AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0337640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0337640 MtrunA17_Chr2g0325361 46.747 415 151 8 11 373 367 763 5.60e-76 258
Msa0337640 MtrunA17_Chr2g0325361 36.111 504 246 12 17 472 425 900 8.39e-56 201
Msa0337640 MtrunA17_Chr2g0325361 42.453 318 130 5 11 297 511 806 6.56e-42 160
Msa0337640 MtrunA17_Chr2g0325361 41.641 329 112 7 7 255 478 806 1.24e-39 153
Msa0337640 MtrunA17_Chr2g0325361 35.236 403 194 11 2 371 155 523 1.28e-32 132
Msa0337640 MtrunA17_Chr2g0325691 47.971 419 165 6 1 371 213 626 9.61e-75 249
Msa0337640 MtrunA17_Chr2g0325691 46.189 433 174 7 11 398 311 729 2.76e-72 243
Msa0337640 MtrunA17_Chr2g0325691 50.485 309 144 4 63 371 191 490 5.58e-58 204
Msa0337640 MtrunA17_Chr2g0325691 39.319 323 138 8 85 391 153 433 1.45e-31 129
Msa0337640 MtrunA17_Chr2g0325231 38.726 581 245 15 1 477 211 784 9.06e-70 239
Msa0337640 MtrunA17_Chr2g0325231 36.364 539 244 13 11 479 309 818 8.26e-65 225
Msa0337640 MtrunA17_Chr2g0325231 44.828 377 139 7 63 379 189 556 1.89e-53 193
Msa0337640 MtrunA17_Chr2g0325231 34.296 277 98 7 195 388 153 428 4.66e-17 84.7
Msa0337640 MtrunA17_Chr2g0325861 50.450 333 141 4 41 371 282 592 1.38e-67 233
Msa0337640 MtrunA17_Chr2g0325861 38.588 425 206 6 11 401 300 703 1.46e-56 202
Msa0337640 MtrunA17_Chr2g0325861 30.964 394 147 11 85 371 147 522 9.66e-24 105
Msa0337640 MtrunA17_Chr2g0325281 44.010 384 167 6 6 383 240 581 9.85e-66 223
Msa0337640 MtrunA17_Chr2g0325281 46.224 331 132 5 11 331 301 595 2.10e-53 190
Msa0337640 MtrunA17_Chr2g0325281 39.316 234 130 3 154 375 210 443 7.78e-29 120
Msa0337640 MtrunA17_Chr2g0325321 41.849 411 178 7 1 372 178 566 1.37e-55 198
Msa0337640 MtrunA17_Chr2g0325321 33.401 491 261 11 6 474 240 686 1.62e-41 158
Msa0337640 MtrunA17_Chr2g0325321 34.048 373 210 6 13 371 138 488 1.71e-26 113
Msa0337640 MtrunA17_Chr2g0325761 44.225 355 145 6 8 338 266 591 2.65e-54 194
Msa0337640 MtrunA17_Chr2g0325761 41.732 381 170 6 16 387 242 579 2.79e-48 177
Msa0337640 MtrunA17_Chr2g0325641 45.031 322 155 4 24 331 1 314 2.30e-52 180
Msa0337640 MtrunA17_Chr2g0325641 46.290 283 132 3 116 378 1 283 6.35e-48 168
Msa0337640 MtrunA17_Chr2g0325641 39.610 308 138 6 6 275 29 326 6.16e-35 133
Msa0337640 MtrunA17_Chr2g0324821 69.421 121 36 1 375 495 14 133 3.06e-46 157
Msa0337640 MtrunA17_Chr2g0325661 34.511 481 267 8 16 474 247 701 2.38e-44 167
Msa0337640 MtrunA17_Chr7g0235901 50.244 205 66 3 1 191 122 304 2.85e-40 147
Msa0337640 MtrunA17_Chr7g0235901 47.791 249 111 6 132 364 64 309 2.39e-39 145
Msa0337640 MtrunA17_Chr7g0235901 46.124 258 117 6 40 287 64 309 1.21e-36 137
Msa0337640 MtrunA17_Chr7g0235901 44.758 248 111 5 14 254 83 311 6.52e-33 127
Msa0337640 MtrunA17_Chr7g0235901 35.246 244 102 8 191 386 18 253 6.40e-12 66.6
Msa0337640 MtrunA17_Chr2g0325721 49.383 243 101 2 31 273 280 500 5.58e-37 142
Msa0337640 MtrunA17_Chr2g0325721 48.214 224 116 0 135 358 278 501 3.42e-33 132
Msa0337640 MtrunA17_Chr2g0280141 32.593 405 232 7 83 466 251 635 5.64e-37 145
Msa0337640 MtrunA17_Chr2g0280141 36.207 348 187 4 12 346 226 551 7.35e-34 136
Msa0337640 MtrunA17_Chr2g0280141 38.361 305 165 4 30 327 265 553 1.06e-33 135
Msa0337640 MtrunA17_Chr2g0280141 41.434 251 127 4 11 261 299 529 3.48e-30 125
Msa0337640 MtrunA17_Chr2g0280141 34.539 304 191 2 75 371 190 492 1.43e-29 123
Msa0337640 MtrunA17_Chr2g0280141 39.896 193 104 4 11 200 369 552 1.09e-20 95.9
Msa0337640 MtrunA17_Chr5g0434751 44.030 268 119 3 84 320 1 268 1.10e-36 137
Msa0337640 MtrunA17_Chr5g0434751 43.600 250 120 2 130 372 1 236 1.87e-31 123
Msa0337640 MtrunA17_Chr5g0434751 40.370 270 118 5 38 272 1 262 5.14e-30 119
Msa0337640 MtrunA17_Chr5g0434751 45.673 208 91 3 172 379 1 186 4.06e-26 108
Msa0337640 MtrunA17_Chr5g0434751 42.857 259 109 7 12 253 35 271 8.19e-24 101
Msa0337640 MtrunA17_Chr5g0434751 37.198 207 85 4 11 176 62 264 8.60e-17 80.9
Msa0337640 MtrunA17_Chr5g0413571 56.296 135 54 2 361 495 1 130 6.79e-36 130
Msa0337640 MtrunA17_Chr2g0282661 54.887 133 57 2 365 495 14 145 4.85e-33 122
Msa0337640 MtrunA17_Chr2g0325701 47.449 196 95 2 1 196 224 411 4.43e-32 129
Msa0337640 MtrunA17_Chr2g0325701 39.754 244 136 3 44 280 172 411 1.00e-27 117
Msa0337640 MtrunA17_Chr2g0325701 42.857 182 101 1 183 364 233 411 2.48e-23 103
Msa0337640 MtrunA17_Chr2g0325701 34.058 276 150 8 85 347 165 421 1.21e-19 92.0
Msa0337640 MtrunA17_Chr2g0325701 33.333 249 107 8 182 380 110 349 1.04e-13 73.6
Msa0337640 MtrunA17_Chr2g0325711 38.014 292 149 5 31 312 286 555 4.85e-31 127
Msa0337640 MtrunA17_Chr2g0325711 27.500 480 308 8 2 470 208 658 1.31e-26 114
Msa0337640 MtrunA17_Chr2g0325711 32.857 350 211 5 23 371 190 516 1.34e-25 110
Msa0337640 MtrunA17_Chr2g0325711 31.618 408 194 13 23 371 114 495 1.47e-23 104
Msa0337640 MtrunA17_Chr2g0325651 42.279 272 109 7 23 253 113 377 7.30e-31 123
Msa0337640 MtrunA17_Chr2g0325651 37.402 254 126 6 119 345 138 385 4.35e-20 92.0
Msa0337640 MtrunA17_Chr2g0325651 42.857 161 58 3 3 136 233 386 2.77e-17 83.6
Msa0337640 MtrunA17_Chr2g0325651 35.565 239 120 6 163 376 140 369 6.94e-16 79.3
Msa0337640 MtrunA17_Chr5g0416271 33.634 333 153 7 143 474 145 410 6.02e-29 119
Msa0337640 MtrunA17_Chr5g0416271 38.532 218 111 3 16 233 138 332 1.36e-26 112
Msa0337640 MtrunA17_Chr5g0416271 43.243 185 73 3 2 176 155 317 6.57e-25 107
Msa0337640 MtrunA17_Chr2g0325221 37.906 277 155 3 128 404 311 570 7.69e-29 120
Msa0337640 MtrunA17_Chr2g0325221 35.484 310 190 3 70 379 301 600 2.37e-28 119
Msa0337640 MtrunA17_Chr2g0325221 37.456 283 135 5 11 259 318 592 7.90e-27 114
Msa0337640 MtrunA17_Chr2g0325811 38.783 263 137 2 128 366 307 569 4.42e-27 115
Msa0337640 MtrunA17_Chr2g0325811 34.333 300 165 3 38 327 295 572 2.23e-23 104
Msa0337640 MtrunA17_Chr2g0325811 36.538 260 127 3 31 256 316 571 7.89e-23 102
Msa0337640 MtrunA17_Chr2g0325811 34.074 270 150 3 96 341 307 572 5.44e-22 100
Msa0337640 MtrunA17_Chr2g0325811 32.578 353 196 8 32 358 131 467 6.00e-19 90.5
Msa0337640 MtrunA17_Chr2g0325811 34.568 162 82 3 17 158 414 571 2.49e-12 69.7
Msa0337640 MtrunA17_Chr2g0325351 37.066 259 126 5 23 270 203 435 4.74e-25 108
Msa0337640 MtrunA17_Chr2g0325351 29.657 408 230 10 77 474 153 513 7.70e-24 105
Msa0337640 MtrunA17_Chr2g0325351 40.553 217 100 3 1 217 220 407 1.19e-19 92.4
Msa0337640 MtrunA17_Chr2g0325241 37.868 272 131 7 103 369 75 313 5.70e-25 107
Msa0337640 MtrunA17_Chr2g0325241 37.850 214 114 3 113 307 108 321 1.19e-20 94.4
Msa0337640 MtrunA17_Chr2g0325241 39.157 166 87 1 207 372 120 271 2.14e-20 93.6
Msa0337640 MtrunA17_Chr2g0325241 35.632 261 133 6 16 272 119 348 7.32e-19 89.0
Msa0337640 MtrunA17_Chr2g0325241 35.795 176 92 3 11 166 146 320 4.54e-12 67.8
Msa0337640 MtrunA17_Chr6g0471251 31.095 402 208 8 80 466 237 584 6.10e-25 108
Msa0337640 MtrunA17_Chr6g0471251 41.949 236 128 3 16 251 258 484 1.52e-20 95.5
Msa0337640 MtrunA17_Chr6g0471251 29.700 367 142 12 105 371 93 443 7.59e-12 67.8
Msa0337640 MtrunA17_Chr2g0325791 51.128 133 57 2 2 134 32 156 1.72e-23 101
Msa0337640 MtrunA17_Chr2g0325791 44.444 135 74 1 85 219 24 157 2.29e-18 86.3
Msa0337640 MtrunA17_Chr2g0325791 44.203 138 72 2 170 303 21 157 3.08e-15 76.6
Msa0337640 MtrunA17_Chr2g0325791 42.748 131 70 2 131 257 24 153 8.48e-15 75.5
Msa0337640 MtrunA17_Chr2g0325791 42.446 139 69 3 42 176 25 156 3.95e-13 70.5
Msa0337640 MtrunA17_Chr2g0325791 40.458 131 68 2 157 287 35 155 3.08e-12 67.8
Msa0337640 MtrunA17_Chr2g0325791 30.460 174 104 5 254 414 41 210 9.35e-11 63.2
Msa0337640 MtrunA17_Chr2g0325781 44.371 151 73 3 48 191 156 302 6.10e-22 96.3
Msa0337640 MtrunA17_Chr2g0325781 57.143 105 41 1 1 105 204 304 1.37e-21 95.5
Msa0337640 MtrunA17_Chr2g0325781 39.086 197 69 5 86 273 146 300 1.05e-19 89.7
Msa0337640 MtrunA17_Chr2g0325781 55.682 88 35 1 276 359 215 302 6.64e-17 81.6
Msa0337640 MtrunA17_Chr2g0325611 40.097 207 104 4 46 237 147 348 2.33e-21 97.4
Msa0337640 MtrunA17_Chr2g0325611 42.697 178 89 2 77 254 146 310 1.02e-19 92.4
Msa0337640 MtrunA17_Chr2g0325611 31.399 293 169 8 199 474 138 415 3.17e-17 84.7
Msa0337640 MtrunA17_Chr2g0325611 37.989 179 91 3 149 315 144 314 5.28e-16 80.9
Msa0337640 MtrunA17_Chr6g0476691 55.844 77 34 0 419 495 17 93 6.77e-21 87.4
Msa0337640 MtrunA17_Chr8g0365411 39.259 135 44 1 361 495 1 97 1.88e-17 77.8
Msa0337640 MtrunA17_Chr2g0325621 38.249 217 121 3 146 356 168 377 4.62e-17 84.3
Msa0337640 MtrunA17_Chr2g0325621 43.571 140 79 0 171 310 248 387 6.76e-13 71.2
Msa0337640 MtrunA17_Chr2g0325731 67.241 58 19 0 298 355 1 58 1.91e-16 73.9
Msa0337640 MtrunA17_Chr2g0325731 60.656 61 20 1 38 98 1 57 6.19e-14 67.0
Msa0337640 MtrunA17_Chr2g0325731 56.452 62 27 0 214 275 1 62 1.61e-12 62.8
Msa0337640 MtrunA17_Chr2g0333341 33.466 251 142 8 114 361 222 450 6.32e-16 80.9
Msa0337640 MtrunA17_Chr2g0325751 39.098 133 74 1 128 260 5 130 1.91e-15 73.9
Msa0337640 MtrunA17_Chr2g0325751 44.094 127 64 1 158 284 7 126 7.81e-15 72.0
Msa0337640 MtrunA17_Chr2g0325751 41.667 120 63 1 138 257 1 113 3.62e-14 70.1
Msa0337640 MtrunA17_Chr2g0325751 40.909 132 71 1 242 373 7 131 8.06e-14 69.3
Msa0337640 MtrunA17_Chr2g0325751 42.636 129 63 2 79 200 2 126 4.48e-13 67.0
Msa0337640 MtrunA17_Chr2g0325751 40.800 125 67 1 200 324 7 124 6.72e-13 66.6
Msa0337640 MtrunA17_Chr2g0325751 37.692 130 74 1 209 338 2 124 2.99e-12 64.7
Msa0337640 MtrunA17_Chr2g0325751 34.503 171 80 3 36 206 5 143 1.42e-11 62.8
Msa0337640 MtrunA17_Chr2g0325751 37.500 128 73 1 182 309 3 123 6.61e-11 60.8
Msa0337640 MtrunA17_Chr2g0325261 49.074 108 40 2 107 214 214 306 2.88e-15 76.6
Msa0337640 MtrunA17_Chr2g0325261 48.235 85 44 0 172 256 222 306 4.29e-12 67.0
Msa0337640 MtrunA17_Chr2g0325261 43.478 115 56 3 16 130 201 306 1.96e-11 65.1
Msa0337640 MtrunA17_Chr2g0325261 37.500 136 61 3 166 298 192 306 6.47e-11 63.5
Msa0337640 MtrunA17_Chr2g0325341 49.074 108 40 2 107 214 214 306 2.88e-15 76.6
Msa0337640 MtrunA17_Chr2g0325341 48.235 85 44 0 172 256 222 306 4.29e-12 67.0
Msa0337640 MtrunA17_Chr2g0325341 43.478 115 56 3 16 130 201 306 1.96e-11 65.1
Msa0337640 MtrunA17_Chr2g0325341 37.500 136 61 3 166 298 192 306 6.47e-11 63.5
Msa0337640 MtrunA17_Chr5g0438061 43.529 85 45 3 419 501 138 221 1.15e-12 67.4
Msa0337640 MtrunA17_Chr2g0325211 35.165 182 100 2 138 319 1 164 1.13e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0337640 AT2G33845.1 61.475 122 39 2 375 494 59 174 9.58e-40 142
Msa0337640 AT4G28440.1 60.163 123 46 2 375 495 24 145 2.67e-38 137
Msa0337640 AT1G23750.1 55.172 116 47 2 379 494 20 130 5.10e-36 130
Msa0337640 AT1G03810.1 58.678 121 48 1 375 495 21 139 2.41e-34 126
Msa0337640 AT1G23750.2 66.667 81 27 0 414 494 13 93 5.38e-32 118
Msa0337640 AT1G10590.3 49.286 140 67 2 360 498 14 150 1.03e-30 117
Msa0337640 AT1G10590.2 49.640 139 66 2 361 498 1 136 4.79e-30 114
Msa0337640 AT1G10590.1 49.640 139 66 2 361 498 1 136 4.79e-30 114

Find 128 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCATCCGGTCTTCATTT+TGG 0.147230 2_4:+57692442 None:intergenic
ATGCAAAGATTAACCTGTTC+TGG 0.253388 2_4:-57691007 Msa0337640:CDS
TGGTGTCGAATATTATGATT+AGG 0.284068 2_4:-57693258 Msa0337640:five_prime_UTR
TTGATTTAAACTCCTTCATT+TGG 0.300483 2_4:+57692031 None:intergenic
TCAATACCAGCTCCTTCATT+TGG 0.329113 2_4:+57692514 None:intergenic
CATTTCAAAACAAAAGCATT+TGG 0.331220 2_4:-57693081 Msa0337640:CDS
TCTCTAACTTCAAAACTTGC+AGG 0.345507 2_4:+57690933 None:intergenic
TCAAGGATAGGATCAACTTT+GGG 0.349068 2_4:-57693358 Msa0337640:five_prime_UTR
CTTCAATATGAAGGACTTGA+TGG 0.362402 2_4:-57693220 Msa0337640:five_prime_UTR
GATAGATTTGGATGGATGTT+TGG 0.365545 2_4:-57693278 Msa0337640:five_prime_UTR
GGTGTCGAATATTATGATTA+GGG 0.380228 2_4:-57693257 Msa0337640:five_prime_UTR
GTTGCGAGCTGTGAAGATTA+TGG 0.381200 2_4:+57691819 None:intergenic
TCCTTTCAATTGCATCTCTT+CGG 0.386064 2_4:+57692074 None:intergenic
TGAAAGCAAAATGAAGAAAC+TGG 0.395480 2_4:-57692268 Msa0337640:CDS
CTTCACAGCTCGCAACGAAC+AGG 0.397474 2_4:-57691812 Msa0337640:CDS
TCGACTCAAGTTCCTTCATT+CGG 0.398246 2_4:+57692862 None:intergenic
GATAGATTTGGTGACTGATT+TGG 0.398420 2_4:-57692910 Msa0337640:CDS
TGAGGCTGGCAGTTGATTGC+CGG 0.400616 2_4:-57690977 Msa0337640:CDS
CGGATTTGAGCTCCTCCACC+TGG 0.402176 2_4:+57692094 None:intergenic
TGAAGGTCAAGTGATAGATT+TGG 0.402956 2_4:-57692922 Msa0337640:CDS
TTGAGTCATGCTCCTTCATC+CGG 0.403682 2_4:+57692430 None:intergenic
TCGACTCAAGGTCCTTCATT+CGG 0.407601 2_4:+57692724 None:intergenic
TGCCTAGTTGGAGACGAAAC+TGG 0.409862 2_4:-57691844 Msa0337640:CDS
AGAGTGTGTCCATCAGTTCC+TGG 0.411282 2_4:+57691967 None:intergenic
GCCTCATATGTCCCCAGAAC+AGG 0.421872 2_4:+57690994 None:intergenic
TAATGTTGAAGGTTGATGAT+AGG 0.428079 2_4:-57693333 Msa0337640:five_prime_UTR
TCAACTCAAACATCTTCATC+TGG 0.434798 2_4:+57692220 None:intergenic
CCTATCCTTGAGAGAAAAGA+TGG 0.436295 2_4:+57693370 None:intergenic
CTCAAGGATAGGATCAACTT+TGG 0.441059 2_4:-57693359 Msa0337640:five_prime_UTR
GGCATTCAGCGATGCGGGAG+GGG 0.443427 2_4:+57691863 None:intergenic
TGCAAAGATTAACCTGTTCT+GGG 0.444397 2_4:-57691006 Msa0337640:CDS
AGACGGCCATTCATCGCGGC+AGG 0.444865 2_4:+57691903 None:intergenic
CATTCACCAGCTCCTTCACT+TGG 0.448226 2_4:+57693054 None:intergenic
CGCATCGCTGAATGCCTAGT+TGG 0.457979 2_4:-57691856 Msa0337640:CDS
TATGGTAGAGCTATGTTTGA+TGG 0.459358 2_4:-57693173 Msa0337640:five_prime_UTR
CCTTTGTTTGGCCTTTGAGT+TGG 0.459817 2_4:+57692316 None:intergenic
ACCTGTTCTGGGGACATATG+AGG 0.469408 2_4:-57690995 Msa0337640:CDS
ACGGCCATTCATCGCGGCAG+GGG 0.470283 2_4:+57691905 None:intergenic
TCGATTCATGCTCCTCTACC+CGG 0.471523 2_4:+57692820 None:intergenic
TGAAAGTAAAGTGGAGGAGC+TGG 0.471794 2_4:-57692142 Msa0337640:CDS
TGAAAGGCAAGTTAAGGAGT+TGG 0.472552 2_4:-57692604 Msa0337640:CDS
AATATGTGTGGAGATAGATT+TGG 0.473353 2_4:-57693290 Msa0337640:five_prime_UTR
ATTGCATTTCTTTCGACTCA+AGG 0.473853 2_4:+57692712 None:intergenic
AACTAGGCATTCAGCGATGC+GGG 0.477868 2_4:+57691858 None:intergenic
GGACAAATTAAAGAATTTGA+AGG 0.485990 2_4:-57692054 Msa0337640:CDS
GAGGCTGGCAGTTGATTGCC+GGG 0.487781 2_4:-57690976 Msa0337640:CDS
GCAACATGAAGGCCGGGTAG+AGG 0.489755 2_4:-57692832 Msa0337640:CDS
AGAATTTGAAGGCCAAATGA+AGG 0.491861 2_4:-57692043 Msa0337640:CDS
TTGATCTGTGCTCCTTCACC+CGG 0.492422 2_4:+57692682 None:intergenic
CGCAGAATTACAGTAGCACC+AGG 0.493091 2_4:+57691032 None:intergenic
CGAGTTAATCTTCAATATGA+AGG 0.498837 2_4:-57693229 Msa0337640:five_prime_UTR
GCAATTCGAGAGCGGAATGA+AGG 0.499417 2_4:-57693012 Msa0337640:CDS
TAGAGAATTTGAAAGTAAAG+TGG 0.505463 2_4:-57692151 Msa0337640:CDS
AAGAAATGCAATATGAAGGC+CGG 0.508601 2_4:-57692701 Msa0337640:CDS
CTGGTTTCAGATCTATCACT+CGG 0.510842 2_4:+57691986 None:intergenic
GAAGGAGCTGGTGAATGAAT+TGG 0.514445 2_4:-57693048 Msa0337640:CDS
AAGAGAAGCAACATGAAGGC+CGG 0.515329 2_4:-57692839 Msa0337640:CDS
AGAGAAGCAACATGAAGGTC+GGG 0.518749 2_4:-57692196 Msa0337640:CDS
AAGGTTGATGATAGGCTAAG+TGG 0.520158 2_4:-57693325 Msa0337640:five_prime_UTR
TCAAAGAAGCGAGAATTTGA+AGG 0.520665 2_4:-57692411 Msa0337640:CDS
TTCCAGTTTCGTCTCCAACT+AGG 0.523242 2_4:+57691842 None:intergenic
CCAACTTGTAAGTAAAATGA+AGG 0.525826 2_4:-57692568 Msa0337640:CDS
AGAGAAGCAGCATGAAGGTC+GGG 0.525926 2_4:-57692976 Msa0337640:CDS
GCTGTTTGAAAGGCAAGTTA+AGG 0.528403 2_4:-57692610 Msa0337640:CDS
CCAAAATGAAGACCGGATGA+AGG 0.534699 2_4:-57692442 Msa0337640:CDS
AGGCATTCAGCGATGCGGGA+GGG 0.535234 2_4:+57691862 None:intergenic
TTGACTCAAACAGTTTGACT+TGG 0.537417 2_4:+57692346 None:intergenic
GATCTGAAACCAGGAACTGA+TGG 0.538419 2_4:-57691976 Msa0337640:CDS
GAAGGTTGGTTGCTGTTCAT+CGG 0.538772 2_4:-57691938 Msa0337640:CDS
CTTTCGCTATGCTTTCGCTA+TGG 0.539727 2_4:-57693191 Msa0337640:five_prime_UTR
AGAAATGCAATATGAAGGCC+GGG 0.540036 2_4:-57692700 Msa0337640:CDS
AGAATTCGAAAGCCAAATGA+AGG 0.543820 2_4:-57692526 Msa0337640:CDS
TCGAAAGAAATGCAATATGA+AGG 0.546034 2_4:-57692705 Msa0337640:CDS
GCAGCATGAAGGTCGGGTGA+AGG 0.550368 2_4:-57692970 Msa0337640:CDS
CTAAACAGAAGCTGTTTGAA+AGG 0.550931 2_4:-57692620 Msa0337640:CDS
CGAAAGCCAAATGAAGGAGC+TGG 0.557116 2_4:-57692520 Msa0337640:CDS
CGGCCATTCATCGCGGCAGG+GGG 0.557172 2_4:+57691906 None:intergenic
AGAATTTGAATGTCAAGTGA+AGG 0.557857 2_4:-57692652 Msa0337640:CDS
CTGTGAGCTGTATACATCCC+CGG 0.558440 2_4:+57690958 None:intergenic
GCATTTCGAAAGTCGAATGA+AGG 0.559949 2_4:-57692484 Msa0337640:CDS
TCAAATTATAACCAACTCAA+AGG 0.560582 2_4:-57692327 Msa0337640:CDS
AGAGAAGCAACATGAAGGCC+GGG 0.561927 2_4:-57692838 Msa0337640:CDS
GACGGCCATTCATCGCGGCA+GGG 0.563301 2_4:+57691904 None:intergenic
AAGAGAACCAAAATGAAGAC+CGG 0.565006 2_4:-57692449 Msa0337640:CDS
GCAATATGAAGGCCGGGTGA+AGG 0.567231 2_4:-57692694 Msa0337640:CDS
AGGTTGATGATAGGCTAAGT+GGG 0.570548 2_4:-57693324 Msa0337640:five_prime_UTR
CGAGTGATAGATCTGAAACC+AGG 0.572545 2_4:-57691985 Msa0337640:CDS
TCCGAAGAGATGCAATTGAA+AGG 0.572726 2_4:-57692075 Msa0337640:CDS
TTCAATATGAAGGACTTGAT+GGG 0.576858 2_4:-57693219 Msa0337640:five_prime_UTR
GCAACATGAAGGTCGGGTGA+AGG 0.579309 2_4:-57692190 Msa0337640:CDS
GATGGAGCTTTATCTAGTCA+TGG 0.590430 2_4:-57693108 Msa0337640:CDS
TCGAAAGAGAAGCAACATGA+AGG 0.592048 2_4:-57692843 Msa0337640:CDS
AAGAGAAGCAACATGAAGGT+CGG 0.592279 2_4:-57692197 Msa0337640:CDS
GTGTCGAATATTATGATTAG+GGG 0.593607 2_4:-57693256 Msa0337640:five_prime_UTR
TTGAAAGAGAAGCAACATGA+AGG 0.594016 2_4:-57692201 Msa0337640:CDS
GTTCTGGGGACATATGAGGC+TGG 0.595747 2_4:-57690991 Msa0337640:CDS
GGAAAGCCAAGTGAAGGAGC+TGG 0.596353 2_4:-57693060 Msa0337640:CDS
AACTGATGGACACACTCTGA+CGG 0.596699 2_4:-57691962 Msa0337640:CDS
CAAGGATAGGATCAACTTTG+GGG 0.597510 2_4:-57693357 Msa0337640:five_prime_UTR
CGAGCTGAAGCTATCAAAGA+CGG 0.598648 2_4:+57691886 None:intergenic
AGAATTTGAAGGTCAAGTGA+AGG 0.598860 2_4:-57692400 Msa0337640:CDS
GAGGACTTGATTGAGAGTGC+AGG 0.600247 2_4:-57693151 Msa0337640:five_prime_UTR
AGAATTTGAAAGTAAAGTGG+AGG 0.600864 2_4:-57692148 Msa0337640:CDS
TAGGCATTCAGCGATGCGGG+AGG 0.606084 2_4:+57691861 None:intergenic
AAATCACTCTTCAACGACAT+CGG 0.606854 2_4:+57690868 None:intergenic
AAGAGAAGCAGCATGAAGGT+CGG 0.608292 2_4:-57692977 Msa0337640:CDS
GCATTTGGAAAGCCAAGTGA+AGG 0.609390 2_4:-57693066 Msa0337640:CDS
TTAAAAGAGAAGCAGCATGA+AGG 0.610849 2_4:-57692981 Msa0337640:CDS
TTCACAGCTCGCAACGAACA+GGG 0.612349 2_4:-57691811 Msa0337640:intron
CACACTCTGACGGTGAAGGT+TGG 0.613932 2_4:-57691952 Msa0337640:CDS
CAGTAGCACCAGGTTTCATG+AGG 0.614066 2_4:+57691042 None:intergenic
TGAATGTCAAGTGAAGGAGC+AGG 0.620944 2_4:-57692646 Msa0337640:CDS
GATGGGTTACAAAGTTCCAT+CGG 0.621106 2_4:+57693388 None:intergenic
ACTTGATTGAGAGTGCAGGA+AGG 0.630014 2_4:-57693147 Msa0337640:five_prime_UTR
TGGACACACTCTGACGGTGA+AGG 0.634126 2_4:-57691956 Msa0337640:CDS
GCAGTGGACCTCATGAAACC+TGG 0.636118 2_4:-57691050 Msa0337640:intron
CAACTAGGCATTCAGCGATG+CGG 0.638058 2_4:+57691857 None:intergenic
CTATCCTTGAGAGAAAAGAT+GGG 0.649447 2_4:+57693371 None:intergenic
GCAAAGATTAACCTGTTCTG+GGG 0.661250 2_4:-57691005 Msa0337640:CDS
TGTCGAATATTATGATTAGG+GGG 0.661343 2_4:-57693255 Msa0337640:five_prime_UTR
GGTAGAGCTATGTTTGATGG+AGG 0.666353 2_4:-57693170 Msa0337640:five_prime_UTR
AGACAAAAGCAATTCGAGAG+CGG 0.666493 2_4:-57693020 Msa0337640:CDS
GAAATACGCGAGAATATGTG+TGG 0.672119 2_4:-57693302 Msa0337640:five_prime_UTR
TGTGTGGAGATAGATTTGGA+TGG 0.680421 2_4:-57693286 Msa0337640:five_prime_UTR
CCAACTCAAAGGCCAAACAA+AGG 0.684873 2_4:-57692316 Msa0337640:CDS
AAGGATAGGATCAACTTTGG+GGG 0.707340 2_4:-57693356 Msa0337640:five_prime_UTR
AGGCTGGCAGTTGATTGCCG+GGG 0.718353 2_4:-57690975 Msa0337640:CDS
TCAAAGACGGCCATTCATCG+CGG 0.726292 2_4:+57691899 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATACACTCATAATTTTAAT+CGG + chr2_4:57693034-57693053 None:intergenic 15.0%
!! TCAAAAAATAGAGAATTTGA+AGG - chr2_4:57691325-57691344 Msa0337640:intron 20.0%
!! AGAATTTAAAAATCATGTGA+CGG - chr2_4:57691474-57691493 Msa0337640:intron 20.0%
!!! TAAAACTCGTTGATTTTATA+TGG - chr2_4:57692714-57692733 Msa0337640:CDS 20.0%
!!! ACCTAATTTTATGCATATTA+TGG - chr2_4:57692771-57692790 Msa0337640:CDS 20.0%
!! TCCATAATATGCATAAAATT+AGG + chr2_4:57692775-57692794 None:intergenic 20.0%
!!! CATTTCAAAACAAAAGCATT+TGG - chr2_4:57691183-57691202 Msa0337640:intron 25.0%
! TCAAATTATAACCAACTCAA+AGG - chr2_4:57691937-57691956 Msa0337640:CDS 25.0%
! TTAAAAAGAACTCCTTTGTT+TGG + chr2_4:57691963-57691982 None:intergenic 25.0%
! TAGAGAATTTGAAAGTAAAG+TGG - chr2_4:57692113-57692132 Msa0337640:CDS 25.0%
! GGACAAATTAAAGAATTTGA+AGG - chr2_4:57692210-57692229 Msa0337640:CDS 25.0%
! TTGATTTAAACTCCTTCATT+TGG + chr2_4:57692236-57692255 None:intergenic 25.0%
! ATGTTCAATTTAAGTGCTAT+TGG - chr2_4:57692522-57692541 Msa0337640:CDS 25.0%
!!! GATATGTAATTTGTTGACTT+GGG - chr2_4:57692544-57692563 Msa0337640:CDS 25.0%
!!! AAGACTTGAAAGTGTTTTTA+AGG - chr2_4:57692607-57692626 Msa0337640:CDS 25.0%
! TACATTTACACAATCAATGA+AGG + chr2_4:57692674-57692693 None:intergenic 25.0%
!! TTCATTGATTGTGTAAATGT+AGG - chr2_4:57692673-57692692 Msa0337640:CDS 25.0%
! TATTATTACTGCATTCAAGT+AGG - chr2_4:57692804-57692823 Msa0337640:CDS 25.0%
! TAAAGAGTGATATTGTCTTA+TGG - chr2_4:57692843-57692862 Msa0337640:CDS 25.0%
!!! TAATTTTAATCGGACGAATA+TGG + chr2_4:57693024-57693043 None:intergenic 25.0%
! AAAGAACAAAATATGTGCTA+AGG + chr2_4:57693125-57693144 None:intergenic 25.0%
!!! ATTCATTTACTTTTATGCAG+TGG - chr2_4:57693198-57693217 Msa0337640:five_prime_UTR 25.0%
!! TAATGTTGAAGGTTGATGAT+AGG - chr2_4:57690931-57690950 Msa0337640:CDS 30.0%
AATATGTGTGGAGATAGATT+TGG - chr2_4:57690974-57690993 Msa0337640:CDS 30.0%
! TGGTGTCGAATATTATGATT+AGG - chr2_4:57691006-57691025 Msa0337640:CDS 30.0%
! GGTGTCGAATATTATGATTA+GGG - chr2_4:57691007-57691026 Msa0337640:CDS 30.0%
GTGTCGAATATTATGATTAG+GGG - chr2_4:57691008-57691027 Msa0337640:CDS 30.0%
TGTCGAATATTATGATTAGG+GGG - chr2_4:57691009-57691028 Msa0337640:CDS 30.0%
CGAGTTAATCTTCAATATGA+AGG - chr2_4:57691035-57691054 Msa0337640:CDS 30.0%
TTCAATATGAAGGACTTGAT+GGG - chr2_4:57691045-57691064 Msa0337640:CDS 30.0%
TCGAAAGAAATGCAATATGA+AGG - chr2_4:57691559-57691578 Msa0337640:intron 30.0%
AGAATTTGAATGTCAAGTGA+AGG - chr2_4:57691612-57691631 Msa0337640:intron 30.0%
! CCTTCATTTTACTTACAAGT+TGG + chr2_4:57691699-57691718 None:intergenic 30.0%
CCAACTTGTAAGTAAAATGA+AGG - chr2_4:57691696-57691715 Msa0337640:intron 30.0%
!! AGGAGTTCTTTTTAAAAGAG+AGG - chr2_4:57691968-57691987 Msa0337640:CDS 30.0%
!! GGAGTTCTTTTTAAAAGAGA+GGG - chr2_4:57691969-57691988 Msa0337640:CDS 30.0%
TGAAAGCAAAATGAAGAAAC+TGG - chr2_4:57691996-57692015 Msa0337640:CDS 30.0%
AGAATTTGAAAGTAAAGTGG+AGG - chr2_4:57692116-57692135 Msa0337640:CDS 30.0%
AAACACAATGCAACAGTTAA+AGG + chr2_4:57692502-57692521 None:intergenic 30.0%
!! GGATATGTAATTTGTTGACT+TGG - chr2_4:57692543-57692562 Msa0337640:CDS 30.0%
AAGTCTTAACTGCTTAGAAA+TGG + chr2_4:57692594-57692613 None:intergenic 30.0%
TATGCATAAAATTAGGTCCA+GGG + chr2_4:57692768-57692787 None:intergenic 30.0%
ATATGCATAAAATTAGGTCC+AGG + chr2_4:57692769-57692788 None:intergenic 30.0%
! CTGGATAAGCTTTATGTAAT+GGG - chr2_4:57692908-57692927 Msa0337640:CDS 30.0%
AAGATAAAATGTAACAGCCA+GGG + chr2_4:57693092-57693111 None:intergenic 30.0%
ACAAAATATGTGCTAAGGAA+TGG + chr2_4:57693120-57693139 None:intergenic 30.0%
!!! CTTGTTTTTGAAGAGGATAT+CGG - chr2_4:57693167-57693186 Msa0337640:five_prime_UTR 30.0%
CTATCCTTGAGAGAAAAGAT+GGG + chr2_4:57690896-57690915 None:intergenic 35.0%
TCAAGGATAGGATCAACTTT+GGG - chr2_4:57690906-57690925 Msa0337640:CDS 35.0%
GATAGATTTGGATGGATGTT+TGG - chr2_4:57690986-57691005 Msa0337640:CDS 35.0%
CTTCAATATGAAGGACTTGA+TGG - chr2_4:57691044-57691063 Msa0337640:CDS 35.0%
TATGGTAGAGCTATGTTTGA+TGG - chr2_4:57691091-57691110 Msa0337640:intron 35.0%
TTAAAAGAGAAGCAGCATGA+AGG - chr2_4:57691283-57691302 Msa0337640:intron 35.0%
TGAAGGTCAAGTGATAGATT+TGG - chr2_4:57691342-57691361 Msa0337640:intron 35.0%
!! GATAGATTTGGTGACTGATT+TGG - chr2_4:57691354-57691373 Msa0337640:intron 35.0%
ATTGCATTTCTTTCGACTCA+AGG + chr2_4:57691555-57691574 None:intergenic 35.0%
AAGAAATGCAATATGAAGGC+CGG - chr2_4:57691563-57691582 Msa0337640:intron 35.0%
CTAAACAGAAGCTGTTTGAA+AGG - chr2_4:57691644-57691663 Msa0337640:intron 35.0%
AGAATTCGAAAGCCAAATGA+AGG - chr2_4:57691738-57691757 Msa0337640:intron 35.0%
AAGAGAACCAAAATGAAGAC+CGG - chr2_4:57691815-57691834 Msa0337640:CDS 35.0%
TCAAAGAAGCGAGAATTTGA+AGG - chr2_4:57691853-57691872 Msa0337640:CDS 35.0%
AGAATTTGAAGGTCAAGTGA+AGG - chr2_4:57691336-57691355 Msa0337640:intron 35.0%
TTGACTCAAACAGTTTGACT+TGG + chr2_4:57691921-57691940 None:intergenic 35.0%
! GTGAAAAAGAGACGTTTTGA+AGG - chr2_4:57692021-57692040 Msa0337640:CDS 35.0%
TCAACTCAAACATCTTCATC+TGG + chr2_4:57692047-57692066 None:intergenic 35.0%
TTGAAAGAGAAGCAACATGA+AGG - chr2_4:57692063-57692082 Msa0337640:CDS 35.0%
!! AAAGATGCATTTTGAAAGCC+AGG - chr2_4:57692152-57692171 Msa0337640:CDS 35.0%
TCCTTTCAATTGCATCTCTT+CGG + chr2_4:57692193-57692212 None:intergenic 35.0%
AGAATTTGAAGGCCAAATGA+AGG - chr2_4:57692221-57692240 Msa0337640:CDS 35.0%
! AAAGCGAGAGAATTTTCTGA+AGG - chr2_4:57692255-57692274 Msa0337640:CDS 35.0%
TGAAGGACAAAACGTAATCA+TGG + chr2_4:57692657-57692676 None:intergenic 35.0%
TTATGGTTTCTGCCAATGTT+AGG - chr2_4:57692860-57692879 Msa0337640:CDS 35.0%
CCATTACATAAAGCTTATCC+AGG + chr2_4:57692910-57692929 None:intergenic 35.0%
! CCTGGATAAGCTTTATGTAA+TGG - chr2_4:57692907-57692926 Msa0337640:CDS 35.0%
! ACTATACACCAGCTTTTAAG+TGG + chr2_4:57693063-57693082 None:intergenic 35.0%
GAAGATAAAATGTAACAGCC+AGG + chr2_4:57693093-57693112 None:intergenic 35.0%
ATATGTGCTAAGGAATGGAT+TGG + chr2_4:57693115-57693134 None:intergenic 35.0%
!!! TGTCTTGCTTGTTTTTGAAG+AGG - chr2_4:57693160-57693179 Msa0337640:five_prime_UTR 35.0%
ATGCAAAGATTAACCTGTTC+TGG - chr2_4:57693257-57693276 Msa0337640:five_prime_UTR 35.0%
TGCAAAGATTAACCTGTTCT+GGG - chr2_4:57693258-57693277 Msa0337640:five_prime_UTR 35.0%
TCTCTAACTTCAAAACTTGC+AGG + chr2_4:57693334-57693353 None:intergenic 35.0%
!!! TGCAAGTTTTGAAGTTAGAG+AGG - chr2_4:57693333-57693352 Msa0337640:five_prime_UTR 35.0%
! GTAACCCATCTTTTCTCTCA+AGG - chr2_4:57690889-57690908 Msa0337640:CDS 40.0%
CCTATCCTTGAGAGAAAAGA+TGG + chr2_4:57690897-57690916 None:intergenic 40.0%
! CCATCTTTTCTCTCAAGGAT+AGG - chr2_4:57690894-57690913 Msa0337640:CDS 40.0%
CTCAAGGATAGGATCAACTT+TGG - chr2_4:57690905-57690924 Msa0337640:CDS 40.0%
CAAGGATAGGATCAACTTTG+GGG - chr2_4:57690907-57690926 Msa0337640:CDS 40.0%
AAGGATAGGATCAACTTTGG+GGG - chr2_4:57690908-57690927 Msa0337640:CDS 40.0%
! AACTTTGGGGGTAATGTTGA+AGG - chr2_4:57690920-57690939 Msa0337640:CDS 40.0%
!! AAGGTTGATGATAGGCTAAG+TGG - chr2_4:57690939-57690958 Msa0337640:CDS 40.0%
!! AGGTTGATGATAGGCTAAGT+GGG - chr2_4:57690940-57690959 Msa0337640:CDS 40.0%
GAAATACGCGAGAATATGTG+TGG - chr2_4:57690962-57690981 Msa0337640:CDS 40.0%
TGTGTGGAGATAGATTTGGA+TGG - chr2_4:57690978-57690997 Msa0337640:CDS 40.0%
GGAGCTTGAGAAAAAAGAGA+TGG - chr2_4:57691138-57691157 Msa0337640:intron 40.0%
! GATGGAGCTTTATCTAGTCA+TGG - chr2_4:57691156-57691175 Msa0337640:intron 40.0%
AGACAAAAGCAATTCGAGAG+CGG - chr2_4:57691244-57691263 Msa0337640:intron 40.0%
!! GCTGCTTCTCTTTTAACTCA+AGG + chr2_4:57691279-57691298 None:intergenic 40.0%
!! GCATTTTGAAAGCCGAATGA+AGG - chr2_4:57691390-57691409 Msa0337640:intron 40.0%
TCGACTCAAGTTCCTTCATT+CGG + chr2_4:57691405-57691424 None:intergenic 40.0%
TCGAAAGAGAAGCAACATGA+AGG - chr2_4:57691421-57691440 Msa0337640:intron 40.0%
!! GCTTTTTGAAAGCCGAATGA+AGG - chr2_4:57691528-57691547 Msa0337640:intron 40.0%
AGAAATGCAATATGAAGGCC+GGG - chr2_4:57691564-57691583 Msa0337640:intron 40.0%
GCTGTTTGAAAGGCAAGTTA+AGG - chr2_4:57691654-57691673 Msa0337640:intron 40.0%
TGAAAGGCAAGTTAAGGAGT+TGG - chr2_4:57691660-57691679 Msa0337640:intron 40.0%
TCAATACCAGCTCCTTCATT+TGG + chr2_4:57691753-57691772 None:intergenic 40.0%
GCATTTCGAAAGTCGAATGA+AGG - chr2_4:57691780-57691799 Msa0337640:intron 40.0%
AAGAGAAGCAACATGAAGGT+CGG - chr2_4:57692067-57692086 Msa0337640:CDS 40.0%
TCCGAAGAGATGCAATTGAA+AGG - chr2_4:57692189-57692208 Msa0337640:CDS 40.0%
CTGGTTTCAGATCTATCACT+CGG + chr2_4:57692281-57692300 None:intergenic 40.0%
CTCACTCAGAATTTAAACCC+TGG - chr2_4:57692748-57692767 Msa0337640:CDS 40.0%
TATCCAGGAAAGCTTCAGTT+AGG + chr2_4:57692895-57692914 None:intergenic 40.0%
GACGAATATGGTTAACGCTA+TGG + chr2_4:57693012-57693031 None:intergenic 40.0%
TTTGCACACCACTTAAAAGC+TGG - chr2_4:57693052-57693071 Msa0337640:CDS 40.0%
GCAAAGATTAACCTGTTCTG+GGG - chr2_4:57693259-57693278 Msa0337640:five_prime_UTR 40.0%
CTTTCGCTATGCTTTCGCTA+TGG - chr2_4:57691073-57691092 Msa0337640:intron 45.0%
GGTAGAGCTATGTTTGATGG+AGG - chr2_4:57691094-57691113 Msa0337640:intron 45.0%
! ACTTGATTGAGAGTGCAGGA+AGG - chr2_4:57691117-57691136 Msa0337640:intron 45.0%
GCATTTGGAAAGCCAAGTGA+AGG - chr2_4:57691198-57691217 Msa0337640:intron 45.0%
GAAGGAGCTGGTGAATGAAT+TGG - chr2_4:57691216-57691235 Msa0337640:intron 45.0%
AAGAGAAGCAGCATGAAGGT+CGG - chr2_4:57691287-57691306 Msa0337640:intron 45.0%
AAGAGAAGCAACATGAAGGC+CGG - chr2_4:57691425-57691444 Msa0337640:intron 45.0%
TCGACTCAAGGTCCTTCATT+CGG + chr2_4:57691543-57691562 None:intergenic 45.0%
TGAATGTCAAGTGAAGGAGC+AGG - chr2_4:57691618-57691637 Msa0337640:intron 45.0%
! CCTTCATCCGGTCTTCATTT+TGG + chr2_4:57691825-57691844 None:intergenic 45.0%
CCAAAATGAAGACCGGATGA+AGG - chr2_4:57691822-57691841 Msa0337640:CDS 45.0%
TTGAGTCATGCTCCTTCATC+CGG + chr2_4:57691837-57691856 None:intergenic 45.0%
! CCTTTGTTTGGCCTTTGAGT+TGG + chr2_4:57691951-57691970 None:intergenic 45.0%
CCAACTCAAAGGCCAAACAA+AGG - chr2_4:57691948-57691967 Msa0337640:CDS 45.0%
AGAGAAGCAACATGAAGGTC+GGG - chr2_4:57692068-57692087 Msa0337640:CDS 45.0%
TGAAAGTAAAGTGGAGGAGC+TGG - chr2_4:57692122-57692141 Msa0337640:CDS 45.0%
!! GATGCATTTTGAAAGCCAGG+TGG - chr2_4:57692155-57692174 Msa0337640:CDS 45.0%
! CGAGTGATAGATCTGAAACC+AGG - chr2_4:57692279-57692298 Msa0337640:CDS 45.0%
! GATCTGAAACCAGGAACTGA+TGG - chr2_4:57692288-57692307 Msa0337640:CDS 45.0%
! AACTGATGGACACACTCTGA+CGG - chr2_4:57692302-57692321 Msa0337640:CDS 45.0%
! GAAGGTTGGTTGCTGTTCAT+CGG - chr2_4:57692326-57692345 Msa0337640:CDS 45.0%
CGAGCTGAAGCTATCAAAGA+CGG + chr2_4:57692381-57692400 None:intergenic 45.0%
TTCCAGTTTCGTCTCCAACT+AGG + chr2_4:57692425-57692444 None:intergenic 45.0%
GTTGCGAGCTGTGAAGATTA+TGG + chr2_4:57692448-57692467 None:intergenic 45.0%
CTGCATTCAAGTAGGATGTG+AGG - chr2_4:57692812-57692831 Msa0337640:CDS 45.0%
CAAGTAGGATGTGAGGAACT+AGG - chr2_4:57692819-57692838 Msa0337640:CDS 45.0%
AGGACACTGAGTCCTAACAT+TGG + chr2_4:57692875-57692894 None:intergenic 45.0%
TGTCCTAACTGAAGCTTTCC+TGG - chr2_4:57692889-57692908 Msa0337640:CDS 45.0%
CCTGCAGCTGGGATATATAT+GGG + chr2_4:57692974-57692993 None:intergenic 45.0%
CCATATATATCCCAGCTGCA+GGG - chr2_4:57692972-57692991 Msa0337640:CDS 45.0%
TGGTTAACGCTATGGATGCA+TGG + chr2_4:57693004-57693023 None:intergenic 45.0%
TGGTGTATAGTAAGTTGCCC+TGG - chr2_4:57693072-57693091 Msa0337640:CDS 45.0%
! GAGGACTTGATTGAGAGTGC+AGG - chr2_4:57691113-57691132 Msa0337640:intron 50.0%
CATTCACCAGCTCCTTCACT+TGG + chr2_4:57691213-57691232 None:intergenic 50.0%
GCAATTCGAGAGCGGAATGA+AGG - chr2_4:57691252-57691271 Msa0337640:intron 50.0%
AGAGAAGCAGCATGAAGGTC+GGG - chr2_4:57691288-57691307 Msa0337640:intron 50.0%
AGAGAAGCAACATGAAGGCC+GGG - chr2_4:57691426-57691445 Msa0337640:intron 50.0%
TCGATTCATGCTCCTCTACC+CGG + chr2_4:57691447-57691466 None:intergenic 50.0%
TTGATCTGTGCTCCTTCACC+CGG + chr2_4:57691585-57691604 None:intergenic 50.0%
CGAAAGCCAAATGAAGGAGC+TGG - chr2_4:57691744-57691763 Msa0337640:intron 50.0%
!! GCATTTTGAAAGCCAGGTGG+AGG - chr2_4:57692158-57692177 Msa0337640:CDS 50.0%
AGAGTGTGTCCATCAGTTCC+TGG + chr2_4:57692300-57692319 None:intergenic 50.0%
TCAAAGACGGCCATTCATCG+CGG + chr2_4:57692368-57692387 None:intergenic 50.0%
AACTAGGCATTCAGCGATGC+GGG + chr2_4:57692409-57692428 None:intergenic 50.0%
CAACTAGGCATTCAGCGATG+CGG + chr2_4:57692410-57692429 None:intergenic 50.0%
TGCCTAGTTGGAGACGAAAC+TGG - chr2_4:57692420-57692439 Msa0337640:CDS 50.0%
TTCACAGCTCGCAACGAACA+GGG - chr2_4:57692453-57692472 Msa0337640:CDS 50.0%
CCCATATATATCCCAGCTGC+AGG - chr2_4:57692971-57692990 Msa0337640:CDS 50.0%
CCCTGCAGCTGGGATATATA+TGG + chr2_4:57692975-57692994 None:intergenic 50.0%
CAGTAGCACCAGGTTTCATG+AGG + chr2_4:57693225-57693244 None:intergenic 50.0%
CGCAGAATTACAGTAGCACC+AGG + chr2_4:57693235-57693254 None:intergenic 50.0%
!! ACCTGTTCTGGGGACATATG+AGG - chr2_4:57693269-57693288 Msa0337640:five_prime_UTR 50.0%
CTGTGAGCTGTATACATCCC+CGG + chr2_4:57693309-57693328 None:intergenic 50.0%
GGAAAGCCAAGTGAAGGAGC+TGG - chr2_4:57691204-57691223 Msa0337640:intron 55.0%
GCAATATGAAGGCCGGGTGA+AGG - chr2_4:57691570-57691589 Msa0337640:intron 55.0%
GCAACATGAAGGTCGGGTGA+AGG - chr2_4:57692074-57692093 Msa0337640:CDS 55.0%
TGGACACACTCTGACGGTGA+AGG - chr2_4:57692308-57692327 Msa0337640:CDS 55.0%
CACACTCTGACGGTGAAGGT+TGG - chr2_4:57692312-57692331 Msa0337640:CDS 55.0%
CGCATCGCTGAATGCCTAGT+TGG - chr2_4:57692408-57692427 Msa0337640:CDS 55.0%
CTTCACAGCTCGCAACGAAC+AGG - chr2_4:57692452-57692471 Msa0337640:CDS 55.0%
ATGGTTGCAACCCTGCAGCT+GGG + chr2_4:57692985-57693004 None:intergenic 55.0%
GCAGTGGACCTCATGAAACC+TGG - chr2_4:57693214-57693233 Msa0337640:five_prime_UTR 55.0%
GCCTCATATGTCCCCAGAAC+AGG + chr2_4:57693273-57693292 None:intergenic 55.0%
!! GTTCTGGGGACATATGAGGC+TGG - chr2_4:57693273-57693292 Msa0337640:five_prime_UTR 55.0%
TGAGGCTGGCAGTTGATTGC+CGG - chr2_4:57693287-57693306 Msa0337640:five_prime_UTR 55.0%
GCAGCATGAAGGTCGGGTGA+AGG - chr2_4:57691294-57691313 Msa0337640:intron 60.0%
GCAACATGAAGGCCGGGTAG+AGG - chr2_4:57691432-57691451 Msa0337640:intron 60.0%
CGGATTTGAGCTCCTCCACC+TGG + chr2_4:57692173-57692192 None:intergenic 60.0%
AGGCATTCAGCGATGCGGGA+GGG + chr2_4:57692405-57692424 None:intergenic 60.0%
TAGGCATTCAGCGATGCGGG+AGG + chr2_4:57692406-57692425 None:intergenic 60.0%
CATGGTTGCAACCCTGCAGC+TGG + chr2_4:57692986-57693005 None:intergenic 60.0%
GAGGCTGGCAGTTGATTGCC+GGG - chr2_4:57693288-57693307 Msa0337640:five_prime_UTR 60.0%
AGGCTGGCAGTTGATTGCCG+GGG - chr2_4:57693289-57693308 Msa0337640:five_prime_UTR 60.0%
TTGCCCCCTGCCGCGATGAA+TGG - chr2_4:57692355-57692374 Msa0337640:CDS 65.0%
ACGGCCATTCATCGCGGCAG+GGG + chr2_4:57692362-57692381 None:intergenic 65.0%
GACGGCCATTCATCGCGGCA+GGG + chr2_4:57692363-57692382 None:intergenic 65.0%
AGACGGCCATTCATCGCGGC+AGG + chr2_4:57692364-57692383 None:intergenic 65.0%
GGCATTCAGCGATGCGGGAG+GGG + chr2_4:57692404-57692423 None:intergenic 65.0%
CGGCCATTCATCGCGGCAGG+GGG + chr2_4:57692361-57692380 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 57690878 57693408 57690878 ID=Msa0337640;Name=Msa0337640
chr2_4 mRNA 57690878 57693408 57690878 ID=Msa0337640-mRNA-1;Parent=Msa0337640;Name=Msa0337640-mRNA-1;_AED=0.20;_eAED=0.20;_QI=279|1|0.5|1|1|1|2|0|502
chr2_4 exon 57690878 57691068 57690878 ID=Msa0337640-mRNA-1:exon:17627;Parent=Msa0337640-mRNA-1
chr2_4 exon 57691812 57693408 57691812 ID=Msa0337640-mRNA-1:exon:17626;Parent=Msa0337640-mRNA-1
chr2_4 five_prime_UTR 57693130 57693408 57693130 ID=Msa0337640-mRNA-1:five_prime_utr;Parent=Msa0337640-mRNA-1
chr2_4 CDS 57691812 57693129 57691812 ID=Msa0337640-mRNA-1:cds;Parent=Msa0337640-mRNA-1
chr2_4 CDS 57690878 57691068 57690878 ID=Msa0337640-mRNA-1:cds;Parent=Msa0337640-mRNA-1
Gene Sequence

>Msa0337640

ATGGAGCTTTATCTAGTCATGGATGACATTTCAAAACAAAAGCATTTGGAAAGCCAAGTGAAGGAGCTGGTGAATGAATTGGTGTTGAGACAAAAGCAATTCGAGAGCGGAATGAAGGACCTTGAGTTAAAAGAGAAGCAGCATGAAGGTCGGGTGAAGGAGCATGAATCAAAAAATAGAGAATTTGAAGGTCAAGTGATAGATTTGGTGACTGATTTGGTATTAAAACAGAAGCATTTTGAAAGCCGAATGAAGGAACTTGAGTCGAAAGAGAAGCAACATGAAGGCCGGGTAGAGGAGCATGAATCGAAAAAGAGAGAATTTAAAAATCATGTGACGGAGCTAATGAATGATTTCGTATCGAAACAGAAGCTTTTTGAAAGCCGAATGAAGGACCTTGAGTCGAAAGAAATGCAATATGAAGGCCGGGTGAAGGAGCACAGATCAAAAGAGAGAGAATTTGAATGTCAAGTGAAGGAGCAGGAATCTAAACAGAAGCTGTTTGAAAGGCAAGTTAAGGAGTTGGAGTCAAAAGATAACCAACTTGTAAGTAAAATGAAGGAGTTTGAGTCAATAGAGAGAGAATTCGAAAGCCAAATGAAGGAGCTGGTATTGAAACAGAAGCATTTCGAAAGTCGAATGAAGGAACTTGAGTTGAAAGAGAACCAAAATGAAGACCGGATGAAGGAGCATGACTCAAAGAAGCGAGAATTTGAAGGTCAAGTGAAGGAGCTAGAATCTAAGAAGAAGCACTTTGACAGCCAAGTCAAACTGTTTGAGTCAAATTATAACCAACTCAAAGGCCAAACAAAGGAGTTCTTTTTAAAAGAGAGGGAATTTGAAAGCAAAATGAAGAAACTGGTAGTGAAAAAGAGACGTTTTGAAGGCCAGATGAAGATGTTTGAGTTGAAAGAGAAGCAACATGAAGGTCGGGTGAAGGAGCATGAATCAAGAGCTAGAGAATTTGAAAGTAAAGTGGAGGAGCTGGAATGTAAAAAGATGCATTTTGAAAGCCAGGTGGAGGAGCTCAAATCCGAAGAGATGCAATTGAAAGGACAAATTAAAGAATTTGAAGGCCAAATGAAGGAGTTTAAATCAAAAGCGAGAGAATTTTCTGAAGGCCGAGTGATAGATCTGAAACCAGGAACTGATGGACACACTCTGACGGTGAAGGTTGGTTGCTGTTCATCGGTGAAGATTGCCCCCTGCCGCGATGAATGGCCGTCTTTGATAGCTTCAGCTCGCCCCTCCCGCATCGCTGAATGCCTAGTTGGAGACGAAACTGGAACCATAATCTTCACAGCTCGCAACGAACAGGTGGACCTCATGAAACCTGGTGCTACTGTAATTCTGCGTAATGCAAAGATTAACCTGTTCTGGGGACATATGAGGCTGGCAGTTGATTGCCGGGGATGTATACAGCTCACAGAACCTGCAAGTTTTGAAGTTAGAGAGGATAACAATCTTTCACTAGATAAATATGATGAATTTAGTAGCCGATGTCGTTGA
Protein sequence

>Msa0337640

MELYLVMDDISKQKHLESQVKELVNELVLRQKQFESGMKDLELKEKQHEGRVKEHESKNREFEGQVIDLVTDLVLKQKHFESRMKELESKEKQHEGRVEEHESKKREFKNHVTELMNDFVSKQKLFESRMKDLESKEMQYEGRVKEHRSKEREFECQVKEQESKQKLFERQVKELESKDNQLVSKMKEFESIEREFESQMKELVLKQKHFESRMKELELKENQNEDRMKEHDSKKREFEGQVKELESKKKHFDSQVKLFESNYNQLKGQTKEFFLKEREFESKMKKLVVKKRRFEGQMKMFELKEKQHEGRVKEHESRAREFESKVEELECKKMHFESQVEELKSEEMQLKGQIKEFEGQMKEFKSKAREFSEGRVIDLKPGTDGHTLTVKVGCCSSVKIAPCRDEWPSLIASARPSRIAECLVGDETGTIIFTARNEQVDLMKPGATVILRNAKINLFWGHMRLAVDCRGCIQLTEPASFEVREDNNLSLDKYDEFSSRCR*