Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0446310 | XP_024630486.2 | 91.250 | 80 | 7 | 0 | 1 | 80 | 90 | 169 | 3.05e-41 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0446310 | A0A072TJZ5 | 90.244 | 82 | 8 | 0 | 1 | 82 | 138 | 219 | 2.34e-41 | 146 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0110970 | Msa0446310 | 0.801127 | 1.042551e-48 | -8.615850e-47 |
| Msa0124340 | Msa0446310 | 0.826725 | 2.317537e-54 | -8.615850e-47 |
| Msa0446310 | Msa0804080 | 0.897765 | 1.023112e-76 | -8.615850e-47 |
| Msa0298380 | Msa0446310 | 0.946161 | 7.812514e-105 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 27 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGAGTAGGAGGAGATAA+TGG | 0.273021 | 3_3:+21695215 | None:intergenic |
| GCAAGAAATTGAAAGAGATT+TGG | 0.318762 | 3_3:+21695076 | None:intergenic |
| AGAAGAATTAATATTGTTGC+TGG | 0.356237 | 3_3:-21692538 | Msa0446310:exon |
| ACTTGTAAATAGGTTGTTCT+AGG | 0.367870 | 3_3:-21693892 | Msa0446310:intron |
| AACTGTAGTGGGTATATGTT+TGG | 0.383486 | 3_3:+21695197 | None:intergenic |
| AATGTCCGAACTTGTTCATA+AGG | 0.390229 | 3_3:-21693554 | Msa0446310:CDS |
| TTGAAATTGCAGGTCAAGTA+AGG | 0.398284 | 3_3:-21692609 | Msa0446310:intron |
| CAAAAGACTTTAGCGTTGCT+TGG | 0.419332 | 3_3:+21695126 | None:intergenic |
| ATTACCCTTATGAACAAGTT+CGG | 0.445515 | 3_3:+21693549 | None:intergenic |
| GGGTATATGTTTGGAGTAGG+AGG | 0.476386 | 3_3:+21695206 | None:intergenic |
| AGTAGAGACTCAACTCGAAA+AGG | 0.477567 | 3_3:-21693831 | Msa0446310:CDS |
| ATGTCCGAACTTGTTCATAA+GGG | 0.482857 | 3_3:-21693553 | Msa0446310:CDS |
| TTGGAGTAGGAGGAGATAAT+GGG | 0.486207 | 3_3:+21695216 | None:intergenic |
| AAAGATGGAGAAACAATTTG+AGG | 0.500344 | 3_3:-21693747 | Msa0446310:CDS |
| GAATTAATATTGTTGCTGGC+TGG | 0.506661 | 3_3:-21692534 | Msa0446310:exon |
| AAGGCAACTAGGAGAAAAGA+TGG | 0.513002 | 3_3:-21693762 | Msa0446310:CDS |
| AGAATTCGAATTTCTTCCCC+AGG | 0.515854 | 3_3:-21695017 | Msa0446310:intron |
| GAAGAGAGTCAAAGGCAACT+AGG | 0.523426 | 3_3:-21693773 | Msa0446310:CDS |
| AGTGGGTATATGTTTGGAGT+AGG | 0.532387 | 3_3:+21695203 | None:intergenic |
| CAAAATTTGAAGAGAGTCAA+AGG | 0.540392 | 3_3:-21693781 | Msa0446310:CDS |
| ATATATAACAAATAAAATTG+TGG | 0.590747 | 3_3:+21692509 | None:intergenic |
| AAACATGAGGGAAGAAATGA+CGG | 0.594283 | 3_3:-21693804 | Msa0446310:CDS |
| TTTACTCAAGAAACTGTAGT+GGG | 0.596225 | 3_3:+21695186 | None:intergenic |
| CAAGAATCTTTGCACAATGG+AGG | 0.608945 | 3_3:-21695161 | Msa0446310:five_prime_UTR |
| CGAAAAGGAGCGAAACATGA+GGG | 0.616399 | 3_3:-21693816 | Msa0446310:CDS |
| AAACAAGAATCTTTGCACAA+TGG | 0.628978 | 3_3:-21695164 | Msa0446310:five_prime_UTR |
| TCGAAAAGGAGCGAAACATG+AGG | 0.631954 | 3_3:-21693817 | Msa0446310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTATTTTGAATATTTTTAT+AGG | - | chr3_3:21694123-21694142 | Msa0446310:intron | 10.0% |
| !!! | AATTTGATTTCAAAACAATT+TGG | - | chr3_3:21693668-21693687 | Msa0446310:intron | 15.0% |
| !! | TAGTGCATAATATATAATAT+AGG | - | chr3_3:21693799-21693818 | Msa0446310:CDS | 15.0% |
| !! | TGATTATTTATATACTTACT+TGG | + | chr3_3:21694050-21694069 | None:intergenic | 15.0% |
| !!! | TTTTAATCAGCAAATATTAT+TGG | + | chr3_3:21694711-21694730 | None:intergenic | 15.0% |
| !!! | ATTTTACCAAAATTGATCAA+AGG | + | chr3_3:21692794-21692813 | None:intergenic | 20.0% |
| !!! | CAATTTGATTTCAAACAATT+TGG | - | chr3_3:21693079-21693098 | Msa0446310:intron | 20.0% |
| !! | TCAAATGAAAACAAAAAATG+GGG | + | chr3_3:21693406-21693425 | None:intergenic | 20.0% |
| !! | GTCAAATGAAAACAAAAAAT+GGG | + | chr3_3:21693407-21693426 | None:intergenic | 20.0% |
| !! | AGTCAAATGAAAACAAAAAA+TGG | + | chr3_3:21693408-21693427 | None:intergenic | 20.0% |
| !! | AGAAAACTTAATTACTTCTT+TGG | - | chr3_3:21693543-21693562 | Msa0446310:CDS | 20.0% |
| !!! | TGAATATTTTTATAGGGTAT+CGG | - | chr3_3:21694130-21694149 | Msa0446310:intron | 20.0% |
| !! | TCTCAACTTGAAATAAAATT+TGG | + | chr3_3:21694268-21694287 | None:intergenic | 20.0% |
| !!! | AATTTTATTTCAAGTTGAGA+TGG | - | chr3_3:21694268-21694287 | Msa0446310:intron | 20.0% |
| !! | CTGATTAAAAAAAATGCTAT+TGG | - | chr3_3:21694721-21694740 | Msa0446310:intron | 20.0% |
| !! | GTTTGAATATATGCTAAAAT+TGG | - | chr3_3:21694949-21694968 | Msa0446310:intron | 20.0% |
| !!! | TTTTCTATACAATTAATGGA+TGG | + | chr3_3:21695077-21695096 | None:intergenic | 20.0% |
| !!! | GACTTTTTCTATACAATTAA+TGG | + | chr3_3:21695081-21695100 | None:intergenic | 20.0% |
| !! | GTTTTTCCTTTGATCAATTT+TGG | - | chr3_3:21692785-21692804 | Msa0446310:intron | 25.0% |
| !!! | GAATATGATTTGGTGATTTT+GGG | - | chr3_3:21692959-21692978 | Msa0446310:intron | 25.0% |
| ! | TTAAAAATGAGATGAGAACT+GGG | + | chr3_3:21693035-21693054 | None:intergenic | 25.0% |
| !!! | TTCTCATCTCATTTTTAAGT+TGG | - | chr3_3:21693037-21693056 | Msa0446310:intron | 25.0% |
| !!! | TTTTTAAGTTGGTTTCTTCA+CGG | - | chr3_3:21693048-21693067 | Msa0446310:intron | 25.0% |
| !!! | TGACTTTTTTAAGATAGAGT+AGG | - | chr3_3:21693332-21693351 | Msa0446310:intron | 25.0% |
| ! | CAAATGAAAACAAAAAATGG+GGG | + | chr3_3:21693405-21693424 | None:intergenic | 25.0% |
| ! | GATGATTCTATGTAGTATAA+TGG | - | chr3_3:21693458-21693477 | Msa0446310:intron | 25.0% |
| ! | TCTTCATGAAAATGAAAGTT+TGG | - | chr3_3:21693693-21693712 | Msa0446310:intron | 25.0% |
| ! | ATATATTATGCACTACAACT+AGG | + | chr3_3:21693794-21693813 | None:intergenic | 25.0% |
| !!! | TATAGGTTGTTCTAGAATTA+AGG | - | chr3_3:21693816-21693835 | Msa0446310:CDS | 25.0% |
| ! | ATTAAGGTACACTTGTAAAT+AGG | - | chr3_3:21693832-21693851 | Msa0446310:CDS | 25.0% |
| ! | GAAACAATTTGAGGAAAAAA+TGG | - | chr3_3:21693996-21694015 | Msa0446310:intron | 25.0% |
| ! | TAGTTATGTTCCTATTGTAT+TGG | - | chr3_3:21694518-21694537 | Msa0446310:intron | 25.0% |
| ! | TAAAAAAAATGCTATTGGTG+TGG | - | chr3_3:21694726-21694745 | Msa0446310:intron | 25.0% |
| ! | CCTAATAATAACGAAAACAA+CGG | + | chr3_3:21694853-21694872 | None:intergenic | 25.0% |
| !!! | CGTTGTTTTCGTTATTATTA+GGG | - | chr3_3:21694851-21694870 | Msa0446310:intron | 25.0% |
| !!! | AACATCTTGCTATTGTTTTT+TGG | - | chr3_3:21694986-21695005 | Msa0446310:intron | 25.0% |
| !!! | ACATCTTGCTATTGTTTTTT+GGG | - | chr3_3:21694987-21695006 | Msa0446310:intron | 25.0% |
| ! | AGAAGAATTAATATTGTTGC+TGG | - | chr3_3:21695196-21695215 | Msa0446310:five_prime_UTR | 25.0% |
| TTTACTCAAGAAACTGTAGT+GGG | + | chr3_3:21692551-21692570 | None:intergenic | 30.0% | |
| ! | TTTTACTCAAGAAACTGTAG+TGG | + | chr3_3:21692552-21692571 | None:intergenic | 30.0% |
| AAACAAGAATCTTTGCACAA+TGG | - | chr3_3:21692570-21692589 | Msa0446310:CDS | 30.0% | |
| GCAAGAAATTGAAAGAGATT+TGG | + | chr3_3:21692661-21692680 | None:intergenic | 30.0% | |
| ! | GAATTTTGAATACTTACCTG+GGG | + | chr3_3:21692736-21692755 | None:intergenic | 30.0% |
| ! | CGAATTTTGAATACTTACCT+GGG | + | chr3_3:21692737-21692756 | None:intergenic | 30.0% |
| ! | TCGAATTTTGAATACTTACC+TGG | + | chr3_3:21692738-21692757 | None:intergenic | 30.0% |
| AAACGTAGCATATAAACGAA+CGG | + | chr3_3:21692769-21692788 | None:intergenic | 30.0% | |
| !!! | TTGCATGAATGTCTTGTTTT+TGG | - | chr3_3:21692820-21692839 | Msa0446310:intron | 30.0% |
| !!! | TGCATGAATGTCTTGTTTTT+GGG | - | chr3_3:21692821-21692840 | Msa0446310:intron | 30.0% |
| TGTCAATGATTTATTTCCGA+TGG | - | chr3_3:21692847-21692866 | Msa0446310:intron | 30.0% | |
| TTCTCTCTCAATCAAAATCT+AGG | - | chr3_3:21692872-21692891 | Msa0446310:intron | 30.0% | |
| TCTCTCTCAATCAAAATCTA+GGG | - | chr3_3:21692873-21692892 | Msa0446310:intron | 30.0% | |
| !!! | GGAATATGATTTGGTGATTT+TGG | - | chr3_3:21692958-21692977 | Msa0446310:intron | 30.0% |
| !!! | TGATTTTGGGTTACTAAGAA+TGG | - | chr3_3:21692972-21692991 | Msa0446310:intron | 30.0% |
| CTTAAAAATGAGATGAGAAC+TGG | + | chr3_3:21693036-21693055 | None:intergenic | 30.0% | |
| TCTTCATGAAATTGAGACTT+TGG | - | chr3_3:21693104-21693123 | Msa0446310:intron | 30.0% | |
| TGTATTTGTATGCAGGTAAT+TGG | + | chr3_3:21693189-21693208 | None:intergenic | 30.0% | |
| CTAACTATGTATTTGTATGC+AGG | + | chr3_3:21693196-21693215 | None:intergenic | 30.0% | |
| !!! | TGATTTTGGGTTACTAAGAA+TGG | - | chr3_3:21692972-21692991 | Msa0446310:intron | 30.0% |
| TCATGAAAATGAAAGTTTGG+TGG | - | chr3_3:21693696-21693715 | Msa0446310:intron | 30.0% | |
| TAGAGAAGAACAAAGGAAAT+GGG | + | chr3_3:21693770-21693789 | None:intergenic | 30.0% | |
| ACTTGTAAATAGGTTGTTCT+AGG | - | chr3_3:21693842-21693861 | Msa0446310:CDS | 30.0% | |
| CAAAATTTGAAGAGAGTCAA+AGG | - | chr3_3:21693953-21693972 | Msa0446310:intron | 30.0% | |
| AAAGATGGAGAAACAATTTG+AGG | - | chr3_3:21693987-21694006 | Msa0446310:intron | 30.0% | |
| !!! | ATATTTTTATAGGGTATCGG+TGG | - | chr3_3:21694133-21694152 | Msa0446310:intron | 30.0% |
| ATTACCCTTATGAACAAGTT+CGG | + | chr3_3:21694188-21694207 | None:intergenic | 30.0% | |
| !! | TATTTCAAGTTGAGATGGAT+TGG | - | chr3_3:21694273-21694292 | Msa0446310:intron | 30.0% |
| !! | TGAGAATTCGTTTTTGCAAT+TGG | - | chr3_3:21694335-21694354 | Msa0446310:intron | 30.0% |
| GGTTAATAATCCAAACTTAC+TGG | - | chr3_3:21694356-21694375 | Msa0446310:intron | 30.0% | |
| !! | CCGTTGTTTTCGTTATTATT+AGG | - | chr3_3:21694850-21694869 | Msa0446310:intron | 30.0% |
| CCAAACTTAAACTCATACAA+TGG | + | chr3_3:21694911-21694930 | None:intergenic | 30.0% | |
| ! | CCATTGTATGAGTTTAAGTT+TGG | - | chr3_3:21694908-21694927 | Msa0446310:intron | 30.0% |
| ! | TTCGATTTTGTTGAAATTGC+AGG | - | chr3_3:21695115-21695134 | Msa0446310:five_prime_UTR | 30.0% |
| !! | AACTGTAGTGGGTATATGTT+TGG | + | chr3_3:21692540-21692559 | None:intergenic | 35.0% |
| AACGTAGCATATAAACGAAC+GGG | + | chr3_3:21692768-21692787 | None:intergenic | 35.0% | |
| TGACTGTGAATGTTGCTAAA+AGG | - | chr3_3:21692907-21692926 | Msa0446310:intron | 35.0% | |
| GACTGTGAATGTTGCTAAAA+GGG | - | chr3_3:21692908-21692927 | Msa0446310:intron | 35.0% | |
| ACTGTGAATGTTGCTAAAAG+GGG | - | chr3_3:21692909-21692928 | Msa0446310:intron | 35.0% | |
| TTGCTAAAAGGGGAAGAATT+AGG | - | chr3_3:21692919-21692938 | Msa0446310:intron | 35.0% | |
| GGAAGAATTAGGAACATGAA+TGG | - | chr3_3:21692930-21692949 | Msa0446310:intron | 35.0% | |
| ATTAGGAACATGAATGGATG+TGG | - | chr3_3:21692936-21692955 | Msa0446310:intron | 35.0% | |
| TTAGGAACATGAATGGATGT+GGG | - | chr3_3:21692937-21692956 | Msa0446310:intron | 35.0% | |
| ATGGATGTGGGAATATGATT+TGG | - | chr3_3:21692949-21692968 | Msa0446310:intron | 35.0% | |
| TCATGAAATTGAGACTTTGG+TGG | - | chr3_3:21693107-21693126 | Msa0446310:intron | 35.0% | |
| ACAAAAAATGGGGGCTATAT+CGG | + | chr3_3:21693396-21693415 | None:intergenic | 35.0% | |
| ! | TTCTTTGGTCCATGTGATTT+TGG | - | chr3_3:21693558-21693577 | Msa0446310:CDS | 35.0% |
| ! | TCTTTGGTCCATGTGATTTT+GGG | - | chr3_3:21693559-21693578 | Msa0446310:CDS | 35.0% |
| CTTAGTAACCCAAAATCACA+TGG | + | chr3_3:21693570-21693589 | None:intergenic | 35.0% | |
| AACAACACACATTTCAAGAG+AGG | - | chr3_3:21693602-21693621 | Msa0446310:intron | 35.0% | |
| CTAGAGAAGAACAAAGGAAA+TGG | + | chr3_3:21693771-21693790 | None:intergenic | 35.0% | |
| AAACATGAGGGAAGAAATGA+CGG | - | chr3_3:21693930-21693949 | Msa0446310:intron | 35.0% | |
| ! | AATGTCCGAACTTGTTCATA+AGG | - | chr3_3:21694180-21694199 | Msa0446310:intron | 35.0% |
| ! | ATGTCCGAACTTGTTCATAA+GGG | - | chr3_3:21694181-21694200 | Msa0446310:intron | 35.0% |
| AGTTTGGTTATAGCAAGCTT+AGG | - | chr3_3:21694494-21694513 | Msa0446310:intron | 35.0% | |
| CAGACAACAACCAATACAAT+AGG | + | chr3_3:21694531-21694550 | None:intergenic | 35.0% | |
| !!! | GTATTGGTTGTTGTCTGTTT+TGG | - | chr3_3:21694534-21694553 | Msa0446310:intron | 35.0% |
| CAAATATTATTGGCAGAGGA+AGG | + | chr3_3:21694701-21694720 | None:intergenic | 35.0% | |
| TCAGCAAATATTATTGGCAG+AGG | + | chr3_3:21694705-21694724 | None:intergenic | 35.0% | |
| !!! | GTGCTGCTGTTTTTTGTTTT+CGG | - | chr3_3:21694774-21694793 | Msa0446310:intron | 35.0% |
| !!! | TGGATTTTTGCTGTTGGTTT+TGG | - | chr3_3:21694827-21694846 | Msa0446310:intron | 35.0% |
| AATCTTTGTCTCGTTGAGTT+TGG | - | chr3_3:21694885-21694904 | Msa0446310:intron | 35.0% | |
| ! | GACAGACACATTTGAAACAT+AGG | - | chr3_3:21695022-21695041 | Msa0446310:five_prime_UTR | 35.0% |
| TTGAAATTGCAGGTCAAGTA+AGG | - | chr3_3:21695125-21695144 | Msa0446310:five_prime_UTR | 35.0% | |
| GAATTAATATTGTTGCTGGC+TGG | - | chr3_3:21695200-21695219 | Msa0446310:five_prime_UTR | 35.0% | |
| TTGGAGTAGGAGGAGATAAT+GGG | + | chr3_3:21692521-21692540 | None:intergenic | 40.0% | |
| ! | TTTGGAGTAGGAGGAGATAA+TGG | + | chr3_3:21692522-21692541 | None:intergenic | 40.0% |
| ! | AGTGGGTATATGTTTGGAGT+AGG | + | chr3_3:21692534-21692553 | None:intergenic | 40.0% |
| CAAGAATCTTTGCACAATGG+AGG | - | chr3_3:21692573-21692592 | Msa0446310:CDS | 40.0% | |
| CAAAAGACTTTAGCGTTGCT+TGG | + | chr3_3:21692611-21692630 | None:intergenic | 40.0% | |
| AGAATTCGAATTTCTTCCCC+AGG | - | chr3_3:21692717-21692736 | Msa0446310:intron | 40.0% | |
| TGATTGAGAGAGAAAGCCAT+CGG | + | chr3_3:21692866-21692885 | None:intergenic | 40.0% | |
| ACACAGACACATTTCAAGAG+AGG | - | chr3_3:21693007-21693026 | Msa0446310:intron | 40.0% | |
| TGTATGCAGGTAATTGGAGT+TGG | + | chr3_3:21693183-21693202 | None:intergenic | 40.0% | |
| ACTAGGCTAGAGAAGAACAA+AGG | + | chr3_3:21693777-21693796 | None:intergenic | 40.0% | |
| AGTAGAGACTCAACTCGAAA+AGG | - | chr3_3:21693903-21693922 | Msa0446310:intron | 40.0% | |
| AAGGCAACTAGGAGAAAAGA+TGG | - | chr3_3:21693972-21693991 | Msa0446310:intron | 40.0% | |
| ATTGTAAGTCACATGAGCTC+TGG | - | chr3_3:21694093-21694112 | Msa0446310:intron | 40.0% | |
| !! | TTCAAGTTGAGATGGATTGG+TGG | - | chr3_3:21694276-21694295 | Msa0446310:intron | 40.0% |
| ACAGGAAACACCAGTAAGTT+TGG | + | chr3_3:21694369-21694388 | None:intergenic | 40.0% | |
| ! | TACTGGTGTTTCCTGTTTTC+TGG | - | chr3_3:21694373-21694392 | Msa0446310:intron | 40.0% |
| !! | TTTCCTGTTTTCTGGTGTGA+GGG | - | chr3_3:21694381-21694400 | Msa0446310:intron | 40.0% |
| AACTAGCCCAAAAACCTCTA+TGG | + | chr3_3:21694474-21694493 | None:intergenic | 40.0% | |
| !!! | GGTTTTTGGGCTAGTTAGTT+TGG | - | chr3_3:21694478-21694497 | Msa0446310:intron | 40.0% |
| TAGGCACATTTCCCTTGTAT+AGG | - | chr3_3:21694575-21694594 | Msa0446310:intron | 40.0% | |
| CACATTTCCCTTGTATAGGT+GGG | - | chr3_3:21694579-21694598 | Msa0446310:intron | 40.0% | |
| ! | TCAGCGCCTTTGTATGTTTT+CGG | - | chr3_3:21694651-21694670 | Msa0446310:intron | 40.0% |
| TCGCAACCGAAAACATACAA+AGG | + | chr3_3:21694660-21694679 | None:intergenic | 40.0% | |
| ACAAAAAACAGCAGCACCAA+GGG | + | chr3_3:21694771-21694790 | None:intergenic | 40.0% | |
| AACAAAAAACAGCAGCACCA+AGG | + | chr3_3:21694772-21694791 | None:intergenic | 40.0% | |
| !! | TTGGTGTGGATTTTTGCTGT+TGG | - | chr3_3:21694821-21694840 | Msa0446310:intron | 40.0% |
| ACTCAACGAGACAAAGATTG+TGG | + | chr3_3:21694884-21694903 | None:intergenic | 40.0% | |
| ! | TTGGATTTGCTTAAGAGACG+CGG | - | chr3_3:21694927-21694946 | Msa0446310:intron | 40.0% |
| ! | GGGTATATGTTTGGAGTAGG+AGG | + | chr3_3:21692531-21692550 | None:intergenic | 45.0% |
| TCGAAAAGGAGCGAAACATG+AGG | - | chr3_3:21693917-21693936 | Msa0446310:intron | 45.0% | |
| CGAAAAGGAGCGAAACATGA+GGG | - | chr3_3:21693918-21693937 | Msa0446310:intron | 45.0% | |
| GAAGAGAGTCAAAGGCAACT+AGG | - | chr3_3:21693961-21693980 | Msa0446310:intron | 45.0% | |
| ! | TAAGTCACATGAGCTCTGGT+TGG | - | chr3_3:21694097-21694116 | Msa0446310:intron | 45.0% |
| ! | AAGTCACATGAGCTCTGGTT+GGG | - | chr3_3:21694098-21694117 | Msa0446310:intron | 45.0% |
| CACGGCTTAATGCATTTGTG+AGG | - | chr3_3:21694302-21694321 | Msa0446310:intron | 45.0% | |
| !! | GTTTCCTGTTTTCTGGTGTG+AGG | - | chr3_3:21694380-21694399 | Msa0446310:intron | 45.0% |
| !! | TGTTTTCTGGTGTGAGGGTT+CGG | - | chr3_3:21694386-21694405 | Msa0446310:intron | 45.0% |
| TCTATGGCTGGTGTGCTTTA+AGG | + | chr3_3:21694458-21694477 | None:intergenic | 45.0% | |
| TTAAAGCACACCAGCCATAG+AGG | - | chr3_3:21694457-21694476 | Msa0446310:intron | 45.0% | |
| ! | ACACCAGCCATAGAGGTTTT+TGG | - | chr3_3:21694464-21694483 | Msa0446310:intron | 45.0% |
| ! | CACCAGCCATAGAGGTTTTT+GGG | - | chr3_3:21694465-21694484 | Msa0446310:intron | 45.0% |
| !!! | TGGTTGTTGTCTGTTTTGGC+AGG | - | chr3_3:21694538-21694557 | Msa0446310:intron | 45.0% |
| !!! | GGTTGTTGTCTGTTTTGGCA+GGG | - | chr3_3:21694539-21694558 | Msa0446310:intron | 45.0% |
| GCACATTTCCCTTGTATAGG+TGG | - | chr3_3:21694578-21694597 | Msa0446310:intron | 45.0% | |
| ! | TTCCCTTGTATAGGTGGGTT+TGG | - | chr3_3:21694584-21694603 | Msa0446310:intron | 45.0% |
| TGCCAAACCCACCTATACAA+GGG | + | chr3_3:21694589-21694608 | None:intergenic | 45.0% | |
| ATGCCAAACCCACCTATACA+AGG | + | chr3_3:21694590-21694609 | None:intergenic | 45.0% | |
| AAACAAGGCGAAACACCTAG+AGG | + | chr3_3:21694632-21694651 | None:intergenic | 45.0% | |
| !! | CATACAAAGGCGCTGAAACA+AGG | + | chr3_3:21694647-21694666 | None:intergenic | 45.0% |
| ! | ATGTTTTCGGTTGCGAGTGT+TGG | - | chr3_3:21694664-21694683 | Msa0446310:intron | 45.0% |
| ! | TTTTCGGTTGTGTGACAGCT+TGG | - | chr3_3:21694790-21694809 | Msa0446310:intron | 45.0% |
| TTTCGGTTGTGTGACAGCTT+GGG | - | chr3_3:21694791-21694810 | Msa0446310:intron | 45.0% | |
| !!! | TTATTTTGAATATTTTTATA+GGG | - | chr3_3:21694124-21694143 | Msa0446310:intron | 5.0% |
| ! | AGTCACATGAGCTCTGGTTG+GGG | - | chr3_3:21694099-21694118 | Msa0446310:intron | 50.0% |
| !! | GAGATGGATTGGTGGAGACA+CGG | - | chr3_3:21694284-21694303 | Msa0446310:intron | 50.0% |
| GAACCCTCACACCAGAAAAC+AGG | + | chr3_3:21694387-21694406 | None:intergenic | 50.0% | |
| AGCCCAAAAACCTCTATGGC+TGG | + | chr3_3:21694470-21694489 | None:intergenic | 50.0% | |
| !! | GTTTTGGCAGGGTAGTGATG+TGG | - | chr3_3:21694550-21694569 | Msa0446310:intron | 50.0% |
| GTGGGTTTGGCATGACCTTT+GGG | - | chr3_3:21694597-21694616 | Msa0446310:intron | 50.0% | |
| GTTTGGCATGACCTTTGGGT+TGG | - | chr3_3:21694601-21694620 | Msa0446310:intron | 50.0% | |
| !! | GCATGACCTTTGGGTTGGTT+TGG | - | chr3_3:21694606-21694625 | Msa0446310:intron | 50.0% |
| TAGAGGCCAAACCAACCCAA+AGG | + | chr3_3:21694615-21694634 | None:intergenic | 50.0% | |
| !! | TTTGGGTTGGTTTGGCCTCT+AGG | - | chr3_3:21694614-21694633 | Msa0446310:intron | 50.0% |
| TTCGGTTGTGTGACAGCTTG+GGG | - | chr3_3:21694792-21694811 | Msa0446310:intron | 50.0% | |
| ! | TGACAGCTTGGGGAAGCTTT+TGG | - | chr3_3:21694802-21694821 | Msa0446310:intron | 50.0% |
| ! | TTCGGCTGCTGTTTGTGCAG+TGG | - | chr3_3:21694404-21694423 | Msa0446310:intron | 55.0% |
| GCAGGGTAGTGATGTGGTGT+AGG | - | chr3_3:21694556-21694575 | Msa0446310:intron | 55.0% | |
| ! | GGTGGGTTTGGCATGACCTT+TGG | - | chr3_3:21694596-21694615 | Msa0446310:intron | 55.0% |
| TGTTAGCTGTTGCACGCCCT+TGG | - | chr3_3:21694752-21694771 | Msa0446310:intron | 55.0% | |
| ! | GCTTGGGGAAGCTTTTGGTG+TGG | - | chr3_3:21694807-21694826 | Msa0446310:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 21692512 | 21695244 | 21692512 | ID=Msa0446310;Name=Msa0446310 |
| chr3_3 | mRNA | 21692512 | 21695244 | 21692512 | ID=Msa0446310-mRNA-1;Parent=Msa0446310;Name=Msa0446310-mRNA-1;_AED=0.07;_eAED=0.07;_QI=262|0.33|0.75|0.75|0.66|0.75|4|38|105 |
| chr3_3 | exon | 21692512 | 21692619 | 21692512 | ID=Msa0446310-mRNA-1:exon:4541;Parent=Msa0446310-mRNA-1 |
| chr3_3 | exon | 21693526 | 21693611 | 21693526 | ID=Msa0446310-mRNA-1:exon:4540;Parent=Msa0446310-mRNA-1 |
| chr3_3 | exon | 21693706 | 21693902 | 21693706 | ID=Msa0446310-mRNA-1:exon:4539;Parent=Msa0446310-mRNA-1 |
| chr3_3 | exon | 21695018 | 21695244 | 21695018 | ID=Msa0446310-mRNA-1:exon:4538;Parent=Msa0446310-mRNA-1 |
| chr3_3 | five_prime_UTR | 21695018 | 21695244 | 21695018 | ID=Msa0446310-mRNA-1:five_prime_utr;Parent=Msa0446310-mRNA-1 |
| chr3_3 | five_prime_UTR | 21693868 | 21693902 | 21693868 | ID=Msa0446310-mRNA-1:five_prime_utr;Parent=Msa0446310-mRNA-1 |
| chr3_3 | CDS | 21693706 | 21693867 | 21693706 | ID=Msa0446310-mRNA-1:cds;Parent=Msa0446310-mRNA-1 |
| chr3_3 | CDS | 21693526 | 21693611 | 21693526 | ID=Msa0446310-mRNA-1:cds;Parent=Msa0446310-mRNA-1 |
| chr3_3 | CDS | 21692550 | 21692619 | 21692550 | ID=Msa0446310-mRNA-1:cds;Parent=Msa0446310-mRNA-1 |
| chr3_3 | three_prime_UTR | 21692512 | 21692549 | 21692512 | ID=Msa0446310-mRNA-1:three_prime_utr;Parent=Msa0446310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
