Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299140 | XP_003597084.1 | 96.689 | 302 | 10 | 0 | 1 | 302 | 1 | 302 | 0.0 | 608 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299140 | sp|Q9ZR04|CCD61_ARATH | 45.397 | 315 | 139 | 10 | 1 | 301 | 1 | 296 | 1.61e-76 | 238 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299140 | G7IRM6 | 96.689 | 302 | 10 | 0 | 1 | 302 | 1 | 302 | 0.0 | 608 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0261340 | Msa0299140 | 0.815356 | 9.640460e-52 | -8.615850e-47 |
| Msa0299140 | Msa0337030 | 0.844053 | 9.592350e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299140 | MtrunA17_Chr2g0323361 | 96.689 | 302 | 10 | 0 | 1 | 302 | 1 | 302 | 0.0 | 608 |
| Msa0299140 | MtrunA17_Chr2g0280941 | 41.304 | 276 | 138 | 7 | 1 | 272 | 1 | 256 | 5.83e-65 | 204 |
| Msa0299140 | MtrunA17_Chr5g0412471 | 32.714 | 269 | 167 | 7 | 28 | 290 | 69 | 329 | 4.94e-36 | 132 |
| Msa0299140 | MtrunA17_Chr5g0414271 | 33.333 | 252 | 154 | 4 | 6 | 248 | 27 | 273 | 5.77e-32 | 121 |
| Msa0299140 | MtrunA17_Chr4g0041721 | 32.787 | 244 | 146 | 7 | 36 | 270 | 77 | 311 | 1.70e-31 | 120 |
| Msa0299140 | MtrunA17_Chr3g0133211 | 32.210 | 267 | 162 | 6 | 28 | 283 | 74 | 332 | 3.69e-31 | 119 |
| Msa0299140 | MtrunA17_Chr8g0364521 | 33.636 | 220 | 137 | 3 | 32 | 247 | 75 | 289 | 6.20e-30 | 116 |
| Msa0299140 | MtrunA17_Chr5g0427191 | 28.814 | 295 | 193 | 6 | 19 | 301 | 56 | 345 | 4.87e-29 | 114 |
| Msa0299140 | MtrunA17_Chr4g0053381 | 29.675 | 246 | 159 | 6 | 64 | 301 | 97 | 336 | 1.96e-27 | 109 |
| Msa0299140 | MtrunA17_Chr5g0401271 | 32.474 | 194 | 123 | 3 | 59 | 251 | 113 | 299 | 8.89e-26 | 104 |
| Msa0299140 | MtrunA17_Chr8g0367661 | 26.299 | 308 | 191 | 7 | 19 | 300 | 62 | 359 | 8.64e-25 | 102 |
| Msa0299140 | MtrunA17_Chr3g0134261 | 31.140 | 228 | 138 | 8 | 26 | 244 | 62 | 279 | 4.72e-23 | 97.4 |
| Msa0299140 | MtrunA17_Chr1g0208231 | 28.094 | 299 | 186 | 9 | 19 | 301 | 74 | 359 | 8.91e-22 | 94.4 |
| Msa0299140 | MtrunA17_Chr3g0134781 | 32.663 | 199 | 123 | 5 | 69 | 261 | 87 | 280 | 1.75e-18 | 84.3 |
| Msa0299140 | MtrunA17_Chr4g0054011 | 27.668 | 253 | 169 | 6 | 2 | 251 | 30 | 271 | 2.30e-18 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299140 | AT4G03270.1 | 45.397 | 315 | 139 | 10 | 1 | 301 | 1 | 296 | 1.64e-77 | 238 |
| Msa0299140 | AT4G03270.2 | 45.079 | 315 | 139 | 11 | 1 | 301 | 1 | 295 | 3.37e-75 | 233 |
| Msa0299140 | AT1G70210.1 | 34.188 | 234 | 133 | 5 | 28 | 250 | 59 | 282 | 1.54e-37 | 136 |
| Msa0299140 | AT5G65420.4 | 39.378 | 193 | 106 | 6 | 28 | 214 | 54 | 241 | 1.22e-34 | 127 |
| Msa0299140 | AT5G65420.1 | 39.378 | 193 | 106 | 6 | 28 | 214 | 54 | 241 | 2.13e-34 | 127 |
| Msa0299140 | AT2G22490.1 | 32.130 | 277 | 159 | 8 | 21 | 280 | 67 | 331 | 1.04e-33 | 127 |
| Msa0299140 | AT5G65420.3 | 37.624 | 202 | 107 | 6 | 28 | 214 | 54 | 251 | 1.83e-33 | 125 |
| Msa0299140 | AT2G22490.2 | 32.014 | 278 | 159 | 9 | 21 | 280 | 67 | 332 | 5.64e-32 | 122 |
| Msa0299140 | AT5G10440.1 | 34.783 | 207 | 123 | 5 | 15 | 215 | 33 | 233 | 8.37e-30 | 115 |
| Msa0299140 | AT5G65420.2 | 38.372 | 172 | 95 | 6 | 28 | 193 | 54 | 220 | 4.67e-28 | 108 |
| Msa0299140 | AT5G10440.2 | 37.662 | 154 | 85 | 4 | 15 | 163 | 33 | 180 | 5.11e-25 | 100 |
| Msa0299140 | AT4G34160.1 | 28.141 | 199 | 138 | 2 | 64 | 261 | 102 | 296 | 3.85e-22 | 95.5 |
| Msa0299140 | AT3G50070.1 | 27.184 | 206 | 144 | 3 | 64 | 268 | 101 | 301 | 9.96e-22 | 94.4 |
| Msa0299140 | AT5G67260.1 | 28.431 | 204 | 139 | 3 | 64 | 264 | 111 | 310 | 1.01e-21 | 94.4 |
| Msa0299140 | AT5G67260.2 | 28.431 | 204 | 139 | 3 | 64 | 264 | 111 | 310 | 2.29e-21 | 93.6 |
| Msa0299140 | AT4G37630.2 | 33.143 | 175 | 101 | 6 | 38 | 204 | 59 | 225 | 1.19e-16 | 78.6 |
| Msa0299140 | AT4G37630.3 | 32.768 | 177 | 101 | 7 | 38 | 204 | 59 | 227 | 5.22e-16 | 76.6 |
| Msa0299140 | AT4G37630.1 | 32.768 | 177 | 101 | 7 | 38 | 204 | 59 | 227 | 1.16e-15 | 76.6 |
Find 70 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACCTAGCTATCAACTATT+TGG | 0.206116 | 2_3:+53648514 | Msa0299140:CDS |
| ATATGTATATCTAATCATTT+TGG | 0.219595 | 2_3:+53650599 | Msa0299140:three_prime_UTR |
| GCTTGATGAAATAACATTAA+AGG | 0.226179 | 2_3:+53649118 | Msa0299140:CDS |
| TTGTTCTGTCTCTTAGCTTA+TGG | 0.267188 | 2_3:+53650490 | Msa0299140:three_prime_UTR |
| CTTTCAATATCCATGCTTCT+TGG | 0.273803 | 2_3:+53649375 | Msa0299140:CDS |
| ATAACAACATTTAATCATTC+TGG | 0.294548 | 2_3:+53650147 | Msa0299140:three_prime_UTR |
| TTTAATGTGCATTCAAGTTC+AGG | 0.301144 | 2_3:+53649973 | Msa0299140:CDS |
| AAGATGATAAGCATTGTTAT+AGG | 0.308241 | 2_3:-53648006 | None:intergenic |
| CCTCGCTAACCAAGGAATAT+TGG | 0.325308 | 2_3:+53648544 | Msa0299140:CDS |
| AAGTAAGGAATGAAAGAAAA+AGG | 0.337620 | 2_3:-53649080 | None:intergenic |
| TTTATTTACATATGAACAAT+TGG | 0.357614 | 2_3:-53649407 | None:intergenic |
| AGAATGGAAGCACTTGTCTT+AGG | 0.365894 | 2_3:+53649026 | Msa0299140:CDS |
| GTACTCTGCTACTGATGTTC+AGG | 0.368096 | 2_3:+53648841 | Msa0299140:CDS |
| ATTATATTGAAGTCACAAAA+AGG | 0.370173 | 2_3:+53649164 | Msa0299140:CDS |
| AGGAACATGGAAGAAAATAT+TGG | 0.380385 | 2_3:+53650366 | Msa0299140:three_prime_UTR |
| AGTAATTTAGTGGAGGGATA+TGG | 0.382669 | 2_3:-53648166 | None:intergenic |
| CATCAAACTCATTTGATTTG+AGG | 0.384576 | 2_3:-53648196 | None:intergenic |
| CACAAATGGATCAAAATTGC+AGG | 0.385190 | 2_3:-53648489 | None:intergenic |
| CTTACTTCACAAATTTGTTT+AGG | 0.391668 | 2_3:+53649096 | Msa0299140:CDS |
| AGATGATAAGCATTGTTATA+GGG | 0.399065 | 2_3:-53648005 | None:intergenic |
| CAGCATTAATCATTCTTGTA+TGG | 0.411119 | 2_3:-53650171 | None:intergenic |
| TTTCAATATCCATGCTTCTT+GGG | 0.414331 | 2_3:+53649376 | Msa0299140:CDS |
| CTAAACAAATTTGTGAAGTA+AGG | 0.421385 | 2_3:-53649095 | None:intergenic |
| AGTTTGTTTGCCCATGGCTT+TGG | 0.421863 | 2_3:-53648770 | None:intergenic |
| AAAGAGGAGTGATAAAGAAA+AGG | 0.429027 | 2_3:-53647977 | None:intergenic |
| CAAATGAATAATAGTATAGT+AGG | 0.442546 | 2_3:+53650513 | Msa0299140:three_prime_UTR |
| ATTACTGCAGGAAAGTGTTA+TGG | 0.446640 | 2_3:+53649900 | Msa0299140:intron |
| TATTAGGCTCTTATGAATCA+TGG | 0.448343 | 2_3:+53648966 | Msa0299140:intron |
| GATGAGGCAGCAACTATAGA+TGG | 0.457339 | 2_3:-53649322 | None:intergenic |
| GAATCAGATGAAAGCTATGT+AGG | 0.472044 | 2_3:-53647926 | None:intergenic |
| AAACATCTTCACAAGTAGTA+AGG | 0.481341 | 2_3:-53648118 | None:intergenic |
| GCAAGTAGTTTGTTTGCCCA+TGG | 0.487774 | 2_3:-53648776 | None:intergenic |
| GATCCAAATAGTTGATAGCT+AGG | 0.490726 | 2_3:-53648517 | None:intergenic |
| AAGAGAAGCATTTCAAAAGA+AGG | 0.492011 | 2_3:+53650085 | Msa0299140:CDS |
| GATACAAGATATAGCTAAAG+AGG | 0.498666 | 2_3:+53649936 | Msa0299140:CDS |
| CAAGAAGCATGGATATTGAA+AGG | 0.504707 | 2_3:-53649374 | None:intergenic |
| TTTCATCTCTTTGATCTCAC+AGG | 0.506071 | 2_3:+53648235 | Msa0299140:CDS |
| ATAGCTAGGTAAGTCACAAA+TGG | 0.506427 | 2_3:-53648503 | None:intergenic |
| TAATAGTATAGTAGGAGTGA+AGG | 0.507559 | 2_3:+53650521 | Msa0299140:three_prime_UTR |
| TACATCTGCTGATTGTGAAA+AGG | 0.508084 | 2_3:+53650346 | Msa0299140:three_prime_UTR |
| AATCAGATGAAAGCTATGTA+GGG | 0.509072 | 2_3:-53647925 | None:intergenic |
| TTTGAAAGTAATTTAGTGGA+GGG | 0.521266 | 2_3:-53648172 | None:intergenic |
| ATGAGCAACATTGGTTCCGT+TGG | 0.521294 | 2_3:-53650049 | None:intergenic |
| AAGAAGCATGGATATTGAAA+GGG | 0.521809 | 2_3:-53649373 | None:intergenic |
| CATAGTAGTATGAGCAACAT+TGG | 0.534202 | 2_3:-53650058 | None:intergenic |
| GATATTATTCCCAAGAAGCA+TGG | 0.534390 | 2_3:-53649385 | None:intergenic |
| CTTCACAAGTAGTAAGGTCA+TGG | 0.537643 | 2_3:-53648112 | None:intergenic |
| TTGTTATAGGGAGAGAAAAG+AGG | 0.545239 | 2_3:-53647993 | None:intergenic |
| TTGTATTGTCTGATTTGTAG+TGG | 0.545844 | 2_3:+53650463 | Msa0299140:three_prime_UTR |
| TGAAGCATAGAGAAGGGATG+AGG | 0.552728 | 2_3:-53649338 | None:intergenic |
| TCCATGGATGTGTGAATATG+TGG | 0.564180 | 2_3:-53648059 | None:intergenic |
| CTTATGAATCATGGTGATGG+TGG | 0.566485 | 2_3:+53648975 | Msa0299140:CDS |
| CCAATATTCCTTGGTTAGCG+AGG | 0.574453 | 2_3:-53648544 | None:intergenic |
| TGTAACAGCAACCAAAGCCA+TGG | 0.575586 | 2_3:+53648759 | Msa0299140:intron |
| TTGTCTTAGGAGCACTACAT+TGG | 0.578863 | 2_3:+53649039 | Msa0299140:CDS |
| TCCACATATTCACACATCCA+TGG | 0.579979 | 2_3:+53648058 | Msa0299140:exon |
| ACTCATGTGAAGCATAGAGA+AGG | 0.592114 | 2_3:-53649345 | None:intergenic |
| ACTTGAATGCACATTAAACA+TGG | 0.595158 | 2_3:-53649968 | None:intergenic |
| ATAATAGGAAGAGATAGTGA+TGG | 0.609927 | 2_3:+53650238 | Msa0299140:three_prime_UTR |
| GATCGCTTCCTCGCTAACCA+AGG | 0.614318 | 2_3:+53648536 | Msa0299140:CDS |
| CTCATGTGAAGCATAGAGAA+GGG | 0.619559 | 2_3:-53649344 | None:intergenic |
| GGTCATGGAAATATTCAAGA+GGG | 0.626065 | 2_3:-53648097 | None:intergenic |
| GCTGATTGTGAAAAGGAACA+TGG | 0.627395 | 2_3:+53650353 | Msa0299140:three_prime_UTR |
| GTAACAGCAACCAAAGCCAT+GGG | 0.635375 | 2_3:+53648760 | Msa0299140:intron |
| GCATTCAAGTTCAGGTACAC+CGG | 0.638614 | 2_3:+53649981 | Msa0299140:CDS |
| AGGTCATGGAAATATTCAAG+AGG | 0.642540 | 2_3:-53648098 | None:intergenic |
| ATCAGATGAAAGCTATGTAG+GGG | 0.642939 | 2_3:-53647924 | None:intergenic |
| GCTCTTATGAATCATGGTGA+TGG | 0.645607 | 2_3:+53648972 | Msa0299140:CDS |
| GATGAAATCACTTCTAACTG+AGG | 0.646020 | 2_3:-53648219 | None:intergenic |
| GGATATGGTCAGATTCAATG+AGG | 0.656053 | 2_3:-53648151 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATGTATAAATTTTGTT+AGG | + | chr2_3:53649512-53649531 | Msa0299140:intron | 10.0% |
| !!! | ATAATGTATAAATTTTGTTA+GGG | + | chr2_3:53649513-53649532 | Msa0299140:intron | 10.0% |
| !!! | AAGAATAACAATTTTTAATG+TGG | + | chr2_3:53648442-53648461 | Msa0299140:intron | 15.0% |
| !!! | AGAATAACAATTTTTAATGT+GGG | + | chr2_3:53648443-53648462 | Msa0299140:intron | 15.0% |
| !! | ATCTTATTAAACAACATTAT+TGG | + | chr2_3:53648591-53648610 | Msa0299140:intron | 15.0% |
| !!! | TTAATAATTTTTTACCTATG+AGG | - | chr2_3:53648881-53648900 | None:intergenic | 15.0% |
| !! | AATATCTCTTATAAAAACTT+TGG | - | chr2_3:53648913-53648932 | None:intergenic | 15.0% |
| !!! | GTATTTTACTTATTGATATT+AGG | + | chr2_3:53648950-53648969 | Msa0299140:intron | 15.0% |
| !! | TTTATTTACATATGAACAAT+TGG | - | chr2_3:53649410-53649429 | None:intergenic | 15.0% |
| !! | GAAAAAAAAGATACAATAAT+AGG | + | chr2_3:53650223-53650242 | Msa0299140:three_prime_UTR | 15.0% |
| !!! | ATATGTATATCTAATCATTT+TGG | + | chr2_3:53650599-53650618 | Msa0299140:three_prime_UTR | 15.0% |
| !!! | ACATTTTTTTGTCAAAATCA+CGG | + | chr2_3:53648364-53648383 | Msa0299140:intron | 20.0% |
| !!! | CATTTTAATTTAGATCTCAA+GGG | - | chr2_3:53648731-53648750 | None:intergenic | 20.0% |
| !! | CTTGAGATCTAAATTAAAAT+GGG | + | chr2_3:53648730-53648749 | Msa0299140:intron | 20.0% |
| !! | TAAAAAAAACTTTACCTCAT+AGG | + | chr2_3:53648864-53648883 | Msa0299140:intron | 20.0% |
| !! | ATTATATTGAAGTCACAAAA+AGG | + | chr2_3:53649164-53649183 | Msa0299140:CDS | 20.0% |
| !!! | TTTTGTTTTTTCAGATGTAA+AGG | + | chr2_3:53649285-53649304 | Msa0299140:intron | 20.0% |
| !! | TTTGCCAATTTATAACATTA+AGG | + | chr2_3:53649597-53649616 | Msa0299140:intron | 20.0% |
| !! | TAGTCCTTAATGTTATAAAT+TGG | - | chr2_3:53649604-53649623 | None:intergenic | 20.0% |
| !! | TTGAAATATCGAGTTTAATA+TGG | + | chr2_3:53649761-53649780 | Msa0299140:intron | 20.0% |
| !! | ATAACAACATTTAATCATTC+TGG | + | chr2_3:53650147-53650166 | Msa0299140:three_prime_UTR | 20.0% |
| !! | ACTGAACAAAAAAAAAGTTA+AGG | + | chr2_3:53650199-53650218 | Msa0299140:three_prime_UTR | 20.0% |
| !! | TTAATGAGAATGTGAAAAAA+AGG | + | chr2_3:53650263-53650282 | Msa0299140:three_prime_UTR | 20.0% |
| !! | CAAATGAATAATAGTATAGT+AGG | + | chr2_3:53650513-53650532 | Msa0299140:three_prime_UTR | 20.0% |
| !! | AGATGATAAGCATTGTTATA+GGG | - | chr2_3:53648008-53648027 | None:intergenic | 25.0% |
| !! | AAGATGATAAGCATTGTTAT+AGG | - | chr2_3:53648009-53648028 | None:intergenic | 25.0% |
| ! | TTTGAAAGTAATTTAGTGGA+GGG | - | chr2_3:53648175-53648194 | None:intergenic | 25.0% |
| !!! | TTTTGAAAGTAATTTAGTGG+AGG | - | chr2_3:53648176-53648195 | None:intergenic | 25.0% |
| !!! | AGGTTTTGAAAGTAATTTAG+TGG | - | chr2_3:53648179-53648198 | None:intergenic | 25.0% |
| !! | ATTTTCTTACCAATATTCCT+TGG | - | chr2_3:53648556-53648575 | None:intergenic | 25.0% |
| ! | TTGTTTAATAAGATTGAGCA+TGG | - | chr2_3:53648585-53648604 | None:intergenic | 25.0% |
| ! | TTAAACAACATTATTGGACT+TGG | + | chr2_3:53648597-53648616 | Msa0299140:intron | 25.0% |
| ! | CACTTTCTTTAATAATGCTT+AGG | - | chr2_3:53648684-53648703 | None:intergenic | 25.0% |
| ! | CTAAGCATTATTAAAGAAAG+TGG | + | chr2_3:53648682-53648701 | Msa0299140:intron | 25.0% |
| !!! | CCATTTTAATTTAGATCTCA+AGG | - | chr2_3:53648732-53648751 | None:intergenic | 25.0% |
| ! | CCTTGAGATCTAAATTAAAA+TGG | + | chr2_3:53648729-53648748 | Msa0299140:intron | 25.0% |
| ! | GACACAAACAATAAAAAGAA+TGG | + | chr2_3:53649010-53649029 | Msa0299140:CDS | 25.0% |
| ! | AAGTAAGGAATGAAAGAAAA+AGG | - | chr2_3:53649083-53649102 | None:intergenic | 25.0% |
| ! | CTAAACAAATTTGTGAAGTA+AGG | - | chr2_3:53649098-53649117 | None:intergenic | 25.0% |
| !! | CTTACTTCACAAATTTGTTT+AGG | + | chr2_3:53649096-53649115 | Msa0299140:CDS | 25.0% |
| ! | GCTTGATGAAATAACATTAA+AGG | + | chr2_3:53649118-53649137 | Msa0299140:CDS | 25.0% |
| !!! | TTTTTCAGATGTAAAGGTTA+TGG | + | chr2_3:53649291-53649310 | Msa0299140:intron | 25.0% |
| ! | CAAAATGTAAGAGACTAAAA+GGG | - | chr2_3:53649551-53649570 | None:intergenic | 25.0% |
| ! | ACAAAATGTAAGAGACTAAA+AGG | - | chr2_3:53649552-53649571 | None:intergenic | 25.0% |
| ! | TATAAATTGGCAAACGATTA+AGG | - | chr2_3:53649591-53649610 | None:intergenic | 25.0% |
| ! | AAAAAAGGAAATTTGATCCA+TGG | + | chr2_3:53650278-53650297 | Msa0299140:three_prime_UTR | 25.0% |
| AATCAGATGAAAGCTATGTA+GGG | - | chr2_3:53647928-53647947 | None:intergenic | 30.0% | |
| AAAGAGGAGTGATAAAGAAA+AGG | - | chr2_3:53647980-53647999 | None:intergenic | 30.0% | |
| ! | AATATTCAAGAGGGTTTTCA+AGG | - | chr2_3:53648091-53648110 | None:intergenic | 30.0% |
| AAACATCTTCACAAGTAGTA+AGG | - | chr2_3:53648121-53648140 | None:intergenic | 30.0% | |
| !! | CATCAAACTCATTTGATTTG+AGG | - | chr2_3:53648199-53648218 | None:intergenic | 30.0% |
| AACATTCTCATGTGTATGTT+TGG | + | chr2_3:53648284-53648303 | Msa0299140:intron | 30.0% | |
| TTACCTAGCTATCAACTATT+TGG | + | chr2_3:53648514-53648533 | Msa0299140:CDS | 30.0% | |
| TATTAGGCTCTTATGAATCA+TGG | + | chr2_3:53648966-53648985 | Msa0299140:intron | 30.0% | |
| ! | AATGAAAGAAAAAGGTGTGA+TGG | - | chr2_3:53649075-53649094 | None:intergenic | 30.0% |
| ! | AAGAAGCATGGATATTGAAA+GGG | - | chr2_3:53649376-53649395 | None:intergenic | 30.0% |
| TTTCAATATCCATGCTTCTT+GGG | + | chr2_3:53649376-53649395 | Msa0299140:CDS | 30.0% | |
| AGTTGTGAACATAGATTGTA+TGG | + | chr2_3:53649677-53649696 | Msa0299140:intron | 30.0% | |
| GTTGTGAACATAGATTGTAT+GGG | + | chr2_3:53649678-53649697 | Msa0299140:intron | 30.0% | |
| TTGTGAACATAGATTGTATG+GGG | + | chr2_3:53649679-53649698 | Msa0299140:intron | 30.0% | |
| GTCGTTTAATTAAGATTGGA+TGG | - | chr2_3:53649788-53649807 | None:intergenic | 30.0% | |
| GTTGGTCGTTTAATTAAGAT+TGG | - | chr2_3:53649792-53649811 | None:intergenic | 30.0% | |
| ! | ATGTTTTGTATCATTACTGC+AGG | + | chr2_3:53649888-53649907 | Msa0299140:intron | 30.0% |
| GATACAAGATATAGCTAAAG+AGG | + | chr2_3:53649936-53649955 | Msa0299140:CDS | 30.0% | |
| ACTTGAATGCACATTAAACA+TGG | - | chr2_3:53649971-53649990 | None:intergenic | 30.0% | |
| ! | TTTAATGTGCATTCAAGTTC+AGG | + | chr2_3:53649973-53649992 | Msa0299140:CDS | 30.0% |
| ! | AGACGAAAATTTTCTAAGCT+TGG | + | chr2_3:53650014-53650033 | Msa0299140:CDS | 30.0% |
| TTGGAAAGTGAAAAAACCAA+CGG | + | chr2_3:53650033-53650052 | Msa0299140:CDS | 30.0% | |
| !! | AAGAGAAGCATTTCAAAAGA+AGG | + | chr2_3:53650085-53650104 | Msa0299140:CDS | 30.0% |
| CAGCATTAATCATTCTTGTA+TGG | - | chr2_3:53650174-53650193 | None:intergenic | 30.0% | |
| ATAATAGGAAGAGATAGTGA+TGG | + | chr2_3:53650238-53650257 | Msa0299140:three_prime_UTR | 30.0% | |
| AGGAACATGGAAGAAAATAT+TGG | + | chr2_3:53650366-53650385 | Msa0299140:three_prime_UTR | 30.0% | |
| ! | TTGTATTGTCTGATTTGTAG+TGG | + | chr2_3:53650463-53650482 | Msa0299140:three_prime_UTR | 30.0% |
| TAATAGTATAGTAGGAGTGA+AGG | + | chr2_3:53650521-53650540 | Msa0299140:three_prime_UTR | 30.0% | |
| ! | AGTGAAGGAAGAAATTTTGT+TGG | + | chr2_3:53650536-53650555 | Msa0299140:three_prime_UTR | 30.0% |
| ! | AAGGAAGAAATTTTGTTGGA+AGG | + | chr2_3:53650540-53650559 | Msa0299140:three_prime_UTR | 30.0% |
| ATCAGATGAAAGCTATGTAG+GGG | - | chr2_3:53647927-53647946 | None:intergenic | 35.0% | |
| GAATCAGATGAAAGCTATGT+AGG | - | chr2_3:53647929-53647948 | None:intergenic | 35.0% | |
| TTGTTATAGGGAGAGAAAAG+AGG | - | chr2_3:53647996-53648015 | None:intergenic | 35.0% | |
| GGTCATGGAAATATTCAAGA+GGG | - | chr2_3:53648100-53648119 | None:intergenic | 35.0% | |
| AGGTCATGGAAATATTCAAG+AGG | - | chr2_3:53648101-53648120 | None:intergenic | 35.0% | |
| AGTAATTTAGTGGAGGGATA+TGG | - | chr2_3:53648169-53648188 | None:intergenic | 35.0% | |
| GATGAAATCACTTCTAACTG+AGG | - | chr2_3:53648222-53648241 | None:intergenic | 35.0% | |
| TTTCATCTCTTTGATCTCAC+AGG | + | chr2_3:53648235-53648254 | Msa0299140:CDS | 35.0% | |
| CACAAATGGATCAAAATTGC+AGG | - | chr2_3:53648492-53648511 | None:intergenic | 35.0% | |
| ATAGCTAGGTAAGTCACAAA+TGG | - | chr2_3:53648506-53648525 | None:intergenic | 35.0% | |
| !! | GATCCAAATAGTTGATAGCT+AGG | - | chr2_3:53648520-53648539 | None:intergenic | 35.0% |
| ! | CAAGAAGCATGGATATTGAA+AGG | - | chr2_3:53649377-53649396 | None:intergenic | 35.0% |
| CTTTCAATATCCATGCTTCT+TGG | + | chr2_3:53649375-53649394 | Msa0299140:CDS | 35.0% | |
| GATATTATTCCCAAGAAGCA+TGG | - | chr2_3:53649388-53649407 | None:intergenic | 35.0% | |
| AACATAGATTGTATGGGGTA+AGG | + | chr2_3:53649684-53649703 | Msa0299140:intron | 35.0% | |
| !! | ATTACTGCAGGAAAGTGTTA+TGG | + | chr2_3:53649900-53649919 | Msa0299140:intron | 35.0% |
| ! | TTTTCGTCTAACACATTGAC+CGG | - | chr2_3:53650003-53650022 | None:intergenic | 35.0% |
| CATAGTAGTATGAGCAACAT+TGG | - | chr2_3:53650061-53650080 | None:intergenic | 35.0% | |
| GAAATTTGATCCATGGTTTG+TGG | + | chr2_3:53650285-53650304 | Msa0299140:intron | 35.0% | |
| ! | GTGATTTTATCCACAAACCA+TGG | - | chr2_3:53650298-53650317 | None:intergenic | 35.0% |
| ! | TACATCTGCTGATTGTGAAA+AGG | + | chr2_3:53650346-53650365 | Msa0299140:three_prime_UTR | 35.0% |
| !!! | ATCGTTTTTTCCTATGTGAG+AGG | + | chr2_3:53650396-53650415 | Msa0299140:three_prime_UTR | 35.0% |
| !! | CTTTTTGTTTCCTCTCACAT+AGG | - | chr2_3:53650409-53650428 | None:intergenic | 35.0% |
| TTGTTCTGTCTCTTAGCTTA+TGG | + | chr2_3:53650490-53650509 | Msa0299140:three_prime_UTR | 35.0% | |
| TCCACATATTCACACATCCA+TGG | + | chr2_3:53648058-53648077 | Msa0299140:exon | 40.0% | |
| TCCATGGATGTGTGAATATG+TGG | - | chr2_3:53648062-53648081 | None:intergenic | 40.0% | |
| !! | GTTTTCAAGGTCAAACTCCA+TGG | - | chr2_3:53648078-53648097 | None:intergenic | 40.0% |
| CTTCACAAGTAGTAAGGTCA+TGG | - | chr2_3:53648115-53648134 | None:intergenic | 40.0% | |
| GGATATGGTCAGATTCAATG+AGG | - | chr2_3:53648154-53648173 | None:intergenic | 40.0% | |
| CATGTGTATGTTTGGATTCG+CGG | + | chr2_3:53648292-53648311 | Msa0299140:intron | 40.0% | |
| GCTCTTATGAATCATGGTGA+TGG | + | chr2_3:53648972-53648991 | Msa0299140:CDS | 40.0% | |
| !! | CTTATGAATCATGGTGATGG+TGG | + | chr2_3:53648975-53648994 | Msa0299140:CDS | 40.0% |
| !! | AGAATGGAAGCACTTGTCTT+AGG | + | chr2_3:53649026-53649045 | Msa0299140:CDS | 40.0% |
| !! | TTGTCTTAGGAGCACTACAT+TGG | + | chr2_3:53649039-53649058 | Msa0299140:CDS | 40.0% |
| CTCATGTGAAGCATAGAGAA+GGG | - | chr2_3:53649347-53649366 | None:intergenic | 40.0% | |
| ACTCATGTGAAGCATAGAGA+AGG | - | chr2_3:53649348-53649367 | None:intergenic | 40.0% | |
| GTAAGAGACTAAAAGGGAGA+GGG | - | chr2_3:53649545-53649564 | None:intergenic | 40.0% | |
| TGTAAGAGACTAAAAGGGAG+AGG | - | chr2_3:53649546-53649565 | None:intergenic | 40.0% | |
| TCACGTACTCGAGATATTGT+TGG | - | chr2_3:53649810-53649829 | None:intergenic | 40.0% | |
| ATATCTCGAGTACGTGAATG+TGG | + | chr2_3:53649813-53649832 | Msa0299140:intron | 40.0% | |
| TATCTCGAGTACGTGAATGT+GGG | + | chr2_3:53649814-53649833 | Msa0299140:intron | 40.0% | |
| GATGTAATGAAAACCGTACG+AGG | - | chr2_3:53650332-53650351 | None:intergenic | 40.0% | |
| GCTGATTGTGAAAAGGAACA+TGG | + | chr2_3:53650353-53650372 | Msa0299140:three_prime_UTR | 40.0% | |
| CCAATATTCCTTGGTTAGCG+AGG | - | chr2_3:53648547-53648566 | None:intergenic | 45.0% | |
| CCTCGCTAACCAAGGAATAT+TGG | + | chr2_3:53648544-53648563 | Msa0299140:CDS | 45.0% | |
| TGTAACAGCAACCAAAGCCA+TGG | + | chr2_3:53648759-53648778 | Msa0299140:intron | 45.0% | |
| GTAACAGCAACCAAAGCCAT+GGG | + | chr2_3:53648760-53648779 | Msa0299140:intron | 45.0% | |
| ! | AGTTTGTTTGCCCATGGCTT+TGG | - | chr2_3:53648773-53648792 | None:intergenic | 45.0% |
| !! | GCAAGTAGTTTGTTTGCCCA+TGG | - | chr2_3:53648779-53648798 | None:intergenic | 45.0% |
| GTACTCTGCTACTGATGTTC+AGG | + | chr2_3:53648841-53648860 | Msa0299140:CDS | 45.0% | |
| GATGAGGCAGCAACTATAGA+TGG | - | chr2_3:53649325-53649344 | None:intergenic | 45.0% | |
| TGAAGCATAGAGAAGGGATG+AGG | - | chr2_3:53649341-53649360 | None:intergenic | 45.0% | |
| CATTCATGCAGTCACGACAT+TGG | + | chr2_3:53649715-53649734 | Msa0299140:intron | 45.0% | |
| ATCTCGAGTACGTGAATGTG+GGG | + | chr2_3:53649815-53649834 | Msa0299140:intron | 45.0% | |
| AAACCGATACCTGTGGGATA+CGG | - | chr2_3:53649844-53649863 | None:intergenic | 45.0% | |
| ! | GCATTCAAGTTCAGGTACAC+CGG | + | chr2_3:53649981-53650000 | Msa0299140:CDS | 45.0% |
| !! | ATGAGCAACATTGGTTCCGT+TGG | - | chr2_3:53650052-53650071 | None:intergenic | 45.0% |
| ACTGTAACGTGATCCTCGTA+CGG | + | chr2_3:53650316-53650335 | Msa0299140:intron | 45.0% | |
| !!! | ATATTAATTTTTTTTTAAGA+TGG | + | chr2_3:53648928-53648947 | Msa0299140:intron | 5.0% |
| CATGCAGTCACGACATTGGA+TGG | + | chr2_3:53649719-53649738 | Msa0299140:intron | 50.0% | |
| TCTCGAGTACGTGAATGTGG+GGG | + | chr2_3:53649816-53649835 | Msa0299140:intron | 50.0% | |
| GATCCGTATCCCACAGGTAT+CGG | + | chr2_3:53649838-53649857 | Msa0299140:intron | 50.0% | |
| !! | TCCCACAGGTATCGGTTTCT+AGG | + | chr2_3:53649846-53649865 | Msa0299140:intron | 50.0% |
| CCCTAGAAACCGATACCTGT+GGG | - | chr2_3:53649850-53649869 | None:intergenic | 50.0% | |
| !! | CCCACAGGTATCGGTTTCTA+GGG | + | chr2_3:53649847-53649866 | Msa0299140:intron | 50.0% |
| GATCGCTTCCTCGCTAACCA+AGG | + | chr2_3:53648536-53648555 | Msa0299140:CDS | 55.0% | |
| GCCCTAGAAACCGATACCTG+TGG | - | chr2_3:53649851-53649870 | None:intergenic | 55.0% | |
| GTGGGGGATCCGTATCCCAC+AGG | + | chr2_3:53649832-53649851 | Msa0299140:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 53647837 | 53650629 | 53647837 | ID=Msa0299140;Name=Msa0299140 |
| chr2_3 | mRNA | 53647837 | 53650629 | 53647837 | ID=Msa0299140-mRNA-1;Parent=Msa0299140;Name=Msa0299140-mRNA-1;_AED=0.20;_eAED=0.20;_QI=240|1|1|1|0.83|0.71|7|479|302 |
| chr2_3 | exon | 53647837 | 53648256 | 53647837 | ID=Msa0299140-mRNA-1:exon:17200;Parent=Msa0299140-mRNA-1 |
| chr2_3 | exon | 53648485 | 53648565 | 53648485 | ID=Msa0299140-mRNA-1:exon:17201;Parent=Msa0299140-mRNA-1 |
| chr2_3 | exon | 53648767 | 53648862 | 53648767 | ID=Msa0299140-mRNA-1:exon:17202;Parent=Msa0299140-mRNA-1 |
| chr2_3 | exon | 53648972 | 53649185 | 53648972 | ID=Msa0299140-mRNA-1:exon:17203;Parent=Msa0299140-mRNA-1 |
| chr2_3 | exon | 53649299 | 53649429 | 53649299 | ID=Msa0299140-mRNA-1:exon:17204;Parent=Msa0299140-mRNA-1 |
| chr2_3 | exon | 53649910 | 53650299 | 53649910 | ID=Msa0299140-mRNA-1:exon:17205;Parent=Msa0299140-mRNA-1 |
| chr2_3 | exon | 53650334 | 53650629 | 53650334 | ID=Msa0299140-mRNA-1:exon:17206;Parent=Msa0299140-mRNA-1 |
| chr2_3 | five_prime_UTR | 53647837 | 53648076 | 53647837 | ID=Msa0299140-mRNA-1:five_prime_utr;Parent=Msa0299140-mRNA-1 |
| chr2_3 | CDS | 53648077 | 53648256 | 53648077 | ID=Msa0299140-mRNA-1:cds;Parent=Msa0299140-mRNA-1 |
| chr2_3 | CDS | 53648485 | 53648565 | 53648485 | ID=Msa0299140-mRNA-1:cds;Parent=Msa0299140-mRNA-1 |
| chr2_3 | CDS | 53648767 | 53648862 | 53648767 | ID=Msa0299140-mRNA-1:cds;Parent=Msa0299140-mRNA-1 |
| chr2_3 | CDS | 53648972 | 53649185 | 53648972 | ID=Msa0299140-mRNA-1:cds;Parent=Msa0299140-mRNA-1 |
| chr2_3 | CDS | 53649299 | 53649429 | 53649299 | ID=Msa0299140-mRNA-1:cds;Parent=Msa0299140-mRNA-1 |
| chr2_3 | CDS | 53649910 | 53650116 | 53649910 | ID=Msa0299140-mRNA-1:cds;Parent=Msa0299140-mRNA-1 |
| chr2_3 | three_prime_UTR | 53650117 | 53650299 | 53650117 | ID=Msa0299140-mRNA-1:three_prime_utr;Parent=Msa0299140-mRNA-1 |
| chr2_3 | three_prime_UTR | 53650334 | 53650629 | 53650334 | ID=Msa0299140-mRNA-1:three_prime_utr;Parent=Msa0299140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
