Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804080 | XP_024630486.2 | 93.151 | 73 | 5 | 0 | 1 | 73 | 90 | 162 | 1.81e-37 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804080 | A0A072TJZ5 | 93.151 | 73 | 5 | 0 | 1 | 73 | 138 | 210 | 3.14e-37 | 135 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0110970 | Msa0804080 | 0.809264 | 2.061832e-50 | -8.615850e-47 |
| Msa0124340 | Msa0804080 | 0.817137 | 3.854631e-52 | -8.615850e-47 |
| Msa0410500 | Msa0804080 | 0.800506 | 1.396145e-48 | -8.615850e-47 |
| Msa0446310 | Msa0804080 | 0.897765 | 1.023112e-76 | -8.615850e-47 |
| Msa0298380 | Msa0804080 | 0.891303 | 4.494659e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 29 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTTAAGAAGGATAATTTA+TGG | 0.220795 | 5_3:-19661111 | Msa0804080:three_prime_UTR |
| TTTGGAGTAGGAGGAGATAA+TGG | 0.273021 | 5_3:+19663914 | None:intergenic |
| GCAAGAAATTGAAAGAGATT+TGG | 0.318762 | 5_3:+19663775 | None:intergenic |
| AGAAGAATTAATATTGTTGC+TGG | 0.356237 | 5_3:-19661234 | Msa0804080:exon |
| ACTTGTAAATAGGTTGTTCT+AGG | 0.367870 | 5_3:-19662589 | Msa0804080:intron |
| AACTGTAGTGGGTATATGTT+TGG | 0.383486 | 5_3:+19663896 | None:intergenic |
| TTAATGTTATAGTACTTTGC+AGG | 0.384288 | 5_3:-19661076 | None:intergenic |
| AATGTCCGAACTTGTTCATA+AGG | 0.390229 | 5_3:-19662251 | Msa0804080:CDS |
| CAAAAGACTTTAGCGTTGCT+TGG | 0.419332 | 5_3:+19663825 | None:intergenic |
| ATTACCCTTATGAACAAGTT+CGG | 0.445515 | 5_3:+19662246 | None:intergenic |
| TGAAATTGCAGGTCAAAGTA+AGG | 0.452565 | 5_3:-19661305 | Msa0804080:intron |
| GGGTATATGTTTGGAGTAGG+AGG | 0.476386 | 5_3:+19663905 | None:intergenic |
| AGTAGAGACTCAACTCGAAA+AGG | 0.477567 | 5_3:-19662528 | Msa0804080:CDS |
| ATGTCCGAACTTGTTCATAA+GGG | 0.482857 | 5_3:-19662250 | Msa0804080:intron |
| TTGGAGTAGGAGGAGATAAT+GGG | 0.486207 | 5_3:+19663915 | None:intergenic |
| AAAGATGGAGAAACAATTTG+AGG | 0.500344 | 5_3:-19662444 | Msa0804080:CDS |
| GAATTAATATTGTTGCTGGC+TGG | 0.506661 | 5_3:-19661230 | Msa0804080:exon |
| AAGGCAACTAGGAGAAAAGA+TGG | 0.513002 | 5_3:-19662459 | Msa0804080:CDS |
| AGAATTCGAATTTCTTCCCC+AGG | 0.515854 | 5_3:-19663716 | Msa0804080:intron |
| GAAGAGAGTCAAAGGCAACT+AGG | 0.523426 | 5_3:-19662470 | Msa0804080:CDS |
| AGTGGGTATATGTTTGGAGT+AGG | 0.532387 | 5_3:+19663902 | None:intergenic |
| CAAAATTTGAAGAGAGTCAA+AGG | 0.540392 | 5_3:-19662478 | Msa0804080:CDS |
| AAATATAACAAATAAAATTG+TGG | 0.579963 | 5_3:+19661205 | None:intergenic |
| AAACATGAGGGAAGAAATGA+CGG | 0.594283 | 5_3:-19662501 | Msa0804080:CDS |
| TTTACTCAAGAAACTGTAGT+GGG | 0.596225 | 5_3:+19663885 | None:intergenic |
| CAAGAATCTTTGCACAATGG+AGG | 0.608945 | 5_3:-19663860 | Msa0804080:five_prime_UTR |
| CGAAAAGGAGCGAAACATGA+GGG | 0.616399 | 5_3:-19662513 | Msa0804080:CDS |
| AAACAAGAATCTTTGCACAA+TGG | 0.628978 | 5_3:-19663863 | Msa0804080:five_prime_UTR |
| TCGAAAAGGAGCGAAACATG+AGG | 0.631954 | 5_3:-19662514 | Msa0804080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTATTTTGAATATTTTTAT+AGG | - | chr5_3:19662692-19662711 | Msa0804080:intron | 10.0% |
| !! | AAATATAACAAATAAAATTG+TGG | + | chr5_3:19663798-19663817 | None:intergenic | 10.0% |
| !!! | TTGTTATATTTGTTAATTTT+TGG | - | chr5_3:19663807-19663826 | Msa0804080:five_prime_UTR | 10.0% |
| !! | AAAAAACTAATAATCATAAA+TGG | + | chr5_3:19663866-19663885 | None:intergenic | 10.0% |
| !!! | AATTTGATTTCAAAACAATT+TGG | - | chr5_3:19662237-19662256 | Msa0804080:intron | 15.0% |
| !! | TGATTATTTATATACTTACT+TGG | + | chr5_3:19662619-19662638 | None:intergenic | 15.0% |
| !!! | TTTTAATCAGCAAATATTAT+TGG | + | chr5_3:19663280-19663299 | None:intergenic | 15.0% |
| !!! | ATTTTACCAAAATTGATCAA+AGG | + | chr5_3:19661361-19661380 | None:intergenic | 20.0% |
| !!! | CAATTTGATTTCAAACAATT+TGG | - | chr5_3:19661646-19661665 | Msa0804080:intron | 20.0% |
| !! | TCAAATGAAAACAAAAAATG+GGG | + | chr5_3:19661974-19661993 | None:intergenic | 20.0% |
| !! | GTCAAATGAAAACAAAAAAT+GGG | + | chr5_3:19661975-19661994 | None:intergenic | 20.0% |
| !! | AGTCAAATGAAAACAAAAAA+TGG | + | chr5_3:19661976-19661995 | None:intergenic | 20.0% |
| !! | AGAAAACTTAATTACTTCTT+TGG | - | chr5_3:19662111-19662130 | Msa0804080:intron | 20.0% |
| !! | TAGTGCATAATAGATAATAT+AGG | - | chr5_3:19662368-19662387 | Msa0804080:intron | 20.0% |
| !!! | TGAATATTTTTATAGGGTAT+CGG | - | chr5_3:19662699-19662718 | Msa0804080:intron | 20.0% |
| !! | TCTCAACTTGAAATAAAATT+TGG | + | chr5_3:19662837-19662856 | None:intergenic | 20.0% |
| !!! | AATTTTATTTCAAGTTGAGA+TGG | - | chr5_3:19662837-19662856 | Msa0804080:intron | 20.0% |
| !! | CTGATTAAAAAAAATGCTAT+TGG | - | chr5_3:19663290-19663309 | Msa0804080:intron | 20.0% |
| !! | GTTTGAATATATGCTAAAAT+TGG | - | chr5_3:19663518-19663537 | Msa0804080:intron | 20.0% |
| !!! | TTTTCTATACAATTAATGGA+TGG | + | chr5_3:19663646-19663665 | None:intergenic | 20.0% |
| !!! | GACTTTTTCTATACAATTAA+TGG | + | chr5_3:19663650-19663669 | None:intergenic | 20.0% |
| !!! | AGTTTTTTTTTGTGTTAAGA+AGG | - | chr5_3:19663878-19663897 | Msa0804080:five_prime_UTR | 20.0% |
| !! | GTTTTTCCTTTGATCAATTT+TGG | - | chr5_3:19661352-19661371 | Msa0804080:intron | 25.0% |
| !!! | GAATATGATTTGGTGATTTT+GGG | - | chr5_3:19661526-19661545 | Msa0804080:intron | 25.0% |
| ! | TTAAAAATGAGATGAGAACT+GGG | + | chr5_3:19661602-19661621 | None:intergenic | 25.0% |
| !!! | TTCTCATCTCATTTTTAAGT+TGG | - | chr5_3:19661604-19661623 | Msa0804080:intron | 25.0% |
| !!! | TTTTTAAGTTGGTTTCTTCA+CGG | - | chr5_3:19661615-19661634 | Msa0804080:intron | 25.0% |
| !!! | TGACTTTTTTAAGATAGAGT+AGG | - | chr5_3:19661900-19661919 | Msa0804080:intron | 25.0% |
| ! | CAAATGAAAACAAAAAATGG+GGG | + | chr5_3:19661973-19661992 | None:intergenic | 25.0% |
| ! | GATGATTCTATGTAGTATAA+TGG | - | chr5_3:19662026-19662045 | Msa0804080:intron | 25.0% |
| ! | TCTTCATGAAAATGAAAGTT+TGG | - | chr5_3:19662262-19662281 | Msa0804080:CDS | 25.0% |
| !!! | TATAGGTTGTTCTAGAATTA+AGG | - | chr5_3:19662385-19662404 | Msa0804080:intron | 25.0% |
| ! | ATTAAGGTACACTTGTAAAT+AGG | - | chr5_3:19662401-19662420 | Msa0804080:intron | 25.0% |
| ! | GAAACAATTTGAGGAAAAAA+TGG | - | chr5_3:19662565-19662584 | Msa0804080:five_prime_UTR | 25.0% |
| ! | TAGTTATGTTCCTATTGTAT+TGG | - | chr5_3:19663087-19663106 | Msa0804080:intron | 25.0% |
| ! | TAAAAAAAATGCTATTGGTG+TGG | - | chr5_3:19663295-19663314 | Msa0804080:intron | 25.0% |
| ! | CCTAATAATAACGAAAACAA+CGG | + | chr5_3:19663422-19663441 | None:intergenic | 25.0% |
| !!! | CGTTGTTTTCGTTATTATTA+GGG | - | chr5_3:19663420-19663439 | Msa0804080:intron | 25.0% |
| !!! | AACATCTTGCTATTGTTTTT+TGG | - | chr5_3:19663555-19663574 | Msa0804080:intron | 25.0% |
| !!! | ACATCTTGCTATTGTTTTTT+GGG | - | chr5_3:19663556-19663575 | Msa0804080:intron | 25.0% |
| ! | AGAAGAATTAATATTGTTGC+TGG | - | chr5_3:19663766-19663785 | Msa0804080:five_prime_UTR | 25.0% |
| ! | GTGTTAAGAAGGATAATTTA+TGG | - | chr5_3:19663889-19663908 | Msa0804080:five_prime_UTR | 25.0% |
| TTTACTCAAGAAACTGTAGT+GGG | + | chr5_3:19661118-19661137 | None:intergenic | 30.0% | |
| ! | TTTTACTCAAGAAACTGTAG+TGG | + | chr5_3:19661119-19661138 | None:intergenic | 30.0% |
| AAACAAGAATCTTTGCACAA+TGG | - | chr5_3:19661137-19661156 | Msa0804080:three_prime_UTR | 30.0% | |
| GCAAGAAATTGAAAGAGATT+TGG | + | chr5_3:19661228-19661247 | None:intergenic | 30.0% | |
| ! | GAATTTTGAATACTTACCTG+GGG | + | chr5_3:19661303-19661322 | None:intergenic | 30.0% |
| ! | CGAATTTTGAATACTTACCT+GGG | + | chr5_3:19661304-19661323 | None:intergenic | 30.0% |
| ! | TCGAATTTTGAATACTTACC+TGG | + | chr5_3:19661305-19661324 | None:intergenic | 30.0% |
| AAACGTAGCATATAAACGAA+CGG | + | chr5_3:19661336-19661355 | None:intergenic | 30.0% | |
| !!! | TTGCATGAATGTCTTGTTTT+TGG | - | chr5_3:19661387-19661406 | Msa0804080:intron | 30.0% |
| !!! | TGCATGAATGTCTTGTTTTT+GGG | - | chr5_3:19661388-19661407 | Msa0804080:intron | 30.0% |
| TGTCAATGATTTATTTCCGA+TGG | - | chr5_3:19661414-19661433 | Msa0804080:intron | 30.0% | |
| TTCTCTCTCAATCAAAATCT+AGG | - | chr5_3:19661439-19661458 | Msa0804080:intron | 30.0% | |
| TCTCTCTCAATCAAAATCTA+GGG | - | chr5_3:19661440-19661459 | Msa0804080:intron | 30.0% | |
| !!! | GGAATATGATTTGGTGATTT+TGG | - | chr5_3:19661525-19661544 | Msa0804080:intron | 30.0% |
| !!! | TGATTTTGGGTTACTAAGAA+TGG | - | chr5_3:19661539-19661558 | Msa0804080:intron | 30.0% |
| CTTAAAAATGAGATGAGAAC+TGG | + | chr5_3:19661603-19661622 | None:intergenic | 30.0% | |
| TCTTCATGAAATTGAGACTT+TGG | - | chr5_3:19661671-19661690 | Msa0804080:intron | 30.0% | |
| TGTATTTGTATGCAGGTAAT+TGG | + | chr5_3:19661756-19661775 | None:intergenic | 30.0% | |
| CTAACTATGTATTTGTATGC+AGG | + | chr5_3:19661763-19661782 | None:intergenic | 30.0% | |
| TTTAGTAACCCAAAATCACA+TGG | + | chr5_3:19662138-19662157 | None:intergenic | 30.0% | |
| !!! | GATTTTGGGTTACTAAAGAA+TGG | - | chr5_3:19662141-19662160 | Msa0804080:intron | 30.0% |
| TCATGAAAATGAAAGTTTGG+TGG | - | chr5_3:19662265-19662284 | Msa0804080:CDS | 30.0% | |
| TAGAGAAGAACAAAGGAAAT+GGG | + | chr5_3:19662339-19662358 | None:intergenic | 30.0% | |
| ATCTATTATGCACTACAACT+AGG | + | chr5_3:19662363-19662382 | None:intergenic | 30.0% | |
| ACTTGTAAATAGGTTGTTCT+AGG | - | chr5_3:19662411-19662430 | Msa0804080:CDS | 30.0% | |
| CAAAATTTGAAGAGAGTCAA+AGG | - | chr5_3:19662522-19662541 | Msa0804080:CDS | 30.0% | |
| AAAGATGGAGAAACAATTTG+AGG | - | chr5_3:19662556-19662575 | Msa0804080:exon | 30.0% | |
| !!! | ATATTTTTATAGGGTATCGG+TGG | - | chr5_3:19662702-19662721 | Msa0804080:intron | 30.0% |
| ATTACCCTTATGAACAAGTT+CGG | + | chr5_3:19662757-19662776 | None:intergenic | 30.0% | |
| !! | TATTTCAAGTTGAGATGGAT+TGG | - | chr5_3:19662842-19662861 | Msa0804080:intron | 30.0% |
| !! | TGAGAATTCGTTTTTGCAAT+TGG | - | chr5_3:19662904-19662923 | Msa0804080:intron | 30.0% |
| GGTTAATAATCCAAACTTAC+TGG | - | chr5_3:19662925-19662944 | Msa0804080:intron | 30.0% | |
| !! | CCGTTGTTTTCGTTATTATT+AGG | - | chr5_3:19663419-19663438 | Msa0804080:intron | 30.0% |
| CCAAACTTAAACTCATACAA+TGG | + | chr5_3:19663480-19663499 | None:intergenic | 30.0% | |
| ! | CCATTGTATGAGTTTAAGTT+TGG | - | chr5_3:19663477-19663496 | Msa0804080:intron | 30.0% |
| ! | TTCGATTTTGTTGAAATTGC+AGG | - | chr5_3:19663684-19663703 | Msa0804080:intron | 30.0% |
| !! | AACTGTAGTGGGTATATGTT+TGG | + | chr5_3:19661107-19661126 | None:intergenic | 35.0% |
| AACGTAGCATATAAACGAAC+GGG | + | chr5_3:19661335-19661354 | None:intergenic | 35.0% | |
| TGACTGTGAATGTTGCTAAA+AGG | - | chr5_3:19661474-19661493 | Msa0804080:intron | 35.0% | |
| GACTGTGAATGTTGCTAAAA+GGG | - | chr5_3:19661475-19661494 | Msa0804080:intron | 35.0% | |
| ACTGTGAATGTTGCTAAAAG+GGG | - | chr5_3:19661476-19661495 | Msa0804080:intron | 35.0% | |
| TTGCTAAAAGGGGAAGAATT+AGG | - | chr5_3:19661486-19661505 | Msa0804080:intron | 35.0% | |
| GGAAGAATTAGGAACATGAA+TGG | - | chr5_3:19661497-19661516 | Msa0804080:intron | 35.0% | |
| ATTAGGAACATGAATGGATG+TGG | - | chr5_3:19661503-19661522 | Msa0804080:intron | 35.0% | |
| TTAGGAACATGAATGGATGT+GGG | - | chr5_3:19661504-19661523 | Msa0804080:intron | 35.0% | |
| ATGGATGTGGGAATATGATT+TGG | - | chr5_3:19661516-19661535 | Msa0804080:intron | 35.0% | |
| TCATGAAATTGAGACTTTGG+TGG | - | chr5_3:19661674-19661693 | Msa0804080:intron | 35.0% | |
| ACAAAAAATGGGGGCTATAT+CGG | + | chr5_3:19661964-19661983 | None:intergenic | 35.0% | |
| ! | TTCTTTGGTCCATGTGATTT+TGG | - | chr5_3:19662126-19662145 | Msa0804080:intron | 35.0% |
| ! | TCTTTGGTCCATGTGATTTT+GGG | - | chr5_3:19662127-19662146 | Msa0804080:intron | 35.0% |
| AACAACACACATTTCAAGAG+AGG | - | chr5_3:19662171-19662190 | Msa0804080:intron | 35.0% | |
| CTAGAGAAGAACAAAGGAAA+TGG | + | chr5_3:19662340-19662359 | None:intergenic | 35.0% | |
| AAACATGAGGGAAGAAATGA+CGG | - | chr5_3:19662499-19662518 | Msa0804080:CDS | 35.0% | |
| ! | AATGTCCGAACTTGTTCATA+AGG | - | chr5_3:19662749-19662768 | Msa0804080:intron | 35.0% |
| ! | ATGTCCGAACTTGTTCATAA+GGG | - | chr5_3:19662750-19662769 | Msa0804080:intron | 35.0% |
| AGTTTGGTTATAGCAAGCTT+AGG | - | chr5_3:19663063-19663082 | Msa0804080:intron | 35.0% | |
| CAGACAACAACCAATACAAT+AGG | + | chr5_3:19663100-19663119 | None:intergenic | 35.0% | |
| !!! | GTATTGGTTGTTGTCTGTTT+TGG | - | chr5_3:19663103-19663122 | Msa0804080:intron | 35.0% |
| CAAATATTATTGGCAGAGGA+AGG | + | chr5_3:19663270-19663289 | None:intergenic | 35.0% | |
| TCAGCAAATATTATTGGCAG+AGG | + | chr5_3:19663274-19663293 | None:intergenic | 35.0% | |
| !!! | GTGCTGCTGTTTTTTGTTTT+CGG | - | chr5_3:19663343-19663362 | Msa0804080:intron | 35.0% |
| !!! | TGGATTTTTGCTGTTGGTTT+TGG | - | chr5_3:19663396-19663415 | Msa0804080:intron | 35.0% |
| AATCTTTGTCTCGTTGAGTT+TGG | - | chr5_3:19663454-19663473 | Msa0804080:intron | 35.0% | |
| ! | GACAGACACATTTGAAACAT+AGG | - | chr5_3:19663591-19663610 | Msa0804080:intron | 35.0% |
| TGAAATTGCAGGTCAAAGTA+AGG | - | chr5_3:19663695-19663714 | Msa0804080:intron | 35.0% | |
| GAATTAATATTGTTGCTGGC+TGG | - | chr5_3:19663770-19663789 | Msa0804080:five_prime_UTR | 35.0% | |
| TTGGAGTAGGAGGAGATAAT+GGG | + | chr5_3:19661088-19661107 | None:intergenic | 40.0% | |
| ! | TTTGGAGTAGGAGGAGATAA+TGG | + | chr5_3:19661089-19661108 | None:intergenic | 40.0% |
| ! | AGTGGGTATATGTTTGGAGT+AGG | + | chr5_3:19661101-19661120 | None:intergenic | 40.0% |
| CAAGAATCTTTGCACAATGG+AGG | - | chr5_3:19661140-19661159 | Msa0804080:three_prime_UTR | 40.0% | |
| CAAAAGACTTTAGCGTTGCT+TGG | + | chr5_3:19661178-19661197 | None:intergenic | 40.0% | |
| AGAATTCGAATTTCTTCCCC+AGG | - | chr5_3:19661284-19661303 | Msa0804080:CDS | 40.0% | |
| TGATTGAGAGAGAAAGCCAT+CGG | + | chr5_3:19661433-19661452 | None:intergenic | 40.0% | |
| ACACAGACACATTTCAAGAG+AGG | - | chr5_3:19661574-19661593 | Msa0804080:intron | 40.0% | |
| TGTATGCAGGTAATTGGAGT+TGG | + | chr5_3:19661750-19661769 | None:intergenic | 40.0% | |
| ACTAGGCTAGAGAAGAACAA+AGG | + | chr5_3:19662346-19662365 | None:intergenic | 40.0% | |
| AGTAGAGACTCAACTCGAAA+AGG | - | chr5_3:19662472-19662491 | Msa0804080:CDS | 40.0% | |
| AAGGCAACTAGGAGAAAAGA+TGG | - | chr5_3:19662541-19662560 | Msa0804080:CDS | 40.0% | |
| ATTGTAAGTCACATGAGCTC+TGG | - | chr5_3:19662662-19662681 | Msa0804080:intron | 40.0% | |
| !! | TTCAAGTTGAGATGGATTGG+TGG | - | chr5_3:19662845-19662864 | Msa0804080:intron | 40.0% |
| ACAGGAAACACCAGTAAGTT+TGG | + | chr5_3:19662938-19662957 | None:intergenic | 40.0% | |
| ! | TACTGGTGTTTCCTGTTTTC+TGG | - | chr5_3:19662942-19662961 | Msa0804080:intron | 40.0% |
| !! | TTTCCTGTTTTCTGGTGTGA+GGG | - | chr5_3:19662950-19662969 | Msa0804080:intron | 40.0% |
| AACTAGCCCAAAAACCTCTA+TGG | + | chr5_3:19663043-19663062 | None:intergenic | 40.0% | |
| !!! | GGTTTTTGGGCTAGTTAGTT+TGG | - | chr5_3:19663047-19663066 | Msa0804080:intron | 40.0% |
| TAGGCACATTTCCCTTGTAT+AGG | - | chr5_3:19663144-19663163 | Msa0804080:intron | 40.0% | |
| CACATTTCCCTTGTATAGGT+GGG | - | chr5_3:19663148-19663167 | Msa0804080:intron | 40.0% | |
| ! | TCAGCGCCTTTGTATGTTTT+CGG | - | chr5_3:19663220-19663239 | Msa0804080:intron | 40.0% |
| TCGCAACCGAAAACATACAA+AGG | + | chr5_3:19663229-19663248 | None:intergenic | 40.0% | |
| ACAAAAAACAGCAGCACCAA+GGG | + | chr5_3:19663340-19663359 | None:intergenic | 40.0% | |
| AACAAAAAACAGCAGCACCA+AGG | + | chr5_3:19663341-19663360 | None:intergenic | 40.0% | |
| !! | TTGGTGTGGATTTTTGCTGT+TGG | - | chr5_3:19663390-19663409 | Msa0804080:intron | 40.0% |
| ACTCAACGAGACAAAGATTG+TGG | + | chr5_3:19663453-19663472 | None:intergenic | 40.0% | |
| ! | TTGGATTTGCTTAAGAGACG+CGG | - | chr5_3:19663496-19663515 | Msa0804080:intron | 40.0% |
| ! | GGGTATATGTTTGGAGTAGG+AGG | + | chr5_3:19661098-19661117 | None:intergenic | 45.0% |
| TCGAAAAGGAGCGAAACATG+AGG | - | chr5_3:19662486-19662505 | Msa0804080:CDS | 45.0% | |
| CGAAAAGGAGCGAAACATGA+GGG | - | chr5_3:19662487-19662506 | Msa0804080:CDS | 45.0% | |
| GAAGAGAGTCAAAGGCAACT+AGG | - | chr5_3:19662530-19662549 | Msa0804080:CDS | 45.0% | |
| ! | TAAGTCACATGAGCTCTGGT+TGG | - | chr5_3:19662666-19662685 | Msa0804080:intron | 45.0% |
| ! | AAGTCACATGAGCTCTGGTT+GGG | - | chr5_3:19662667-19662686 | Msa0804080:intron | 45.0% |
| CACGGCTTAATGCATTTGTG+AGG | - | chr5_3:19662871-19662890 | Msa0804080:intron | 45.0% | |
| !! | GTTTCCTGTTTTCTGGTGTG+AGG | - | chr5_3:19662949-19662968 | Msa0804080:intron | 45.0% |
| !! | TGTTTTCTGGTGTGAGGGTT+CGG | - | chr5_3:19662955-19662974 | Msa0804080:intron | 45.0% |
| TCTATGGCTGGTGTGCTTTA+AGG | + | chr5_3:19663027-19663046 | None:intergenic | 45.0% | |
| TTAAAGCACACCAGCCATAG+AGG | - | chr5_3:19663026-19663045 | Msa0804080:intron | 45.0% | |
| ! | ACACCAGCCATAGAGGTTTT+TGG | - | chr5_3:19663033-19663052 | Msa0804080:intron | 45.0% |
| ! | CACCAGCCATAGAGGTTTTT+GGG | - | chr5_3:19663034-19663053 | Msa0804080:intron | 45.0% |
| !!! | TGGTTGTTGTCTGTTTTGGC+AGG | - | chr5_3:19663107-19663126 | Msa0804080:intron | 45.0% |
| !!! | GGTTGTTGTCTGTTTTGGCA+GGG | - | chr5_3:19663108-19663127 | Msa0804080:intron | 45.0% |
| GCACATTTCCCTTGTATAGG+TGG | - | chr5_3:19663147-19663166 | Msa0804080:intron | 45.0% | |
| ! | TTCCCTTGTATAGGTGGGTT+TGG | - | chr5_3:19663153-19663172 | Msa0804080:intron | 45.0% |
| TGCCAAACCCACCTATACAA+GGG | + | chr5_3:19663158-19663177 | None:intergenic | 45.0% | |
| ATGCCAAACCCACCTATACA+AGG | + | chr5_3:19663159-19663178 | None:intergenic | 45.0% | |
| AAACAAGGCGAAACACCTAG+AGG | + | chr5_3:19663201-19663220 | None:intergenic | 45.0% | |
| !! | CATACAAAGGCGCTGAAACA+AGG | + | chr5_3:19663216-19663235 | None:intergenic | 45.0% |
| ! | ATGTTTTCGGTTGCGAGTGT+TGG | - | chr5_3:19663233-19663252 | Msa0804080:intron | 45.0% |
| ! | TTTTCGGTTGTGTGACAGCT+TGG | - | chr5_3:19663359-19663378 | Msa0804080:intron | 45.0% |
| TTTCGGTTGTGTGACAGCTT+GGG | - | chr5_3:19663360-19663379 | Msa0804080:intron | 45.0% | |
| !!! | TTATTTTGAATATTTTTATA+GGG | - | chr5_3:19662693-19662712 | Msa0804080:intron | 5.0% |
| ! | AGTCACATGAGCTCTGGTTG+GGG | - | chr5_3:19662668-19662687 | Msa0804080:intron | 50.0% |
| !! | GAGATGGATTGGTGGAGACA+CGG | - | chr5_3:19662853-19662872 | Msa0804080:intron | 50.0% |
| GAACCCTCACACCAGAAAAC+AGG | + | chr5_3:19662956-19662975 | None:intergenic | 50.0% | |
| AGCCCAAAAACCTCTATGGC+TGG | + | chr5_3:19663039-19663058 | None:intergenic | 50.0% | |
| !! | GTTTTGGCAGGGTAGTGATG+TGG | - | chr5_3:19663119-19663138 | Msa0804080:intron | 50.0% |
| GTGGGTTTGGCATGACCTTT+GGG | - | chr5_3:19663166-19663185 | Msa0804080:intron | 50.0% | |
| GTTTGGCATGACCTTTGGGT+TGG | - | chr5_3:19663170-19663189 | Msa0804080:intron | 50.0% | |
| !! | GCATGACCTTTGGGTTGGTT+TGG | - | chr5_3:19663175-19663194 | Msa0804080:intron | 50.0% |
| TAGAGGCCAAACCAACCCAA+AGG | + | chr5_3:19663184-19663203 | None:intergenic | 50.0% | |
| !! | TTTGGGTTGGTTTGGCCTCT+AGG | - | chr5_3:19663183-19663202 | Msa0804080:intron | 50.0% |
| TTCGGTTGTGTGACAGCTTG+GGG | - | chr5_3:19663361-19663380 | Msa0804080:intron | 50.0% | |
| ! | TGACAGCTTGGGGAAGCTTT+TGG | - | chr5_3:19663371-19663390 | Msa0804080:intron | 50.0% |
| ! | TTCGGCTGCTGTTTGTGCAG+TGG | - | chr5_3:19662973-19662992 | Msa0804080:intron | 55.0% |
| GCAGGGTAGTGATGTGGTGT+AGG | - | chr5_3:19663125-19663144 | Msa0804080:intron | 55.0% | |
| ! | GGTGGGTTTGGCATGACCTT+TGG | - | chr5_3:19663165-19663184 | Msa0804080:intron | 55.0% |
| TGTTAGCTGTTGCACGCCCT+TGG | - | chr5_3:19663321-19663340 | Msa0804080:intron | 55.0% | |
| ! | GCTTGGGGAAGCTTTTGGTG+TGG | - | chr5_3:19663376-19663395 | Msa0804080:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 19661079 | 19663943 | 19661079 | ID=Msa0804080;Name=Msa0804080 |
| chr5_3 | mRNA | 19661079 | 19663943 | 19661079 | ID=Msa0804080-mRNA-1;Parent=Msa0804080;Name=Msa0804080-mRNA-1;_AED=0.04;_eAED=0.04;_QI=262|0.33|0.75|0.75|0.33|0.5|4|167|96 |
| chr5_3 | exon | 19661079 | 19661316 | 19661079 | ID=Msa0804080-mRNA-1:exon:8042;Parent=Msa0804080-mRNA-1 |
| chr5_3 | exon | 19662251 | 19662308 | 19662251 | ID=Msa0804080-mRNA-1:exon:8041;Parent=Msa0804080-mRNA-1 |
| chr5_3 | exon | 19662403 | 19662599 | 19662403 | ID=Msa0804080-mRNA-1:exon:8040;Parent=Msa0804080-mRNA-1 |
| chr5_3 | exon | 19663717 | 19663943 | 19663717 | ID=Msa0804080-mRNA-1:exon:8039;Parent=Msa0804080-mRNA-1 |
| chr5_3 | five_prime_UTR | 19663717 | 19663943 | 19663717 | ID=Msa0804080-mRNA-1:five_prime_utr;Parent=Msa0804080-mRNA-1 |
| chr5_3 | five_prime_UTR | 19662565 | 19662599 | 19662565 | ID=Msa0804080-mRNA-1:five_prime_utr;Parent=Msa0804080-mRNA-1 |
| chr5_3 | CDS | 19662403 | 19662564 | 19662403 | ID=Msa0804080-mRNA-1:cds;Parent=Msa0804080-mRNA-1 |
| chr5_3 | CDS | 19662251 | 19662308 | 19662251 | ID=Msa0804080-mRNA-1:cds;Parent=Msa0804080-mRNA-1 |
| chr5_3 | CDS | 19661246 | 19661316 | 19661246 | ID=Msa0804080-mRNA-1:cds;Parent=Msa0804080-mRNA-1 |
| chr5_3 | three_prime_UTR | 19661079 | 19661245 | 19661079 | ID=Msa0804080-mRNA-1:three_prime_utr;Parent=Msa0804080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
