357878 | Msa0298380:intron | 45.0% |
| TTTCGGTTGTGTGACAGCTT+GGG | + | chr2_3:52357860-52357879 | Msa0298380:intron | 45.0% | |
| !!! | TTATTTTGAATATTTTTATA+GGG | + | chr2_3:52357193-52357212 | Msa0298380:intron | 5.0% |
| ! | AGTCACATGAGCTCTGGTTG+GGG | + | chr2_3:52357168-52357187 | Msa0298380:intron | 50.0% |
| !! | GAGATGGATTGGTGGAGACA+CGG | + | chr2_3:52357353-52357372 | Msa0298380:intron | 50.0% |
| GAACCCTCACACCAGAAAAC+AGG | - | chr2_3:52357456-52357475 | None:intergenic | 50.0% | |
| AGCCCAAAAACCTCTATGGC+TGG | - | chr2_3:52357539-52357558 | None:intergenic | 50.0% | |
| !! | GTTTTGGCAGGGTAGTGATG+TGG | + | chr2_3:52357619-52357638 | Msa0298380:intron | 50.0% |
| GTGGGTTTGGCATGACCTTT+GGG | + | chr2_3:52357666-52357685 | Msa0298380:intron | 50.0% | |
| GTTTGGCATGACCTTTGGGT+TGG | + | chr2_3:52357670-52357689 | Msa0298380:intron | 50.0% | |
| !! | GCATGACCTTTGGGTTGGTT+TGG | + | chr2_3:52357675-52357694 | Msa0298380:intron | 50.0% |
| TAGAGGCCAAACCAACCCAA+AGG | - | chr2_3:52357684-52357703 | None:intergenic | 50.0% | |
| !! | TTTGGGTTGGTTTGGCCTCT+AGG | + | chr2_3:52357683-52357702 | Msa0298380:intron | 50.0% |
| TTCGGTTGTGTGACAGCTTG+GGG | + | chr2_3:52357861-52357880 | Msa0298380:intron | 50.0% | |
| ! | TGACAGCTTGGGGAAGCTTT+TGG | + | chr2_3:52357871-52357890 | Msa0298380:intron | 50.0% |
| ! | TTCGGCTGCTGTTTGTGCAG+TGG | + | chr2_3:52357473-52357492 | Msa0298380:intron | 55.0% |
| GCAGGGTAGTGATGTGGTGT+AGG | + | chr2_3:52357625-52357644 | Msa0298380:intron | 55.0% | |
| ! | GGTGGGTTTGGCATGACCTT+TGG | + | chr2_3:52357665-52357684 | Msa0298380:intron | 55.0% |
| TGTTAGCTGTTGCACGCCCT+TGG | + | chr2_3:52357821-52357840 | Msa0298380:intron | 55.0% | |
| ! | GCTTGGGGAAGCTTTTGGTG+TGG | + | chr2_3:52357876-52357895 | Msa0298380:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 52355581 | 52358454 | 52355581 | ID=Msa0298380;Name=Msa0298380 |
| chr2_3 | mRNA | 52355581 | 52358454 | 52355581 | ID=Msa0298380-mRNA-1;Parent=Msa0298380;Name=Msa0298380-mRNA-1;_AED=0.06;_eAED=0.06;_QI=262|0.33|0.75|0.75|0.66|0.75|4|179|105 |
| chr2_3 | exon | 52355581 | 52355807 | 52355581 | ID=Msa0298380-mRNA-1:exon:16705;Parent=Msa0298380-mRNA-1 |
| chr2_3 | exon | 52356923 | 52357119 | 52356923 | ID=Msa0298380-mRNA-1:exon:16706;Parent=Msa0298380-mRNA-1 |
| chr2_3 | exon | 52357214 | 52357299 | 52357214 | ID=Msa0298380-mRNA-1:exon:16707;Parent=Msa0298380-mRNA-1 |
| chr2_3 | exon | 52358206 | 52358454 | 52358206 | ID=Msa0298380-mRNA-1:exon:16708;Parent=Msa0298380-mRNA-1 |
| chr2_3 | five_prime_UTR | 52355581 | 52355807 | 52355581 | ID=Msa0298380-mRNA-1:five_prime_utr;Parent=Msa0298380-mRNA-1 |
| chr2_3 | five_prime_UTR | 52356923 | 52356957 | 52356923 | ID=Msa0298380-mRNA-1:five_prime_utr;Parent=Msa0298380-mRNA-1 |
| chr2_3 | CDS | 52356958 | 52357119 | 52356958 | ID=Msa0298380-mRNA-1:cds;Parent=Msa0298380-mRNA-1 |
| chr2_3 | CDS | 52357214 | 52357299 | 52357214 | ID=Msa0298380-mRNA-1:cds;Parent=Msa0298380-mRNA-1 |
| chr2_3 | CDS | 52358206 | 52358275 | 52358206 | ID=Msa0298380-mRNA-1:cds;Parent=Msa0298380-mRNA-1 |
| chr2_3 | three_prime_UTR | 52358276 | 52358454 | 52358276 | ID=Msa0298380-mRNA-1:three_prime_utr;Parent=Msa0298380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
