Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0300100 | KEH39177.1 | 42.857 | 147 | 65 | 3 | 58 | 186 | 128 | 273 | 3.80e-11 | 75.9 |
Msa0300100 | KEH39177.1 | 43.931 | 173 | 86 | 2 | 25 | 186 | 150 | 322 | 1.52e-19 | 100 |
Msa0300100 | KEH39177.1 | 72.699 | 326 | 42 | 5 | 1 | 317 | 256 | 543 | 3.77e-134 | 402 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0300100 | sp|O49453|Y4844_ARATH | 61.345 | 119 | 43 | 2 | 194 | 310 | 28 | 145 | 4.17e-40 | 140 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0300100 | A0A072VBJ8 | 42.857 | 147 | 65 | 3 | 58 | 186 | 128 | 273 | 1.81e-11 | 75.9 |
Msa0300100 | A0A072VBJ8 | 43.931 | 173 | 86 | 2 | 25 | 186 | 150 | 322 | 7.26e-20 | 100 |
Msa0300100 | A0A072VBJ8 | 72.699 | 326 | 42 | 5 | 1 | 317 | 256 | 543 | 1.80e-134 | 402 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0225160 | Msa0300100 | 0.904520 | 1.125934e-79 | -8.615850e-47 |
Msa0262320 | Msa0300100 | 0.842884 | 1.968755e-58 | -8.615850e-47 |
Msa0300100 | Msa0337640 | 0.878144 | 3.562160e-69 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0300100 | MtrunA17_Chr2g0324821 | 70.940 | 117 | 33 | 1 | 194 | 310 | 18 | 133 | 4.86e-52 | 168 |
Msa0300100 | MtrunA17_Chr2g0325861 | 56.021 | 191 | 70 | 1 | 1 | 191 | 421 | 597 | 3.56e-49 | 175 |
Msa0300100 | MtrunA17_Chr2g0325861 | 51.075 | 186 | 91 | 0 | 1 | 186 | 337 | 522 | 4.61e-37 | 140 |
Msa0300100 | MtrunA17_Chr2g0325861 | 35.333 | 300 | 150 | 7 | 1 | 280 | 463 | 738 | 1.90e-28 | 115 |
Msa0300100 | MtrunA17_Chr2g0325861 | 43.448 | 145 | 82 | 0 | 42 | 186 | 294 | 438 | 5.70e-17 | 81.6 |
Msa0300100 | MtrunA17_Chr2g0325361 | 54.545 | 198 | 82 | 2 | 1 | 191 | 478 | 674 | 1.62e-46 | 168 |
Msa0300100 | MtrunA17_Chr2g0325361 | 48.611 | 216 | 69 | 4 | 1 | 188 | 562 | 763 | 2.32e-38 | 144 |
Msa0300100 | MtrunA17_Chr2g0325361 | 47.849 | 186 | 97 | 0 | 1 | 186 | 520 | 705 | 4.93e-37 | 140 |
Msa0300100 | MtrunA17_Chr2g0325361 | 44.498 | 209 | 91 | 3 | 3 | 186 | 420 | 628 | 9.26e-33 | 128 |
Msa0300100 | MtrunA17_Chr2g0325361 | 41.667 | 204 | 87 | 2 | 15 | 186 | 320 | 523 | 5.44e-29 | 117 |
Msa0300100 | MtrunA17_Chr2g0325361 | 36.364 | 187 | 105 | 1 | 13 | 185 | 262 | 448 | 1.68e-18 | 86.3 |
Msa0300100 | MtrunA17_Chr2g0325361 | 30.892 | 314 | 173 | 8 | 1 | 287 | 604 | 900 | 8.50e-17 | 81.3 |
Msa0300100 | MtrunA17_Chr2g0325361 | 40.000 | 160 | 88 | 2 | 42 | 194 | 263 | 421 | 1.03e-14 | 75.1 |
Msa0300100 | MtrunA17_Chr2g0325691 | 56.216 | 185 | 80 | 1 | 2 | 186 | 307 | 490 | 1.75e-43 | 158 |
Msa0300100 | MtrunA17_Chr2g0325691 | 47.170 | 212 | 100 | 3 | 6 | 206 | 223 | 433 | 4.63e-32 | 125 |
Msa0300100 | MtrunA17_Chr2g0325691 | 42.917 | 240 | 84 | 4 | 1 | 188 | 348 | 586 | 9.78e-31 | 122 |
Msa0300100 | MtrunA17_Chr2g0325691 | 43.662 | 213 | 119 | 1 | 1 | 213 | 518 | 729 | 9.22e-30 | 119 |
Msa0300100 | MtrunA17_Chr2g0325691 | 43.541 | 209 | 107 | 3 | 1 | 206 | 473 | 673 | 7.64e-28 | 114 |
Msa0300100 | MtrunA17_Chr2g0325691 | 38.249 | 217 | 88 | 7 | 17 | 194 | 198 | 407 | 1.05e-16 | 80.9 |
Msa0300100 | MtrunA17_Chr2g0325281 | 49.020 | 204 | 96 | 2 | 1 | 198 | 380 | 581 | 3.02e-41 | 151 |
Msa0300100 | MtrunA17_Chr2g0325281 | 41.579 | 190 | 111 | 0 | 1 | 190 | 254 | 443 | 1.72e-29 | 118 |
Msa0300100 | MtrunA17_Chr2g0325281 | 46.575 | 146 | 64 | 1 | 1 | 146 | 464 | 595 | 6.92e-21 | 93.2 |
Msa0300100 | MtrunA17_Chr2g0325281 | 40.800 | 125 | 60 | 1 | 55 | 179 | 252 | 362 | 3.88e-13 | 70.1 |
Msa0300100 | MtrunA17_Chr2g0325321 | 50.267 | 187 | 93 | 0 | 1 | 187 | 380 | 566 | 7.62e-41 | 151 |
Msa0300100 | MtrunA17_Chr2g0325321 | 39.062 | 192 | 103 | 1 | 13 | 190 | 252 | 443 | 5.18e-22 | 96.7 |
Msa0300100 | MtrunA17_Chr2g0325321 | 47.107 | 121 | 50 | 1 | 1 | 107 | 464 | 584 | 1.67e-17 | 83.2 |
Msa0300100 | MtrunA17_Chr2g0282661 | 57.724 | 123 | 49 | 2 | 190 | 310 | 24 | 145 | 5.46e-39 | 135 |
Msa0300100 | MtrunA17_Chr5g0413571 | 54.676 | 139 | 58 | 2 | 176 | 314 | 1 | 134 | 5.97e-39 | 134 |
Msa0300100 | MtrunA17_Chr7g0235901 | 53.933 | 178 | 78 | 1 | 6 | 179 | 132 | 309 | 6.37e-39 | 139 |
Msa0300100 | MtrunA17_Chr7g0235901 | 40.132 | 152 | 77 | 1 | 1 | 138 | 159 | 310 | 4.08e-18 | 83.2 |
Msa0300100 | MtrunA17_Chr7g0235901 | 47.423 | 97 | 37 | 1 | 1 | 83 | 215 | 311 | 2.71e-13 | 69.3 |
Msa0300100 | MtrunA17_Chr2g0325231 | 48.585 | 212 | 90 | 4 | 1 | 194 | 346 | 556 | 9.53e-36 | 137 |
Msa0300100 | MtrunA17_Chr2g0325231 | 49.761 | 209 | 93 | 3 | 6 | 203 | 221 | 428 | 4.46e-35 | 135 |
Msa0300100 | MtrunA17_Chr2g0325231 | 33.618 | 351 | 171 | 9 | 1 | 292 | 437 | 784 | 1.01e-29 | 119 |
Msa0300100 | MtrunA17_Chr2g0325231 | 32.209 | 326 | 185 | 8 | 1 | 294 | 497 | 818 | 6.89e-27 | 111 |
Msa0300100 | MtrunA17_Chr2g0325231 | 44.094 | 127 | 59 | 3 | 91 | 206 | 222 | 347 | 5.64e-11 | 63.5 |
Msa0300100 | MtrunA17_Chr2g0325641 | 42.353 | 255 | 85 | 4 | 1 | 193 | 29 | 283 | 2.36e-35 | 130 |
Msa0300100 | MtrunA17_Chr2g0325641 | 41.209 | 182 | 102 | 3 | 15 | 194 | 1 | 179 | 1.35e-19 | 87.8 |
Msa0300100 | MtrunA17_Chr2g0325641 | 43.791 | 153 | 79 | 1 | 1 | 146 | 162 | 314 | 1.89e-19 | 87.4 |
Msa0300100 | MtrunA17_Chr2g0325641 | 38.690 | 168 | 89 | 3 | 3 | 156 | 143 | 310 | 1.50e-15 | 76.3 |
Msa0300100 | MtrunA17_Chr2g0325641 | 33.668 | 199 | 109 | 5 | 3 | 186 | 115 | 305 | 1.70e-13 | 70.1 |
Msa0300100 | MtrunA17_Chr2g0325761 | 44.550 | 211 | 101 | 3 | 1 | 202 | 376 | 579 | 3.50e-29 | 117 |
Msa0300100 | MtrunA17_Chr2g0325761 | 39.316 | 234 | 113 | 3 | 1 | 206 | 264 | 496 | 3.16e-25 | 105 |
Msa0300100 | MtrunA17_Chr2g0325761 | 45.625 | 160 | 66 | 2 | 1 | 153 | 446 | 591 | 2.94e-24 | 103 |
Msa0300100 | MtrunA17_Chr2g0325761 | 40.476 | 168 | 93 | 1 | 14 | 181 | 431 | 591 | 3.42e-21 | 94.4 |
Msa0300100 | MtrunA17_Chr2g0325761 | 36.979 | 192 | 101 | 4 | 3 | 175 | 220 | 410 | 2.49e-17 | 82.8 |
Msa0300100 | MtrunA17_Chr5g0416271 | 33.448 | 290 | 140 | 5 | 1 | 289 | 173 | 410 | 2.50e-28 | 114 |
Msa0300100 | MtrunA17_Chr5g0416271 | 38.889 | 144 | 51 | 4 | 86 | 194 | 147 | 288 | 6.97e-12 | 65.9 |
Msa0300100 | MtrunA17_Chr2g0325241 | 36.122 | 263 | 134 | 6 | 17 | 246 | 143 | 404 | 1.79e-26 | 108 |
Msa0300100 | MtrunA17_Chr2g0325241 | 39.157 | 166 | 87 | 1 | 22 | 187 | 120 | 271 | 1.23e-21 | 94.7 |
Msa0300100 | MtrunA17_Chr2g0325221 | 38.500 | 200 | 109 | 1 | 1 | 186 | 313 | 512 | 1.65e-25 | 107 |
Msa0300100 | MtrunA17_Chr2g0325221 | 39.247 | 186 | 105 | 2 | 13 | 191 | 311 | 495 | 1.79e-21 | 95.1 |
Msa0300100 | MtrunA17_Chr2g0325221 | 34.404 | 218 | 119 | 2 | 1 | 194 | 383 | 600 | 6.42e-18 | 84.3 |
Msa0300100 | MtrunA17_Chr2g0325661 | 32.448 | 339 | 161 | 8 | 1 | 289 | 381 | 701 | 1.97e-25 | 106 |
Msa0300100 | MtrunA17_Chr2g0325661 | 39.623 | 212 | 100 | 2 | 1 | 184 | 269 | 480 | 1.64e-22 | 98.2 |
Msa0300100 | MtrunA17_Chr2g0325661 | 32.828 | 198 | 109 | 4 | 3 | 186 | 225 | 412 | 3.83e-13 | 70.1 |
Msa0300100 | MtrunA17_Chr2g0325721 | 49.133 | 173 | 88 | 0 | 1 | 173 | 329 | 501 | 5.38e-25 | 104 |
Msa0300100 | MtrunA17_Chr2g0325721 | 42.105 | 190 | 110 | 0 | 1 | 190 | 287 | 476 | 4.16e-19 | 87.8 |
Msa0300100 | MtrunA17_Chr2g0325721 | 40.000 | 180 | 86 | 4 | 22 | 194 | 280 | 444 | 4.78e-13 | 69.7 |
Msa0300100 | MtrunA17_Chr2g0325711 | 37.327 | 217 | 105 | 3 | 1 | 186 | 279 | 495 | 1.03e-24 | 104 |
Msa0300100 | MtrunA17_Chr2g0325711 | 29.467 | 319 | 180 | 6 | 2 | 285 | 350 | 658 | 3.02e-22 | 97.4 |
Msa0300100 | MtrunA17_Chr2g0325711 | 35.714 | 182 | 110 | 1 | 12 | 186 | 276 | 457 | 4.94e-20 | 90.9 |
Msa0300100 | MtrunA17_Chr2g0325651 | 47.059 | 153 | 71 | 2 | 15 | 160 | 236 | 385 | 1.21e-24 | 102 |
Msa0300100 | MtrunA17_Chr2g0325651 | 40.385 | 156 | 64 | 3 | 43 | 191 | 236 | 369 | 6.23e-17 | 80.9 |
Msa0300100 | MtrunA17_Chr5g0434751 | 38.739 | 222 | 101 | 2 | 1 | 187 | 15 | 236 | 1.54e-24 | 100 |
Msa0300100 | MtrunA17_Chr5g0434751 | 40.860 | 186 | 82 | 3 | 29 | 186 | 1 | 186 | 4.84e-20 | 88.6 |
Msa0300100 | MtrunA17_Chr5g0434751 | 44.366 | 142 | 72 | 1 | 1 | 135 | 127 | 268 | 2.65e-14 | 72.0 |
Msa0300100 | MtrunA17_Chr5g0434751 | 33.010 | 206 | 103 | 2 | 1 | 171 | 57 | 262 | 2.52e-12 | 66.2 |
Msa0300100 | MtrunA17_Chr2g0325701 | 42.697 | 178 | 98 | 1 | 6 | 179 | 234 | 411 | 1.77e-24 | 103 |
Msa0300100 | MtrunA17_Chr2g0325701 | 34.591 | 159 | 89 | 2 | 4 | 162 | 278 | 421 | 3.54e-14 | 73.2 |
Msa0300100 | MtrunA17_Chr2g0325701 | 35.484 | 217 | 113 | 7 | 2 | 195 | 137 | 349 | 1.68e-13 | 70.9 |
Msa0300100 | MtrunA17_Chr2g0280141 | 39.062 | 192 | 110 | 1 | 2 | 186 | 260 | 451 | 6.93e-23 | 99.4 |
Msa0300100 | MtrunA17_Chr2g0280141 | 39.252 | 214 | 102 | 4 | 1 | 186 | 252 | 465 | 7.61e-23 | 99.0 |
Msa0300100 | MtrunA17_Chr2g0280141 | 38.172 | 186 | 114 | 1 | 1 | 186 | 308 | 492 | 2.11e-21 | 94.7 |
Msa0300100 | MtrunA17_Chr2g0280141 | 29.139 | 302 | 177 | 6 | 1 | 281 | 350 | 635 | 4.58e-21 | 94.0 |
Msa0300100 | MtrunA17_Chr2g0280141 | 38.286 | 175 | 86 | 4 | 42 | 195 | 251 | 424 | 2.43e-16 | 79.7 |
Msa0300100 | MtrunA17_Chr6g0476691 | 55.844 | 77 | 34 | 0 | 234 | 310 | 17 | 93 | 4.80e-22 | 89.0 |
Msa0300100 | MtrunA17_Chr2g0325811 | 37.073 | 205 | 105 | 2 | 1 | 181 | 365 | 569 | 2.13e-21 | 94.7 |
Msa0300100 | MtrunA17_Chr2g0325811 | 33.937 | 221 | 100 | 4 | 1 | 190 | 309 | 514 | 4.26e-21 | 94.0 |
Msa0300100 | MtrunA17_Chr2g0325811 | 30.723 | 166 | 73 | 1 | 50 | 173 | 302 | 467 | 3.79e-11 | 63.9 |
Msa0300100 | MtrunA17_Chr2g0325351 | 29.139 | 302 | 178 | 7 | 6 | 289 | 230 | 513 | 1.77e-20 | 92.0 |
Msa0300100 | MtrunA17_Chr2g0325351 | 39.007 | 141 | 54 | 3 | 2 | 110 | 261 | 401 | 8.19e-11 | 62.8 |
Msa0300100 | MtrunA17_Chr6g0471251 | 37.949 | 195 | 86 | 3 | 6 | 186 | 270 | 443 | 1.62e-19 | 89.4 |
Msa0300100 | MtrunA17_Chr6g0471251 | 30.405 | 296 | 145 | 7 | 1 | 281 | 335 | 584 | 1.88e-13 | 70.9 |
Msa0300100 | MtrunA17_Chr2g0325611 | 31.683 | 303 | 172 | 9 | 7 | 289 | 128 | 415 | 7.74e-19 | 87.0 |
Msa0300100 | MtrunA17_Chr8g0365411 | 39.259 | 135 | 44 | 1 | 176 | 310 | 1 | 97 | 1.12e-18 | 79.7 |
Msa0300100 | MtrunA17_Chr2g0325781 | 55.682 | 88 | 35 | 1 | 91 | 174 | 215 | 302 | 4.51e-18 | 83.2 |
Msa0300100 | MtrunA17_Chr2g0325621 | 46.923 | 130 | 69 | 0 | 42 | 171 | 248 | 377 | 7.18e-18 | 84.3 |
Msa0300100 | MtrunA17_Chr2g0325621 | 39.568 | 139 | 84 | 0 | 1 | 139 | 249 | 387 | 3.91e-14 | 73.2 |
Msa0300100 | MtrunA17_Chr2g0325731 | 67.241 | 58 | 19 | 0 | 113 | 170 | 1 | 58 | 4.44e-17 | 74.7 |
Msa0300100 | MtrunA17_Chr2g0325731 | 56.452 | 62 | 27 | 0 | 29 | 90 | 1 | 62 | 6.35e-13 | 63.2 |
Msa0300100 | MtrunA17_Chr2g0325791 | 47.009 | 117 | 58 | 1 | 6 | 118 | 41 | 157 | 1.50e-15 | 76.3 |
Msa0300100 | MtrunA17_Chr2g0325791 | 30.460 | 174 | 104 | 5 | 69 | 229 | 41 | 210 | 5.61e-12 | 65.5 |
Msa0300100 | MtrunA17_Chr2g0325791 | 38.346 | 133 | 77 | 2 | 30 | 158 | 24 | 155 | 5.93e-12 | 65.5 |
Msa0300100 | MtrunA17_Chr2g0325751 | 40.909 | 132 | 71 | 1 | 57 | 188 | 7 | 131 | 1.78e-14 | 70.1 |
Msa0300100 | MtrunA17_Chr2g0325751 | 41.129 | 124 | 66 | 1 | 15 | 138 | 7 | 123 | 1.78e-13 | 67.0 |
Msa0300100 | MtrunA17_Chr2g0325751 | 37.984 | 129 | 73 | 1 | 24 | 152 | 2 | 123 | 8.57e-13 | 65.1 |
Msa0300100 | MtrunA17_Chr2g0325751 | 44.898 | 98 | 54 | 0 | 2 | 99 | 29 | 126 | 5.92e-12 | 62.8 |
Msa0300100 | MtrunA17_Chr2g0325751 | 37.903 | 124 | 70 | 1 | 1 | 124 | 7 | 123 | 3.23e-11 | 60.8 |
Msa0300100 | MtrunA17_Chr2g0333341 | 39.552 | 134 | 66 | 2 | 43 | 176 | 332 | 450 | 1.80e-14 | 73.9 |
Msa0300100 | MtrunA17_Chr2g0333341 | 39.850 | 133 | 65 | 2 | 1 | 133 | 332 | 449 | 6.33e-13 | 69.3 |
Msa0300100 | MtrunA17_Chr5g0438061 | 36.434 | 129 | 66 | 5 | 190 | 316 | 107 | 221 | 1.58e-13 | 68.9 |
Msa0300100 | MtrunA17_Chr2g0325261 | 44.706 | 85 | 47 | 0 | 29 | 113 | 222 | 306 | 3.70e-11 | 63.2 |
Msa0300100 | MtrunA17_Chr2g0325341 | 44.706 | 85 | 47 | 0 | 29 | 113 | 222 | 306 | 3.70e-11 | 63.2 |
Msa0300100 | MtrunA17_Chr5g0438041 | 34.884 | 129 | 66 | 5 | 193 | 316 | 12 | 127 | 8.54e-11 | 58.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0300100 | AT2G33845.1 | 60.976 | 123 | 40 | 2 | 190 | 310 | 59 | 175 | 3.63e-41 | 142 |
Msa0300100 | AT4G28440.1 | 61.345 | 119 | 43 | 2 | 194 | 310 | 28 | 145 | 4.24e-41 | 140 |
Msa0300100 | AT1G23750.1 | 54.167 | 120 | 50 | 2 | 190 | 309 | 16 | 130 | 1.35e-37 | 131 |
Msa0300100 | AT1G03810.1 | 57.851 | 121 | 49 | 1 | 194 | 314 | 25 | 143 | 2.95e-36 | 127 |
Msa0300100 | AT1G10590.2 | 49.640 | 139 | 66 | 2 | 176 | 313 | 1 | 136 | 4.50e-35 | 124 |
Msa0300100 | AT1G10590.1 | 49.640 | 139 | 66 | 2 | 176 | 313 | 1 | 136 | 4.50e-35 | 124 |
Msa0300100 | AT1G10590.3 | 49.286 | 140 | 67 | 2 | 175 | 313 | 14 | 150 | 1.14e-34 | 124 |
Msa0300100 | AT1G23750.2 | 66.667 | 81 | 27 | 0 | 229 | 309 | 13 | 93 | 4.64e-33 | 118 |
Find 133 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTTCATCCGGTCTTCATTT+TGG | 0.147230 | 2_3:-55437495 | None:intergenic |
ATGCAAAGATTAACCTGTTC+TGG | 0.253388 | 2_3:+55439008 | Msa0300100:CDS |
TGGTGTCGAATATTATGATT+AGG | 0.284068 | 2_3:+55436583 | Msa0300100:five_prime_UTR |
TTGATTTAAACTCCTTCATT+TGG | 0.300483 | 2_3:-55437906 | None:intergenic |
TGCTTTCGGTGTGGTCAATA+TGG | 0.314123 | 2_3:+55436648 | Msa0300100:five_prime_UTR |
TCAATACCAGCTCCTTCATT+TGG | 0.329113 | 2_3:-55437423 | None:intergenic |
TCTCTAACTTCAAAACTTGC+AGG | 0.345507 | 2_3:-55439082 | None:intergenic |
TCAAGGATAGGATCAACTTT+GGG | 0.349068 | 2_3:+55436483 | None:intergenic |
CATTTCTAAACAAAAGCATT+TGG | 0.354274 | 2_3:+55436857 | Msa0300100:five_prime_UTR |
GATAGATTTGGATGGATGTT+TGG | 0.365545 | 2_3:+55436563 | Msa0300100:five_prime_UTR |
GGTGTCGAATATTATGATTA+GGG | 0.380228 | 2_3:+55436584 | Msa0300100:five_prime_UTR |
AGAGTGTGTCCATCAGTTCC+TGG | 0.381134 | 2_3:-55437970 | None:intergenic |
GTTGCGAGCTGTGAAGATTA+TGG | 0.381200 | 2_3:-55438118 | None:intergenic |
TCCTTTCAATTGCATCTCTT+CGG | 0.386064 | 2_3:-55437863 | None:intergenic |
TCCCGTCAAGTCCTTCATAT+TGG | 0.391697 | 2_3:-55436623 | None:intergenic |
TGAAAGCAAAATGAAGAAAC+TGG | 0.395480 | 2_3:+55437669 | Msa0300100:CDS |
CTTCACAGCTCGCAACGAAC+AGG | 0.397474 | 2_3:+55438125 | Msa0300100:CDS |
TCGACTCAAGTTCCTTCATT+CGG | 0.398246 | 2_3:-55437076 | None:intergenic |
GATAGATTTGGTGACTGATT+TGG | 0.398420 | 2_3:+55437028 | Msa0300100:five_prime_UTR |
TGAGGCTGGCAGTTGATTGC+CGG | 0.400616 | 2_3:+55439038 | Msa0300100:CDS |
CGGATTTGAGCTCCTCCACC+TGG | 0.402176 | 2_3:-55437843 | None:intergenic |
TGAAGGTCAAGTGATAGATT+TGG | 0.402956 | 2_3:+55437016 | Msa0300100:five_prime_UTR |
TTGAGTCATGCTCCTTCATC+CGG | 0.403682 | 2_3:-55437507 | None:intergenic |
TCGACTCAAGGTCCTTCATT+CGG | 0.407601 | 2_3:-55437214 | None:intergenic |
TGCCTAGTTGGAGACGAAAC+TGG | 0.409862 | 2_3:+55438093 | Msa0300100:CDS |
GACTTGACGGGATATGCTTT+CGG | 0.414906 | 2_3:+55436634 | Msa0300100:five_prime_UTR |
GCCTCATATGTCCCCAGAAC+AGG | 0.421872 | 2_3:-55439021 | None:intergenic |
TAATGTTGAAGGTTGATGAT+AGG | 0.428079 | 2_3:+55436508 | Msa0300100:five_prime_UTR |
GGAAGTAGAGCTATGTTTGA+TGG | 0.432924 | 2_3:+55436764 | Msa0300100:five_prime_UTR |
TCAACTCAAACATCTTCATC+TGG | 0.434798 | 2_3:-55437717 | None:intergenic |
CTCAAGGATAGGATCAACTT+TGG | 0.441059 | 2_3:+55436482 | None:intergenic |
GGCATTCAGCGATGCGGGAG+GGG | 0.443427 | 2_3:-55438074 | None:intergenic |
TTGATCTGTGCTCCTTCACC+CGG | 0.444119 | 2_3:-55437255 | None:intergenic |
TGCAAAGATTAACCTGTTCT+GGG | 0.444397 | 2_3:+55439009 | Msa0300100:CDS |
AGACGGCCATTCATCGCGGC+AGG | 0.444865 | 2_3:-55438034 | None:intergenic |
CATTCACCAGCTCCTTCACT+TGG | 0.448226 | 2_3:-55436884 | None:intergenic |
CGCATCGCTGAATGCCTAGT+TGG | 0.457979 | 2_3:+55438081 | Msa0300100:CDS |
CTCCAATATGAAGGACTTGA+CGG | 0.458749 | 2_3:+55436621 | Msa0300100:five_prime_UTR |
CCTTTGTTTGGCCTTTGAGT+TGG | 0.459817 | 2_3:-55437621 | None:intergenic |
ACCTGTTCTGGGGACATATG+AGG | 0.469408 | 2_3:+55439020 | Msa0300100:CDS |
ACGGCCATTCATCGCGGCAG+GGG | 0.470283 | 2_3:-55438032 | None:intergenic |
TCGATTCATGCTCCTCTACC+CGG | 0.471523 | 2_3:-55437118 | None:intergenic |
TGAAAGTAAAGTGGAGGAGC+TGG | 0.471794 | 2_3:+55437795 | Msa0300100:CDS |
TGAAAGGCAAGTTAAGGAGT+TGG | 0.472552 | 2_3:+55437333 | Msa0300100:five_prime_UTR |
AATATGTGTGGAGATAGATT+TGG | 0.473353 | 2_3:+55436551 | Msa0300100:five_prime_UTR |
ATTGCATTTCTTTCGACTCA+AGG | 0.473853 | 2_3:-55437226 | None:intergenic |
AACTAGGCATTCAGCGATGC+GGG | 0.477868 | 2_3:-55438079 | None:intergenic |
TGAAGTTTGCGAGAAAATGC+AGG | 0.484103 | 2_3:+55436704 | Msa0300100:five_prime_UTR |
GGACAAATTAAAGAATTTGA+AGG | 0.485990 | 2_3:+55437883 | Msa0300100:CDS |
GAGGCTGGCAGTTGATTGCC+GGG | 0.487781 | 2_3:+55439039 | Msa0300100:CDS |
GCAACATGAAGGCCGGGTAG+AGG | 0.489755 | 2_3:+55437106 | Msa0300100:five_prime_UTR |
AGAATTTGAAGGCCAAATGA+AGG | 0.491861 | 2_3:+55437894 | Msa0300100:CDS |
CGCAGAATTACAGTAGCACC+AGG | 0.493091 | 2_3:-55438983 | None:intergenic |
GCAATTCGAGAGCGGAATGA+AGG | 0.499417 | 2_3:+55436926 | Msa0300100:five_prime_UTR |
TGCAATATGAAGCCGGGTGA+AGG | 0.501672 | 2_3:+55437243 | Msa0300100:five_prime_UTR |
TAGAGAATTTGAAAGTAAAG+TGG | 0.505463 | 2_3:+55437786 | Msa0300100:CDS |
CACAAGAAAGGTAATTGTGT+TGG | 0.509056 | 2_3:+55436672 | Msa0300100:five_prime_UTR |
CTGGTTTCAGATCTATCACT+CGG | 0.510842 | 2_3:-55437951 | None:intergenic |
GAAGGAGCTGGTGAATGAAT+TGG | 0.514445 | 2_3:+55436890 | Msa0300100:five_prime_UTR |
AAGAGAAGCAACATGAAGGC+CGG | 0.515329 | 2_3:+55437099 | Msa0300100:five_prime_UTR |
AGAGAAGCAACATGAAGGTC+GGG | 0.518749 | 2_3:+55437741 | Msa0300100:CDS |
CGAGTTAATCTCCAATATGA+AGG | 0.519768 | 2_3:+55436612 | Msa0300100:five_prime_UTR |
AAGGTTGATGATAGGCTAAG+TGG | 0.520158 | 2_3:+55436516 | Msa0300100:five_prime_UTR |
TCAAAGAAGCGAGAATTTGA+AGG | 0.520665 | 2_3:+55437526 | Msa0300100:CDS |
TTCCAGTTTCGTCTCCAACT+AGG | 0.523242 | 2_3:-55438095 | None:intergenic |
TGTTTGATGGAGGACTTGAT+TGG | 0.525108 | 2_3:+55436777 | Msa0300100:five_prime_UTR |
CCAACTTGTAAGTAAAATGA+AGG | 0.525826 | 2_3:+55437369 | Msa0300100:exon |
AGAGAAGCAGCATGAAGGTC+GGG | 0.525926 | 2_3:+55436962 | Msa0300100:five_prime_UTR |
AAAGAAATGCAATATGAAGC+CGG | 0.526151 | 2_3:+55437236 | Msa0300100:five_prime_UTR |
GCTGTTTGAAAGGCAAGTTA+AGG | 0.528403 | 2_3:+55437327 | Msa0300100:five_prime_UTR |
CCAAAATGAAGACCGGATGA+AGG | 0.534699 | 2_3:+55437495 | Msa0300100:CDS |
AGGCATTCAGCGATGCGGGA+GGG | 0.535234 | 2_3:-55438075 | None:intergenic |
TTGACTCAAACAGTTTGACT+TGG | 0.537417 | 2_3:-55437591 | None:intergenic |
GATCTGAAACCAGGAACTGA+TGG | 0.538419 | 2_3:+55437961 | Msa0300100:CDS |
AGAATTCGAAAGCCAAATGA+AGG | 0.543820 | 2_3:+55437411 | Msa0300100:CDS |
GCAGCATGAAGGTCGGGTGA+AGG | 0.550368 | 2_3:+55436968 | Msa0300100:five_prime_UTR |
CTAAACAGAAGCTGTTTGAA+AGG | 0.550931 | 2_3:+55437317 | Msa0300100:five_prime_UTR |
TCCAATATGAAGGACTTGAC+GGG | 0.554496 | 2_3:+55436622 | Msa0300100:five_prime_UTR |
GAAGGTTGGTTGCTGTTCAT+CGG | 0.555268 | 2_3:+55437999 | Msa0300100:CDS |
CGAAAGCCAAATGAAGGAGC+TGG | 0.557116 | 2_3:+55437417 | Msa0300100:CDS |
CGGCCATTCATCGCGGCAGG+GGG | 0.557172 | 2_3:-55438031 | None:intergenic |
AGAATTTGAATGTCAAGTGA+AGG | 0.557857 | 2_3:+55437285 | Msa0300100:five_prime_UTR |
CTGTGAGCTGTATACATCCC+CGG | 0.558440 | 2_3:-55439057 | None:intergenic |
GCATTTCGAAAGTCGAATGA+AGG | 0.559949 | 2_3:+55437453 | Msa0300100:CDS |
TCAAATTATAACCAACTCAA+AGG | 0.560582 | 2_3:+55437610 | Msa0300100:CDS |
AGAGAAGCAACATGAAGGCC+GGG | 0.561927 | 2_3:+55437100 | Msa0300100:five_prime_UTR |
GACGGCCATTCATCGCGGCA+GGG | 0.563301 | 2_3:-55438033 | None:intergenic |
AAGAGAACCAAAATGAAGAC+CGG | 0.565006 | 2_3:+55437488 | Msa0300100:CDS |
AAGAAATGCAATATGAAGCC+GGG | 0.565633 | 2_3:+55437237 | Msa0300100:five_prime_UTR |
AGGACTTGATTGGAGAGTGC+AGG | 0.568670 | 2_3:+55436787 | Msa0300100:five_prime_UTR |
AGGTTGATGATAGGCTAAGT+GGG | 0.570548 | 2_3:+55436517 | Msa0300100:five_prime_UTR |
CGAGTGATAGATCTGAAACC+AGG | 0.572545 | 2_3:+55437952 | Msa0300100:CDS |
TCCGAAGAGATGCAATTGAA+AGG | 0.572726 | 2_3:+55437862 | Msa0300100:CDS |
CTTGATTGGAGAGTGCAGGC+AGG | 0.579042 | 2_3:+55436791 | Msa0300100:five_prime_UTR |
GCAACATGAAGGTCGGGTGA+AGG | 0.579309 | 2_3:+55437747 | Msa0300100:CDS |
TAAGATTGAAGAGTTTGTCG+AGG | 0.580976 | 2_3:+55436728 | Msa0300100:five_prime_UTR |
GGTCAATATGGACACAAGAA+AGG | 0.584743 | 2_3:+55436660 | Msa0300100:five_prime_UTR |
TCGAAAGAGAAGCAACATGA+AGG | 0.592048 | 2_3:+55437095 | Msa0300100:five_prime_UTR |
AAGAGAAGCAACATGAAGGT+CGG | 0.592279 | 2_3:+55437740 | Msa0300100:CDS |
GATGGAGCTTTATCAAGTCA+TGG | 0.592913 | 2_3:+55436830 | Msa0300100:five_prime_UTR |
GTGTCGAATATTATGATTAG+GGG | 0.593607 | 2_3:+55436585 | Msa0300100:five_prime_UTR |
TTGAAAGAGAAGCAACATGA+AGG | 0.594016 | 2_3:+55437736 | Msa0300100:CDS |
GTTCTGGGGACATATGAGGC+TGG | 0.595747 | 2_3:+55439024 | Msa0300100:CDS |
GGAAAGCCAAGTGAAGGAGC+TGG | 0.596353 | 2_3:+55436878 | Msa0300100:five_prime_UTR |
CAAGGATAGGATCAACTTTG+GGG | 0.597510 | 2_3:+55436484 | None:intergenic |
CGAGCTGAAGCTATCAAAGA+CGG | 0.598648 | 2_3:-55438051 | None:intergenic |
AGAATTTGAAGGTCAAGTGA+AGG | 0.598860 | 2_3:+55437537 | Msa0300100:CDS |
AGAATTTGAAAGTAAAGTGG+AGG | 0.600864 | 2_3:+55437789 | Msa0300100:CDS |
GAAGTTTGCGAGAAAATGCA+GGG | 0.605272 | 2_3:+55436705 | Msa0300100:five_prime_UTR |
TAGGCATTCAGCGATGCGGG+AGG | 0.606084 | 2_3:-55438076 | None:intergenic |
AAATCACTCTTCAACGACAT+CGG | 0.606854 | 2_3:-55439147 | None:intergenic |
AAGAGAAGCAGCATGAAGGT+CGG | 0.608292 | 2_3:+55436961 | Msa0300100:five_prime_UTR |
GCATTTGGAAAGCCAAGTGA+AGG | 0.609390 | 2_3:+55436872 | Msa0300100:five_prime_UTR |
TTAAAAGAGAAGCAGCATGA+AGG | 0.610849 | 2_3:+55436957 | Msa0300100:five_prime_UTR |
TTCACAGCTCGCAACGAACA+GGG | 0.612349 | 2_3:+55438126 | Msa0300100:CDS |
CAGTAGCACCAGGTTTCATG+AGG | 0.614066 | 2_3:-55438973 | None:intergenic |
AGAATTTAAAGATCATGTGA+CGG | 0.619537 | 2_3:+55437148 | Msa0300100:five_prime_UTR |
TGAATGTCAAGTGAAGGAGC+AGG | 0.620944 | 2_3:+55437291 | Msa0300100:five_prime_UTR |
CACACTCTGACAGTGAAGGT+TGG | 0.635603 | 2_3:+55437985 | Msa0300100:CDS |
GCAGTGGACCTCATGAAACC+TGG | 0.636118 | 2_3:+55438965 | Msa0300100:intron |
CAACTAGGCATTCAGCGATG+CGG | 0.638058 | 2_3:-55438080 | None:intergenic |
AGTAGAGCTATGTTTGATGG+AGG | 0.642585 | 2_3:+55436767 | Msa0300100:five_prime_UTR |
GACGGGATATGCTTTCGGTG+TGG | 0.660721 | 2_3:+55436639 | Msa0300100:five_prime_UTR |
GCAAAGATTAACCTGTTCTG+GGG | 0.661250 | 2_3:+55439010 | Msa0300100:CDS |
TGTCGAATATTATGATTAGG+GGG | 0.661343 | 2_3:+55436586 | Msa0300100:five_prime_UTR |
AGACAAAAGCAATTCGAGAG+CGG | 0.666493 | 2_3:+55436918 | Msa0300100:five_prime_UTR |
GAAATACGCGAGAATATGTG+TGG | 0.672119 | 2_3:+55436539 | Msa0300100:five_prime_UTR |
TGGACACACTCTGACAGTGA+AGG | 0.677324 | 2_3:+55437981 | Msa0300100:CDS |
TGTGTGGAGATAGATTTGGA+TGG | 0.680421 | 2_3:+55436555 | Msa0300100:five_prime_UTR |
CCAACTCAAAGGCCAAACAA+AGG | 0.684873 | 2_3:+55437621 | Msa0300100:CDS |
AAGGATAGGATCAACTTTGG+GGG | 0.707340 | 2_3:+55436485 | None:intergenic |
AGGCTGGCAGTTGATTGCCG+GGG | 0.718353 | 2_3:+55439040 | Msa0300100:CDS |
TCAAAGACGGCCATTCATCG+CGG | 0.726292 | 2_3:-55438038 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TCAAAAAATAGAGAATTTGA+AGG | + | chr2_3:55436999-55437018 | Msa0300100:five_prime_UTR | 20.0% |
!!! | TAAAACTCGTTGATTTTATA+TGG | + | chr2_3:55438387-55438406 | Msa0300100:intron | 20.0% |
!!! | ACCTAATTTTATGCATATTA+TGG | + | chr2_3:55438444-55438463 | Msa0300100:intron | 20.0% |
!! | TCCATAATATGCATAAAATT+AGG | - | chr2_3:55438448-55438467 | None:intergenic | 20.0% |
!!! | AACATATGGGTTTAATTTAT+CGG | + | chr2_3:55438738-55438757 | Msa0300100:intron | 20.0% |
!!! | CATTTCTAAACAAAAGCATT+TGG | + | chr2_3:55436857-55436876 | Msa0300100:five_prime_UTR | 25.0% |
! | AGAATTTAAAGATCATGTGA+CGG | + | chr2_3:55437148-55437167 | Msa0300100:five_prime_UTR | 25.0% |
! | TCAAATTATAACCAACTCAA+AGG | + | chr2_3:55437610-55437629 | Msa0300100:CDS | 25.0% |
! | TTAAAAAGAACTCCTTTGTT+TGG | - | chr2_3:55437636-55437655 | None:intergenic | 25.0% |
! | TAGAGAATTTGAAAGTAAAG+TGG | + | chr2_3:55437786-55437805 | Msa0300100:CDS | 25.0% |
! | GGACAAATTAAAGAATTTGA+AGG | + | chr2_3:55437883-55437902 | Msa0300100:CDS | 25.0% |
! | TTGATTTAAACTCCTTCATT+TGG | - | chr2_3:55437909-55437928 | None:intergenic | 25.0% |
! | ATGTTCAATTTAAGTGCTAT+TGG | + | chr2_3:55438195-55438214 | Msa0300100:intron | 25.0% |
!!! | GATATGTAATTTGTTGACTT+GGG | + | chr2_3:55438217-55438236 | Msa0300100:intron | 25.0% |
!!! | AAGACTTGAAAGTGTTTTTA+AGG | + | chr2_3:55438280-55438299 | Msa0300100:intron | 25.0% |
! | TACATTTACACAATCAATGA+AGG | - | chr2_3:55438347-55438366 | None:intergenic | 25.0% |
!! | TTCATTGATTGTGTAAATGT+AGG | + | chr2_3:55438346-55438365 | Msa0300100:intron | 25.0% |
! | TATTATTACTGCATTCAAGT+AGG | + | chr2_3:55438477-55438496 | Msa0300100:intron | 25.0% |
! | TAAAGAGTGATATTGTCTTA+TGG | + | chr2_3:55438516-55438535 | Msa0300100:intron | 25.0% |
! | TATTCAGCAGTTAAACATAT+GGG | + | chr2_3:55438725-55438744 | Msa0300100:intron | 25.0% |
!! | TTTAATTTATCGGATGGTAT+AGG | + | chr2_3:55438748-55438767 | Msa0300100:intron | 25.0% |
! | AAAGAACAAAATATGTGCTA+AGG | - | chr2_3:55438878-55438897 | None:intergenic | 25.0% |
!!! | ATTCATTTACTTTTATGCAG+TGG | + | chr2_3:55438949-55438968 | Msa0300100:intron | 25.0% |
!! | TAATGTTGAAGGTTGATGAT+AGG | + | chr2_3:55436508-55436527 | Msa0300100:five_prime_UTR | 30.0% |
AATATGTGTGGAGATAGATT+TGG | + | chr2_3:55436551-55436570 | Msa0300100:five_prime_UTR | 30.0% | |
! | TGGTGTCGAATATTATGATT+AGG | + | chr2_3:55436583-55436602 | Msa0300100:five_prime_UTR | 30.0% |
! | GGTGTCGAATATTATGATTA+GGG | + | chr2_3:55436584-55436603 | Msa0300100:five_prime_UTR | 30.0% |
GTGTCGAATATTATGATTAG+GGG | + | chr2_3:55436585-55436604 | Msa0300100:five_prime_UTR | 30.0% | |
TGTCGAATATTATGATTAGG+GGG | + | chr2_3:55436586-55436605 | Msa0300100:five_prime_UTR | 30.0% | |
GGAATTTGAGAAAAAAGAGA+TGG | + | chr2_3:55436812-55436831 | Msa0300100:five_prime_UTR | 30.0% | |
AAAGAAATGCAATATGAAGC+CGG | + | chr2_3:55437236-55437255 | Msa0300100:five_prime_UTR | 30.0% | |
AGAATTTGAATGTCAAGTGA+AGG | + | chr2_3:55437285-55437304 | Msa0300100:five_prime_UTR | 30.0% | |
! | CCTTCATTTTACTTACAAGT+TGG | - | chr2_3:55437372-55437391 | None:intergenic | 30.0% |
CCAACTTGTAAGTAAAATGA+AGG | + | chr2_3:55437369-55437388 | Msa0300100:exon | 30.0% | |
!! | AGGAGTTCTTTTTAAAAGAG+AGG | + | chr2_3:55437641-55437660 | Msa0300100:CDS | 30.0% |
!! | GGAGTTCTTTTTAAAAGAGA+GGG | + | chr2_3:55437642-55437661 | Msa0300100:CDS | 30.0% |
TGAAAGCAAAATGAAGAAAC+TGG | + | chr2_3:55437669-55437688 | Msa0300100:CDS | 30.0% | |
AGAATTTGAAAGTAAAGTGG+AGG | + | chr2_3:55437789-55437808 | Msa0300100:CDS | 30.0% | |
AAACACAATGCAACAGTTAA+AGG | - | chr2_3:55438175-55438194 | None:intergenic | 30.0% | |
!! | GGATATGTAATTTGTTGACT+TGG | + | chr2_3:55438216-55438235 | Msa0300100:intron | 30.0% |
AAGTCTTAACTGCTTAGAAA+TGG | - | chr2_3:55438267-55438286 | None:intergenic | 30.0% | |
TATGCATAAAATTAGGTCCA+GGG | - | chr2_3:55438441-55438460 | None:intergenic | 30.0% | |
ATATGCATAAAATTAGGTCC+AGG | - | chr2_3:55438442-55438461 | None:intergenic | 30.0% | |
! | CTGGATAAGCTTTATGTAAT+GGG | + | chr2_3:55438581-55438600 | Msa0300100:intron | 30.0% |
TCAATGACATCTAACGAATA+TGG | - | chr2_3:55438697-55438716 | None:intergenic | 30.0% | |
CATATGTTTAACTGCTGAAT+AGG | - | chr2_3:55438726-55438745 | None:intergenic | 30.0% | |
CTATTCAGCAGTTAAACATA+TGG | + | chr2_3:55438724-55438743 | Msa0300100:intron | 30.0% | |
! | TATGGGTTTAATTTATCGGA+TGG | + | chr2_3:55438742-55438761 | Msa0300100:intron | 30.0% |
AAGATAAAATGTAACAGCCA+GGG | - | chr2_3:55438845-55438864 | None:intergenic | 30.0% | |
ACAAAATATGTGCTAAGGAA+TGG | - | chr2_3:55438873-55438892 | None:intergenic | 30.0% | |
!!! | CTTGTTTTTGAAGAGGATAT+CGG | + | chr2_3:55438918-55438937 | Msa0300100:intron | 30.0% |
GATAGATTTGGATGGATGTT+TGG | + | chr2_3:55436563-55436582 | Msa0300100:five_prime_UTR | 35.0% | |
CGAGTTAATCTCCAATATGA+AGG | + | chr2_3:55436612-55436631 | Msa0300100:five_prime_UTR | 35.0% | |
CACAAGAAAGGTAATTGTGT+TGG | + | chr2_3:55436672-55436691 | Msa0300100:five_prime_UTR | 35.0% | |
TAAGATTGAAGAGTTTGTCG+AGG | + | chr2_3:55436728-55436747 | Msa0300100:five_prime_UTR | 35.0% | |
TTAAAAGAGAAGCAGCATGA+AGG | + | chr2_3:55436957-55436976 | Msa0300100:five_prime_UTR | 35.0% | |
TGAAGGTCAAGTGATAGATT+TGG | + | chr2_3:55437016-55437035 | Msa0300100:five_prime_UTR | 35.0% | |
!! | GATAGATTTGGTGACTGATT+TGG | + | chr2_3:55437028-55437047 | Msa0300100:five_prime_UTR | 35.0% |
ATTGCATTTCTTTCGACTCA+AGG | - | chr2_3:55437229-55437248 | None:intergenic | 35.0% | |
AAGAAATGCAATATGAAGCC+GGG | + | chr2_3:55437237-55437256 | Msa0300100:five_prime_UTR | 35.0% | |
CTAAACAGAAGCTGTTTGAA+AGG | + | chr2_3:55437317-55437336 | Msa0300100:five_prime_UTR | 35.0% | |
AGAATTCGAAAGCCAAATGA+AGG | + | chr2_3:55437411-55437430 | Msa0300100:CDS | 35.0% | |
AAGAGAACCAAAATGAAGAC+CGG | + | chr2_3:55437488-55437507 | Msa0300100:CDS | 35.0% | |
TCAAAGAAGCGAGAATTTGA+AGG | + | chr2_3:55437526-55437545 | Msa0300100:CDS | 35.0% | |
AGAATTTGAAGGTCAAGTGA+AGG | + | chr2_3:55437010-55437029 | Msa0300100:five_prime_UTR | 35.0% | |
TTGACTCAAACAGTTTGACT+TGG | - | chr2_3:55437594-55437613 | None:intergenic | 35.0% | |
! | GTGAAAAAGAGACGTTTTGA+AGG | + | chr2_3:55437694-55437713 | Msa0300100:CDS | 35.0% |
TCAACTCAAACATCTTCATC+TGG | - | chr2_3:55437720-55437739 | None:intergenic | 35.0% | |
TTGAAAGAGAAGCAACATGA+AGG | + | chr2_3:55437736-55437755 | Msa0300100:CDS | 35.0% | |
!! | AAAGATGCATTTTGAAAGCC+AGG | + | chr2_3:55437825-55437844 | Msa0300100:CDS | 35.0% |
TCCTTTCAATTGCATCTCTT+CGG | - | chr2_3:55437866-55437885 | None:intergenic | 35.0% | |
AGAATTTGAAGGCCAAATGA+AGG | + | chr2_3:55437894-55437913 | Msa0300100:CDS | 35.0% | |
! | AAAGCGAGAGAATTTTCTGA+AGG | + | chr2_3:55437928-55437947 | Msa0300100:CDS | 35.0% |
TGAAGGACAAAACGTAATCA+TGG | - | chr2_3:55438330-55438349 | None:intergenic | 35.0% | |
TTATGGTTTCTGCCAATGTT+AGG | + | chr2_3:55438533-55438552 | Msa0300100:intron | 35.0% | |
CCATTACATAAAGCTTATCC+AGG | - | chr2_3:55438583-55438602 | None:intergenic | 35.0% | |
! | CCTGGATAAGCTTTATGTAA+TGG | + | chr2_3:55438580-55438599 | Msa0300100:intron | 35.0% |
AACGAATATGGTTAACGCTA+TGG | - | chr2_3:55438685-55438704 | None:intergenic | 35.0% | |
! | ACTATACACCAGCTTTTAAG+TGG | - | chr2_3:55438816-55438835 | None:intergenic | 35.0% |
GAAGATAAAATGTAACAGCC+AGG | - | chr2_3:55438846-55438865 | None:intergenic | 35.0% | |
ATATGTGCTAAGGAATGGAT+TGG | - | chr2_3:55438868-55438887 | None:intergenic | 35.0% | |
!!! | TGTCTTGCTTGTTTTTGAAG+AGG | + | chr2_3:55438911-55438930 | Msa0300100:intron | 35.0% |
ATGCAAAGATTAACCTGTTC+TGG | + | chr2_3:55439008-55439027 | Msa0300100:CDS | 35.0% | |
TGCAAAGATTAACCTGTTCT+GGG | + | chr2_3:55439009-55439028 | Msa0300100:CDS | 35.0% | |
TCTCTAACTTCAAAACTTGC+AGG | - | chr2_3:55439085-55439104 | None:intergenic | 35.0% | |
!!! | TGCAAGTTTTGAAGTTAGAG+AGG | + | chr2_3:55439084-55439103 | Msa0300100:CDS | 35.0% |
! | AACTTTGGGGGTAATGTTGA+AGG | + | chr2_3:55436497-55436516 | Msa0300100:five_prime_UTR | 40.0% |
!! | AAGGTTGATGATAGGCTAAG+TGG | + | chr2_3:55436516-55436535 | Msa0300100:five_prime_UTR | 40.0% |
!! | AGGTTGATGATAGGCTAAGT+GGG | + | chr2_3:55436517-55436536 | Msa0300100:five_prime_UTR | 40.0% |
GAAATACGCGAGAATATGTG+TGG | + | chr2_3:55436539-55436558 | Msa0300100:five_prime_UTR | 40.0% | |
TGTGTGGAGATAGATTTGGA+TGG | + | chr2_3:55436555-55436574 | Msa0300100:five_prime_UTR | 40.0% | |
CTCCAATATGAAGGACTTGA+CGG | + | chr2_3:55436621-55436640 | Msa0300100:five_prime_UTR | 40.0% | |
TCCAATATGAAGGACTTGAC+GGG | + | chr2_3:55436622-55436641 | Msa0300100:five_prime_UTR | 40.0% | |
GGTCAATATGGACACAAGAA+AGG | + | chr2_3:55436660-55436679 | Msa0300100:five_prime_UTR | 40.0% | |
TGAAGTTTGCGAGAAAATGC+AGG | + | chr2_3:55436704-55436723 | Msa0300100:five_prime_UTR | 40.0% | |
GAAGTTTGCGAGAAAATGCA+GGG | + | chr2_3:55436705-55436724 | Msa0300100:five_prime_UTR | 40.0% | |
GGAAGTAGAGCTATGTTTGA+TGG | + | chr2_3:55436764-55436783 | Msa0300100:five_prime_UTR | 40.0% | |
AGTAGAGCTATGTTTGATGG+AGG | + | chr2_3:55436767-55436786 | Msa0300100:five_prime_UTR | 40.0% | |
TGTTTGATGGAGGACTTGAT+TGG | + | chr2_3:55436777-55436796 | Msa0300100:five_prime_UTR | 40.0% | |
! | GATGGAGCTTTATCAAGTCA+TGG | + | chr2_3:55436830-55436849 | Msa0300100:five_prime_UTR | 40.0% |
AGACAAAAGCAATTCGAGAG+CGG | + | chr2_3:55436918-55436937 | Msa0300100:five_prime_UTR | 40.0% | |
!! | GCTGCTTCTCTTTTAACTCA+AGG | - | chr2_3:55436953-55436972 | None:intergenic | 40.0% |
!! | GCATTTTGAAAGCCGAATGA+AGG | + | chr2_3:55437064-55437083 | Msa0300100:five_prime_UTR | 40.0% |
TCGACTCAAGTTCCTTCATT+CGG | - | chr2_3:55437079-55437098 | None:intergenic | 40.0% | |
TCGAAAGAGAAGCAACATGA+AGG | + | chr2_3:55437095-55437114 | Msa0300100:five_prime_UTR | 40.0% | |
!! | GCTTTTTGAAAGCCGAATGA+AGG | + | chr2_3:55437202-55437221 | Msa0300100:five_prime_UTR | 40.0% |
GCTGTTTGAAAGGCAAGTTA+AGG | + | chr2_3:55437327-55437346 | Msa0300100:five_prime_UTR | 40.0% | |
TGAAAGGCAAGTTAAGGAGT+TGG | + | chr2_3:55437333-55437352 | Msa0300100:five_prime_UTR | 40.0% | |
TCAATACCAGCTCCTTCATT+TGG | - | chr2_3:55437426-55437445 | None:intergenic | 40.0% | |
GCATTTCGAAAGTCGAATGA+AGG | + | chr2_3:55437453-55437472 | Msa0300100:CDS | 40.0% | |
AAGAGAAGCAACATGAAGGT+CGG | + | chr2_3:55437740-55437759 | Msa0300100:CDS | 40.0% | |
TCCGAAGAGATGCAATTGAA+AGG | + | chr2_3:55437862-55437881 | Msa0300100:CDS | 40.0% | |
CTGGTTTCAGATCTATCACT+CGG | - | chr2_3:55437954-55437973 | None:intergenic | 40.0% | |
CTCACTCAGAATTTAAACCC+TGG | + | chr2_3:55438421-55438440 | Msa0300100:intron | 40.0% | |
TATCCAGGAAAGCTTCAGTT+AGG | - | chr2_3:55438568-55438587 | None:intergenic | 40.0% | |
TTTGCACACCACTTAAAAGC+TGG | + | chr2_3:55438805-55438824 | Msa0300100:intron | 40.0% | |
GCAAAGATTAACCTGTTCTG+GGG | + | chr2_3:55439010-55439029 | Msa0300100:CDS | 40.0% | |
TCCCGTCAAGTCCTTCATAT+TGG | - | chr2_3:55436626-55436645 | None:intergenic | 45.0% | |
GACTTGACGGGATATGCTTT+CGG | + | chr2_3:55436634-55436653 | Msa0300100:five_prime_UTR | 45.0% | |
! | TGCTTTCGGTGTGGTCAATA+TGG | + | chr2_3:55436648-55436667 | Msa0300100:five_prime_UTR | 45.0% |
! | TGTCGAGGATTTTGTAGCGA+AGG | + | chr2_3:55436743-55436762 | Msa0300100:five_prime_UTR | 45.0% |
GCATTTGGAAAGCCAAGTGA+AGG | + | chr2_3:55436872-55436891 | Msa0300100:five_prime_UTR | 45.0% | |
GAAGGAGCTGGTGAATGAAT+TGG | + | chr2_3:55436890-55436909 | Msa0300100:five_prime_UTR | 45.0% | |
AAGAGAAGCAGCATGAAGGT+CGG | + | chr2_3:55436961-55436980 | Msa0300100:five_prime_UTR | 45.0% | |
AAGAGAAGCAACATGAAGGC+CGG | + | chr2_3:55437099-55437118 | Msa0300100:five_prime_UTR | 45.0% | |
TCGACTCAAGGTCCTTCATT+CGG | - | chr2_3:55437217-55437236 | None:intergenic | 45.0% | |
TGAATGTCAAGTGAAGGAGC+AGG | + | chr2_3:55437291-55437310 | Msa0300100:five_prime_UTR | 45.0% | |
! | CCTTCATCCGGTCTTCATTT+TGG | - | chr2_3:55437498-55437517 | None:intergenic | 45.0% |
CCAAAATGAAGACCGGATGA+AGG | + | chr2_3:55437495-55437514 | Msa0300100:CDS | 45.0% | |
TTGAGTCATGCTCCTTCATC+CGG | - | chr2_3:55437510-55437529 | None:intergenic | 45.0% | |
! | CCTTTGTTTGGCCTTTGAGT+TGG | - | chr2_3:55437624-55437643 | None:intergenic | 45.0% |
CCAACTCAAAGGCCAAACAA+AGG | + | chr2_3:55437621-55437640 | Msa0300100:CDS | 45.0% | |
AGAGAAGCAACATGAAGGTC+GGG | + | chr2_3:55437741-55437760 | Msa0300100:CDS | 45.0% | |
TGAAAGTAAAGTGGAGGAGC+TGG | + | chr2_3:55437795-55437814 | Msa0300100:CDS | 45.0% | |
!! | GATGCATTTTGAAAGCCAGG+TGG | + | chr2_3:55437828-55437847 | Msa0300100:CDS | 45.0% |
! | CGAGTGATAGATCTGAAACC+AGG | + | chr2_3:55437952-55437971 | Msa0300100:CDS | 45.0% |
! | GATCTGAAACCAGGAACTGA+TGG | + | chr2_3:55437961-55437980 | Msa0300100:CDS | 45.0% |
! | GAAGGTTGGTTGCTGTTCAT+CGG | + | chr2_3:55437999-55438018 | Msa0300100:CDS | 45.0% |
CGAGCTGAAGCTATCAAAGA+CGG | - | chr2_3:55438054-55438073 | None:intergenic | 45.0% | |
TTCCAGTTTCGTCTCCAACT+AGG | - | chr2_3:55438098-55438117 | None:intergenic | 45.0% | |
GTTGCGAGCTGTGAAGATTA+TGG | - | chr2_3:55438121-55438140 | None:intergenic | 45.0% | |
CTGCATTCAAGTAGGATGTG+AGG | + | chr2_3:55438485-55438504 | Msa0300100:intron | 45.0% | |
CAAGTAGGATGTGAGGAACT+AGG | + | chr2_3:55438492-55438511 | Msa0300100:intron | 45.0% | |
AGGACACTGAGTCCTAACAT+TGG | - | chr2_3:55438548-55438567 | None:intergenic | 45.0% | |
TGTCCTAACTGAAGCTTTCC+TGG | + | chr2_3:55438562-55438581 | Msa0300100:intron | 45.0% | |
CCTGCAGCTGGGATATATAT+GGG | - | chr2_3:55438647-55438666 | None:intergenic | 45.0% | |
CCATATATATCCCAGCTGCA+GGG | + | chr2_3:55438645-55438664 | Msa0300100:intron | 45.0% | |
TGGTTAACGCTATGGATGCA+TGG | - | chr2_3:55438677-55438696 | None:intergenic | 45.0% | |
TGGTGTATAGTAAGTTGCCC+TGG | + | chr2_3:55438825-55438844 | Msa0300100:intron | 45.0% | |
! | AGGACTTGATTGGAGAGTGC+AGG | + | chr2_3:55436787-55436806 | Msa0300100:five_prime_UTR | 50.0% |
CATTCACCAGCTCCTTCACT+TGG | - | chr2_3:55436887-55436906 | None:intergenic | 50.0% | |
GCAATTCGAGAGCGGAATGA+AGG | + | chr2_3:55436926-55436945 | Msa0300100:five_prime_UTR | 50.0% | |
AGAGAAGCAGCATGAAGGTC+GGG | + | chr2_3:55436962-55436981 | Msa0300100:five_prime_UTR | 50.0% | |
AGAGAAGCAACATGAAGGCC+GGG | + | chr2_3:55437100-55437119 | Msa0300100:five_prime_UTR | 50.0% | |
TCGATTCATGCTCCTCTACC+CGG | - | chr2_3:55437121-55437140 | None:intergenic | 50.0% | |
TGCAATATGAAGCCGGGTGA+AGG | + | chr2_3:55437243-55437262 | Msa0300100:five_prime_UTR | 50.0% | |
TTGATCTGTGCTCCTTCACC+CGG | - | chr2_3:55437258-55437277 | None:intergenic | 50.0% | |
CGAAAGCCAAATGAAGGAGC+TGG | + | chr2_3:55437417-55437436 | Msa0300100:CDS | 50.0% | |
!! | GCATTTTGAAAGCCAGGTGG+AGG | + | chr2_3:55437831-55437850 | Msa0300100:CDS | 50.0% |
AGAGTGTGTCCATCAGTTCC+TGG | - | chr2_3:55437973-55437992 | None:intergenic | 50.0% | |
TGGACACACTCTGACAGTGA+AGG | + | chr2_3:55437981-55438000 | Msa0300100:CDS | 50.0% | |
CACACTCTGACAGTGAAGGT+TGG | + | chr2_3:55437985-55438004 | Msa0300100:CDS | 50.0% | |
TCAAAGACGGCCATTCATCG+CGG | - | chr2_3:55438041-55438060 | None:intergenic | 50.0% | |
AACTAGGCATTCAGCGATGC+GGG | - | chr2_3:55438082-55438101 | None:intergenic | 50.0% | |
CAACTAGGCATTCAGCGATG+CGG | - | chr2_3:55438083-55438102 | None:intergenic | 50.0% | |
TGCCTAGTTGGAGACGAAAC+TGG | + | chr2_3:55438093-55438112 | Msa0300100:CDS | 50.0% | |
TTCACAGCTCGCAACGAACA+GGG | + | chr2_3:55438126-55438145 | Msa0300100:CDS | 50.0% | |
CCCATATATATCCCAGCTGC+AGG | + | chr2_3:55438644-55438663 | Msa0300100:intron | 50.0% | |
CCCTGCAGCTGGGATATATA+TGG | - | chr2_3:55438648-55438667 | None:intergenic | 50.0% | |
CAGTAGCACCAGGTTTCATG+AGG | - | chr2_3:55438976-55438995 | None:intergenic | 50.0% | |
CGCAGAATTACAGTAGCACC+AGG | - | chr2_3:55438986-55439005 | None:intergenic | 50.0% | |
!! | ACCTGTTCTGGGGACATATG+AGG | + | chr2_3:55439020-55439039 | Msa0300100:CDS | 50.0% |
CTGTGAGCTGTATACATCCC+CGG | - | chr2_3:55439060-55439079 | None:intergenic | 50.0% | |
GACGGGATATGCTTTCGGTG+TGG | + | chr2_3:55436639-55436658 | Msa0300100:five_prime_UTR | 55.0% | |
! | CTTGATTGGAGAGTGCAGGC+AGG | + | chr2_3:55436791-55436810 | Msa0300100:five_prime_UTR | 55.0% |
GGAAAGCCAAGTGAAGGAGC+TGG | + | chr2_3:55436878-55436897 | Msa0300100:five_prime_UTR | 55.0% | |
GCAACATGAAGGTCGGGTGA+AGG | + | chr2_3:55437747-55437766 | Msa0300100:CDS | 55.0% | |
CGCATCGCTGAATGCCTAGT+TGG | + | chr2_3:55438081-55438100 | Msa0300100:CDS | 55.0% | |
CTTCACAGCTCGCAACGAAC+AGG | + | chr2_3:55438125-55438144 | Msa0300100:CDS | 55.0% | |
ATGGTTGCAACCCTGCAGCT+GGG | - | chr2_3:55438658-55438677 | None:intergenic | 55.0% | |
GCAGTGGACCTCATGAAACC+TGG | + | chr2_3:55438965-55438984 | Msa0300100:intron | 55.0% | |
GCCTCATATGTCCCCAGAAC+AGG | - | chr2_3:55439024-55439043 | None:intergenic | 55.0% | |
!! | GTTCTGGGGACATATGAGGC+TGG | + | chr2_3:55439024-55439043 | Msa0300100:CDS | 55.0% |
TGAGGCTGGCAGTTGATTGC+CGG | + | chr2_3:55439038-55439057 | Msa0300100:CDS | 55.0% | |
GCAGCATGAAGGTCGGGTGA+AGG | + | chr2_3:55436968-55436987 | Msa0300100:five_prime_UTR | 60.0% | |
GCAACATGAAGGCCGGGTAG+AGG | + | chr2_3:55437106-55437125 | Msa0300100:five_prime_UTR | 60.0% | |
CGGATTTGAGCTCCTCCACC+TGG | - | chr2_3:55437846-55437865 | None:intergenic | 60.0% | |
AGGCATTCAGCGATGCGGGA+GGG | - | chr2_3:55438078-55438097 | None:intergenic | 60.0% | |
TAGGCATTCAGCGATGCGGG+AGG | - | chr2_3:55438079-55438098 | None:intergenic | 60.0% | |
CATGGTTGCAACCCTGCAGC+TGG | - | chr2_3:55438659-55438678 | None:intergenic | 60.0% | |
GAGGCTGGCAGTTGATTGCC+GGG | + | chr2_3:55439039-55439058 | Msa0300100:CDS | 60.0% | |
AGGCTGGCAGTTGATTGCCG+GGG | + | chr2_3:55439040-55439059 | Msa0300100:CDS | 60.0% | |
TTGCCCCCTGCCGCGATGAA+TGG | + | chr2_3:55438028-55438047 | Msa0300100:CDS | 65.0% | |
ACGGCCATTCATCGCGGCAG+GGG | - | chr2_3:55438035-55438054 | None:intergenic | 65.0% | |
GACGGCCATTCATCGCGGCA+GGG | - | chr2_3:55438036-55438055 | None:intergenic | 65.0% | |
AGACGGCCATTCATCGCGGC+AGG | - | chr2_3:55438037-55438056 | None:intergenic | 65.0% | |
GGCATTCAGCGATGCGGGAG+GGG | - | chr2_3:55438077-55438096 | None:intergenic | 65.0% | |
CGGCCATTCATCGCGGCAGG+GGG | - | chr2_3:55438034-55438053 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_3 | gene | 55436494 | 55439159 | 55436494 | ID=Msa0300100;Name=Msa0300100 |
chr2_3 | mRNA | 55436494 | 55439159 | 55436494 | ID=Msa0300100-mRNA-1;Parent=Msa0300100;Name=Msa0300100-mRNA-1;_AED=0.22;_eAED=0.22;_QI=891|1|0.5|1|1|1|2|0|317 |
chr2_3 | exon | 55436494 | 55438147 | 55436494 | ID=Msa0300100-mRNA-1:exon:17720;Parent=Msa0300100-mRNA-1 |
chr2_3 | exon | 55438969 | 55439159 | 55438969 | ID=Msa0300100-mRNA-1:exon:17721;Parent=Msa0300100-mRNA-1 |
chr2_3 | five_prime_UTR | 55436494 | 55437384 | 55436494 | ID=Msa0300100-mRNA-1:five_prime_utr;Parent=Msa0300100-mRNA-1 |
chr2_3 | CDS | 55437385 | 55438147 | 55437385 | ID=Msa0300100-mRNA-1:cds;Parent=Msa0300100-mRNA-1 |
chr2_3 | CDS | 55438969 | 55439159 | 55438969 | ID=Msa0300100-mRNA-1:cds;Parent=Msa0300100-mRNA-1 |
Gene Sequence |
Protein sequence |