AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0299800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0299800 MtrunA17_Chr2g0324301 95.378 238 11 0 67 304 138 375 2.51e-172 482
Msa0299800 MtrunA17_Chr2g0324301 73.171 82 17 1 1 82 1 77 2.34e-23 99.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0299800 AT1G03687.1 66.946 239 76 3 67 304 137 373 8.59e-111 327
Msa0299800 AT1G03687.2 63.429 175 61 3 67 240 137 309 2.40e-73 228

Find 65 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCCTGGAATAAAATTT+TGG 0.174919 2_3:+55020631 Msa0299800:CDS
TGTGCAACTTTGTGCCTTTA+TGG 0.186040 2_3:+55020835 Msa0299800:CDS
CGCTGCTGCTGGCCTGCTCT+TGG 0.224629 2_3:+55025089 Msa0299800:CDS
TGAGAGACCTGCCAGTTTAA+AGG 0.232795 2_3:-55020890 None:intergenic
AGGATCAAGCGAAGTCAATT+TGG 0.238713 2_3:+55024835 Msa0299800:intron
CACATGATTTGTTCATGTTC+AGG 0.250834 2_3:-55020862 None:intergenic
CAGCATTCTTGTTGGGATAA+AGG 0.261224 2_3:-55021208 None:intergenic
TCCCAACAAGAATGCTGTTT+TGG 0.276901 2_3:+55021214 Msa0299800:CDS
GAATCAGTTGAAAATGCTTT+TGG 0.285733 2_3:+55021236 Msa0299800:CDS
ACATCCTCTTTGCTCTTTCC+TGG 0.291974 2_3:+55020618 Msa0299800:CDS
GGATCAAGCGAAGTCAATTT+GGG 0.337508 2_3:+55024836 Msa0299800:intron
CATGTGGAATTCCTTTAAAC+TGG 0.337625 2_3:+55020879 Msa0299800:CDS
TTCAGCTGAAATGGATAAAC+AGG 0.359225 2_3:+55025137 Msa0299800:CDS
GCAATTCAGCAGCAATGTTT+AGG 0.361486 2_3:+55022131 Msa0299800:CDS
TGGCGAATTGGAATTGGAAT+TGG 0.367037 2_3:-55019620 None:intergenic
TGAGAGTGGCGAATTGGAAT+TGG 0.377441 2_3:-55019626 None:intergenic
GAGGTTTAGTTCAGCTGAAA+TGG 0.379797 2_3:+55025128 Msa0299800:CDS
TGTACAGCAGCCGCTGCTGC+TGG 0.394872 2_3:+55025078 Msa0299800:CDS
GCGATTTGGGTGACCATAGC+TGG 0.400102 2_3:-55019733 None:intergenic
GATACTTCATTATTTGCAAC+TGG 0.402551 2_3:-55021266 None:intergenic
CCAACCTTGCCATTCTTGTA+AGG 0.404114 2_3:-55019692 None:intergenic
TCCAAAACAGCATTCTTGTT+GGG 0.416746 2_3:-55021215 None:intergenic
TACAGAGGCTTCAAGTTTCA+AGG 0.419131 2_3:+55025400 Msa0299800:intron
CTTACAAGAATGGCAAGGTT+GGG 0.427117 2_3:+55019693 Msa0299800:CDS
GACAACAGCGTCGTCGTTCA+TGG 0.428853 2_3:-55019668 None:intergenic
AGCAATGTTTAGGCGCCTTC+AGG 0.438148 2_3:+55022141 Msa0299800:CDS
TGTTGTTGAGAGTGGCGAAT+TGG 0.442979 2_3:-55019632 None:intergenic
GGGCAGGCCTCAACCATCTT+GGG 0.460650 2_3:+55025047 Msa0299800:intron
AGGGCAGGCCTCAACCATCT+TGG 0.465462 2_3:+55025046 Msa0299800:intron
AAAGAAAATGGCTACTACAT+TGG 0.467839 2_3:+55019510 None:intergenic
CCTTACAAGAATGGCAAGGT+TGG 0.469429 2_3:+55019692 Msa0299800:CDS
CATTGGTGTCATCAAATCCT+TGG 0.472954 2_3:+55019527 Msa0299800:CDS
CACAAAGAGACGACTTCGAA+TGG 0.476866 2_3:+55025203 Msa0299800:CDS
TTCCAAAACAGCATTCTTGT+TGG 0.476920 2_3:-55021216 None:intergenic
TGGAATTCCTTTAAACTGGC+AGG 0.481223 2_3:+55020883 Msa0299800:CDS
CATGTTCAGGAATGCCATAA+AGG 0.486797 2_3:-55020849 None:intergenic
GTAGGTGGAGCTCCAAGAGC+AGG 0.491772 2_3:-55025101 None:intergenic
TTTGTAGTGCTGGCTTGCTA+TGG 0.497959 2_3:+55020572 Msa0299800:intron
CTCTCACCTGAGTTTATGCA+TGG 0.503816 2_3:-55024904 None:intergenic
TAATGAAGTATCATCAGAAA+AGG 0.511233 2_3:+55021277 Msa0299800:CDS
CAAGAGCAGGCCAGCAGCAG+CGG 0.520561 2_3:-55025088 None:intergenic
TTATGCATGGCAGAAGTACC+AGG 0.524465 2_3:-55024891 None:intergenic
TCTTGTATATCGCTAAATCC+TGG 0.525128 2_3:+55024873 Msa0299800:CDS
CTGTTGTCTCCTTACAAGAA+TGG 0.526241 2_3:+55019683 Msa0299800:CDS
TTACAAGAATGGCAAGGTTG+GGG 0.538692 2_3:+55019694 Msa0299800:CDS
ACAAAGAGACGACTTCGAAT+GGG 0.546696 2_3:+55025204 Msa0299800:CDS
TGGGTGACCATAGCTGGAAC+TGG 0.551282 2_3:-55019727 None:intergenic
AACATCACCAGTTCCAGCTA+TGG 0.553572 2_3:+55019720 Msa0299800:CDS
CTGAACTAAACCTCGGAAGT+AGG 0.573085 2_3:-55025119 None:intergenic
TTGGTTATATATGCATCCCA+AGG 0.580805 2_3:+55020650 Msa0299800:CDS
TGGAGCTCCACCTACTTCCG+AGG 0.587727 2_3:+55025109 Msa0299800:CDS
GTGCGATCCCAAGATGGTTG+AGG 0.588081 2_3:-55025054 None:intergenic
GATTTAGCGATATACAAGAA+AGG 0.591739 2_3:-55024869 None:intergenic
GAAGTCAATTTGGGGAGATG+AGG 0.600051 2_3:+55024845 Msa0299800:CDS
CTGAACATGAACAAATCATG+TGG 0.603947 2_3:+55020863 Msa0299800:CDS
AATTGGAATTGGAATTGTAA+CGG 0.608544 2_3:-55019609 None:intergenic
AACTAAACCTCGGAAGTAGG+TGG 0.612586 2_3:-55025116 None:intergenic
GTCTCCTTACAAGAATGGCA+AGG 0.637136 2_3:+55019688 Msa0299800:CDS
CTTCTGCCATGCATAAACTC+AGG 0.637795 2_3:+55024898 Msa0299800:CDS
TATTCCAGGAAAGAGCAAAG+AGG 0.652194 2_3:-55020622 None:intergenic
ATTTCAGCTGAACTAAACCT+CGG 0.661199 2_3:-55025126 None:intergenic
GATCAAGCGAAGTCAATTTG+GGG 0.667499 2_3:+55024837 Msa0299800:CDS
GTACATGTGCGATCCCAAGA+TGG 0.674168 2_3:-55025060 None:intergenic
AGAGACGACTTCGAATGGGA+AGG 0.693993 2_3:+55025208 Msa0299800:CDS
ATTCAGGAAGAAGTAATGTG+TGG 0.772031 2_3:+55021183 Msa0299800:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTACATTTCTTATATTATTT+TGG - chr2_3:55021062-55021081 None:intergenic 10.0%
!! ATTAATATTATATACTTCAT+AGG - chr2_3:55021798-55021817 None:intergenic 10.0%
!! ATTAAGAAAAAAATATTACT+TGG - chr2_3:55022052-55022071 None:intergenic 10.0%
!!! TTTTTTCAATTAAGATAACA+GGG - chr2_3:55020202-55020221 None:intergenic 15.0%
!!! AATCATTTTATTTTTTCTGA+AGG - chr2_3:55020402-55020421 None:intergenic 15.0%
!! AATATATATGAATTGTGATT+TGG + chr2_3:55020687-55020706 Msa0299800:intron 15.0%
!! AGTAAATACTTTATGAAAAA+TGG - chr2_3:55020739-55020758 None:intergenic 15.0%
!! TAACATTAAATACATGAAAA+TGG - chr2_3:55021755-55021774 None:intergenic 15.0%
!! ATTATATTATATAAGCAACA+CGG + chr2_3:55022900-55022919 Msa0299800:intron 15.0%
!!! TATCATCTGTTTTTTTTTTT+GGG - chr2_3:55023880-55023899 None:intergenic 15.0%
!!! ATATCATCTGTTTTTTTTTT+TGG - chr2_3:55023881-55023900 None:intergenic 15.0%
!!! TTGCTATTGATTAAAATTTT+GGG + chr2_3:55024129-55024148 Msa0299800:intron 15.0%
!! GTTAATAAAGAGAAAATATA+TGG + chr2_3:55024407-55024426 Msa0299800:intron 15.0%
!!! TTGCATGTTTTTAATATTTT+AGG - chr2_3:55024722-55024741 None:intergenic 15.0%
!!! AGTTTCTTAGTTTTGTTTTT+GGG - chr2_3:55019583-55019602 None:intergenic 20.0%
!!! TTTTGTTTTTCTAGAAAACT+CGG + chr2_3:55019842-55019861 Msa0299800:intron 20.0%
!!! ATTGAATTGGTTGATTTTTA+GGG + chr2_3:55019963-55019982 Msa0299800:intron 20.0%
!!! TTTTTCAATTAAGATAACAG+GGG - chr2_3:55020201-55020220 None:intergenic 20.0%
!!! GTTTTTTCAATTAAGATAAC+AGG - chr2_3:55020203-55020222 None:intergenic 20.0%
!! GTAGTATTCGATAAAAATAA+GGG - chr2_3:55020281-55020300 None:intergenic 20.0%
!! TGTAGTATTCGATAAAAATA+AGG - chr2_3:55020282-55020301 None:intergenic 20.0%
!!! ATTTTTTTTTTTTGTAGTGC+TGG + chr2_3:55020562-55020581 Msa0299800:intron 20.0%
!!! TATAACCAAAATTTTATTCC+AGG - chr2_3:55020639-55020658 None:intergenic 20.0%
!! AATTAATGTAAATTGCTTCA+AGG - chr2_3:55021713-55021732 None:intergenic 20.0%
!! CAATTTACATTAATTGAGTT+TGG + chr2_3:55021718-55021737 Msa0299800:intron 20.0%
!!! AACCAAAATTCATTTGTTAT+TGG + chr2_3:55021969-55021988 Msa0299800:intron 20.0%
!!! AGCATTTTATTTTGATTGAT+GGG + chr2_3:55022101-55022120 Msa0299800:CDS 20.0%
!!! AATAAGATTTTATTCTACCT+GGG - chr2_3:55022279-55022298 None:intergenic 20.0%
!!! AACAGCATATTTTTATGTAT+AGG + chr2_3:55022300-55022319 Msa0299800:intron 20.0%
!! AATAATTAAGTATAGTGACT+AGG + chr2_3:55022637-55022656 Msa0299800:intron 20.0%
!! ATAATTAAGTATAGTGACTA+GGG + chr2_3:55022638-55022657 Msa0299800:intron 20.0%
!! TTTGTCAAAAATAAAAACCA+CGG - chr2_3:55023611-55023630 None:intergenic 20.0%
!! TGATATCAATTTAATGACAT+AGG - chr2_3:55023650-55023669 None:intergenic 20.0%
!!! GTTGCTATTGATTAAAATTT+TGG + chr2_3:55024128-55024147 Msa0299800:intron 20.0%
!!! ATTAAAATTTTGGGAGAAAA+TGG + chr2_3:55024138-55024157 Msa0299800:intron 20.0%
!!! TAAGAAAAATGCATCAATTT+TGG + chr2_3:55024234-55024253 Msa0299800:intron 20.0%
!!! ATAATATGCAATTTTGCTAA+AGG + chr2_3:55024618-55024637 Msa0299800:intron 20.0%
!!! GTTCAAGTTTTTAAATTCAA+TGG + chr2_3:55024743-55024762 Msa0299800:intron 20.0%
!!! TATGATATTTTGTTTTCAAC+AGG + chr2_3:55024815-55024834 Msa0299800:intron 20.0%
! GAAAAATGAGAATAGGAAAA+AGG - chr2_3:55019560-55019579 None:intergenic 25.0%
!!! GTTTCTTAGTTTTGTTTTTG+GGG - chr2_3:55019582-55019601 None:intergenic 25.0%
!!! GAGTTTCTTAGTTTTGTTTT+TGG - chr2_3:55019584-55019603 None:intergenic 25.0%
! AATTGGAATTGGAATTGTAA+CGG - chr2_3:55019612-55019631 None:intergenic 25.0%
!!! GATTGAATTGGTTGATTTTT+AGG + chr2_3:55019962-55019981 Msa0299800:intron 25.0%
!!! TTGAATTGGTTGATTTTTAG+GGG + chr2_3:55019964-55019983 Msa0299800:intron 25.0%
!! TCTTTCCTGGAATAAAATTT+TGG + chr2_3:55020631-55020650 Msa0299800:CDS 25.0%
! TTATTATATGTCCAAACCTT+GGG - chr2_3:55020669-55020688 None:intergenic 25.0%
! ATTATTATATGTCCAAACCT+TGG - chr2_3:55020670-55020689 None:intergenic 25.0%
!!! TATGAATTGTGATTTGGTTA+TGG + chr2_3:55020693-55020712 Msa0299800:intron 25.0%
!! ACAATTTTCAGTCACTATTA+TGG + chr2_3:55020920-55020939 Msa0299800:intron 25.0%
! ATTCTATAGTCAACCAAATA+TGG + chr2_3:55021090-55021109 Msa0299800:intron 25.0%
!! TAATGAAGTATCATCAGAAA+AGG + chr2_3:55021277-55021296 Msa0299800:CDS 25.0%
!! ACTAAATTAGACTTGTTCAA+CGG - chr2_3:55021378-55021397 None:intergenic 25.0%
! TGTATAAGTAAGAGAATACA+AGG + chr2_3:55021498-55021517 Msa0299800:intron 25.0%
! GACATATCCTTAAAAAAAAG+AGG + chr2_3:55021527-55021546 Msa0299800:intron 25.0%
!! AGCCAATAACAAATGAATTT+TGG - chr2_3:55021974-55021993 None:intergenic 25.0%
!!! CAGCATTTTATTTTGATTGA+TGG + chr2_3:55022100-55022119 Msa0299800:CDS 25.0%
!! CAATAAGATTTTATTCTACC+TGG - chr2_3:55022280-55022299 None:intergenic 25.0%
! TGATAAAGCAAATGACAATA+CGG + chr2_3:55022450-55022469 Msa0299800:intron 25.0%
! ATAATTAGCGTAATATGAGT+TGG + chr2_3:55022491-55022510 Msa0299800:intron 25.0%
!!! AGTAAGTTGATAAGTTTGTT+AGG + chr2_3:55022531-55022550 Msa0299800:intron 25.0%
! TAAAGATTGCAAATGAATGA+AGG - chr2_3:55022780-55022799 None:intergenic 25.0%
! TTTGCAATCTTTATTCTAGT+TGG + chr2_3:55022787-55022806 Msa0299800:intron 25.0%
! AAGAAAGAATTACCAAAACA+GGG - chr2_3:55022839-55022858 None:intergenic 25.0%
! TAAGAAAGAATTACCAAAAC+AGG - chr2_3:55022840-55022859 None:intergenic 25.0%
!! AAAACACCAAACTACATTTT+AGG + chr2_3:55023421-55023440 Msa0299800:intron 25.0%
!!! TTTGAACAAACTGCTATTTT+CGG + chr2_3:55023806-55023825 Msa0299800:intron 25.0%
!!! TCTGTTTTTTTTTTTGGGAA+AGG - chr2_3:55023875-55023894 None:intergenic 25.0%
! TACAGTGATCATAATCTATA+GGG - chr2_3:55023918-55023937 None:intergenic 25.0%
! TTAAACTATTGTTGCATAAG+AGG - chr2_3:55024286-55024305 None:intergenic 25.0%
! TAGAATCATGTATCAAAAGA+AGG - chr2_3:55024311-55024330 None:intergenic 25.0%
! TTATTAACTACTCACTTTAG+AGG - chr2_3:55024395-55024414 None:intergenic 25.0%
!!! ATCATTGATTTGTTTATCGA+CGG + chr2_3:55024479-55024498 Msa0299800:intron 25.0%
!!! TAATCATGTTTTTGCATCTT+AGG + chr2_3:55024555-55024574 Msa0299800:intron 25.0%
!!! ATATTTTAGGACTATATCTC+AGG - chr2_3:55024709-55024728 None:intergenic 25.0%
! TGCTTTCTTATCTTAGTTAT+TGG + chr2_3:55024974-55024993 Msa0299800:intron 25.0%
!!! CCTCTTGCAATTTTTTAAAT+CGG + chr2_3:55025305-55025324 Msa0299800:intron 25.0%
!!! CTCTTGCAATTTTTTAAATC+GGG + chr2_3:55025306-55025325 Msa0299800:intron 25.0%
! TCTGTAAAAAATTAACATGG+AGG - chr2_3:55025386-55025405 None:intergenic 25.0%
!!! TCCATGTTAATTTTTTACAG+AGG + chr2_3:55025385-55025404 Msa0299800:intron 25.0%
!! TTTTGGGGAAAAATGAGAAT+AGG - chr2_3:55019567-55019586 None:intergenic 30.0%
CTTTAAATCTTCAGCGATTT+GGG - chr2_3:55019749-55019768 None:intergenic 30.0%
TTCGATTCTCAGATGAAATT+TGG + chr2_3:55019784-55019803 Msa0299800:intron 30.0%
AAAGTTACAAGTGAGTATGT+TGG + chr2_3:55019819-55019838 Msa0299800:intron 30.0%
! TTTCTAGAAAACTCGGTATT+CGG + chr2_3:55019849-55019868 Msa0299800:intron 30.0%
TTTGTGTGATGTGATTGAAT+TGG + chr2_3:55019950-55019969 Msa0299800:intron 30.0%
!! GTTGATTTTTAGGGGAATTT+TGG + chr2_3:55019972-55019991 Msa0299800:intron 30.0%
!! ACTTTTTAGTCTTCATATGC+AGG + chr2_3:55020756-55020775 Msa0299800:intron 30.0%
GAAATAGTAGAAACTATGCT+AGG - chr2_3:55020990-55021009 None:intergenic 30.0%
!! ATTTTGGAAGCAGTAAAAGT+CGG - chr2_3:55021046-55021065 None:intergenic 30.0%
TATAGTCAACCAAATATGGA+TGG + chr2_3:55021094-55021113 Msa0299800:intron 30.0%
ATAGTCAACCAAATATGGAT+GGG + chr2_3:55021095-55021114 Msa0299800:intron 30.0%
CATTTATTCCCATCCATATT+TGG - chr2_3:55021106-55021125 None:intergenic 30.0%
! GAATCAGTTGAAAATGCTTT+TGG + chr2_3:55021236-55021255 Msa0299800:CDS 30.0%
GATACTTCATTATTTGCAAC+TGG - chr2_3:55021269-55021288 None:intergenic 30.0%
TTTAGTAGAGTTCAATCTTG+AGG + chr2_3:55021392-55021411 Msa0299800:intron 30.0%
GTAAGAGAATACAAGGATAT+AGG + chr2_3:55021505-55021524 Msa0299800:intron 30.0%
!!! CCTCTATCCTCTTTTTTTTA+AGG - chr2_3:55021537-55021556 None:intergenic 30.0%
CCTTAAAAAAAAGAGGATAG+AGG + chr2_3:55021534-55021553 Msa0299800:intron 30.0%
AAGAAATGAAATTGCACTAC+TGG + chr2_3:55021831-55021850 Msa0299800:intron 30.0%
!! AGATTTTGCTATCTTCCATT+TGG + chr2_3:55022021-55022040 Msa0299800:intron 30.0%
!!! TTATTTTGATTGATGGGACA+TGG + chr2_3:55022107-55022126 Msa0299800:CDS 30.0%
AAATTAACCTACTCCATGAT+TGG + chr2_3:55022243-55022262 Msa0299800:intron 30.0%
! ATGTTTAAAACATCTAGCAC+AGG + chr2_3:55022372-55022391 Msa0299800:intron 30.0%
CACAGGATCTAAATACAATT+TGG + chr2_3:55022389-55022408 Msa0299800:intron 30.0%
! TGTCATTTGCTTTATCACTA+AGG - chr2_3:55022447-55022466 None:intergenic 30.0%
!! AAGTTGATAAGTTTGTTAGG+TGG + chr2_3:55022534-55022553 Msa0299800:intron 30.0%
GTTGTTAAGAGTTGTTAGTT+TGG + chr2_3:55022556-55022575 Msa0299800:intron 30.0%
ATCGAAAGAGAAGATACAAA+AGG - chr2_3:55022736-55022755 None:intergenic 30.0%
GGATTTCTTATTGATGAAGT+GGG - chr2_3:55022759-55022778 None:intergenic 30.0%
AGGATTTCTTATTGATGAAG+TGG - chr2_3:55022760-55022779 None:intergenic 30.0%
!! ATTCTAGTTGGAACTTTTCT+CGG + chr2_3:55022799-55022818 Msa0299800:intron 30.0%
TCTTTCTTATAGCAGAAGAA+AGG + chr2_3:55022851-55022870 Msa0299800:intron 30.0%
! AACACGGATTAAACTAAGAT+GGG + chr2_3:55022916-55022935 Msa0299800:intron 30.0%
! TATTCTGGTCTAGTTTGATT+TGG - chr2_3:55022951-55022970 None:intergenic 30.0%
! TTGTGATGCTATTTGTATTC+TGG - chr2_3:55022966-55022985 None:intergenic 30.0%
TTGTATGCTCTATATTGCTA+TGG - chr2_3:55023016-55023035 None:intergenic 30.0%
GGTTAATTGTAAACCTCAAA+AGG + chr2_3:55023194-55023213 Msa0299800:intron 30.0%
ATTGTAAACCTCAAAAGGTA+AGG + chr2_3:55023199-55023218 Msa0299800:intron 30.0%
! GTAAGGTTGTTCATATTTTC+TGG + chr2_3:55023216-55023235 Msa0299800:intron 30.0%
GATATGCCTAAAATGTAGTT+TGG - chr2_3:55023430-55023449 None:intergenic 30.0%
! AACTACATTTTAGGCATATC+TGG + chr2_3:55023430-55023449 Msa0299800:intron 30.0%
! ACTACATTTTAGGCATATCT+GGG + chr2_3:55023431-55023450 Msa0299800:intron 30.0%
! ATTTTTGACAAAGACAACCA+TGG + chr2_3:55023619-55023638 Msa0299800:intron 30.0%
TTCAAATTCTGCTATGTTAC+AGG - chr2_3:55023792-55023811 None:intergenic 30.0%
AAACAGATGATATCATGTAG+AGG + chr2_3:55023888-55023907 Msa0299800:intron 30.0%
GTACAGTGATCATAATCTAT+AGG - chr2_3:55023919-55023938 None:intergenic 30.0%
TCTTCGAAGTTCAAACATAA+TGG - chr2_3:55024000-55024019 None:intergenic 30.0%
!!! AGTTTGTAAGGAAGCTTTTT+TGG - chr2_3:55024065-55024084 None:intergenic 30.0%
ACAACACTCTACAACATAAT+TGG - chr2_3:55024092-55024111 None:intergenic 30.0%
CAGAACAACAATTATCTTGT+CGG - chr2_3:55024213-55024232 None:intergenic 30.0%
ATTAAATAGAGCAAGAAGTG+AGG - chr2_3:55024539-55024558 None:intergenic 30.0%
! TTTTGCATCTTAGGATGAAA+AGG + chr2_3:55024564-55024583 Msa0299800:intron 30.0%
TCATGTCTAAATGTTGTACA+AGG - chr2_3:55024599-55024618 None:intergenic 30.0%
GATTTAGCGATATACAAGAA+AGG - chr2_3:55024872-55024891 None:intergenic 30.0%
ACTAAGATAAGAAAGCAAGA+AGG - chr2_3:55024971-55024990 None:intergenic 30.0%
TGAAGTCTAATTCCGATTTA+TGG + chr2_3:55025016-55025035 Msa0299800:intron 30.0%
CCGATTTAAAAAATTGCAAG+AGG - chr2_3:55025308-55025327 None:intergenic 30.0%
! GTTGTCACTATTTCTCATTA+GGG - chr2_3:55025342-55025361 None:intergenic 30.0%
! TGTTGTCACTATTTCTCATT+AGG - chr2_3:55025343-55025362 None:intergenic 30.0%
GCCTCTGTAAAAAATTAACA+TGG - chr2_3:55025389-55025408 None:intergenic 30.0%
! GCTTTAAATCTTCAGCGATT+TGG - chr2_3:55019750-55019769 None:intergenic 35.0%
CACCAACATTACTCAATATC+CGG - chr2_3:55019913-55019932 None:intergenic 35.0%
! CTAAAGCCTTATAAGTTGCA+CGG - chr2_3:55020019-55020038 None:intergenic 35.0%
CAAAGGTTATCTTTGTCAGA+AGG + chr2_3:55020103-55020122 Msa0299800:intron 35.0%
!!! TTTTTTCTGAAGGCTCTGTT+TGG - chr2_3:55020392-55020411 None:intergenic 35.0%
CAAATATGCTATGCATGTGT+CGG + chr2_3:55020423-55020442 Msa0299800:intron 35.0%
TTGGTTATATATGCATCCCA+AGG + chr2_3:55020650-55020669 Msa0299800:CDS 35.0%
TATATATGCATCCCAAGGTT+TGG + chr2_3:55020655-55020674 Msa0299800:intron 35.0%
! TTTTTACGACAGAACAACAC+TGG + chr2_3:55020781-55020800 Msa0299800:CDS 35.0%
! AAGCTTTTGTGGCAAGTTTT+TGG + chr2_3:55020805-55020824 Msa0299800:CDS 35.0%
! AGCTTTTGTGGCAAGTTTTT+GGG + chr2_3:55020806-55020825 Msa0299800:CDS 35.0%
!! CACATGATTTGTTCATGTTC+AGG - chr2_3:55020865-55020884 None:intergenic 35.0%
CTGAACATGAACAAATCATG+TGG + chr2_3:55020863-55020882 Msa0299800:CDS 35.0%
CATGTGGAATTCCTTTAAAC+TGG + chr2_3:55020879-55020898 Msa0299800:CDS 35.0%
AAAGTAGTCAGATTCGATCT+TGG + chr2_3:55020955-55020974 Msa0299800:intron 35.0%
CATTACTTCTTCCTGAATCA+AGG - chr2_3:55021181-55021200 None:intergenic 35.0%
ATTCAGGAAGAAGTAATGTG+TGG + chr2_3:55021183-55021202 Msa0299800:intron 35.0%
TCCAAAACAGCATTCTTGTT+GGG - chr2_3:55021218-55021237 None:intergenic 35.0%
TTCCAAAACAGCATTCTTGT+TGG - chr2_3:55021219-55021238 None:intergenic 35.0%
! AGTTGAAAATGCTTTTGGTC+AGG + chr2_3:55021241-55021260 Msa0299800:CDS 35.0%
GGGGTGTATTGTTAAGATAT+AGG + chr2_3:55021433-55021452 Msa0299800:intron 35.0%
TAAGATATAGGACAAGCAGA+AGG + chr2_3:55021445-55021464 Msa0299800:intron 35.0%
! TATTACTTGGTAGCACCAAA+TGG - chr2_3:55022039-55022058 None:intergenic 35.0%
AAAGCAAATGACAATACGGT+AGG + chr2_3:55022454-55022473 Msa0299800:intron 35.0%
! TATTCAAATCTGCCCTGTTT+TGG + chr2_3:55022824-55022843 Msa0299800:intron 35.0%
! CAACACGGATTAAACTAAGA+TGG + chr2_3:55022915-55022934 Msa0299800:intron 35.0%
GCATCACAAGTCAAAACTAA+TGG + chr2_3:55022977-55022996 Msa0299800:intron 35.0%
GCATACAAGTTCAAAATCGT+TGG + chr2_3:55023028-55023047 Msa0299800:intron 35.0%
TCACAGTTACTAAAGAGTGA+AGG + chr2_3:55023072-55023091 Msa0299800:intron 35.0%
AGTTACTAAAGAGTGAAGGA+TGG + chr2_3:55023076-55023095 Msa0299800:intron 35.0%
GTTTGTTTCCTTCATCTTGT+TGG + chr2_3:55023164-55023183 Msa0299800:intron 35.0%
! ATGAACAACCTTACCTTTTG+AGG - chr2_3:55023210-55023229 None:intergenic 35.0%
TTTGCGAGTTCGATTATGTT+GGG + chr2_3:55023239-55023258 Msa0299800:intron 35.0%
CCATCTATAAAGGAGAAAAG+CGG - chr2_3:55023293-55023312 None:intergenic 35.0%
! CGCTTTTCTCCTTTATAGAT+GGG + chr2_3:55023291-55023310 Msa0299800:intron 35.0%
! CTTTATAGATGGGTTCATGT+GGG + chr2_3:55023301-55023320 Msa0299800:intron 35.0%
! CTACATTTTAGGCATATCTG+GGG + chr2_3:55023432-55023451 Msa0299800:intron 35.0%
! TACATTTTAGGCATATCTGG+GGG + chr2_3:55023433-55023452 Msa0299800:intron 35.0%
TTTAACGAGTCTACGCATAA+TGG - chr2_3:55023466-55023485 None:intergenic 35.0%
CCATGCAAGTATATGATTCT+TGG - chr2_3:55023559-55023578 None:intergenic 35.0%
CCAAGAATCATATACTTGCA+TGG + chr2_3:55023556-55023575 Msa0299800:intron 35.0%
TAATGACATAGGTCTAACCA+TGG - chr2_3:55023639-55023658 None:intergenic 35.0%
TGCTCAAATAGCAGATATAG+TGG + chr2_3:55023673-55023692 Msa0299800:intron 35.0%
GCTATTTGACAACACTTGTA+CGG - chr2_3:55023748-55023767 None:intergenic 35.0%
! GTACAAGTGTTGTCAAATAG+CGG + chr2_3:55023747-55023766 Msa0299800:intron 35.0%
TCAACCAGTATTGTCAATCA+CGG - chr2_3:55023836-55023855 None:intergenic 35.0%
ATAATTGGCAGCAGTTTGTA+AGG - chr2_3:55024077-55024096 None:intergenic 35.0%
TTGATACATGATTCTAGCAG+AGG + chr2_3:55024315-55024334 Msa0299800:intron 35.0%
TAGCAGAGGTTTAGATGTTA+TGG + chr2_3:55024329-55024348 Msa0299800:intron 35.0%
! TTAACTACTCACTTTAGAGG+AGG - chr2_3:55024392-55024411 None:intergenic 35.0%
TATGCACAACAAATCATGGA+TGG - chr2_3:55024445-55024464 None:intergenic 35.0%
!! TTGATTTGTTTATCGACGGT+TGG + chr2_3:55024483-55024502 Msa0299800:intron 35.0%
TCAGGTAAAAATATCTCTGC+AGG - chr2_3:55024691-55024710 None:intergenic 35.0%
TCTTGTATATCGCTAAATCC+TGG + chr2_3:55024873-55024892 Msa0299800:CDS 35.0%
TTCCGATTTATGGTATTTCG+AGG + chr2_3:55025026-55025045 Msa0299800:intron 35.0%
TCCGATTTATGGTATTTCGA+GGG + chr2_3:55025027-55025046 Msa0299800:intron 35.0%
ATTTCAGCTGAACTAAACCT+CGG - chr2_3:55025129-55025148 None:intergenic 35.0%
TTCAGCTGAAATGGATAAAC+AGG + chr2_3:55025137-55025156 Msa0299800:CDS 35.0%
!! TTGCCTTACTTTTCGTGTTA+TGG - chr2_3:55025235-55025254 None:intergenic 35.0%
CTAGGTTGTCAGAAAAAACT+TGG - chr2_3:55025281-55025300 None:intergenic 35.0%
AAAATTGCAAGAGGCTTACT+AGG - chr2_3:55025299-55025318 None:intergenic 35.0%
!! CATTGGTGTCATCAAATCCT+TGG + chr2_3:55019527-55019546 Msa0299800:CDS 40.0%
TGGCGAATTGGAATTGGAAT+TGG - chr2_3:55019623-55019642 None:intergenic 40.0%
! GTTGTTGTTGTTGTTGAGAG+TGG - chr2_3:55019643-55019662 None:intergenic 40.0%
CTGTTGTCTCCTTACAAGAA+TGG + chr2_3:55019683-55019702 Msa0299800:CDS 40.0%
CTTACAAGAATGGCAAGGTT+GGG + chr2_3:55019693-55019712 Msa0299800:CDS 40.0%
TTACAAGAATGGCAAGGTTG+GGG + chr2_3:55019694-55019713 Msa0299800:CDS 40.0%
ACTCACTTGTAACTTTCCAC+CGG - chr2_3:55019815-55019834 None:intergenic 40.0%
!!! ATCCTGGATTAGTCGGTTTT+AGG - chr2_3:55019875-55019894 None:intergenic 40.0%
! CAAATAGCTTGTCGTGTACT+TGG + chr2_3:55020077-55020096 Msa0299800:intron 40.0%
AAGTGTCAGTCCTACACAAA+TGG + chr2_3:55020479-55020498 Msa0299800:intron 40.0%
TATTCCAGGAAAGAGCAAAG+AGG - chr2_3:55020625-55020644 None:intergenic 40.0%
! ACAACACTGGAAAGCTTTTG+TGG + chr2_3:55020794-55020813 Msa0299800:CDS 40.0%
! GCTTTTGTGGCAAGTTTTTG+GGG + chr2_3:55020807-55020826 Msa0299800:CDS 40.0%
TGTGCAACTTTGTGCCTTTA+TGG + chr2_3:55020835-55020854 Msa0299800:CDS 40.0%
CATGTTCAGGAATGCCATAA+AGG - chr2_3:55020852-55020871 None:intergenic 40.0%
TGGAATTCCTTTAAACTGGC+AGG + chr2_3:55020883-55020902 Msa0299800:CDS 40.0%
ACGGACACTAGTTGAAATGA+AGG - chr2_3:55021137-55021156 None:intergenic 40.0%
TCAACTAGTGTCCGTTACTT+AGG + chr2_3:55021142-55021161 Msa0299800:intron 40.0%
AAAACCCACGACCTAAGTAA+CGG - chr2_3:55021156-55021175 None:intergenic 40.0%
! GTGGGTTTTTACCTTGATTC+AGG + chr2_3:55021167-55021186 Msa0299800:intron 40.0%
CAGCATTCTTGTTGGGATAA+AGG - chr2_3:55021211-55021230 None:intergenic 40.0%
!! TCCCAACAAGAATGCTGTTT+TGG + chr2_3:55021214-55021233 Msa0299800:CDS 40.0%
AGAGTTCAATCTTGAGGAGA+AGG + chr2_3:55021398-55021417 Msa0299800:intron 40.0%
!! TTGAGGAGAAGGTTGTTTTG+AGG + chr2_3:55021409-55021428 Msa0299800:intron 40.0%
TATTGTGAAGGAGAAACCCT+TGG + chr2_3:55021602-55021621 Msa0299800:intron 40.0%
GAGATATATCTCTCCTCCAA+GGG - chr2_3:55021621-55021640 None:intergenic 40.0%
AGAGATATATCTCTCCTCCA+AGG - chr2_3:55021622-55021641 None:intergenic 40.0%
!! GCTTCAAGGTACATTTTGAC+AGG - chr2_3:55021699-55021718 None:intergenic 40.0%
!! ATACATGCATTGATTGCTGC+AGG - chr2_3:55021881-55021900 None:intergenic 40.0%
TGTATCTCTTGTGAAGTCAG+TGG + chr2_3:55021938-55021957 Msa0299800:intron 40.0%
GCAATTCAGCAGCAATGTTT+AGG + chr2_3:55022131-55022150 Msa0299800:CDS 40.0%
CTAATCACCAATCATGGAGT+AGG - chr2_3:55022253-55022272 None:intergenic 40.0%
! CTACTCCATGATTGGTGATT+AGG + chr2_3:55022251-55022270 Msa0299800:intron 40.0%
AATGACAATACGGTAGGATG+TGG + chr2_3:55022460-55022479 Msa0299800:intron 40.0%
AAGTATTCACATAGCCCTCA+AGG + chr2_3:55022590-55022609 Msa0299800:intron 40.0%
AGTATTCACATAGCCCTCAA+GGG + chr2_3:55022591-55022610 Msa0299800:intron 40.0%
TCTTTCCTTTCTACCCTTGA+GGG - chr2_3:55022607-55022626 None:intergenic 40.0%
ATCTTTCCTTTCTACCCTTG+AGG - chr2_3:55022608-55022627 None:intergenic 40.0%
TCAAGGGTAGAAAGGAAAGA+TGG + chr2_3:55022607-55022626 Msa0299800:intron 40.0%
TGAAAGGAGAATGCTCCTTT+GGG + chr2_3:55022673-55022692 Msa0299800:intron 40.0%
TACTAAAGAGTGAAGGATGG+TGG + chr2_3:55023079-55023098 Msa0299800:intron 40.0%
ACTAAAGAGTGAAGGATGGT+GGG + chr2_3:55023080-55023099 Msa0299800:intron 40.0%
CTTCATCTTGTTGGTCAGTT+GGG + chr2_3:55023173-55023192 Msa0299800:intron 40.0%
GTTTGCGAGTTCGATTATGT+TGG + chr2_3:55023238-55023257 Msa0299800:intron 40.0%
TTCGATTATGTTGGGAGCTA+TGG + chr2_3:55023247-55023266 Msa0299800:intron 40.0%
TCGATTATGTTGGGAGCTAT+GGG + chr2_3:55023248-55023267 Msa0299800:intron 40.0%
!! CCGCTTTTCTCCTTTATAGA+TGG + chr2_3:55023290-55023309 Msa0299800:intron 40.0%
CCACATGAACCCATCTATAA+AGG - chr2_3:55023303-55023322 None:intergenic 40.0%
! CCTTTATAGATGGGTTCATG+TGG + chr2_3:55023300-55023319 Msa0299800:intron 40.0%
!! TCTGTTGAGTTGAACAACTG+AGG + chr2_3:55023336-55023355 Msa0299800:intron 40.0%
ATTGTACGAGTCTATGCAAG+TGG + chr2_3:55023485-55023504 Msa0299800:intron 40.0%
ACTTGAGAATTTGACAACCG+TGG + chr2_3:55023591-55023610 Msa0299800:intron 40.0%
TGATCCGTGATTGACAATAC+TGG + chr2_3:55023829-55023848 Msa0299800:intron 40.0%
TGTATTCTCATTTGCTCCGT+TGG + chr2_3:55023973-55023992 Msa0299800:intron 40.0%
GTATTCTCATTTGCTCCGTT+GGG + chr2_3:55023974-55023993 Msa0299800:intron 40.0%
GTTCAAACATAATGGCCCAA+CGG - chr2_3:55023992-55024011 None:intergenic 40.0%
CGCATATGCACAACAAATCA+TGG - chr2_3:55024449-55024468 None:intergenic 40.0%
TTAGGATGAAAAGGCCTATG+TGG + chr2_3:55024573-55024592 Msa0299800:intron 40.0%
AATGTTGTACAAGGCCACAT+AGG - chr2_3:55024590-55024609 None:intergenic 40.0%
AGGATCAAGCGAAGTCAATT+TGG + chr2_3:55024835-55024854 Msa0299800:intron 40.0%
GGATCAAGCGAAGTCAATTT+GGG + chr2_3:55024836-55024855 Msa0299800:intron 40.0%
GATCAAGCGAAGTCAATTTG+GGG + chr2_3:55024837-55024856 Msa0299800:CDS 40.0%
GCCCTCGAAATACCATAAAT+CGG - chr2_3:55025031-55025050 None:intergenic 40.0%
ATTTATGGTATTTCGAGGGC+AGG + chr2_3:55025031-55025050 Msa0299800:intron 40.0%
! GAGGTTTAGTTCAGCTGAAA+TGG + chr2_3:55025128-55025147 Msa0299800:CDS 40.0%
ACAAAGAGACGACTTCGAAT+GGG + chr2_3:55025204-55025223 Msa0299800:CDS 40.0%
GGTCCATAACACGAAAAGTA+AGG + chr2_3:55025229-55025248 Msa0299800:intron 40.0%
! TACAGAGGCTTCAAGTTTCA+AGG + chr2_3:55025400-55025419 Msa0299800:intron 40.0%
AGGAAAAAGGCTCTTGTCCA+AGG - chr2_3:55019547-55019566 None:intergenic 45.0%
TGAGAGTGGCGAATTGGAAT+TGG - chr2_3:55019629-55019648 None:intergenic 45.0%
TGTTGTTGAGAGTGGCGAAT+TGG - chr2_3:55019635-55019654 None:intergenic 45.0%
GTCTCCTTACAAGAATGGCA+AGG + chr2_3:55019688-55019707 Msa0299800:CDS 45.0%
CCAACCTTGCCATTCTTGTA+AGG - chr2_3:55019695-55019714 None:intergenic 45.0%
CCTTACAAGAATGGCAAGGT+TGG + chr2_3:55019692-55019711 Msa0299800:CDS 45.0%
AACATCACCAGTTCCAGCTA+TGG + chr2_3:55019720-55019739 Msa0299800:CDS 45.0%
!! CCGACTAATCCTGGATTAGT+CGG - chr2_3:55019882-55019901 None:intergenic 45.0%
! CCGACTAATCCAGGATTAGT+CGG + chr2_3:55019879-55019898 Msa0299800:intron 45.0%
!! ATCCAGGATTAGTCGGTTCT+TGG + chr2_3:55019886-55019905 Msa0299800:intron 45.0%
!! TCCAGGATTAGTCGGTTCTT+GGG + chr2_3:55019887-55019906 Msa0299800:intron 45.0%
GGCCGGATATTGAGTAATGT+TGG + chr2_3:55019908-55019927 Msa0299800:intron 45.0%
!! GAAGCACCGTGCAACTTATA+AGG + chr2_3:55020010-55020029 Msa0299800:intron 45.0%
! TGTCGTGTACTTGGTAGCAA+AGG + chr2_3:55020086-55020105 Msa0299800:intron 45.0%
GCAGCAACAACCATTTGTGT+AGG - chr2_3:55020492-55020511 None:intergenic 45.0%
TTGTTGCTGCTGCTGAGTAA+TGG + chr2_3:55020502-55020521 Msa0299800:intron 45.0%
!! TTTGTAGTGCTGGCTTGCTA+TGG + chr2_3:55020572-55020591 Msa0299800:intron 45.0%
ACATCCTCTTTGCTCTTTCC+TGG + chr2_3:55020618-55020637 Msa0299800:CDS 45.0%
TGAGAGACCTGCCAGTTTAA+AGG - chr2_3:55020893-55020912 None:intergenic 45.0%
!!! AGGAGAAGGTTGTTTTGAGG+AGG + chr2_3:55021412-55021431 Msa0299800:intron 45.0%
!!! GGAGAAGGTTGTTTTGAGGA+GGG + chr2_3:55021413-55021432 Msa0299800:intron 45.0%
!!! GAGAAGGTTGTTTTGAGGAG+GGG + chr2_3:55021414-55021433 Msa0299800:intron 45.0%
AGGACAAGCAGAAGGTTGTT+AGG + chr2_3:55021453-55021472 Msa0299800:intron 45.0%
GAGTAGCGACTCTATTGTGA+AGG + chr2_3:55021590-55021609 Msa0299800:intron 45.0%
TTCACCCAGAAGTTACCTGA+AGG - chr2_3:55022159-55022178 None:intergenic 45.0%
TAGTGACTAGGGAATGCTCT+AGG + chr2_3:55022649-55022668 Msa0299800:intron 45.0%
AGTGACTAGGGAATGCTCTA+GGG + chr2_3:55022650-55022669 Msa0299800:intron 45.0%
GTGAAAGGAGAATGCTCCTT+TGG + chr2_3:55022672-55022691 Msa0299800:intron 45.0%
GAAAGGAGAATGCTCCTTTG+GGG + chr2_3:55022674-55022693 Msa0299800:intron 45.0%
AAAGGAGAATGCTCCTTTGG+GGG + chr2_3:55022675-55022694 Msa0299800:intron 45.0%
AGATGATAACCCTGCACACA+AGG - chr2_3:55022704-55022723 None:intergenic 45.0%
AGATTCAACTCGGTAGAGCT+AGG + chr2_3:55023126-55023145 Msa0299800:intron 45.0%
CCAACTGACCAACAAGATGA+AGG - chr2_3:55023175-55023194 None:intergenic 45.0%
CCTTCATCTTGTTGGTCAGT+TGG + chr2_3:55023172-55023191 Msa0299800:intron 45.0%
CGATTATGTTGGGAGCTATG+GGG + chr2_3:55023249-55023268 Msa0299800:intron 45.0%
!! GGTTGATGTTTTGTGCACTG+TGG + chr2_3:55023357-55023376 Msa0299800:intron 45.0%
TAGGCATATCTGGGGGAAAA+TGG + chr2_3:55023440-55023459 Msa0299800:intron 45.0%
! TAATCTTTTCCCAGCTTGCG+AGG - chr2_3:55024263-55024282 None:intergenic 45.0%
GAAGTCAATTTGGGGAGATG+AGG + chr2_3:55024845-55024864 Msa0299800:CDS 45.0%
!! TTATGCATGGCAGAAGTACC+AGG - chr2_3:55024894-55024913 None:intergenic 45.0%
CTTCTGCCATGCATAAACTC+AGG + chr2_3:55024898-55024917 Msa0299800:CDS 45.0%
CTCTCACCTGAGTTTATGCA+TGG - chr2_3:55024907-55024926 None:intergenic 45.0%
AACTAAACCTCGGAAGTAGG+TGG - chr2_3:55025119-55025138 None:intergenic 45.0%
CTGAACTAAACCTCGGAAGT+AGG - chr2_3:55025122-55025141 None:intergenic 45.0%
CACAAAGAGACGACTTCGAA+TGG + chr2_3:55025203-55025222 Msa0299800:CDS 45.0%
CAGATGAAATTTGGTCGCGC+CGG + chr2_3:55019793-55019812 Msa0299800:intron 50.0%
GGCCTAAAACCGACTAATCC+AGG + chr2_3:55019870-55019889 Msa0299800:intron 50.0%
!! TGCATGTGTCGGTCTCGTTT+TGG + chr2_3:55020434-55020453 Msa0299800:intron 50.0%
CTGCTGCTGAGTAATGGTTG+TGG + chr2_3:55020508-55020527 Msa0299800:intron 50.0%
AGTGTCCGTTACTTAGGTCG+TGG + chr2_3:55021148-55021167 Msa0299800:intron 50.0%
GTGTCCGTTACTTAGGTCGT+GGG + chr2_3:55021149-55021168 Msa0299800:intron 50.0%
TGTGAAGGAGAAACCCTTGG+AGG + chr2_3:55021605-55021624 Msa0299800:intron 50.0%
AGCAATGTTTAGGCGCCTTC+AGG + chr2_3:55022141-55022160 Msa0299800:CDS 50.0%
GGGCACCTAATCACCAATCA+TGG - chr2_3:55022259-55022278 None:intergenic 50.0%
! TGATTGGTGATTAGGTGCCC+AGG + chr2_3:55022259-55022278 Msa0299800:intron 50.0%
CATAGCCCTCAAGGGTAGAA+AGG + chr2_3:55022599-55022618 Msa0299800:intron 50.0%
!! AGGGAATGCTCTAGGGTGAA+AGG + chr2_3:55022657-55022676 Msa0299800:intron 50.0%
TTGAATCTAGCCCCAACGAG+GGG - chr2_3:55023114-55023133 None:intergenic 50.0%
GTTGAATCTAGCCCCAACGA+GGG - chr2_3:55023115-55023134 None:intergenic 50.0%
AGTTGAATCTAGCCCCAACG+AGG - chr2_3:55023116-55023135 None:intergenic 50.0%
CGTTGGGGCTAGATTCAACT+CGG + chr2_3:55023116-55023135 Msa0299800:intron 50.0%
GTACATGTGCGATCCCAAGA+TGG - chr2_3:55025063-55025082 None:intergenic 50.0%
AGAGACGACTTCGAATGGGA+AGG + chr2_3:55025208-55025227 Msa0299800:CDS 50.0%
GACAACAGCGTCGTCGTTCA+TGG - chr2_3:55019671-55019690 None:intergenic 55.0%
TGGGTGACCATAGCTGGAAC+TGG - chr2_3:55019730-55019749 None:intergenic 55.0%
! GCGATTTGGGTGACCATAGC+TGG - chr2_3:55019736-55019755 None:intergenic 55.0%
ATGAAATTTGGTCGCGCCGG+TGG + chr2_3:55019796-55019815 Msa0299800:intron 55.0%
GCCCAAGAACCGACTAATCC+TGG - chr2_3:55019891-55019910 None:intergenic 55.0%
!! GGATTAGTCGGTTCTTGGGC+CGG + chr2_3:55019891-55019910 Msa0299800:intron 55.0%
AGGCGCCTTCAGGTAACTTC+TGG + chr2_3:55022151-55022170 Msa0299800:intron 55.0%
GGCGCCTTCAGGTAACTTCT+GGG + chr2_3:55022152-55022171 Msa0299800:intron 55.0%
!! AGAGTGAAGGATGGTGGGAC+TGG + chr2_3:55023085-55023104 Msa0299800:intron 55.0%
!! GAGTGAAGGATGGTGGGACT+GGG + chr2_3:55023086-55023105 Msa0299800:intron 55.0%
!! ATTTTGGCAGCCTCGCAAGC+TGG + chr2_3:55024250-55024269 Msa0299800:intron 55.0%
! TTTTGGCAGCCTCGCAAGCT+GGG + chr2_3:55024251-55024270 Msa0299800:intron 55.0%
GTGCGATCCCAAGATGGTTG+AGG - chr2_3:55025057-55025076 None:intergenic 55.0%
GCACACAAGGCTACCCCCAA+AGG - chr2_3:55022691-55022710 None:intergenic 60.0%
!! TTGGGGGTAGCCTTGTGTGC+AGG + chr2_3:55022691-55022710 Msa0299800:intron 60.0%
!! TGGGGGTAGCCTTGTGTGCA+GGG + chr2_3:55022692-55022711 Msa0299800:intron 60.0%
AGGGCAGGCCTCAACCATCT+TGG + chr2_3:55025046-55025065 Msa0299800:intron 60.0%
GGGCAGGCCTCAACCATCTT+GGG + chr2_3:55025047-55025066 Msa0299800:intron 60.0%
GTAGGTGGAGCTCCAAGAGC+AGG - chr2_3:55025104-55025123 None:intergenic 60.0%
TGGAGCTCCACCTACTTCCG+AGG + chr2_3:55025109-55025128 Msa0299800:CDS 60.0%
TGGGACTGGGTTCCCCTCGT+TGG + chr2_3:55023099-55023118 Msa0299800:intron 65.0%
GGGACTGGGTTCCCCTCGTT+GGG + chr2_3:55023100-55023119 Msa0299800:intron 65.0%
GGACTGGGTTCCCCTCGTTG+GGG + chr2_3:55023101-55023120 Msa0299800:intron 65.0%
TGTACAGCAGCCGCTGCTGC+TGG + chr2_3:55025078-55025097 Msa0299800:CDS 65.0%
CAAGAGCAGGCCAGCAGCAG+CGG - chr2_3:55025091-55025110 None:intergenic 65.0%
! CGCTGCTGCTGGCCTGCTCT+TGG + chr2_3:55025089-55025108 Msa0299800:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 55019517 55025431 55019517 ID=Msa0299800;Name=Msa0299800
chr2_3 mRNA 55019517 55025431 55019517 ID=Msa0299800-mRNA-1;Parent=Msa0299800;Name=Msa0299800-mRNA-1;_AED=0.25;_eAED=0.26;_QI=0|0.71|0.62|1|0.85|1|8|0|312
chr2_3 exon 55019517 55019741 55019517 ID=Msa0299800-mRNA-1:exon:17528;Parent=Msa0299800-mRNA-1
chr2_3 exon 55020579 55020671 55020579 ID=Msa0299800-mRNA-1:exon:17529;Parent=Msa0299800-mRNA-1
chr2_3 exon 55020778 55020904 55020778 ID=Msa0299800-mRNA-1:exon:17530;Parent=Msa0299800-mRNA-1
chr2_3 exon 55021189 55021298 55021189 ID=Msa0299800-mRNA-1:exon:17531;Parent=Msa0299800-mRNA-1
chr2_3 exon 55022082 55022162 55022082 ID=Msa0299800-mRNA-1:exon:17532;Parent=Msa0299800-mRNA-1
chr2_3 exon 55024837 55024919 55024837 ID=Msa0299800-mRNA-1:exon:17533;Parent=Msa0299800-mRNA-1
chr2_3 exon 55025053 55025245 55025053 ID=Msa0299800-mRNA-1:exon:17534;Parent=Msa0299800-mRNA-1
chr2_3 exon 55025405 55025431 55025405 ID=Msa0299800-mRNA-1:exon:17535;Parent=Msa0299800-mRNA-1
chr2_3 CDS 55019517 55019741 55019517 ID=Msa0299800-mRNA-1:cds;Parent=Msa0299800-mRNA-1
chr2_3 CDS 55020579 55020671 55020579 ID=Msa0299800-mRNA-1:cds;Parent=Msa0299800-mRNA-1
chr2_3 CDS 55020778 55020904 55020778 ID=Msa0299800-mRNA-1:cds;Parent=Msa0299800-mRNA-1
chr2_3 CDS 55021189 55021298 55021189 ID=Msa0299800-mRNA-1:cds;Parent=Msa0299800-mRNA-1
chr2_3 CDS 55022082 55022162 55022082 ID=Msa0299800-mRNA-1:cds;Parent=Msa0299800-mRNA-1
chr2_3 CDS 55024837 55024919 55024837 ID=Msa0299800-mRNA-1:cds;Parent=Msa0299800-mRNA-1
chr2_3 CDS 55025053 55025245 55025053 ID=Msa0299800-mRNA-1:cds;Parent=Msa0299800-mRNA-1
chr2_3 CDS 55025405 55025431 55025405 ID=Msa0299800-mRNA-1:cds;Parent=Msa0299800-mRNA-1
Gene Sequence

>Msa0299800

ATGGCTACTACATTGGTGTCATCAAATCCTTGGACAAGAGCCTTTTTCCTATTCTCATTTTTCCCCAAAAACAAAACTAAGAAACTCACACACCGTTACAATTCCAATTCCAATTCCAATTCGCCACTCTCAACAACAACAACAACAACAGCCATGAACGACGACGCTGTTGTCTCCTTACAAGAATGGCAAGGTTGGGGCACAACATCACCAGTTCCAGCTATGTGCTGGCTTGCTATGGAAGATTGTATGTGTTCACAAATTACATCCTCTTTGCTCTTTCCTGGAATAAAATTTTGGTTATATATGCATCCCAAGGATTTTTTACGACAGAACAACACTGGAAAGCTTTTGTGGCAAGTTTTTGGGGTTGATTGTGCAACTTTGTGCCTTTATGGCATTCCTGAACATGAACAAATCATGTGGAATTCCTTTAAACTGGCAGGAAGAAGTAATGTGTGGTGCCTTTATCCCAACAAGAATGCTGTTTTGGAATCAGTTGAAAATGCTTTTGGTCAGGAACCAGTTGCAAATAATGAAGTATCATCAGAAAAGTTAAAAGCAGATACAACTCAGCATTTTATTTTGATTGATGGGACATGGAGCAATTCAGCAGCAATGTTTAGGCGCCTTCAGGATCAAGCGAAGTCAATTTGGGGAGATGAGGACCTTTCTTGTATATCGCTAAATCCTGGTACTTCTGCCATGCATAAACTCAGGCCTCAACCATCTTGGGATCGCACATGTACAGCAGCCGCTGCTGCTGGCCTGCTCTTGGAGCTCCACCTACTTCCGAGGTTTAGTTCAGCTGAAATGGATAAACAGGCAGAAACAGTTGAACATGCTTTAACAGTTCTATTAGAAGCTCTCACAAAGAGACGACTTCGAATGGGAAGGTCCATAACACGAAAAAGGCTTCAAGTTTCAAGGTTTAGTTGA

Protein sequence

>Msa0299800

MATTLVSSNPWTRAFFLFSFFPKNKTKKLTHRYNSNSNSNSPLSTTTTTTAMNDDAVVSLQEWQGWGTTSPVPAMCWLAMEDCMCSQITSSLLFPGIKFWLYMHPKDFLRQNNTGKLLWQVFGVDCATLCLYGIPEHEQIMWNSFKLAGRSNVWCLYPNKNAVLESVENAFGQEPVANNEVSSEKLKADTTQHFILIDGTWSNSAAMFRRLQDQAKSIWGDEDLSCISLNPGTSAMHKLRPQPSWDRTCTAAAAAGLLLELHLLPRFSSAEMDKQAETVEHALTVLLEALTKRRLRMGRSITRKRLQVSRFS*