Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299800 | KEH39126.1 | 73.171 | 82 | 17 | 1 | 1 | 82 | 1 | 77 | 2.05e-19 | 99.4 |
| Msa0299800 | KEH39126.1 | 95.122 | 246 | 12 | 0 | 67 | 312 | 138 | 383 | 3.93e-174 | 497 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299800 | A0A072VBY4 | 73.171 | 82 | 17 | 1 | 1 | 82 | 1 | 77 | 9.80e-20 | 99.4 |
| Msa0299800 | A0A072VBY4 | 95.122 | 246 | 12 | 0 | 67 | 312 | 138 | 383 | 1.88e-174 | 497 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0220650 | Msa0299800 | 0.895924 | 6.035617e-76 | -8.615850e-47 |
| Msa0299800 | Msa0785430 | 0.800600 | 1.335689e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299800 | MtrunA17_Chr2g0324301 | 95.378 | 238 | 11 | 0 | 67 | 304 | 138 | 375 | 2.51e-172 | 482 |
| Msa0299800 | MtrunA17_Chr2g0324301 | 73.171 | 82 | 17 | 1 | 1 | 82 | 1 | 77 | 2.34e-23 | 99.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299800 | AT1G03687.1 | 66.946 | 239 | 76 | 3 | 67 | 304 | 137 | 373 | 8.59e-111 | 327 |
| Msa0299800 | AT1G03687.2 | 63.429 | 175 | 61 | 3 | 67 | 240 | 137 | 309 | 2.40e-73 | 228 |
Find 65 sgRNAs with CRISPR-Local
Find 359 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTCCTGGAATAAAATTT+TGG | 0.174919 | 2_3:+55020631 | Msa0299800:CDS |
| TGTGCAACTTTGTGCCTTTA+TGG | 0.186040 | 2_3:+55020835 | Msa0299800:CDS |
| CGCTGCTGCTGGCCTGCTCT+TGG | 0.224629 | 2_3:+55025089 | Msa0299800:CDS |
| TGAGAGACCTGCCAGTTTAA+AGG | 0.232795 | 2_3:-55020890 | None:intergenic |
| AGGATCAAGCGAAGTCAATT+TGG | 0.238713 | 2_3:+55024835 | Msa0299800:intron |
| CACATGATTTGTTCATGTTC+AGG | 0.250834 | 2_3:-55020862 | None:intergenic |
| CAGCATTCTTGTTGGGATAA+AGG | 0.261224 | 2_3:-55021208 | None:intergenic |
| TCCCAACAAGAATGCTGTTT+TGG | 0.276901 | 2_3:+55021214 | Msa0299800:CDS |
| GAATCAGTTGAAAATGCTTT+TGG | 0.285733 | 2_3:+55021236 | Msa0299800:CDS |
| ACATCCTCTTTGCTCTTTCC+TGG | 0.291974 | 2_3:+55020618 | Msa0299800:CDS |
| GGATCAAGCGAAGTCAATTT+GGG | 0.337508 | 2_3:+55024836 | Msa0299800:intron |
| CATGTGGAATTCCTTTAAAC+TGG | 0.337625 | 2_3:+55020879 | Msa0299800:CDS |
| TTCAGCTGAAATGGATAAAC+AGG | 0.359225 | 2_3:+55025137 | Msa0299800:CDS |
| GCAATTCAGCAGCAATGTTT+AGG | 0.361486 | 2_3:+55022131 | Msa0299800:CDS |
| TGGCGAATTGGAATTGGAAT+TGG | 0.367037 | 2_3:-55019620 | None:intergenic |
| TGAGAGTGGCGAATTGGAAT+TGG | 0.377441 | 2_3:-55019626 | None:intergenic |
| GAGGTTTAGTTCAGCTGAAA+TGG | 0.379797 | 2_3:+55025128 | Msa0299800:CDS |
| TGTACAGCAGCCGCTGCTGC+TGG | 0.394872 | 2_3:+55025078 | Msa0299800:CDS |
| GCGATTTGGGTGACCATAGC+TGG | 0.400102 | 2_3:-55019733 | None:intergenic |
| GATACTTCATTATTTGCAAC+TGG | 0.402551 | 2_3:-55021266 | None:intergenic |
| CCAACCTTGCCATTCTTGTA+AGG | 0.404114 | 2_3:-55019692 | None:intergenic |
| TCCAAAACAGCATTCTTGTT+GGG | 0.416746 | 2_3:-55021215 | None:intergenic |
| TACAGAGGCTTCAAGTTTCA+AGG | 0.419131 | 2_3:+55025400 | Msa0299800:intron |
| CTTACAAGAATGGCAAGGTT+GGG | 0.427117 | 2_3:+55019693 | Msa0299800:CDS |
| GACAACAGCGTCGTCGTTCA+TGG | 0.428853 | 2_3:-55019668 | None:intergenic |
| AGCAATGTTTAGGCGCCTTC+AGG | 0.438148 | 2_3:+55022141 | Msa0299800:CDS |
| TGTTGTTGAGAGTGGCGAAT+TGG | 0.442979 | 2_3:-55019632 | None:intergenic |
| GGGCAGGCCTCAACCATCTT+GGG | 0.460650 | 2_3:+55025047 | Msa0299800:intron |
| AGGGCAGGCCTCAACCATCT+TGG | 0.465462 | 2_3:+55025046 | Msa0299800:intron |
| AAAGAAAATGGCTACTACAT+TGG | 0.467839 | 2_3:+55019510 | None:intergenic |
| CCTTACAAGAATGGCAAGGT+TGG | 0.469429 | 2_3:+55019692 | Msa0299800:CDS |
| CATTGGTGTCATCAAATCCT+TGG | 0.472954 | 2_3:+55019527 | Msa0299800:CDS |
| CACAAAGAGACGACTTCGAA+TGG | 0.476866 | 2_3:+55025203 | Msa0299800:CDS |
| TTCCAAAACAGCATTCTTGT+TGG | 0.476920 | 2_3:-55021216 | None:intergenic |
| TGGAATTCCTTTAAACTGGC+AGG | 0.481223 | 2_3:+55020883 | Msa0299800:CDS |
| CATGTTCAGGAATGCCATAA+AGG | 0.486797 | 2_3:-55020849 | None:intergenic |
| GTAGGTGGAGCTCCAAGAGC+AGG | 0.491772 | 2_3:-55025101 | None:intergenic |
| TTTGTAGTGCTGGCTTGCTA+TGG | 0.497959 | 2_3:+55020572 | Msa0299800:intron |
| CTCTCACCTGAGTTTATGCA+TGG | 0.503816 | 2_3:-55024904 | None:intergenic |
| TAATGAAGTATCATCAGAAA+AGG | 0.511233 | 2_3:+55021277 | Msa0299800:CDS |
| CAAGAGCAGGCCAGCAGCAG+CGG | 0.520561 | 2_3:-55025088 | None:intergenic |
| TTATGCATGGCAGAAGTACC+AGG | 0.524465 | 2_3:-55024891 | None:intergenic |
| TCTTGTATATCGCTAAATCC+TGG | 0.525128 | 2_3:+55024873 | Msa0299800:CDS |
| CTGTTGTCTCCTTACAAGAA+TGG | 0.526241 | 2_3:+55019683 | Msa0299800:CDS |
| TTACAAGAATGGCAAGGTTG+GGG | 0.538692 | 2_3:+55019694 | Msa0299800:CDS |
| ACAAAGAGACGACTTCGAAT+GGG | 0.546696 | 2_3:+55025204 | Msa0299800:CDS |
| TGGGTGACCATAGCTGGAAC+TGG | 0.551282 | 2_3:-55019727 | None:intergenic |
| AACATCACCAGTTCCAGCTA+TGG | 0.553572 | 2_3:+55019720 | Msa0299800:CDS |
| CTGAACTAAACCTCGGAAGT+AGG | 0.573085 | 2_3:-55025119 | None:intergenic |
| TTGGTTATATATGCATCCCA+AGG | 0.580805 | 2_3:+55020650 | Msa0299800:CDS |
| TGGAGCTCCACCTACTTCCG+AGG | 0.587727 | 2_3:+55025109 | Msa0299800:CDS |
| GTGCGATCCCAAGATGGTTG+AGG | 0.588081 | 2_3:-55025054 | None:intergenic |
| GATTTAGCGATATACAAGAA+AGG | 0.591739 | 2_3:-55024869 | None:intergenic |
| GAAGTCAATTTGGGGAGATG+AGG | 0.600051 | 2_3:+55024845 | Msa0299800:CDS |
| CTGAACATGAACAAATCATG+TGG | 0.603947 | 2_3:+55020863 | Msa0299800:CDS |
| AATTGGAATTGGAATTGTAA+CGG | 0.608544 | 2_3:-55019609 | None:intergenic |
| AACTAAACCTCGGAAGTAGG+TGG | 0.612586 | 2_3:-55025116 | None:intergenic |
| GTCTCCTTACAAGAATGGCA+AGG | 0.637136 | 2_3:+55019688 | Msa0299800:CDS |
| CTTCTGCCATGCATAAACTC+AGG | 0.637795 | 2_3:+55024898 | Msa0299800:CDS |
| TATTCCAGGAAAGAGCAAAG+AGG | 0.652194 | 2_3:-55020622 | None:intergenic |
| ATTTCAGCTGAACTAAACCT+CGG | 0.661199 | 2_3:-55025126 | None:intergenic |
| GATCAAGCGAAGTCAATTTG+GGG | 0.667499 | 2_3:+55024837 | Msa0299800:CDS |
| GTACATGTGCGATCCCAAGA+TGG | 0.674168 | 2_3:-55025060 | None:intergenic |
| AGAGACGACTTCGAATGGGA+AGG | 0.693993 | 2_3:+55025208 | Msa0299800:CDS |
| ATTCAGGAAGAAGTAATGTG+TGG | 0.772031 | 2_3:+55021183 | Msa0299800:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTACATTTCTTATATTATTT+TGG | - | chr2_3:55021062-55021081 | None:intergenic | 10.0% |
| !! | ATTAATATTATATACTTCAT+AGG | - | chr2_3:55021798-55021817 | None:intergenic | 10.0% |
| !! | ATTAAGAAAAAAATATTACT+TGG | - | chr2_3:55022052-55022071 | None:intergenic | 10.0% |
| !!! | TTTTTTCAATTAAGATAACA+GGG | - | chr2_3:55020202-55020221 | None:intergenic | 15.0% |
| !!! | AATCATTTTATTTTTTCTGA+AGG | - | chr2_3:55020402-55020421 | None:intergenic | 15.0% |
| !! | AATATATATGAATTGTGATT+TGG | + | chr2_3:55020687-55020706 | Msa0299800:intron | 15.0% |
| !! | AGTAAATACTTTATGAAAAA+TGG | - | chr2_3:55020739-55020758 | None:intergenic | 15.0% |
| !! | TAACATTAAATACATGAAAA+TGG | - | chr2_3:55021755-55021774 | None:intergenic | 15.0% |
| !! | ATTATATTATATAAGCAACA+CGG | + | chr2_3:55022900-55022919 | Msa0299800:intron | 15.0% |
| !!! | TATCATCTGTTTTTTTTTTT+GGG | - | chr2_3:55023880-55023899 | None:intergenic | 15.0% |
| !!! | ATATCATCTGTTTTTTTTTT+TGG | - | chr2_3:55023881-55023900 | None:intergenic | 15.0% |
| !!! | TTGCTATTGATTAAAATTTT+GGG | + | chr2_3:55024129-55024148 | Msa0299800:intron | 15.0% |
| !! | GTTAATAAAGAGAAAATATA+TGG | + | chr2_3:55024407-55024426 | Msa0299800:intron | 15.0% |
| !!! | TTGCATGTTTTTAATATTTT+AGG | - | chr2_3:55024722-55024741 | None:intergenic | 15.0% |
| !!! | AGTTTCTTAGTTTTGTTTTT+GGG | - | chr2_3:55019583-55019602 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTTCTAGAAAACT+CGG | + | chr2_3:55019842-55019861 | Msa0299800:intron | 20.0% |
| !!! | ATTGAATTGGTTGATTTTTA+GGG | + | chr2_3:55019963-55019982 | Msa0299800:intron | 20.0% |
| !!! | TTTTTCAATTAAGATAACAG+GGG | - | chr2_3:55020201-55020220 | None:intergenic | 20.0% |
| !!! | GTTTTTTCAATTAAGATAAC+AGG | - | chr2_3:55020203-55020222 | None:intergenic | 20.0% |
| !! | GTAGTATTCGATAAAAATAA+GGG | - | chr2_3:55020281-55020300 | None:intergenic | 20.0% |
| !! | TGTAGTATTCGATAAAAATA+AGG | - | chr2_3:55020282-55020301 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTTTTTGTAGTGC+TGG | + | chr2_3:55020562-55020581 | Msa0299800:intron | 20.0% |
| !!! | TATAACCAAAATTTTATTCC+AGG | - | chr2_3:55020639-55020658 | None:intergenic | 20.0% |
| !! | AATTAATGTAAATTGCTTCA+AGG | - | chr2_3:55021713-55021732 | None:intergenic | 20.0% |
| !! | CAATTTACATTAATTGAGTT+TGG | + | chr2_3:55021718-55021737 | Msa0299800:intron | 20.0% |
| !!! | AACCAAAATTCATTTGTTAT+TGG | + | chr2_3:55021969-55021988 | Msa0299800:intron | 20.0% |
| !!! | AGCATTTTATTTTGATTGAT+GGG | + | chr2_3:55022101-55022120 | Msa0299800:CDS | 20.0% |
| !!! | AATAAGATTTTATTCTACCT+GGG | - | chr2_3:55022279-55022298 | None:intergenic | 20.0% |
| !!! | AACAGCATATTTTTATGTAT+AGG | + | chr2_3:55022300-55022319 | Msa0299800:intron | 20.0% |
| !! | AATAATTAAGTATAGTGACT+AGG | + | chr2_3:55022637-55022656 | Msa0299800:intron | 20.0% |
| !! | ATAATTAAGTATAGTGACTA+GGG | + | chr2_3:55022638-55022657 | Msa0299800:intron | 20.0% |
| !! | TTTGTCAAAAATAAAAACCA+CGG | - | chr2_3:55023611-55023630 | None:intergenic | 20.0% |
| !! | TGATATCAATTTAATGACAT+AGG | - | chr2_3:55023650-55023669 | None:intergenic | 20.0% |
| !!! | GTTGCTATTGATTAAAATTT+TGG | + | chr2_3:55024128-55024147 | Msa0299800:intron | 20.0% |
| !!! | ATTAAAATTTTGGGAGAAAA+TGG | + | chr2_3:55024138-55024157 | Msa0299800:intron | 20.0% |
| !!! | TAAGAAAAATGCATCAATTT+TGG | + | chr2_3:55024234-55024253 | Msa0299800:intron | 20.0% |
| !!! | ATAATATGCAATTTTGCTAA+AGG | + | chr2_3:55024618-55024637 | Msa0299800:intron | 20.0% |
| !!! | GTTCAAGTTTTTAAATTCAA+TGG | + | chr2_3:55024743-55024762 | Msa0299800:intron | 20.0% |
| !!! | TATGATATTTTGTTTTCAAC+AGG | + | chr2_3:55024815-55024834 | Msa0299800:intron | 20.0% |
| ! | GAAAAATGAGAATAGGAAAA+AGG | - | chr2_3:55019560-55019579 | None:intergenic | 25.0% |
| !!! | GTTTCTTAGTTTTGTTTTTG+GGG | - | chr2_3:55019582-55019601 | None:intergenic | 25.0% |
| !!! | GAGTTTCTTAGTTTTGTTTT+TGG | - | chr2_3:55019584-55019603 | None:intergenic | 25.0% |
| ! | AATTGGAATTGGAATTGTAA+CGG | - | chr2_3:55019612-55019631 | None:intergenic | 25.0% |
| !!! | GATTGAATTGGTTGATTTTT+AGG | + | chr2_3:55019962-55019981 | Msa0299800:intron | 25.0% |
| !!! | TTGAATTGGTTGATTTTTAG+GGG | + | chr2_3:55019964-55019983 | Msa0299800:intron | 25.0% |
| !! | TCTTTCCTGGAATAAAATTT+TGG | + | chr2_3:55020631-55020650 | Msa0299800:CDS | 25.0% |
| ! | TTATTATATGTCCAAACCTT+GGG | - | chr2_3:55020669-55020688 | None:intergenic | 25.0% |
| ! | ATTATTATATGTCCAAACCT+TGG | - | chr2_3:55020670-55020689 | None:intergenic | 25.0% |
| !!! | TATGAATTGTGATTTGGTTA+TGG | + | chr2_3:55020693-55020712 | Msa0299800:intron | 25.0% |
| !! | ACAATTTTCAGTCACTATTA+TGG | + | chr2_3:55020920-55020939 | Msa0299800:intron | 25.0% |
| ! | ATTCTATAGTCAACCAAATA+TGG | + | chr2_3:55021090-55021109 | Msa0299800:intron | 25.0% |
| !! | TAATGAAGTATCATCAGAAA+AGG | + | chr2_3:55021277-55021296 | Msa0299800:CDS | 25.0% |
| !! | ACTAAATTAGACTTGTTCAA+CGG | - | chr2_3:55021378-55021397 | None:intergenic | 25.0% |
| ! | TGTATAAGTAAGAGAATACA+AGG | + | chr2_3:55021498-55021517 | Msa0299800:intron | 25.0% |
| ! | GACATATCCTTAAAAAAAAG+AGG | + | chr2_3:55021527-55021546 | Msa0299800:intron | 25.0% |
| !! | AGCCAATAACAAATGAATTT+TGG | - | chr2_3:55021974-55021993 | None:intergenic | 25.0% |
| !!! | CAGCATTTTATTTTGATTGA+TGG | + | chr2_3:55022100-55022119 | Msa0299800:CDS | 25.0% |
| !! | CAATAAGATTTTATTCTACC+TGG | - | chr2_3:55022280-55022299 | None:intergenic | 25.0% |
| ! | TGATAAAGCAAATGACAATA+CGG | + | chr2_3:55022450-55022469 | Msa0299800:intron | 25.0% |
| ! | ATAATTAGCGTAATATGAGT+TGG | + | chr2_3:55022491-55022510 | Msa0299800:intron | 25.0% |
| !!! | AGTAAGTTGATAAGTTTGTT+AGG | + | chr2_3:55022531-55022550 | Msa0299800:intron | 25.0% |
| ! | TAAAGATTGCAAATGAATGA+AGG | - | chr2_3:55022780-55022799 | None:intergenic | 25.0% |
| ! | TTTGCAATCTTTATTCTAGT+TGG | + | chr2_3:55022787-55022806 | Msa0299800:intron | 25.0% |
| ! | AAGAAAGAATTACCAAAACA+GGG | - | chr2_3:55022839-55022858 | None:intergenic | 25.0% |
| ! | TAAGAAAGAATTACCAAAAC+AGG | - | chr2_3:55022840-55022859 | None:intergenic | 25.0% |
| !! | AAAACACCAAACTACATTTT+AGG | + | chr2_3:55023421-55023440 | Msa0299800:intron | 25.0% |
| !!! | TTTGAACAAACTGCTATTTT+CGG | + | chr2_3:55023806-55023825 | Msa0299800:intron | 25.0% |
| !!! | TCTGTTTTTTTTTTTGGGAA+AGG | - | chr2_3:55023875-55023894 | None:intergenic | 25.0% |
| ! | TACAGTGATCATAATCTATA+GGG | - | chr2_3:55023918-55023937 | None:intergenic | 25.0% |
| ! | TTAAACTATTGTTGCATAAG+AGG | - | chr2_3:55024286-55024305 | None:intergenic | 25.0% |
| ! | TAGAATCATGTATCAAAAGA+AGG | - | chr2_3:55024311-55024330 | None:intergenic | 25.0% |
| ! | TTATTAACTACTCACTTTAG+AGG | - | chr2_3:55024395-55024414 | None:intergenic | 25.0% |
| !!! | ATCATTGATTTGTTTATCGA+CGG | + | chr2_3:55024479-55024498 | Msa0299800:intron | 25.0% |
| !!! | TAATCATGTTTTTGCATCTT+AGG | + | chr2_3:55024555-55024574 | Msa0299800:intron | 25.0% |
| !!! | ATATTTTAGGACTATATCTC+AGG | - | chr2_3:55024709-55024728 | None:intergenic | 25.0% |
| ! | TGCTTTCTTATCTTAGTTAT+TGG | + | chr2_3:55024974-55024993 | Msa0299800:intron | 25.0% |
| !!! | CCTCTTGCAATTTTTTAAAT+CGG | + | chr2_3:55025305-55025324 | Msa0299800:intron | 25.0% |
| !!! | CTCTTGCAATTTTTTAAATC+GGG | + | chr2_3:55025306-55025325 | Msa0299800:intron | 25.0% |
| ! | TCTGTAAAAAATTAACATGG+AGG | - | chr2_3:55025386-55025405 | None:intergenic | 25.0% |
| !!! | TCCATGTTAATTTTTTACAG+AGG | + | chr2_3:55025385-55025404 | Msa0299800:intron | 25.0% |
| !! | TTTTGGGGAAAAATGAGAAT+AGG | - | chr2_3:55019567-55019586 | None:intergenic | 30.0% |
| CTTTAAATCTTCAGCGATTT+GGG | - | chr2_3:55019749-55019768 | None:intergenic | 30.0% | |
| TTCGATTCTCAGATGAAATT+TGG | + | chr2_3:55019784-55019803 | Msa0299800:intron | 30.0% | |
| AAAGTTACAAGTGAGTATGT+TGG | + | chr2_3:55019819-55019838 | Msa0299800:intron | 30.0% | |
| ! | TTTCTAGAAAACTCGGTATT+CGG | + | chr2_3:55019849-55019868 | Msa0299800:intron | 30.0% |
| TTTGTGTGATGTGATTGAAT+TGG | + | chr2_3:55019950-55019969 | Msa0299800:intron | 30.0% | |
| !! | GTTGATTTTTAGGGGAATTT+TGG | + | chr2_3:55019972-55019991 | Msa0299800:intron | 30.0% |
| !! | ACTTTTTAGTCTTCATATGC+AGG | + | chr2_3:55020756-55020775 | Msa0299800:intron | 30.0% |
| GAAATAGTAGAAACTATGCT+AGG | - | chr2_3:55020990-55021009 | None:intergenic | 30.0% | |
| !! | ATTTTGGAAGCAGTAAAAGT+CGG | - | chr2_3:55021046-55021065 | None:intergenic | 30.0% |
| TATAGTCAACCAAATATGGA+TGG | + | chr2_3:55021094-55021113 | Msa0299800:intron | 30.0% | |
| ATAGTCAACCAAATATGGAT+GGG | + | chr2_3:55021095-55021114 | Msa0299800:intron | 30.0% | |
| CATTTATTCCCATCCATATT+TGG | - | chr2_3:55021106-55021125 | None:intergenic | 30.0% | |
| ! | GAATCAGTTGAAAATGCTTT+TGG | + | chr2_3:55021236-55021255 | Msa0299800:CDS | 30.0% |
| GATACTTCATTATTTGCAAC+TGG | - | chr2_3:55021269-55021288 | None:intergenic | 30.0% | |
| TTTAGTAGAGTTCAATCTTG+AGG | + | chr2_3:55021392-55021411 | Msa0299800:intron | 30.0% | |
| GTAAGAGAATACAAGGATAT+AGG | + | chr2_3:55021505-55021524 | Msa0299800:intron | 30.0% | |
| !!! | CCTCTATCCTCTTTTTTTTA+AGG | - | chr2_3:55021537-55021556 | None:intergenic | 30.0% |
| CCTTAAAAAAAAGAGGATAG+AGG | + | chr2_3:55021534-55021553 | Msa0299800:intron | 30.0% | |
| AAGAAATGAAATTGCACTAC+TGG | + | chr2_3:55021831-55021850 | Msa0299800:intron | 30.0% | |
| !! | AGATTTTGCTATCTTCCATT+TGG | + | chr2_3:55022021-55022040 | Msa0299800:intron | 30.0% |
| !!! | TTATTTTGATTGATGGGACA+TGG | + | chr2_3:55022107-55022126 | Msa0299800:CDS | 30.0% |
| AAATTAACCTACTCCATGAT+TGG | + | chr2_3:55022243-55022262 | Msa0299800:intron | 30.0% | |
| ! | ATGTTTAAAACATCTAGCAC+AGG | + | chr2_3:55022372-55022391 | Msa0299800:intron | 30.0% |
| CACAGGATCTAAATACAATT+TGG | + | chr2_3:55022389-55022408 | Msa0299800:intron | 30.0% | |
| ! | TGTCATTTGCTTTATCACTA+AGG | - | chr2_3:55022447-55022466 | None:intergenic | 30.0% |
| !! | AAGTTGATAAGTTTGTTAGG+TGG | + | chr2_3:55022534-55022553 | Msa0299800:intron | 30.0% |
| GTTGTTAAGAGTTGTTAGTT+TGG | + | chr2_3:55022556-55022575 | Msa0299800:intron | 30.0% | |
| ATCGAAAGAGAAGATACAAA+AGG | - | chr2_3:55022736-55022755 | None:intergenic | 30.0% | |
| GGATTTCTTATTGATGAAGT+GGG | - | chr2_3:55022759-55022778 | None:intergenic | 30.0% | |
| AGGATTTCTTATTGATGAAG+TGG | - | chr2_3:55022760-55022779 | None:intergenic | 30.0% | |
| !! | ATTCTAGTTGGAACTTTTCT+CGG | + | chr2_3:55022799-55022818 | Msa0299800:intron | 30.0% |
| TCTTTCTTATAGCAGAAGAA+AGG | + | chr2_3:55022851-55022870 | Msa0299800:intron | 30.0% | |
| ! | AACACGGATTAAACTAAGAT+GGG | + | chr2_3:55022916-55022935 | Msa0299800:intron | 30.0% |
| ! | TATTCTGGTCTAGTTTGATT+TGG | - | chr2_3:55022951-55022970 | None:intergenic | 30.0% |
| ! | TTGTGATGCTATTTGTATTC+TGG | - | chr2_3:55022966-55022985 | None:intergenic | 30.0% |
| TTGTATGCTCTATATTGCTA+TGG | - | chr2_3:55023016-55023035 | None:intergenic | 30.0% | |
| GGTTAATTGTAAACCTCAAA+AGG | + | chr2_3:55023194-55023213 | Msa0299800:intron | 30.0% | |
| ATTGTAAACCTCAAAAGGTA+AGG | + | chr2_3:55023199-55023218 | Msa0299800:intron | 30.0% | |
| ! | GTAAGGTTGTTCATATTTTC+TGG | + | chr2_3:55023216-55023235 | Msa0299800:intron | 30.0% |
| GATATGCCTAAAATGTAGTT+TGG | - | chr2_3:55023430-55023449 | None:intergenic | 30.0% | |
| ! | AACTACATTTTAGGCATATC+TGG | + | chr2_3:55023430-55023449 | Msa0299800:intron | 30.0% |
| ! | ACTACATTTTAGGCATATCT+GGG | + | chr2_3:55023431-55023450 | Msa0299800:intron | 30.0% |
| ! | ATTTTTGACAAAGACAACCA+TGG | + | chr2_3:55023619-55023638 | Msa0299800:intron | 30.0% |
| TTCAAATTCTGCTATGTTAC+AGG | - | chr2_3:55023792-55023811 | None:intergenic | 30.0% | |
| AAACAGATGATATCATGTAG+AGG | + | chr2_3:55023888-55023907 | Msa0299800:intron | 30.0% | |
| GTACAGTGATCATAATCTAT+AGG | - | chr2_3:55023919-55023938 | None:intergenic | 30.0% | |
| TCTTCGAAGTTCAAACATAA+TGG | - | chr2_3:55024000-55024019 | None:intergenic | 30.0% | |
| !!! | AGTTTGTAAGGAAGCTTTTT+TGG | - | chr2_3:55024065-55024084 | None:intergenic | 30.0% |
| ACAACACTCTACAACATAAT+TGG | - | chr2_3:55024092-55024111 | None:intergenic | 30.0% | |
| CAGAACAACAATTATCTTGT+CGG | - | chr2_3:55024213-55024232 | None:intergenic | 30.0% | |
| ATTAAATAGAGCAAGAAGTG+AGG | - | chr2_3:55024539-55024558 | None:intergenic | 30.0% | |
| ! | TTTTGCATCTTAGGATGAAA+AGG | + | chr2_3:55024564-55024583 | Msa0299800:intron | 30.0% |
| TCATGTCTAAATGTTGTACA+AGG | - | chr2_3:55024599-55024618 | None:intergenic | 30.0% | |
| GATTTAGCGATATACAAGAA+AGG | - | chr2_3:55024872-55024891 | None:intergenic | 30.0% | |
| ACTAAGATAAGAAAGCAAGA+AGG | - | chr2_3:55024971-55024990 | None:intergenic | 30.0% | |
| TGAAGTCTAATTCCGATTTA+TGG | + | chr2_3:55025016-55025035 | Msa0299800:intron | 30.0% | |
| CCGATTTAAAAAATTGCAAG+AGG | - | chr2_3:55025308-55025327 | None:intergenic | 30.0% | |
| ! | GTTGTCACTATTTCTCATTA+GGG | - | chr2_3:55025342-55025361 | None:intergenic | 30.0% |
| ! | TGTTGTCACTATTTCTCATT+AGG | - | chr2_3:55025343-55025362 | None:intergenic | 30.0% |
| GCCTCTGTAAAAAATTAACA+TGG | - | chr2_3:55025389-55025408 | None:intergenic | 30.0% | |
| ! | GCTTTAAATCTTCAGCGATT+TGG | - | chr2_3:55019750-55019769 | None:intergenic | 35.0% |
| CACCAACATTACTCAATATC+CGG | - | chr2_3:55019913-55019932 | None:intergenic | 35.0% | |
| ! | CTAAAGCCTTATAAGTTGCA+CGG | - | chr2_3:55020019-55020038 | None:intergenic | 35.0% |
| CAAAGGTTATCTTTGTCAGA+AGG | + | chr2_3:55020103-55020122 | Msa0299800:intron | 35.0% | |
| !!! | TTTTTTCTGAAGGCTCTGTT+TGG | - | chr2_3:55020392-55020411 | None:intergenic | 35.0% |
| CAAATATGCTATGCATGTGT+CGG | + | chr2_3:55020423-55020442 | Msa0299800:intron | 35.0% | |
| TTGGTTATATATGCATCCCA+AGG | + | chr2_3:55020650-55020669 | Msa0299800:CDS | 35.0% | |
| TATATATGCATCCCAAGGTT+TGG | + | chr2_3:55020655-55020674 | Msa0299800:intron | 35.0% | |
| ! | TTTTTACGACAGAACAACAC+TGG | + | chr2_3:55020781-55020800 | Msa0299800:CDS | 35.0% |
| ! | AAGCTTTTGTGGCAAGTTTT+TGG | + | chr2_3:55020805-55020824 | Msa0299800:CDS | 35.0% |
| ! | AGCTTTTGTGGCAAGTTTTT+GGG | + | chr2_3:55020806-55020825 | Msa0299800:CDS | 35.0% |
| !! | CACATGATTTGTTCATGTTC+AGG | - | chr2_3:55020865-55020884 | None:intergenic | 35.0% |
| CTGAACATGAACAAATCATG+TGG | + | chr2_3:55020863-55020882 | Msa0299800:CDS | 35.0% | |
| CATGTGGAATTCCTTTAAAC+TGG | + | chr2_3:55020879-55020898 | Msa0299800:CDS | 35.0% | |
| AAAGTAGTCAGATTCGATCT+TGG | + | chr2_3:55020955-55020974 | Msa0299800:intron | 35.0% | |
| CATTACTTCTTCCTGAATCA+AGG | - | chr2_3:55021181-55021200 | None:intergenic | 35.0% | |
| ATTCAGGAAGAAGTAATGTG+TGG | + | chr2_3:55021183-55021202 | Msa0299800:intron | 35.0% | |
| TCCAAAACAGCATTCTTGTT+GGG | - | chr2_3:55021218-55021237 | None:intergenic | 35.0% | |
| TTCCAAAACAGCATTCTTGT+TGG | - | chr2_3:55021219-55021238 | None:intergenic | 35.0% | |
| ! | AGTTGAAAATGCTTTTGGTC+AGG | + | chr2_3:55021241-55021260 | Msa0299800:CDS | 35.0% |
| GGGGTGTATTGTTAAGATAT+AGG | + | chr2_3:55021433-55021452 | Msa0299800:intron | 35.0% | |
| TAAGATATAGGACAAGCAGA+AGG | + | chr2_3:55021445-55021464 | Msa0299800:intron | 35.0% | |
| ! | TATTACTTGGTAGCACCAAA+TGG | - | chr2_3:55022039-55022058 | None:intergenic | 35.0% |
| AAAGCAAATGACAATACGGT+AGG | + | chr2_3:55022454-55022473 | Msa0299800:intron | 35.0% | |
| ! | TATTCAAATCTGCCCTGTTT+TGG | + | chr2_3:55022824-55022843 | Msa0299800:intron | 35.0% |
| ! | CAACACGGATTAAACTAAGA+TGG | + | chr2_3:55022915-55022934 | Msa0299800:intron | 35.0% |
| GCATCACAAGTCAAAACTAA+TGG | + | chr2_3:55022977-55022996 | Msa0299800:intron | 35.0% | |
| GCATACAAGTTCAAAATCGT+TGG | + | chr2_3:55023028-55023047 | Msa0299800:intron | 35.0% | |
| TCACAGTTACTAAAGAGTGA+AGG | + | chr2_3:55023072-55023091 | Msa0299800:intron | 35.0% | |
| AGTTACTAAAGAGTGAAGGA+TGG | + | chr2_3:55023076-55023095 | Msa0299800:intron | 35.0% | |
| GTTTGTTTCCTTCATCTTGT+TGG | + | chr2_3:55023164-55023183 | Msa0299800:intron | 35.0% | |
| ! | ATGAACAACCTTACCTTTTG+AGG | - | chr2_3:55023210-55023229 | None:intergenic | 35.0% |
| TTTGCGAGTTCGATTATGTT+GGG | + | chr2_3:55023239-55023258 | Msa0299800:intron | 35.0% | |
| CCATCTATAAAGGAGAAAAG+CGG | - | chr2_3:55023293-55023312 | None:intergenic | 35.0% | |
| ! | CGCTTTTCTCCTTTATAGAT+GGG | + | chr2_3:55023291-55023310 | Msa0299800:intron | 35.0% |
| ! | CTTTATAGATGGGTTCATGT+GGG | + | chr2_3:55023301-55023320 | Msa0299800:intron | 35.0% |
| ! | CTACATTTTAGGCATATCTG+GGG | + | chr2_3:55023432-55023451 | Msa0299800:intron | 35.0% |
| ! | TACATTTTAGGCATATCTGG+GGG | + | chr2_3:55023433-55023452 | Msa0299800:intron | 35.0% |
| TTTAACGAGTCTACGCATAA+TGG | - | chr2_3:55023466-55023485 | None:intergenic | 35.0% | |
| CCATGCAAGTATATGATTCT+TGG | - | chr2_3:55023559-55023578 | None:intergenic | 35.0% | |
| CCAAGAATCATATACTTGCA+TGG | + | chr2_3:55023556-55023575 | Msa0299800:intron | 35.0% | |
| TAATGACATAGGTCTAACCA+TGG | - | chr2_3:55023639-55023658 | None:intergenic | 35.0% | |
| TGCTCAAATAGCAGATATAG+TGG | + | chr2_3:55023673-55023692 | Msa0299800:intron | 35.0% | |
| GCTATTTGACAACACTTGTA+CGG | - | chr2_3:55023748-55023767 | None:intergenic | 35.0% | |
| ! | GTACAAGTGTTGTCAAATAG+CGG | + | chr2_3:55023747-55023766 | Msa0299800:intron | 35.0% |
| TCAACCAGTATTGTCAATCA+CGG | - | chr2_3:55023836-55023855 | None:intergenic | 35.0% | |
| ATAATTGGCAGCAGTTTGTA+AGG | - | chr2_3:55024077-55024096 | None:intergenic | 35.0% | |
| TTGATACATGATTCTAGCAG+AGG | + | chr2_3:55024315-55024334 | Msa0299800:intron | 35.0% | |
| TAGCAGAGGTTTAGATGTTA+TGG | + | chr2_3:55024329-55024348 | Msa0299800:intron | 35.0% | |
| ! | TTAACTACTCACTTTAGAGG+AGG | - | chr2_3:55024392-55024411 | None:intergenic | 35.0% |
| TATGCACAACAAATCATGGA+TGG | - | chr2_3:55024445-55024464 | None:intergenic | 35.0% | |
| !! | TTGATTTGTTTATCGACGGT+TGG | + | chr2_3:55024483-55024502 | Msa0299800:intron | 35.0% |
| TCAGGTAAAAATATCTCTGC+AGG | - | chr2_3:55024691-55024710 | None:intergenic | 35.0% | |
| TCTTGTATATCGCTAAATCC+TGG | + | chr2_3:55024873-55024892 | Msa0299800:CDS | 35.0% | |
| TTCCGATTTATGGTATTTCG+AGG | + | chr2_3:55025026-55025045 | Msa0299800:intron | 35.0% | |
| TCCGATTTATGGTATTTCGA+GGG | + | chr2_3:55025027-55025046 | Msa0299800:intron | 35.0% | |
| ATTTCAGCTGAACTAAACCT+CGG | - | chr2_3:55025129-55025148 | None:intergenic | 35.0% | |
| TTCAGCTGAAATGGATAAAC+AGG | + | chr2_3:55025137-55025156 | Msa0299800:CDS | 35.0% | |
| !! | TTGCCTTACTTTTCGTGTTA+TGG | - | chr2_3:55025235-55025254 | None:intergenic | 35.0% |
| CTAGGTTGTCAGAAAAAACT+TGG | - | chr2_3:55025281-55025300 | None:intergenic | 35.0% | |
| AAAATTGCAAGAGGCTTACT+AGG | - | chr2_3:55025299-55025318 | None:intergenic | 35.0% | |
| !! | CATTGGTGTCATCAAATCCT+TGG | + | chr2_3:55019527-55019546 | Msa0299800:CDS | 40.0% |
| TGGCGAATTGGAATTGGAAT+TGG | - | chr2_3:55019623-55019642 | None:intergenic | 40.0% | |
| ! | GTTGTTGTTGTTGTTGAGAG+TGG | - | chr2_3:55019643-55019662 | None:intergenic | 40.0% |
| CTGTTGTCTCCTTACAAGAA+TGG | + | chr2_3:55019683-55019702 | Msa0299800:CDS | 40.0% | |
| CTTACAAGAATGGCAAGGTT+GGG | + | chr2_3:55019693-55019712 | Msa0299800:CDS | 40.0% | |
| TTACAAGAATGGCAAGGTTG+GGG | + | chr2_3:55019694-55019713 | Msa0299800:CDS | 40.0% | |
| ACTCACTTGTAACTTTCCAC+CGG | - | chr2_3:55019815-55019834 | None:intergenic | 40.0% | |
| !!! | ATCCTGGATTAGTCGGTTTT+AGG | - | chr2_3:55019875-55019894 | None:intergenic | 40.0% |
| ! | CAAATAGCTTGTCGTGTACT+TGG | + | chr2_3:55020077-55020096 | Msa0299800:intron | 40.0% |
| AAGTGTCAGTCCTACACAAA+TGG | + | chr2_3:55020479-55020498 | Msa0299800:intron | 40.0% | |
| TATTCCAGGAAAGAGCAAAG+AGG | - | chr2_3:55020625-55020644 | None:intergenic | 40.0% | |
| ! | ACAACACTGGAAAGCTTTTG+TGG | + | chr2_3:55020794-55020813 | Msa0299800:CDS | 40.0% |
| ! | GCTTTTGTGGCAAGTTTTTG+GGG | + | chr2_3:55020807-55020826 | Msa0299800:CDS | 40.0% |
| TGTGCAACTTTGTGCCTTTA+TGG | + | chr2_3:55020835-55020854 | Msa0299800:CDS | 40.0% | |
| CATGTTCAGGAATGCCATAA+AGG | - | chr2_3:55020852-55020871 | None:intergenic | 40.0% | |
| TGGAATTCCTTTAAACTGGC+AGG | + | chr2_3:55020883-55020902 | Msa0299800:CDS | 40.0% | |
| ACGGACACTAGTTGAAATGA+AGG | - | chr2_3:55021137-55021156 | None:intergenic | 40.0% | |
| TCAACTAGTGTCCGTTACTT+AGG | + | chr2_3:55021142-55021161 | Msa0299800:intron | 40.0% | |
| AAAACCCACGACCTAAGTAA+CGG | - | chr2_3:55021156-55021175 | None:intergenic | 40.0% | |
| ! | GTGGGTTTTTACCTTGATTC+AGG | + | chr2_3:55021167-55021186 | Msa0299800:intron | 40.0% |
| CAGCATTCTTGTTGGGATAA+AGG | - | chr2_3:55021211-55021230 | None:intergenic | 40.0% | |
| !! | TCCCAACAAGAATGCTGTTT+TGG | + | chr2_3:55021214-55021233 | Msa0299800:CDS | 40.0% |
| AGAGTTCAATCTTGAGGAGA+AGG | + | chr2_3:55021398-55021417 | Msa0299800:intron | 40.0% | |
| !! | TTGAGGAGAAGGTTGTTTTG+AGG | + | chr2_3:55021409-55021428 | Msa0299800:intron | 40.0% |
| TATTGTGAAGGAGAAACCCT+TGG | + | chr2_3:55021602-55021621 | Msa0299800:intron | 40.0% | |
| GAGATATATCTCTCCTCCAA+GGG | - | chr2_3:55021621-55021640 | None:intergenic | 40.0% | |
| AGAGATATATCTCTCCTCCA+AGG | - | chr2_3:55021622-55021641 | None:intergenic | 40.0% | |
| !! | GCTTCAAGGTACATTTTGAC+AGG | - | chr2_3:55021699-55021718 | None:intergenic | 40.0% |
| !! | ATACATGCATTGATTGCTGC+AGG | - | chr2_3:55021881-55021900 | None:intergenic | 40.0% |
| TGTATCTCTTGTGAAGTCAG+TGG | + | chr2_3:55021938-55021957 | Msa0299800:intron | 40.0% | |
| GCAATTCAGCAGCAATGTTT+AGG | + | chr2_3:55022131-55022150 | Msa0299800:CDS | 40.0% | |
| CTAATCACCAATCATGGAGT+AGG | - | chr2_3:55022253-55022272 | None:intergenic | 40.0% | |
| ! | CTACTCCATGATTGGTGATT+AGG | + | chr2_3:55022251-55022270 | Msa0299800:intron | 40.0% |
| AATGACAATACGGTAGGATG+TGG | + | chr2_3:55022460-55022479 | Msa0299800:intron | 40.0% | |
| AAGTATTCACATAGCCCTCA+AGG | + | chr2_3:55022590-55022609 | Msa0299800:intron | 40.0% | |
| AGTATTCACATAGCCCTCAA+GGG | + | chr2_3:55022591-55022610 | Msa0299800:intron | 40.0% | |
| TCTTTCCTTTCTACCCTTGA+GGG | - | chr2_3:55022607-55022626 | None:intergenic | 40.0% | |
| ATCTTTCCTTTCTACCCTTG+AGG | - | chr2_3:55022608-55022627 | None:intergenic | 40.0% | |
| TCAAGGGTAGAAAGGAAAGA+TGG | + | chr2_3:55022607-55022626 | Msa0299800:intron | 40.0% | |
| TGAAAGGAGAATGCTCCTTT+GGG | + | chr2_3:55022673-55022692 | Msa0299800:intron | 40.0% | |
| TACTAAAGAGTGAAGGATGG+TGG | + | chr2_3:55023079-55023098 | Msa0299800:intron | 40.0% | |
| ACTAAAGAGTGAAGGATGGT+GGG | + | chr2_3:55023080-55023099 | Msa0299800:intron | 40.0% | |
| CTTCATCTTGTTGGTCAGTT+GGG | + | chr2_3:55023173-55023192 | Msa0299800:intron | 40.0% | |
| GTTTGCGAGTTCGATTATGT+TGG | + | chr2_3:55023238-55023257 | Msa0299800:intron | 40.0% | |
| TTCGATTATGTTGGGAGCTA+TGG | + | chr2_3:55023247-55023266 | Msa0299800:intron | 40.0% | |
| TCGATTATGTTGGGAGCTAT+GGG | + | chr2_3:55023248-55023267 | Msa0299800:intron | 40.0% | |
| !! | CCGCTTTTCTCCTTTATAGA+TGG | + | chr2_3:55023290-55023309 | Msa0299800:intron | 40.0% |
| CCACATGAACCCATCTATAA+AGG | - | chr2_3:55023303-55023322 | None:intergenic | 40.0% | |
| ! | CCTTTATAGATGGGTTCATG+TGG | + | chr2_3:55023300-55023319 | Msa0299800:intron | 40.0% |
| !! | TCTGTTGAGTTGAACAACTG+AGG | + | chr2_3:55023336-55023355 | Msa0299800:intron | 40.0% |
| ATTGTACGAGTCTATGCAAG+TGG | + | chr2_3:55023485-55023504 | Msa0299800:intron | 40.0% | |
| ACTTGAGAATTTGACAACCG+TGG | + | chr2_3:55023591-55023610 | Msa0299800:intron | 40.0% | |
| TGATCCGTGATTGACAATAC+TGG | + | chr2_3:55023829-55023848 | Msa0299800:intron | 40.0% | |
| TGTATTCTCATTTGCTCCGT+TGG | + | chr2_3:55023973-55023992 | Msa0299800:intron | 40.0% | |
| GTATTCTCATTTGCTCCGTT+GGG | + | chr2_3:55023974-55023993 | Msa0299800:intron | 40.0% | |
| GTTCAAACATAATGGCCCAA+CGG | - | chr2_3:55023992-55024011 | None:intergenic | 40.0% | |
| CGCATATGCACAACAAATCA+TGG | - | chr2_3:55024449-55024468 | None:intergenic | 40.0% | |
| TTAGGATGAAAAGGCCTATG+TGG | + | chr2_3:55024573-55024592 | Msa0299800:intron | 40.0% | |
| AATGTTGTACAAGGCCACAT+AGG | - | chr2_3:55024590-55024609 | None:intergenic | 40.0% | |
| AGGATCAAGCGAAGTCAATT+TGG | + | chr2_3:55024835-55024854 | Msa0299800:intron | 40.0% | |
| GGATCAAGCGAAGTCAATTT+GGG | + | chr2_3:55024836-55024855 | Msa0299800:intron | 40.0% | |
| GATCAAGCGAAGTCAATTTG+GGG | + | chr2_3:55024837-55024856 | Msa0299800:CDS | 40.0% | |
| GCCCTCGAAATACCATAAAT+CGG | - | chr2_3:55025031-55025050 | None:intergenic | 40.0% | |
| ATTTATGGTATTTCGAGGGC+AGG | + | chr2_3:55025031-55025050 | Msa0299800:intron | 40.0% | |
| ! | GAGGTTTAGTTCAGCTGAAA+TGG | + | chr2_3:55025128-55025147 | Msa0299800:CDS | 40.0% |
| ACAAAGAGACGACTTCGAAT+GGG | + | chr2_3:55025204-55025223 | Msa0299800:CDS | 40.0% | |
| GGTCCATAACACGAAAAGTA+AGG | + | chr2_3:55025229-55025248 | Msa0299800:intron | 40.0% | |
| ! | TACAGAGGCTTCAAGTTTCA+AGG | + | chr2_3:55025400-55025419 | Msa0299800:intron | 40.0% |
| AGGAAAAAGGCTCTTGTCCA+AGG | - | chr2_3:55019547-55019566 | None:intergenic | 45.0% | |
| TGAGAGTGGCGAATTGGAAT+TGG | - | chr2_3:55019629-55019648 | None:intergenic | 45.0% | |
| TGTTGTTGAGAGTGGCGAAT+TGG | - | chr2_3:55019635-55019654 | None:intergenic | 45.0% | |
| GTCTCCTTACAAGAATGGCA+AGG | + | chr2_3:55019688-55019707 | Msa0299800:CDS | 45.0% | |
| CCAACCTTGCCATTCTTGTA+AGG | - | chr2_3:55019695-55019714 | None:intergenic | 45.0% | |
| CCTTACAAGAATGGCAAGGT+TGG | + | chr2_3:55019692-55019711 | Msa0299800:CDS | 45.0% | |
| AACATCACCAGTTCCAGCTA+TGG | + | chr2_3:55019720-55019739 | Msa0299800:CDS | 45.0% | |
| !! | CCGACTAATCCTGGATTAGT+CGG | - | chr2_3:55019882-55019901 | None:intergenic | 45.0% |
| ! | CCGACTAATCCAGGATTAGT+CGG | + | chr2_3:55019879-55019898 | Msa0299800:intron | 45.0% |
| !! | ATCCAGGATTAGTCGGTTCT+TGG | + | chr2_3:55019886-55019905 | Msa0299800:intron | 45.0% |
| !! | TCCAGGATTAGTCGGTTCTT+GGG | + | chr2_3:55019887-55019906 | Msa0299800:intron | 45.0% |
| GGCCGGATATTGAGTAATGT+TGG | + | chr2_3:55019908-55019927 | Msa0299800:intron | 45.0% | |
| !! | GAAGCACCGTGCAACTTATA+AGG | + | chr2_3:55020010-55020029 | Msa0299800:intron | 45.0% |
| ! | TGTCGTGTACTTGGTAGCAA+AGG | + | chr2_3:55020086-55020105 | Msa0299800:intron | 45.0% |
| GCAGCAACAACCATTTGTGT+AGG | - | chr2_3:55020492-55020511 | None:intergenic | 45.0% | |
| TTGTTGCTGCTGCTGAGTAA+TGG | + | chr2_3:55020502-55020521 | Msa0299800:intron | 45.0% | |
| !! | TTTGTAGTGCTGGCTTGCTA+TGG | + | chr2_3:55020572-55020591 | Msa0299800:intron | 45.0% |
| ACATCCTCTTTGCTCTTTCC+TGG | + | chr2_3:55020618-55020637 | Msa0299800:CDS | 45.0% | |
| TGAGAGACCTGCCAGTTTAA+AGG | - | chr2_3:55020893-55020912 | None:intergenic | 45.0% | |
| !!! | AGGAGAAGGTTGTTTTGAGG+AGG | + | chr2_3:55021412-55021431 | Msa0299800:intron | 45.0% |
| !!! | GGAGAAGGTTGTTTTGAGGA+GGG | + | chr2_3:55021413-55021432 | Msa0299800:intron | 45.0% |
| !!! | GAGAAGGTTGTTTTGAGGAG+GGG | + | chr2_3:55021414-55021433 | Msa0299800:intron | 45.0% |
| AGGACAAGCAGAAGGTTGTT+AGG | + | chr2_3:55021453-55021472 | Msa0299800:intron | 45.0% | |
| GAGTAGCGACTCTATTGTGA+AGG | + | chr2_3:55021590-55021609 | Msa0299800:intron | 45.0% | |
| TTCACCCAGAAGTTACCTGA+AGG | - | chr2_3:55022159-55022178 | None:intergenic | 45.0% | |
| TAGTGACTAGGGAATGCTCT+AGG | + | chr2_3:55022649-55022668 | Msa0299800:intron | 45.0% | |
| AGTGACTAGGGAATGCTCTA+GGG | + | chr2_3:55022650-55022669 | Msa0299800:intron | 45.0% | |
| GTGAAAGGAGAATGCTCCTT+TGG | + | chr2_3:55022672-55022691 | Msa0299800:intron | 45.0% | |
| GAAAGGAGAATGCTCCTTTG+GGG | + | chr2_3:55022674-55022693 | Msa0299800:intron | 45.0% | |
| AAAGGAGAATGCTCCTTTGG+GGG | + | chr2_3:55022675-55022694 | Msa0299800:intron | 45.0% | |
| AGATGATAACCCTGCACACA+AGG | - | chr2_3:55022704-55022723 | None:intergenic | 45.0% | |
| AGATTCAACTCGGTAGAGCT+AGG | + | chr2_3:55023126-55023145 | Msa0299800:intron | 45.0% | |
| CCAACTGACCAACAAGATGA+AGG | - | chr2_3:55023175-55023194 | None:intergenic | 45.0% | |
| CCTTCATCTTGTTGGTCAGT+TGG | + | chr2_3:55023172-55023191 | Msa0299800:intron | 45.0% | |
| CGATTATGTTGGGAGCTATG+GGG | + | chr2_3:55023249-55023268 | Msa0299800:intron | 45.0% | |
| !! | GGTTGATGTTTTGTGCACTG+TGG | + | chr2_3:55023357-55023376 | Msa0299800:intron | 45.0% |
| TAGGCATATCTGGGGGAAAA+TGG | + | chr2_3:55023440-55023459 | Msa0299800:intron | 45.0% | |
| ! | TAATCTTTTCCCAGCTTGCG+AGG | - | chr2_3:55024263-55024282 | None:intergenic | 45.0% |
| GAAGTCAATTTGGGGAGATG+AGG | + | chr2_3:55024845-55024864 | Msa0299800:CDS | 45.0% | |
| !! | TTATGCATGGCAGAAGTACC+AGG | - | chr2_3:55024894-55024913 | None:intergenic | 45.0% |
| CTTCTGCCATGCATAAACTC+AGG | + | chr2_3:55024898-55024917 | Msa0299800:CDS | 45.0% | |
| CTCTCACCTGAGTTTATGCA+TGG | - | chr2_3:55024907-55024926 | None:intergenic | 45.0% | |
| AACTAAACCTCGGAAGTAGG+TGG | - | chr2_3:55025119-55025138 | None:intergenic | 45.0% | |
| CTGAACTAAACCTCGGAAGT+AGG | - | chr2_3:55025122-55025141 | None:intergenic | 45.0% | |
| CACAAAGAGACGACTTCGAA+TGG | + | chr2_3:55025203-55025222 | Msa0299800:CDS | 45.0% | |
| CAGATGAAATTTGGTCGCGC+CGG | + | chr2_3:55019793-55019812 | Msa0299800:intron | 50.0% | |
| GGCCTAAAACCGACTAATCC+AGG | + | chr2_3:55019870-55019889 | Msa0299800:intron | 50.0% | |
| !! | TGCATGTGTCGGTCTCGTTT+TGG | + | chr2_3:55020434-55020453 | Msa0299800:intron | 50.0% |
| CTGCTGCTGAGTAATGGTTG+TGG | + | chr2_3:55020508-55020527 | Msa0299800:intron | 50.0% | |
| AGTGTCCGTTACTTAGGTCG+TGG | + | chr2_3:55021148-55021167 | Msa0299800:intron | 50.0% | |
| GTGTCCGTTACTTAGGTCGT+GGG | + | chr2_3:55021149-55021168 | Msa0299800:intron | 50.0% | |
| TGTGAAGGAGAAACCCTTGG+AGG | + | chr2_3:55021605-55021624 | Msa0299800:intron | 50.0% | |
| AGCAATGTTTAGGCGCCTTC+AGG | + | chr2_3:55022141-55022160 | Msa0299800:CDS | 50.0% | |
| GGGCACCTAATCACCAATCA+TGG | - | chr2_3:55022259-55022278 | None:intergenic | 50.0% | |
| ! | TGATTGGTGATTAGGTGCCC+AGG | + | chr2_3:55022259-55022278 | Msa0299800:intron | 50.0% |
| CATAGCCCTCAAGGGTAGAA+AGG | + | chr2_3:55022599-55022618 | Msa0299800:intron | 50.0% | |
| !! | AGGGAATGCTCTAGGGTGAA+AGG | + | chr2_3:55022657-55022676 | Msa0299800:intron | 50.0% |
| TTGAATCTAGCCCCAACGAG+GGG | - | chr2_3:55023114-55023133 | None:intergenic | 50.0% | |
| GTTGAATCTAGCCCCAACGA+GGG | - | chr2_3:55023115-55023134 | None:intergenic | 50.0% | |
| AGTTGAATCTAGCCCCAACG+AGG | - | chr2_3:55023116-55023135 | None:intergenic | 50.0% | |
| CGTTGGGGCTAGATTCAACT+CGG | + | chr2_3:55023116-55023135 | Msa0299800:intron | 50.0% | |
| GTACATGTGCGATCCCAAGA+TGG | - | chr2_3:55025063-55025082 | None:intergenic | 50.0% | |
| AGAGACGACTTCGAATGGGA+AGG | + | chr2_3:55025208-55025227 | Msa0299800:CDS | 50.0% | |
| GACAACAGCGTCGTCGTTCA+TGG | - | chr2_3:55019671-55019690 | None:intergenic | 55.0% | |
| TGGGTGACCATAGCTGGAAC+TGG | - | chr2_3:55019730-55019749 | None:intergenic | 55.0% | |
| ! | GCGATTTGGGTGACCATAGC+TGG | - | chr2_3:55019736-55019755 | None:intergenic | 55.0% |
| ATGAAATTTGGTCGCGCCGG+TGG | + | chr2_3:55019796-55019815 | Msa0299800:intron | 55.0% | |
| GCCCAAGAACCGACTAATCC+TGG | - | chr2_3:55019891-55019910 | None:intergenic | 55.0% | |
| !! | GGATTAGTCGGTTCTTGGGC+CGG | + | chr2_3:55019891-55019910 | Msa0299800:intron | 55.0% |
| AGGCGCCTTCAGGTAACTTC+TGG | + | chr2_3:55022151-55022170 | Msa0299800:intron | 55.0% | |
| GGCGCCTTCAGGTAACTTCT+GGG | + | chr2_3:55022152-55022171 | Msa0299800:intron | 55.0% | |
| !! | AGAGTGAAGGATGGTGGGAC+TGG | + | chr2_3:55023085-55023104 | Msa0299800:intron | 55.0% |
| !! | GAGTGAAGGATGGTGGGACT+GGG | + | chr2_3:55023086-55023105 | Msa0299800:intron | 55.0% |
| !! | ATTTTGGCAGCCTCGCAAGC+TGG | + | chr2_3:55024250-55024269 | Msa0299800:intron | 55.0% |
| ! | TTTTGGCAGCCTCGCAAGCT+GGG | + | chr2_3:55024251-55024270 | Msa0299800:intron | 55.0% |
| GTGCGATCCCAAGATGGTTG+AGG | - | chr2_3:55025057-55025076 | None:intergenic | 55.0% | |
| GCACACAAGGCTACCCCCAA+AGG | - | chr2_3:55022691-55022710 | None:intergenic | 60.0% | |
| !! | TTGGGGGTAGCCTTGTGTGC+AGG | + | chr2_3:55022691-55022710 | Msa0299800:intron | 60.0% |
| !! | TGGGGGTAGCCTTGTGTGCA+GGG | + | chr2_3:55022692-55022711 | Msa0299800:intron | 60.0% |
| AGGGCAGGCCTCAACCATCT+TGG | + | chr2_3:55025046-55025065 | Msa0299800:intron | 60.0% | |
| GGGCAGGCCTCAACCATCTT+GGG | + | chr2_3:55025047-55025066 | Msa0299800:intron | 60.0% | |
| GTAGGTGGAGCTCCAAGAGC+AGG | - | chr2_3:55025104-55025123 | None:intergenic | 60.0% | |
| TGGAGCTCCACCTACTTCCG+AGG | + | chr2_3:55025109-55025128 | Msa0299800:CDS | 60.0% | |
| TGGGACTGGGTTCCCCTCGT+TGG | + | chr2_3:55023099-55023118 | Msa0299800:intron | 65.0% | |
| GGGACTGGGTTCCCCTCGTT+GGG | + | chr2_3:55023100-55023119 | Msa0299800:intron | 65.0% | |
| GGACTGGGTTCCCCTCGTTG+GGG | + | chr2_3:55023101-55023120 | Msa0299800:intron | 65.0% | |
| TGTACAGCAGCCGCTGCTGC+TGG | + | chr2_3:55025078-55025097 | Msa0299800:CDS | 65.0% | |
| CAAGAGCAGGCCAGCAGCAG+CGG | - | chr2_3:55025091-55025110 | None:intergenic | 65.0% | |
| ! | CGCTGCTGCTGGCCTGCTCT+TGG | + | chr2_3:55025089-55025108 | Msa0299800:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 55019517 | 55025431 | 55019517 | ID=Msa0299800;Name=Msa0299800 |
| chr2_3 | mRNA | 55019517 | 55025431 | 55019517 | ID=Msa0299800-mRNA-1;Parent=Msa0299800;Name=Msa0299800-mRNA-1;_AED=0.25;_eAED=0.26;_QI=0|0.71|0.62|1|0.85|1|8|0|312 |
| chr2_3 | exon | 55019517 | 55019741 | 55019517 | ID=Msa0299800-mRNA-1:exon:17528;Parent=Msa0299800-mRNA-1 |
| chr2_3 | exon | 55020579 | 55020671 | 55020579 | ID=Msa0299800-mRNA-1:exon:17529;Parent=Msa0299800-mRNA-1 |
| chr2_3 | exon | 55020778 | 55020904 | 55020778 | ID=Msa0299800-mRNA-1:exon:17530;Parent=Msa0299800-mRNA-1 |
| chr2_3 | exon | 55021189 | 55021298 | 55021189 | ID=Msa0299800-mRNA-1:exon:17531;Parent=Msa0299800-mRNA-1 |
| chr2_3 | exon | 55022082 | 55022162 | 55022082 | ID=Msa0299800-mRNA-1:exon:17532;Parent=Msa0299800-mRNA-1 |
| chr2_3 | exon | 55024837 | 55024919 | 55024837 | ID=Msa0299800-mRNA-1:exon:17533;Parent=Msa0299800-mRNA-1 |
| chr2_3 | exon | 55025053 | 55025245 | 55025053 | ID=Msa0299800-mRNA-1:exon:17534;Parent=Msa0299800-mRNA-1 |
| chr2_3 | exon | 55025405 | 55025431 | 55025405 | ID=Msa0299800-mRNA-1:exon:17535;Parent=Msa0299800-mRNA-1 |
| chr2_3 | CDS | 55019517 | 55019741 | 55019517 | ID=Msa0299800-mRNA-1:cds;Parent=Msa0299800-mRNA-1 |
| chr2_3 | CDS | 55020579 | 55020671 | 55020579 | ID=Msa0299800-mRNA-1:cds;Parent=Msa0299800-mRNA-1 |
| chr2_3 | CDS | 55020778 | 55020904 | 55020778 | ID=Msa0299800-mRNA-1:cds;Parent=Msa0299800-mRNA-1 |
| chr2_3 | CDS | 55021189 | 55021298 | 55021189 | ID=Msa0299800-mRNA-1:cds;Parent=Msa0299800-mRNA-1 |
| chr2_3 | CDS | 55022082 | 55022162 | 55022082 | ID=Msa0299800-mRNA-1:cds;Parent=Msa0299800-mRNA-1 |
| chr2_3 | CDS | 55024837 | 55024919 | 55024837 | ID=Msa0299800-mRNA-1:cds;Parent=Msa0299800-mRNA-1 |
| chr2_3 | CDS | 55025053 | 55025245 | 55025053 | ID=Msa0299800-mRNA-1:cds;Parent=Msa0299800-mRNA-1 |
| chr2_3 | CDS | 55025405 | 55025431 | 55025405 | ID=Msa0299800-mRNA-1:cds;Parent=Msa0299800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
