Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0337030 | XP_003597084.1 | 97.020 | 302 | 9 | 0 | 1 | 302 | 1 | 302 | 0.0 | 608 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0337030 | sp|Q9ZR04|CCD61_ARATH | 45.397 | 315 | 139 | 10 | 1 | 301 | 1 | 296 | 2.07e-76 | 238 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0182240 | Msa0337030 | 0.811938 | 5.450877e-51 | -8.615850e-47 |
| Msa0261340 | Msa0337030 | 0.849411 | 3.290428e-60 | -8.615850e-47 |
| Msa0299140 | Msa0337030 | 0.844053 | 9.592350e-59 | -8.615850e-47 |
| Msa0337030 | Msa0876550 | 0.802876 | 4.556351e-49 | -8.615850e-47 |
| Msa0337030 | Msa1019470 | 0.808013 | 3.815456e-50 | -8.615850e-47 |
| Msa0337030 | Msa1224930 | 0.809864 | 1.532322e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0337030 | MtrunA17_Chr2g0323361 | 97.020 | 302 | 9 | 0 | 1 | 302 | 1 | 302 | 0.0 | 608 |
| Msa0337030 | MtrunA17_Chr2g0280941 | 41.304 | 276 | 138 | 7 | 1 | 272 | 1 | 256 | 8.79e-65 | 204 |
| Msa0337030 | MtrunA17_Chr5g0412471 | 32.714 | 269 | 167 | 7 | 28 | 290 | 69 | 329 | 6.90e-36 | 132 |
| Msa0337030 | MtrunA17_Chr5g0414271 | 33.333 | 252 | 154 | 4 | 6 | 248 | 27 | 273 | 6.14e-32 | 121 |
| Msa0337030 | MtrunA17_Chr4g0041721 | 32.787 | 244 | 146 | 7 | 36 | 270 | 77 | 311 | 1.84e-31 | 120 |
| Msa0337030 | MtrunA17_Chr3g0133211 | 32.210 | 267 | 162 | 6 | 28 | 283 | 74 | 332 | 3.89e-31 | 119 |
| Msa0337030 | MtrunA17_Chr8g0364521 | 33.636 | 220 | 137 | 3 | 32 | 247 | 75 | 289 | 6.33e-30 | 116 |
| Msa0337030 | MtrunA17_Chr5g0427191 | 28.814 | 295 | 193 | 6 | 19 | 301 | 56 | 345 | 4.39e-29 | 114 |
| Msa0337030 | MtrunA17_Chr4g0053381 | 29.555 | 247 | 158 | 6 | 64 | 301 | 97 | 336 | 2.58e-27 | 109 |
| Msa0337030 | MtrunA17_Chr5g0401271 | 32.474 | 194 | 123 | 3 | 59 | 251 | 113 | 299 | 1.20e-25 | 104 |
| Msa0337030 | MtrunA17_Chr8g0367661 | 26.299 | 308 | 191 | 7 | 19 | 300 | 62 | 359 | 1.45e-24 | 102 |
| Msa0337030 | MtrunA17_Chr3g0134261 | 31.140 | 228 | 138 | 8 | 26 | 244 | 62 | 279 | 6.43e-23 | 97.1 |
| Msa0337030 | MtrunA17_Chr1g0208231 | 28.094 | 299 | 186 | 9 | 19 | 301 | 74 | 359 | 1.70e-21 | 93.6 |
| Msa0337030 | MtrunA17_Chr3g0134781 | 32.663 | 199 | 123 | 5 | 69 | 261 | 87 | 280 | 1.89e-18 | 84.0 |
| Msa0337030 | MtrunA17_Chr4g0054011 | 27.668 | 253 | 169 | 6 | 2 | 251 | 30 | 271 | 2.39e-18 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0337030 | AT4G03270.1 | 45.397 | 315 | 139 | 10 | 1 | 301 | 1 | 296 | 2.10e-77 | 238 |
| Msa0337030 | AT4G03270.2 | 45.079 | 315 | 139 | 11 | 1 | 301 | 1 | 295 | 3.64e-75 | 233 |
| Msa0337030 | AT1G70210.1 | 34.188 | 234 | 133 | 5 | 28 | 250 | 59 | 282 | 2.11e-37 | 136 |
| Msa0337030 | AT5G65420.4 | 39.378 | 193 | 106 | 6 | 28 | 214 | 54 | 241 | 1.82e-34 | 126 |
| Msa0337030 | AT5G65420.1 | 39.378 | 193 | 106 | 6 | 28 | 214 | 54 | 241 | 2.85e-34 | 127 |
| Msa0337030 | AT2G22490.1 | 32.130 | 277 | 159 | 8 | 21 | 280 | 67 | 331 | 1.37e-33 | 126 |
| Msa0337030 | AT5G65420.3 | 37.624 | 202 | 107 | 6 | 28 | 214 | 54 | 251 | 2.75e-33 | 124 |
| Msa0337030 | AT2G22490.2 | 32.014 | 278 | 159 | 9 | 21 | 280 | 67 | 332 | 8.17e-32 | 121 |
| Msa0337030 | AT5G10440.1 | 34.783 | 207 | 123 | 5 | 15 | 215 | 33 | 233 | 1.04e-29 | 114 |
| Msa0337030 | AT5G65420.2 | 38.372 | 172 | 95 | 6 | 28 | 193 | 54 | 220 | 6.25e-28 | 108 |
| Msa0337030 | AT5G10440.2 | 37.662 | 154 | 85 | 4 | 15 | 163 | 33 | 180 | 5.16e-25 | 100 |
| Msa0337030 | AT4G34160.1 | 28.141 | 199 | 138 | 2 | 64 | 261 | 102 | 296 | 5.83e-22 | 95.1 |
| Msa0337030 | AT3G50070.1 | 27.184 | 206 | 144 | 3 | 64 | 268 | 101 | 301 | 1.26e-21 | 94.0 |
| Msa0337030 | AT5G67260.1 | 28.431 | 204 | 139 | 3 | 64 | 264 | 111 | 310 | 1.35e-21 | 94.0 |
| Msa0337030 | AT5G67260.2 | 28.431 | 204 | 139 | 3 | 64 | 264 | 111 | 310 | 3.01e-21 | 93.2 |
| Msa0337030 | AT4G37630.2 | 33.143 | 175 | 101 | 6 | 38 | 204 | 59 | 225 | 1.42e-16 | 78.2 |
| Msa0337030 | AT4G37630.3 | 32.768 | 177 | 101 | 7 | 38 | 204 | 59 | 227 | 5.07e-16 | 76.6 |
| Msa0337030 | AT4G37630.1 | 32.768 | 177 | 101 | 7 | 38 | 204 | 59 | 227 | 1.32e-15 | 76.3 |
Find 70 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACCTAGCTATCAACTATT+TGG | 0.206116 | 2_4:-56671263 | Msa0337030:CDS |
| ATATGTATATCTAATCATTT+TGG | 0.219595 | 2_4:-56669179 | Msa0337030:three_prime_UTR |
| GCTTGATGAAATAACATTAA+AGG | 0.226179 | 2_4:-56670659 | Msa0337030:CDS |
| TTGTTCTGTCTCTTAGCTTA+TGG | 0.267188 | 2_4:-56669288 | Msa0337030:three_prime_UTR |
| CTTTCAATATCCATGCTTCT+TGG | 0.273803 | 2_4:-56670402 | Msa0337030:CDS |
| ATAACAACATTTAATCATTC+TGG | 0.294548 | 2_4:-56669630 | Msa0337030:three_prime_UTR |
| TTTAATGTGCATTCAAGTTC+AGG | 0.301144 | 2_4:-56669804 | Msa0337030:CDS |
| AAGATGATAAGCATTGTTAT+AGG | 0.308241 | 2_4:+56671771 | None:intergenic |
| CCTCGCTAACCAAGGAATAT+TGG | 0.325308 | 2_4:-56671233 | Msa0337030:intron |
| AAGTAAGGAATGAAAGAAAA+AGG | 0.337620 | 2_4:+56670697 | None:intergenic |
| TTTATTTACATATGAACAAT+TGG | 0.357614 | 2_4:+56670370 | None:intergenic |
| AGAATGGAAGCACTTGTCTT+AGG | 0.365894 | 2_4:-56670751 | Msa0337030:CDS |
| GTACTCTGCTACTGATGTTC+AGG | 0.368096 | 2_4:-56670936 | Msa0337030:intron |
| ATTATATTGAAGTCACAAAA+AGG | 0.370173 | 2_4:-56670613 | Msa0337030:intron |
| AGTAATTTAGTGGAGGGATA+TGG | 0.382669 | 2_4:+56671611 | None:intergenic |
| CATCAAACTCATTTGATTTG+AGG | 0.384576 | 2_4:+56671581 | None:intergenic |
| CACAAATGGATCAAAATTGC+AGG | 0.385190 | 2_4:+56671288 | None:intergenic |
| CTTACTTCACAAATTTGTTT+AGG | 0.391668 | 2_4:-56670681 | Msa0337030:CDS |
| AGATGATAAGCATTGTTATA+GGG | 0.399065 | 2_4:+56671772 | None:intergenic |
| CAGCATTAATCATTCTTGTA+TGG | 0.411119 | 2_4:+56669606 | None:intergenic |
| TTTCAATATCCATGCTTCTT+GGG | 0.414331 | 2_4:-56670401 | Msa0337030:CDS |
| CTAAACAAATTTGTGAAGTA+AGG | 0.421385 | 2_4:+56670682 | None:intergenic |
| AGTTTGTTTGCCCATGGCTT+TGG | 0.421863 | 2_4:+56671007 | None:intergenic |
| AAAGAGGAGTGATAAAGAAA+AGG | 0.429027 | 2_4:+56671800 | None:intergenic |
| CAAATGAATAATAGTATAGT+AGG | 0.442546 | 2_4:-56669265 | Msa0337030:three_prime_UTR |
| ATTACTGCAGGAAAGTGTTA+TGG | 0.446640 | 2_4:-56669877 | Msa0337030:intron |
| TATTAGGCTCTTATGAATCA+TGG | 0.448343 | 2_4:-56670811 | Msa0337030:intron |
| GATGAGGCAGCAACTATAGA+TGG | 0.457339 | 2_4:+56670455 | None:intergenic |
| GAATCAGATGAAAGCTATGT+AGG | 0.472044 | 2_4:+56671851 | None:intergenic |
| AAACATCTTCACAAGTAGTA+AGG | 0.481341 | 2_4:+56671659 | None:intergenic |
| GCAAGTAGTTTGTTTGCCCA+TGG | 0.487774 | 2_4:+56671001 | None:intergenic |
| GATCCAAATAGTTGATAGCT+AGG | 0.490726 | 2_4:+56671260 | None:intergenic |
| AAGAGAAGCATTTCAAAAGA+AGG | 0.492011 | 2_4:-56669692 | Msa0337030:CDS |
| GATACAAGATATAGCTAAAG+AGG | 0.498666 | 2_4:-56669841 | Msa0337030:CDS |
| CAAGAAGCATGGATATTGAA+AGG | 0.504707 | 2_4:+56670403 | None:intergenic |
| TTTCATCTCTTTGATCTCAC+AGG | 0.506071 | 2_4:-56671542 | Msa0337030:intron |
| ATAGCTAGGTAAGTCACAAA+TGG | 0.506427 | 2_4:+56671274 | None:intergenic |
| TAATAGTATAGTAGGAGTGA+AGG | 0.507559 | 2_4:-56669257 | Msa0337030:three_prime_UTR |
| TACATCTGCTGATTGTGAAA+AGG | 0.508084 | 2_4:-56669432 | Msa0337030:three_prime_UTR |
| AATCAGATGAAAGCTATGTA+GGG | 0.509072 | 2_4:+56671852 | None:intergenic |
| TTTGAAAGTAATTTAGTGGA+GGG | 0.521266 | 2_4:+56671605 | None:intergenic |
| ATGAGCAACATTGGTTCCGT+TGG | 0.521294 | 2_4:+56669728 | None:intergenic |
| AAGAAGCATGGATATTGAAA+GGG | 0.521809 | 2_4:+56670404 | None:intergenic |
| CATAGTAGTATGAGCAACAT+TGG | 0.534202 | 2_4:+56669719 | None:intergenic |
| GATATTATTCCCAAGAAGCA+TGG | 0.534390 | 2_4:+56670392 | None:intergenic |
| CTTCACAAGTAGTAAGGTCA+TGG | 0.537643 | 2_4:+56671665 | None:intergenic |
| TTGTTATAGGGAGAGAAAAG+AGG | 0.545239 | 2_4:+56671784 | None:intergenic |
| TTGTATTGTCTGATTTGTAG+TGG | 0.545844 | 2_4:-56669315 | Msa0337030:three_prime_UTR |
| TGAAGCATAGAGAAGGGATG+AGG | 0.552728 | 2_4:+56670439 | None:intergenic |
| TCCATGGATGTGTGAATATG+TGG | 0.564180 | 2_4:+56671718 | None:intergenic |
| ATATGTGGAGAAGTTGTTAG+TGG | 0.565619 | 2_4:+56671733 | None:intergenic |
| CTTATGAATCATGGTGATGG+TGG | 0.566485 | 2_4:-56670802 | Msa0337030:CDS |
| CCAATATTCCTTGGTTAGCG+AGG | 0.574453 | 2_4:+56671233 | None:intergenic |
| TGTAACAGCAACCAAAGCCA+TGG | 0.575586 | 2_4:-56671018 | Msa0337030:intron |
| TTGTCTTAGGAGCACTACAT+TGG | 0.578863 | 2_4:-56670738 | Msa0337030:CDS |
| TCCACATATTCACACATCCA+TGG | 0.579979 | 2_4:-56671719 | Msa0337030:exon |
| ACTCATGTGAAGCATAGAGA+AGG | 0.592114 | 2_4:+56670432 | None:intergenic |
| ACTTGAATGCACATTAAACA+TGG | 0.595158 | 2_4:+56669809 | None:intergenic |
| ATAATAGGAAGAGATAGTGA+TGG | 0.609927 | 2_4:-56669540 | Msa0337030:three_prime_UTR |
| GATCGCTTCCTCGCTAACCA+AGG | 0.614318 | 2_4:-56671241 | Msa0337030:CDS |
| GCATTCAAGTTCAGGTACAC+CGG | 0.618773 | 2_4:-56669796 | Msa0337030:CDS |
| CTCATGTGAAGCATAGAGAA+GGG | 0.619559 | 2_4:+56670433 | None:intergenic |
| GCTGATTGTGAAAAGGAACA+TGG | 0.623744 | 2_4:-56669425 | Msa0337030:three_prime_UTR |
| GGTCATGGAAATATTCAAGA+GGG | 0.626065 | 2_4:+56671680 | None:intergenic |
| GTAACAGCAACCAAAGCCAT+GGG | 0.635375 | 2_4:-56671017 | Msa0337030:intron |
| AGGTCATGGAAATATTCAAG+AGG | 0.642540 | 2_4:+56671679 | None:intergenic |
| ATCAGATGAAAGCTATGTAG+GGG | 0.642939 | 2_4:+56671853 | None:intergenic |
| GCTCTTATGAATCATGGTGA+TGG | 0.645607 | 2_4:-56670805 | Msa0337030:CDS |
| GATGAAATCACTTCTAACTG+AGG | 0.646020 | 2_4:+56671558 | None:intergenic |
| GGATATGGTCAGATTCAATG+AGG | 0.656053 | 2_4:+56671626 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATGTATAAATTTTGTT+AGG | - | chr2_4:56670843-56670862 | Msa0337030:intron | 10.0% |
| !!! | ATAATGTATAAATTTTGTTA+GGG | - | chr2_4:56670844-56670863 | Msa0337030:intron | 10.0% |
| !!! | AAGAATAACAATTTTTAATG+TGG | - | chr2_4:56669773-56669792 | Msa0337030:CDS | 15.0% |
| !!! | AGAATAACAATTTTTAATGT+GGG | - | chr2_4:56669774-56669793 | Msa0337030:CDS | 15.0% |
| !! | ATCTTATTAAACAACATTAT+TGG | - | chr2_4:56669922-56669941 | Msa0337030:intron | 15.0% |
| !!! | TTAATAATTTTTTACCTATG+AGG | + | chr2_4:56670212-56670231 | None:intergenic | 15.0% |
| !! | AATATCTCTTATAAAAACTT+TGG | + | chr2_4:56670244-56670263 | None:intergenic | 15.0% |
| !!! | GTATTTTACTTATTGATATT+AGG | - | chr2_4:56670281-56670300 | Msa0337030:intron | 15.0% |
| !! | TTTATTTACATATGAACAAT+TGG | + | chr2_4:56670741-56670760 | None:intergenic | 15.0% |
| !! | GAAAAAAAAGATACAATAAT+AGG | - | chr2_4:56671553-56671572 | Msa0337030:CDS | 15.0% |
| !!! | ATATGTATATCTAATCATTT+TGG | - | chr2_4:56671929-56671948 | Msa0337030:five_prime_UTR | 15.0% |
| !!! | ACATTTTTTTGTCAAAATCA+CGG | - | chr2_4:56669695-56669714 | Msa0337030:CDS | 20.0% |
| !! | CACTTTCTTTAATAATGATT+AGG | + | chr2_4:56670015-56670034 | None:intergenic | 20.0% |
| !! | CTAATCATTATTAAAGAAAG+TGG | - | chr2_4:56670013-56670032 | Msa0337030:intron | 20.0% |
| !!! | CATTTTAATTTAGATCTCAA+GGG | + | chr2_4:56670062-56670081 | None:intergenic | 20.0% |
| !! | CTTGAGATCTAAATTAAAAT+GGG | - | chr2_4:56670061-56670080 | Msa0337030:intron | 20.0% |
| !! | TAAAAAAAACTTTACCTCAT+AGG | - | chr2_4:56670195-56670214 | Msa0337030:intron | 20.0% |
| !! | ATTATATTGAAGTCACAAAA+AGG | - | chr2_4:56670495-56670514 | Msa0337030:intron | 20.0% |
| !!! | TTTTGTTTTTTCAGATGTAA+AGG | - | chr2_4:56670616-56670635 | Msa0337030:CDS | 20.0% |
| !! | TTTGCCAATTTATAACATTA+AGG | - | chr2_4:56670928-56670947 | Msa0337030:intron | 20.0% |
| !! | TAGTCCTTAATGTTATAAAT+TGG | + | chr2_4:56670935-56670954 | None:intergenic | 20.0% |
| !! | TTGAAATATCGAGTTTAATA+TGG | - | chr2_4:56671092-56671111 | Msa0337030:intron | 20.0% |
| !! | ATAACAACATTTAATCATTC+TGG | - | chr2_4:56671478-56671497 | Msa0337030:intron | 20.0% |
| !! | AACTGAACAAAAAAAAGTTA+AGG | - | chr2_4:56671529-56671548 | Msa0337030:intron | 20.0% |
| !! | TTAATGAGAATGTGAAAAAA+AGG | - | chr2_4:56671593-56671612 | Msa0337030:CDS | 20.0% |
| !! | CAAATGAATAATAGTATAGT+AGG | - | chr2_4:56671843-56671862 | Msa0337030:five_prime_UTR | 20.0% |
| !! | AGATGATAAGCATTGTTATA+GGG | + | chr2_4:56669339-56669358 | None:intergenic | 25.0% |
| !! | AAGATGATAAGCATTGTTAT+AGG | + | chr2_4:56669340-56669359 | None:intergenic | 25.0% |
| ! | TTTGAAAGTAATTTAGTGGA+GGG | + | chr2_4:56669506-56669525 | None:intergenic | 25.0% |
| !!! | TTTTGAAAGTAATTTAGTGG+AGG | + | chr2_4:56669507-56669526 | None:intergenic | 25.0% |
| !!! | AGGTTTTGAAAGTAATTTAG+TGG | + | chr2_4:56669510-56669529 | None:intergenic | 25.0% |
| !! | ATTTTCTTACCAATATTCCT+TGG | + | chr2_4:56669887-56669906 | None:intergenic | 25.0% |
| ! | TTGTTTAATAAGATTGAGCA+TGG | + | chr2_4:56669916-56669935 | None:intergenic | 25.0% |
| ! | TTAAACAACATTATTGGACT+TGG | - | chr2_4:56669928-56669947 | Msa0337030:intron | 25.0% |
| !!! | CCATTTTAATTTAGATCTCA+AGG | + | chr2_4:56670063-56670082 | None:intergenic | 25.0% |
| ! | CCTTGAGATCTAAATTAAAA+TGG | - | chr2_4:56670060-56670079 | Msa0337030:intron | 25.0% |
| ! | GACACAAACAATAAAAAGAA+TGG | - | chr2_4:56670341-56670360 | Msa0337030:intron | 25.0% |
| ! | AAGTAAGGAATGAAAGAAAA+AGG | + | chr2_4:56670414-56670433 | None:intergenic | 25.0% |
| ! | CTAAACAAATTTGTGAAGTA+AGG | + | chr2_4:56670429-56670448 | None:intergenic | 25.0% |
| !! | CTTACTTCACAAATTTGTTT+AGG | - | chr2_4:56670427-56670446 | Msa0337030:CDS | 25.0% |
| ! | GCTTGATGAAATAACATTAA+AGG | - | chr2_4:56670449-56670468 | Msa0337030:CDS | 25.0% |
| !!! | TTTTTCAGATGTAAAGGTTA+TGG | - | chr2_4:56670622-56670641 | Msa0337030:CDS | 25.0% |
| ! | CAAAATGTAAGAGACTAAAA+GGG | + | chr2_4:56670882-56670901 | None:intergenic | 25.0% |
| ! | ACAAAATGTAAGAGACTAAA+AGG | + | chr2_4:56670883-56670902 | None:intergenic | 25.0% |
| ! | TATAAATTGGCAAACGATTA+AGG | + | chr2_4:56670922-56670941 | None:intergenic | 25.0% |
| ! | AAAAAAGGAAATTTGATCCA+TGG | - | chr2_4:56671608-56671627 | Msa0337030:CDS | 25.0% |
| ! | AGGAACATGGAAAAAAATAT+TGG | - | chr2_4:56671696-56671715 | Msa0337030:CDS | 25.0% |
| AATCAGATGAAAGCTATGTA+GGG | + | chr2_4:56669259-56669278 | None:intergenic | 30.0% | |
| AAAGAGGAGTGATAAAGAAA+AGG | + | chr2_4:56669311-56669330 | None:intergenic | 30.0% | |
| ! | AATATTCAAGAGGGTTTTCA+AGG | + | chr2_4:56669422-56669441 | None:intergenic | 30.0% |
| AAACATCTTCACAAGTAGTA+AGG | + | chr2_4:56669452-56669471 | None:intergenic | 30.0% | |
| !! | CATCAAACTCATTTGATTTG+AGG | + | chr2_4:56669530-56669549 | None:intergenic | 30.0% |
| TTACCTAGCTATCAACTATT+TGG | - | chr2_4:56669845-56669864 | Msa0337030:CDS | 30.0% | |
| TTAATAAGATTGAGCATGGT+GGG | + | chr2_4:56669912-56669931 | None:intergenic | 30.0% | |
| TTTAATAAGATTGAGCATGG+TGG | + | chr2_4:56669913-56669932 | None:intergenic | 30.0% | |
| TATTAGGCTCTTATGAATCA+TGG | - | chr2_4:56670297-56670316 | Msa0337030:intron | 30.0% | |
| ! | AATGAAAGAAAAAGGTGTGA+TGG | + | chr2_4:56670406-56670425 | None:intergenic | 30.0% |
| ! | AAGAAGCATGGATATTGAAA+GGG | + | chr2_4:56670707-56670726 | None:intergenic | 30.0% |
| TTTCAATATCCATGCTTCTT+GGG | - | chr2_4:56670707-56670726 | Msa0337030:CDS | 30.0% | |
| AGTTGTGAACATAGATTGTA+TGG | - | chr2_4:56671008-56671027 | Msa0337030:CDS | 30.0% | |
| GTTGTGAACATAGATTGTAT+GGG | - | chr2_4:56671009-56671028 | Msa0337030:CDS | 30.0% | |
| TTGTGAACATAGATTGTATG+GGG | - | chr2_4:56671010-56671029 | Msa0337030:CDS | 30.0% | |
| GTCGTTTAATTAAGATTGGA+TGG | + | chr2_4:56671119-56671138 | None:intergenic | 30.0% | |
| GTTGGTCGTTTAATTAAGAT+TGG | + | chr2_4:56671123-56671142 | None:intergenic | 30.0% | |
| ! | ATGTTTTGTATCATTACTGC+AGG | - | chr2_4:56671219-56671238 | Msa0337030:intron | 30.0% |
| GATACAAGATATAGCTAAAG+AGG | - | chr2_4:56671267-56671286 | Msa0337030:CDS | 30.0% | |
| ACTTGAATGCACATTAAACA+TGG | + | chr2_4:56671302-56671321 | None:intergenic | 30.0% | |
| ! | TTTAATGTGCATTCAAGTTC+AGG | - | chr2_4:56671304-56671323 | Msa0337030:intron | 30.0% |
| ! | TTTTCGTCTAACACATTAAC+CGG | + | chr2_4:56671334-56671353 | None:intergenic | 30.0% |
| ! | AGACGAAAATTTTCTAAGCT+TGG | - | chr2_4:56671345-56671364 | Msa0337030:intron | 30.0% |
| TTGGAAAGTGAAAAAACCAA+CGG | - | chr2_4:56671364-56671383 | Msa0337030:intron | 30.0% | |
| !! | AAGAGAAGCATTTCAAAAGA+AGG | - | chr2_4:56671416-56671435 | Msa0337030:intron | 30.0% |
| CAGCATTAATCATTCTTGTA+TGG | + | chr2_4:56671505-56671524 | None:intergenic | 30.0% | |
| ATAATAGGAAGAGATAGTGA+TGG | - | chr2_4:56671568-56671587 | Msa0337030:CDS | 30.0% | |
| ! | TTGTATTGTCTGATTTGTAG+TGG | - | chr2_4:56671793-56671812 | Msa0337030:five_prime_UTR | 30.0% |
| TAATAGTATAGTAGGAGTGA+AGG | - | chr2_4:56671851-56671870 | Msa0337030:five_prime_UTR | 30.0% | |
| ! | AGTGAAGGAAGAAATTTTGT+TGG | - | chr2_4:56671866-56671885 | Msa0337030:five_prime_UTR | 30.0% |
| ! | AAGGAAGAAATTTTGTTGGA+AGG | - | chr2_4:56671870-56671889 | Msa0337030:five_prime_UTR | 30.0% |
| ATCAGATGAAAGCTATGTAG+GGG | + | chr2_4:56669258-56669277 | None:intergenic | 35.0% | |
| GAATCAGATGAAAGCTATGT+AGG | + | chr2_4:56669260-56669279 | None:intergenic | 35.0% | |
| TTGTTATAGGGAGAGAAAAG+AGG | + | chr2_4:56669327-56669346 | None:intergenic | 35.0% | |
| ATATGTGGAGAAGTTGTTAG+TGG | + | chr2_4:56669378-56669397 | None:intergenic | 35.0% | |
| GGTCATGGAAATATTCAAGA+GGG | + | chr2_4:56669431-56669450 | None:intergenic | 35.0% | |
| AGGTCATGGAAATATTCAAG+AGG | + | chr2_4:56669432-56669451 | None:intergenic | 35.0% | |
| AGTAATTTAGTGGAGGGATA+TGG | + | chr2_4:56669500-56669519 | None:intergenic | 35.0% | |
| GATGAAATCACTTCTAACTG+AGG | + | chr2_4:56669553-56669572 | None:intergenic | 35.0% | |
| TTTCATCTCTTTGATCTCAC+AGG | - | chr2_4:56669566-56669585 | Msa0337030:three_prime_UTR | 35.0% | |
| AACATTCCCATGTGTATGTT+TGG | - | chr2_4:56669615-56669634 | Msa0337030:three_prime_UTR | 35.0% | |
| GTGAATCCAAACATACACAT+GGG | + | chr2_4:56669624-56669643 | None:intergenic | 35.0% | |
| CATGTGTATGTTTGGATTCA+CGG | - | chr2_4:56669623-56669642 | Msa0337030:three_prime_UTR | 35.0% | |
| CACAAATGGATCAAAATTGC+AGG | + | chr2_4:56669823-56669842 | None:intergenic | 35.0% | |
| ATAGCTAGGTAAGTCACAAA+TGG | + | chr2_4:56669837-56669856 | None:intergenic | 35.0% | |
| !! | GATCCAAATAGTTGATAGCT+AGG | + | chr2_4:56669851-56669870 | None:intergenic | 35.0% |
| ! | CAAGAAGCATGGATATTGAA+AGG | + | chr2_4:56670708-56670727 | None:intergenic | 35.0% |
| CTTTCAATATCCATGCTTCT+TGG | - | chr2_4:56670706-56670725 | Msa0337030:CDS | 35.0% | |
| GATATTATTCCCAAGAAGCA+TGG | + | chr2_4:56670719-56670738 | None:intergenic | 35.0% | |
| AACATAGATTGTATGGGGTA+AGG | - | chr2_4:56671015-56671034 | Msa0337030:intron | 35.0% | |
| !! | ATTACTGCAGGAAAGTGTTA+TGG | - | chr2_4:56671231-56671250 | Msa0337030:intron | 35.0% |
| CATAGTAGTATGAGCAACAT+TGG | + | chr2_4:56671392-56671411 | None:intergenic | 35.0% | |
| GAAATTTGATCCATGGTTTG+TGG | - | chr2_4:56671615-56671634 | Msa0337030:CDS | 35.0% | |
| ! | GTGATTTTATCCACAAACCA+TGG | + | chr2_4:56671628-56671647 | None:intergenic | 35.0% |
| ! | TACATCTGCTGATTGTGAAA+AGG | - | chr2_4:56671676-56671695 | Msa0337030:CDS | 35.0% |
| !!! | ATCGTTTTTTCCTATGTGAG+AGG | - | chr2_4:56671726-56671745 | Msa0337030:five_prime_UTR | 35.0% |
| !! | CTTTTTGTTTCCTCTCACAT+AGG | + | chr2_4:56671739-56671758 | None:intergenic | 35.0% |
| TTGTTCTGTCTCTTAGCTTA+TGG | - | chr2_4:56671820-56671839 | Msa0337030:five_prime_UTR | 35.0% | |
| TCCACATATTCACACATCCA+TGG | - | chr2_4:56669389-56669408 | Msa0337030:three_prime_UTR | 40.0% | |
| TCCATGGATGTGTGAATATG+TGG | + | chr2_4:56669393-56669412 | None:intergenic | 40.0% | |
| !! | GTTTTCAAGGTCAAACTCCA+TGG | + | chr2_4:56669409-56669428 | None:intergenic | 40.0% |
| CTTCACAAGTAGTAAGGTCA+TGG | + | chr2_4:56669446-56669465 | None:intergenic | 40.0% | |
| GGATATGGTCAGATTCAATG+AGG | + | chr2_4:56669485-56669504 | None:intergenic | 40.0% | |
| CGTGAATCCAAACATACACA+TGG | + | chr2_4:56669625-56669644 | None:intergenic | 40.0% | |
| GCTCTTATGAATCATGGTGA+TGG | - | chr2_4:56670303-56670322 | Msa0337030:intron | 40.0% | |
| !! | CTTATGAATCATGGTGATGG+TGG | - | chr2_4:56670306-56670325 | Msa0337030:intron | 40.0% |
| !! | AGAATGGAAGCACTTGTCTT+AGG | - | chr2_4:56670357-56670376 | Msa0337030:intron | 40.0% |
| !! | TTGTCTTAGGAGCACTACAT+TGG | - | chr2_4:56670370-56670389 | Msa0337030:CDS | 40.0% |
| CTCATGTGAAGCATAGAGAA+GGG | + | chr2_4:56670678-56670697 | None:intergenic | 40.0% | |
| ACTCATGTGAAGCATAGAGA+AGG | + | chr2_4:56670679-56670698 | None:intergenic | 40.0% | |
| GTAAGAGACTAAAAGGGAGA+GGG | + | chr2_4:56670876-56670895 | None:intergenic | 40.0% | |
| TGTAAGAGACTAAAAGGGAG+AGG | + | chr2_4:56670877-56670896 | None:intergenic | 40.0% | |
| TCACGTACTCGAGATATTGT+TGG | + | chr2_4:56671141-56671160 | None:intergenic | 40.0% | |
| ATATCTCGAGTACGTGAATG+TGG | - | chr2_4:56671144-56671163 | Msa0337030:intron | 40.0% | |
| TATCTCGAGTACGTGAATGT+GGG | - | chr2_4:56671145-56671164 | Msa0337030:intron | 40.0% | |
| GATGTAATGAAAACCGTACG+AGG | + | chr2_4:56671662-56671681 | None:intergenic | 40.0% | |
| GCTGATTGTGAAAAGGAACA+TGG | - | chr2_4:56671683-56671702 | Msa0337030:CDS | 40.0% | |
| CCAATATTCCTTGGTTAGCG+AGG | + | chr2_4:56669878-56669897 | None:intergenic | 45.0% | |
| CCTCGCTAACCAAGGAATAT+TGG | - | chr2_4:56669875-56669894 | Msa0337030:intron | 45.0% | |
| TGTAACAGCAACCAAAGCCA+TGG | - | chr2_4:56670090-56670109 | Msa0337030:intron | 45.0% | |
| GTAACAGCAACCAAAGCCAT+GGG | - | chr2_4:56670091-56670110 | Msa0337030:intron | 45.0% | |
| ! | AGTTTGTTTGCCCATGGCTT+TGG | + | chr2_4:56670104-56670123 | None:intergenic | 45.0% |
| !! | GCAAGTAGTTTGTTTGCCCA+TGG | + | chr2_4:56670110-56670129 | None:intergenic | 45.0% |
| GTACTCTGCTACTGATGTTC+AGG | - | chr2_4:56670172-56670191 | Msa0337030:intron | 45.0% | |
| GATGAGGCAGCAACTATAGA+TGG | + | chr2_4:56670656-56670675 | None:intergenic | 45.0% | |
| TGAAGCATAGAGAAGGGATG+AGG | + | chr2_4:56670672-56670691 | None:intergenic | 45.0% | |
| CATTCATGCAGTCACGACAT+TGG | - | chr2_4:56671046-56671065 | Msa0337030:intron | 45.0% | |
| ATCTCGAGTACGTGAATGTG+GGG | - | chr2_4:56671146-56671165 | Msa0337030:intron | 45.0% | |
| AAACCGATACCTGTGGGATA+CGG | + | chr2_4:56671175-56671194 | None:intergenic | 45.0% | |
| ! | GCATTCAAGTTCAGGTACAC+CGG | - | chr2_4:56671312-56671331 | Msa0337030:intron | 45.0% |
| !! | ATGAGCAACATTGGTTCCGT+TGG | + | chr2_4:56671383-56671402 | None:intergenic | 45.0% |
| ACTGTAACGTGATCCTCGTA+CGG | - | chr2_4:56671646-56671665 | Msa0337030:CDS | 45.0% | |
| !!! | ATATTAATTTTTTTTTAAGA+TGG | - | chr2_4:56670259-56670278 | Msa0337030:intron | 5.0% |
| CATGCAGTCACGACATTGGA+TGG | - | chr2_4:56671050-56671069 | Msa0337030:intron | 50.0% | |
| TCTCGAGTACGTGAATGTGG+GGG | - | chr2_4:56671147-56671166 | Msa0337030:intron | 50.0% | |
| GATCCGTATCCCACAGGTAT+CGG | - | chr2_4:56671169-56671188 | Msa0337030:intron | 50.0% | |
| !! | TCCCACAGGTATCGGTTTCT+AGG | - | chr2_4:56671177-56671196 | Msa0337030:intron | 50.0% |
| CCCTAGAAACCGATACCTGT+GGG | + | chr2_4:56671181-56671200 | None:intergenic | 50.0% | |
| !! | CCCACAGGTATCGGTTTCTA+GGG | - | chr2_4:56671178-56671197 | Msa0337030:intron | 50.0% |
| GATCGCTTCCTCGCTAACCA+AGG | - | chr2_4:56669867-56669886 | Msa0337030:CDS | 55.0% | |
| GCCCTAGAAACCGATACCTG+TGG | + | chr2_4:56671182-56671201 | None:intergenic | 55.0% | |
| GTGGGGGATCCGTATCCCAC+AGG | - | chr2_4:56671163-56671182 | Msa0337030:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 56669171 | 56671959 | 56669171 | ID=Msa0337030;Name=Msa0337030 |
| chr2_4 | mRNA | 56669171 | 56671959 | 56669171 | ID=Msa0337030-mRNA-1;Parent=Msa0337030;Name=Msa0337030-mRNA-1;_AED=0.20;_eAED=0.20;_QI=237|1|1|1|0.83|0.71|7|478|302 |
| chr2_4 | exon | 56669171 | 56669466 | 56669171 | ID=Msa0337030-mRNA-1:exon:17297;Parent=Msa0337030-mRNA-1 |
| chr2_4 | exon | 56669501 | 56669889 | 56669501 | ID=Msa0337030-mRNA-1:exon:17296;Parent=Msa0337030-mRNA-1 |
| chr2_4 | exon | 56670370 | 56670500 | 56670370 | ID=Msa0337030-mRNA-1:exon:17295;Parent=Msa0337030-mRNA-1 |
| chr2_4 | exon | 56670614 | 56670827 | 56670614 | ID=Msa0337030-mRNA-1:exon:17294;Parent=Msa0337030-mRNA-1 |
| chr2_4 | exon | 56670937 | 56671032 | 56670937 | ID=Msa0337030-mRNA-1:exon:17293;Parent=Msa0337030-mRNA-1 |
| chr2_4 | exon | 56671234 | 56671314 | 56671234 | ID=Msa0337030-mRNA-1:exon:17292;Parent=Msa0337030-mRNA-1 |
| chr2_4 | exon | 56671543 | 56671959 | 56671543 | ID=Msa0337030-mRNA-1:exon:17291;Parent=Msa0337030-mRNA-1 |
| chr2_4 | five_prime_UTR | 56671723 | 56671959 | 56671723 | ID=Msa0337030-mRNA-1:five_prime_utr;Parent=Msa0337030-mRNA-1 |
| chr2_4 | CDS | 56671543 | 56671722 | 56671543 | ID=Msa0337030-mRNA-1:cds;Parent=Msa0337030-mRNA-1 |
| chr2_4 | CDS | 56671234 | 56671314 | 56671234 | ID=Msa0337030-mRNA-1:cds;Parent=Msa0337030-mRNA-1 |
| chr2_4 | CDS | 56670937 | 56671032 | 56670937 | ID=Msa0337030-mRNA-1:cds;Parent=Msa0337030-mRNA-1 |
| chr2_4 | CDS | 56670614 | 56670827 | 56670614 | ID=Msa0337030-mRNA-1:cds;Parent=Msa0337030-mRNA-1 |
| chr2_4 | CDS | 56670370 | 56670500 | 56670370 | ID=Msa0337030-mRNA-1:cds;Parent=Msa0337030-mRNA-1 |
| chr2_4 | CDS | 56669683 | 56669889 | 56669683 | ID=Msa0337030-mRNA-1:cds;Parent=Msa0337030-mRNA-1 |
| chr2_4 | three_prime_UTR | 56669501 | 56669682 | 56669501 | ID=Msa0337030-mRNA-1:three_prime_utr;Parent=Msa0337030-mRNA-1 |
| chr2_4 | three_prime_UTR | 56669171 | 56669466 | 56669171 | ID=Msa0337030-mRNA-1:three_prime_utr;Parent=Msa0337030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
