AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0300970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0300970 MtrunA17_Chr2g0326281 92.467 823 48 2 1 809 1 823 0.0 1533
Msa0300970 MtrunA17_Chr4g0029671 73.016 819 184 12 1 809 1 792 0.0 1137
Msa0300970 MtrunA17_Chr4g0046371 42.587 634 325 13 51 666 33 645 1.61e-148 452
Msa0300970 MtrunA17_Chr2g0282961 55.037 407 160 8 55 454 52 442 3.56e-141 430
Msa0300970 MtrunA17_Chr8g0385791 47.198 464 225 8 14 472 21 469 8.92e-136 423
Msa0300970 MtrunA17_Chr8g0385791 49.038 104 53 0 676 779 705 808 3.86e-29 124
Msa0300970 MtrunA17_Chr2g0276781 51.169 385 169 5 36 418 7 374 1.90e-126 394
Msa0300970 MtrunA17_Chr2g0276781 46.154 130 66 2 673 798 539 668 6.90e-27 117
Msa0300970 MtrunA17_Chr5g0433301 48.889 405 172 10 56 452 24 401 2.61e-112 362
Msa0300970 MtrunA17_Chr5g0433301 35.971 139 81 4 634 769 670 803 5.18e-18 89.0
Msa0300970 MtrunA17_Chr8g0346711 50.420 357 160 7 54 408 27 368 4.20e-112 356
Msa0300970 MtrunA17_Chr8g0346711 51.579 95 45 1 681 775 558 651 2.17e-23 105
Msa0300970 MtrunA17_Chr2g0285461 51.648 364 162 6 56 416 23 375 5.78e-112 362
Msa0300970 MtrunA17_Chr2g0285461 39.394 132 74 4 648 775 743 872 6.73e-20 95.1
Msa0300970 MtrunA17_Chr3g0109391 52.809 356 146 7 56 404 26 366 4.90e-111 358
Msa0300970 MtrunA17_Chr3g0109391 41.026 117 60 3 661 769 696 811 7.11e-18 88.6
Msa0300970 MtrunA17_Chr8g0376771 50.689 363 166 5 56 416 23 374 4.68e-110 357
Msa0300970 MtrunA17_Chr8g0376771 37.302 126 75 3 647 769 745 869 1.88e-18 90.5
Msa0300970 MtrunA17_Chr1g0156321 52.137 351 153 6 56 403 43 381 5.40e-108 350
Msa0300970 MtrunA17_Chr1g0156321 41.346 104 59 2 681 783 754 856 6.64e-17 85.5
Msa0300970 MtrunA17_Chr4g0009751 49.284 349 161 5 56 402 19 353 8.09e-108 343
Msa0300970 MtrunA17_Chr4g0009751 46.429 84 41 2 665 748 542 621 2.88e-14 76.6
Msa0300970 MtrunA17_Chr7g0239061 45.244 389 195 8 54 439 12 385 9.66e-107 342
Msa0300970 MtrunA17_Chr7g0239061 47.222 108 53 2 665 772 557 660 5.62e-23 104
Msa0300970 MtrunA17_Chr4g0070181 52.174 345 153 4 56 399 23 356 3.40e-102 340
Msa0300970 MtrunA17_Chr4g0070181 47.423 97 49 2 676 771 989 1084 2.52e-21 100
Msa0300970 MtrunA17_Chr2g0301251 51.014 345 157 4 56 399 23 356 2.48e-100 335
Msa0300970 MtrunA17_Chr2g0301251 47.423 97 49 2 676 771 981 1076 3.35e-20 96.7
Msa0300970 MtrunA17_Chr8g0389081 48.179 357 157 6 56 402 32 370 4.48e-92 312
Msa0300970 MtrunA17_Chr8g0389081 47.826 92 46 2 681 771 985 1075 3.10e-20 96.7
Msa0300970 MtrunA17_Chr2g0326761 41.732 381 168 10 56 398 11 375 4.22e-79 269
Msa0300970 MtrunA17_Chr1g0181211 36.930 417 201 9 56 428 27 425 2.43e-75 258
Msa0300970 MtrunA17_Chr1g0199681 37.887 388 192 6 56 408 94 467 3.81e-72 250
Msa0300970 MtrunA17_Chr4g0028971 37.783 397 187 7 56 408 12 392 2.81e-70 245
Msa0300970 MtrunA17_Chr7g0264171 36.408 412 198 10 56 418 31 427 2.44e-65 229
Msa0300970 MtrunA17_Chr7g0264161 39.241 316 175 7 65 378 1 301 7.84e-60 205
Msa0300970 MtrunA17_Chr3g0115271 36.317 391 195 10 56 406 19 395 3.07e-59 212
Msa0300970 MtrunA17_Chr8g0356211 42.358 229 124 3 176 402 2 224 4.55e-58 201
Msa0300970 MtrunA17_Chr5g0424931 33.090 411 221 12 36 415 2 389 2.49e-55 199
Msa0300970 MtrunA17_Chr5g0417281 34.146 369 207 12 56 416 11 351 2.37e-53 194
Msa0300970 MtrunA17_Chr5g0436761 34.748 377 203 12 56 420 12 357 8.16e-50 182
Msa0300970 MtrunA17_Chr5g0417211 35.342 365 189 15 56 410 12 339 2.23e-48 176
Msa0300970 MtrunA17_Chr2g0289221 33.234 334 180 9 56 378 20 321 9.36e-45 165
Msa0300970 MtrunA17_Chr1g0178011 28.726 369 239 7 56 420 12 360 4.94e-44 165
Msa0300970 MtrunA17_Chr2g0277461 29.091 385 248 8 56 437 13 375 1.60e-40 155
Msa0300970 MtrunA17_Chr5g0424741 30.052 386 224 14 56 408 12 384 5.00e-37 146
Msa0300970 MtrunA17_Chr2g0277531 31.250 336 191 15 51 378 15 318 6.34e-34 132
Msa0300970 MtrunA17_Chr5g0425661 33.014 209 128 3 56 264 37 233 2.14e-32 125
Msa0300970 MtrunA17_Chr5g0424801 28.652 356 223 11 56 402 12 345 4.15e-30 123
Msa0300970 MtrunA17_Chr5g0425261 29.412 357 219 13 56 402 12 345 1.12e-28 119
Msa0300970 MtrunA17_Chr7g0276471 36.111 108 68 1 166 273 116 222 3.69e-11 66.2
Msa0300970 MtrunA17_Chr1g0178071 30.247 162 107 3 167 322 75 236 5.13e-11 65.1
Msa0300970 MtrunA17_Chr8g0345771 36.697 109 67 2 154 262 158 264 6.67e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0300970 AT5G60450.2 58.409 767 275 12 50 809 35 764 0.0 827
Msa0300970 AT5G60450.1 58.453 763 273 12 54 809 63 788 0.0 825
Msa0300970 AT5G62000.2 36.501 863 440 21 14 806 29 853 9.26e-171 515
Msa0300970 AT5G62000.5 36.501 863 440 21 14 806 29 853 9.26e-171 515
Msa0300970 AT5G62000.3 36.501 863 440 21 14 806 29 853 9.26e-171 515
Msa0300970 AT5G62000.1 36.501 863 440 21 14 806 29 853 9.26e-171 515
Msa0300970 AT5G62000.4 37.260 832 419 20 14 775 29 827 1.65e-170 514
Msa0300970 AT2G33860.1 49.896 481 192 10 55 529 53 490 1.96e-147 446
Msa0300970 AT3G61830.1 47.222 396 186 8 43 430 12 392 2.09e-117 368
Msa0300970 AT3G61830.1 48.039 102 52 1 672 773 480 580 3.27e-23 105
Msa0300970 AT1G59750.4 49.727 366 169 5 56 418 22 375 3.45e-117 369
Msa0300970 AT1G59750.4 56.122 98 43 0 673 770 529 626 4.12e-28 121
Msa0300970 AT1G59750.2 49.727 366 169 5 56 418 22 375 3.89e-117 369
Msa0300970 AT1G59750.2 55.000 100 45 0 671 770 529 628 4.16e-28 121
Msa0300970 AT1G59750.1 49.727 366 169 5 56 418 22 375 5.27e-117 369
Msa0300970 AT1G59750.1 56.122 98 43 0 673 770 534 631 4.25e-28 121
Msa0300970 AT1G59750.3 49.727 366 169 5 56 418 22 375 5.27e-117 369
Msa0300970 AT1G59750.3 56.122 98 43 0 673 770 534 631 4.25e-28 121
Msa0300970 AT2G33860.2 50.413 363 150 5 167 529 1 333 8.85e-113 351
Msa0300970 AT2G46530.1 47.425 369 175 8 54 418 19 372 1.03e-110 351
Msa0300970 AT2G46530.1 43.200 125 66 2 645 769 458 577 5.16e-24 108
Msa0300970 AT5G37020.2 51.374 364 163 6 56 416 22 374 1.15e-110 356
Msa0300970 AT5G37020.2 50.725 69 32 2 681 748 705 772 2.80e-15 80.9
Msa0300970 AT2G46530.3 47.425 369 175 8 54 418 40 393 2.90e-110 350
Msa0300970 AT2G46530.3 43.200 125 66 2 645 769 479 598 6.96e-24 107
Msa0300970 AT5G37020.1 51.226 367 159 7 56 416 22 374 4.23e-110 355
Msa0300970 AT5G37020.1 46.667 90 46 2 681 769 705 793 2.06e-18 90.9
Msa0300970 AT1G30330.3 49.227 388 169 7 56 426 25 401 4.50e-110 358
Msa0300970 AT1G30330.3 45.098 102 52 3 671 769 784 884 9.10e-20 95.5
Msa0300970 AT1G30330.2 49.227 388 169 7 56 426 25 401 4.50e-110 358
Msa0300970 AT1G30330.2 45.098 102 52 3 671 769 784 884 9.10e-20 95.5
Msa0300970 AT1G30330.1 49.227 388 169 7 56 426 23 399 7.03e-110 358
Msa0300970 AT1G30330.1 45.098 102 52 3 671 769 782 882 9.48e-20 95.1
Msa0300970 AT4G23980.1 49.573 351 155 8 54 399 10 343 1.07e-104 336
Msa0300970 AT4G23980.1 52.000 100 47 1 673 772 515 613 5.20e-25 111
Msa0300970 AT4G23980.2 49.573 351 155 8 54 399 10 343 1.19e-104 336
Msa0300970 AT4G23980.2 52.000 100 47 1 673 772 513 611 4.98e-25 111
Msa0300970 AT3G61830.2 46.957 345 162 6 92 430 12 341 2.48e-102 327
Msa0300970 AT3G61830.2 48.039 102 52 1 672 773 429 529 2.25e-23 105
Msa0300970 AT1G19850.2 50.284 352 159 7 56 403 43 382 4.19e-102 336
Msa0300970 AT1G19850.2 43.434 99 54 2 673 770 774 871 1.67e-17 88.2
Msa0300970 AT1G19850.1 50.284 352 159 7 56 403 54 393 4.44e-102 336
Msa0300970 AT1G19850.1 43.434 99 54 2 673 770 785 882 1.73e-17 87.8
Msa0300970 AT1G19220.1 51.585 347 152 5 56 399 23 356 6.09e-100 334
Msa0300970 AT1G19220.1 45.133 113 56 3 676 783 953 1064 8.08e-22 102
Msa0300970 AT5G20730.2 51.009 347 154 5 56 399 24 357 2.75e-97 328
Msa0300970 AT5G20730.2 36.970 165 80 6 610 771 984 1127 7.70e-21 99.0
Msa0300970 AT5G20730.1 50.862 348 154 6 56 399 24 358 1.47e-95 323
Msa0300970 AT5G20730.1 36.970 165 80 6 610 771 985 1128 7.77e-21 99.0
Msa0300970 AT5G20730.3 50.862 348 154 6 56 399 24 358 1.59e-95 323
Msa0300970 AT5G20730.3 36.970 165 80 6 610 771 985 1128 8.78e-21 99.0
Msa0300970 AT1G35540.1 41.892 370 194 6 51 419 22 371 8.25e-90 296
Msa0300970 AT1G35540.1 29.885 261 127 7 515 769 387 597 5.82e-23 104
Msa0300970 AT1G34310.1 41.240 371 196 7 51 417 22 374 2.78e-87 288
Msa0300970 AT1G34310.1 47.706 109 55 2 653 760 482 589 1.04e-21 100
Msa0300970 AT1G34410.1 40.323 372 198 8 51 417 22 374 4.22e-86 286
Msa0300970 AT1G34410.1 51.579 95 45 1 673 767 503 596 3.39e-22 102
Msa0300970 AT5G37020.3 54.651 258 115 2 160 416 23 279 1.45e-85 287
Msa0300970 AT5G37020.3 46.667 90 46 2 681 769 610 698 1.56e-18 90.9
Msa0300970 AT1G35240.1 41.463 369 195 7 51 418 22 370 2.01e-85 283
Msa0300970 AT1G35240.1 50.526 95 46 1 673 767 489 582 8.98e-22 100
Msa0300970 AT1G34170.1 40.214 373 199 8 54 423 23 374 3.20e-85 280
Msa0300970 AT1G35520.1 41.463 369 195 7 51 418 22 370 3.85e-84 280
Msa0300970 AT1G35520.1 44.954 109 58 2 653 760 482 589 1.98e-20 96.7
Msa0300970 AT1G34390.1 41.667 384 198 10 51 430 22 383 1.27e-82 276
Msa0300970 AT1G34390.1 45.455 110 58 2 653 761 480 588 8.40e-20 94.7
Msa0300970 AT2G46530.2 48.659 261 128 4 160 418 29 285 2.19e-81 270
Msa0300970 AT2G46530.2 43.200 125 66 2 645 769 371 490 2.75e-24 108
Msa0300970 AT2G28350.2 38.795 415 199 7 56 428 10 411 2.93e-80 271
Msa0300970 AT2G28350.1 38.795 415 199 7 56 428 10 411 4.77e-80 272
Msa0300970 AT4G30080.1 38.776 392 188 8 56 410 19 395 4.79e-78 266
Msa0300970 AT1G34170.2 38.070 373 181 8 54 423 23 348 8.02e-74 249
Msa0300970 AT1G34170.3 38.070 373 181 8 54 423 23 348 6.40e-73 248
Msa0300970 AT1G34170.3 39.623 106 56 2 673 771 418 522 3.87e-17 86.3
Msa0300970 AT1G77850.2 29.461 482 278 10 57 502 20 475 6.09e-55 200
Msa0300970 AT1G77850.1 29.461 482 278 10 57 502 20 475 7.20e-55 199
Msa0300970 AT1G43950.1 44.037 218 104 5 51 267 22 222 6.39e-49 172
Msa0300970 AT4G01500.1 38.043 92 54 1 166 257 34 122 9.00e-12 67.8
Msa0300970 AT2G46870.1 32.353 170 93 6 143 309 10 160 9.89e-12 67.4
Msa0300970 AT1G01030.2 36.735 98 61 1 160 257 48 144 1.28e-11 67.4
Msa0300970 AT1G01030.1 36.735 98 61 1 160 257 48 144 1.61e-11 67.4
Msa0300970 AT1G13260.1 34.711 121 75 2 149 265 167 287 3.49e-11 66.2

Find 199 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATAGCTGACCTTCTTTC+TGG 0.139715 2_3:+56650261 None:intergenic
GTAAATCCTTGTAGACTATT+TGG 0.158429 2_3:-56648985 Msa0300970:CDS
AACCTCATCATTCTCCTTAT+TGG 0.160497 2_3:+56651861 None:intergenic
CTTCTTCTTGTGTATATATA+TGG 0.165929 2_3:+56648165 None:intergenic
TTTATCGGATACTACTAAAT+TGG 0.166759 2_3:+56652561 None:intergenic
AGCCAAAAGAATCTTGTTTC+TGG 0.202166 2_3:-56650795 Msa0300970:CDS
AACATTCTCTAGTTGGAAAT+TGG 0.212031 2_3:+56649170 None:intergenic
AGAAATGAAGTTGGAATATC+AGG 0.255023 2_3:-56649111 Msa0300970:CDS
TCATTGGAAATTCCAACTTA+TGG 0.267049 2_3:-56652049 Msa0300970:CDS
CTTCATCTTATCTTGAACTA+TGG 0.268353 2_3:-56652177 Msa0300970:CDS
AGCTGGAGACAGTGGGTTTA+TGG 0.268758 2_3:-56649655 Msa0300970:CDS
ACTACAACATTCCCTTTCTT+TGG 0.271823 2_3:+56652124 None:intergenic
TTCTTTGGAAGTGATGTTAA+AGG 0.285859 2_3:+56652139 None:intergenic
CCTGCAGCTTCTGCTTGTTT+CGG 0.298110 2_3:+56649079 None:intergenic
TTTGACTTGGGCCATTTATA+GGG 0.298149 2_3:+56650133 None:intergenic
CCCCAGAAACAAGATTCTTT+TGG 0.320379 2_3:+56650793 None:intergenic
AAACTTAACTTTCACTCATT+AGG 0.322689 2_3:-56649279 Msa0300970:CDS
AGTGAACTAGAGAGACTATT+TGG 0.331029 2_3:-56648724 Msa0300970:CDS
GTGATTTGGATCCCTATAAA+TGG 0.335220 2_3:-56650144 Msa0300970:CDS
TTTCCATTAACAGGCCAATA+AGG 0.336836 2_3:-56651875 Msa0300970:intron
AAATTATTGACACATTCATT+TGG 0.344864 2_3:+56647616 None:intergenic
GAAGTGGAGAAGATGACAAT+TGG 0.348700 2_3:-56648146 Msa0300970:CDS
CGGAAACGAACCGGTTTCCT+AGG 0.350274 2_3:-56649422 Msa0300970:CDS
TAGTTGGAAATTGGTTGGTT+TGG 0.350673 2_3:+56649179 None:intergenic
AATTATTGACACATTCATTT+GGG 0.358222 2_3:+56647617 None:intergenic
TGGTTACCAACAATTGATTC+AGG 0.358579 2_3:+56650578 None:intergenic
TTATCGGATACTACTAAATT+GGG 0.366808 2_3:+56652562 None:intergenic
TTCACCTACCTCGATAAATA+TGG 0.367329 2_3:+56650942 None:intergenic
CTGCAGTGAGTTCTGTGTTA+TGG 0.372350 2_3:-56648198 Msa0300970:intron
ATTCAAAATGAAATTTGAAA+TGG 0.374517 2_3:-56650292 Msa0300970:CDS
TTGATCTAAACCTTAACTCT+TGG 0.379579 2_3:-56649350 Msa0300970:CDS
CCACCTGCTTCTAAACCTTC+AGG 0.382333 2_3:+56651395 None:intergenic
ATAAATGGCCCAAGTCAAAA+TGG 0.382489 2_3:-56650129 Msa0300970:CDS
GCCAAAAGAATCTTGTTTCT+GGG 0.385570 2_3:-56650794 Msa0300970:CDS
GGGACGCAGTGCTCTTTCTA+AGG 0.386238 2_3:-56650773 Msa0300970:intron
TGATCTAAACCTTAACTCTT+GGG 0.391011 2_3:-56649349 Msa0300970:CDS
TAAATGAAACATTCTCTAGT+TGG 0.401148 2_3:+56649163 None:intergenic
ATGTGAGAAGCTAACTTTGT+AGG 0.405019 2_3:+56651353 None:intergenic
TGACAGTGAAAATGACATTA+TGG 0.405346 2_3:-56648650 Msa0300970:CDS
TCAGTTAGCAGGGATGTGTT+TGG 0.410443 2_3:-56651429 Msa0300970:intron
GGTTTAGAAGCAGGTGGAGA+GGG 0.411642 2_3:-56651389 Msa0300970:CDS
ATTTCTGCTGCTGCTTCTCT+AGG 0.415866 2_3:-56649051 Msa0300970:CDS
TTGGTAAGGCACAACGAAAT+CGG 0.417321 2_3:+56650359 None:intergenic
CATACTAATCTTGCATCAAA+TGG 0.420961 2_3:-56649507 Msa0300970:CDS
TAATGAGTGAAAGTTAAGTT+TGG 0.421167 2_3:+56649281 None:intergenic
GATTCAGGAAGACCGTTTCT+CGG 0.422054 2_3:+56650593 None:intergenic
CACAAACAAAGGAGCTTAGT+TGG 0.424467 2_3:-56648793 Msa0300970:CDS
TTAACATCACTTCCAAAGAA+AGG 0.425871 2_3:-56652136 Msa0300970:CDS
TGATGATAACCAGAGTTGTT+TGG 0.426706 2_3:-56648114 Msa0300970:CDS
TTGTGTTGCATTCAGTTAGC+AGG 0.431661 2_3:-56651440 Msa0300970:intron
GTCAAAATGGAGATGCTTGA+TGG 0.432058 2_3:-56650116 Msa0300970:intron
AAAATGACATTATGGTTGTT+GGG 0.432406 2_3:-56648642 Msa0300970:CDS
AGGATTCTCCATCCTTTGTC+AGG 0.432653 2_3:+56648679 None:intergenic
AAGTGGAGAAGATGACAATT+GGG 0.436343 2_3:-56648145 Msa0300970:CDS
GAACTATGGCATTCTTGTGC+TGG 0.437430 2_3:-56652163 Msa0300970:CDS
AATACTCCTTCAGCTCAGAT+AGG 0.438938 2_3:-56649141 Msa0300970:CDS
TTCTAGTTATGCAGACTTCA+CGG 0.440375 2_3:-56649442 Msa0300970:CDS
CAGACTTCACGGAAACGAAC+CGG 0.444346 2_3:-56649431 Msa0300970:CDS
ACTACTGTTGGAGAAGAATC+TGG 0.448069 2_3:+56648041 None:intergenic
TTAGATCAACCTTTCCTGCC+AGG 0.450136 2_3:+56649364 None:intergenic
AGTGACTGGAATGAGTGATT+TGG 0.450736 2_3:-56650158 Msa0300970:CDS
TTCTTGACCTTGCAAGACCT+TGG 0.450899 2_3:+56649608 None:intergenic
TCGACAAGATTGAATGTTCA+AGG 0.452440 2_3:+56649816 None:intergenic
ATCAAGATAGAGTCTCTCCT+TGG 0.455503 2_3:-56649867 Msa0300970:CDS
GGTCTTCCTGAATCAATTGT+TGG 0.457519 2_3:-56650584 Msa0300970:CDS
TTGGATTCATACCAGTGATA+AGG 0.459048 2_3:+56649746 None:intergenic
GCCTCTGATACCAGCACTCA+TGG 0.459057 2_3:-56651311 Msa0300970:CDS
GTGAAGTCTGCATAACTAGA+AGG 0.460590 2_3:+56649444 None:intergenic
AAAAGTATGCTAAAAGCATC+AGG 0.463277 2_3:-56650338 Msa0300970:CDS
TAAGTTTGGTTGCATTATGC+AGG 0.464035 2_3:+56649295 None:intergenic
GAAGCAGGTGGAGAGGGAGA+TGG 0.465289 2_3:-56651383 Msa0300970:CDS
ACAACCCTACAAAAGATTTG+TGG 0.468787 2_3:+56652019 None:intergenic
GGTGGTTTCCGCCGCCGATA+AGG 0.472069 2_3:+56648957 None:intergenic
TAACATCACTTCCAAAGAAA+GGG 0.474815 2_3:-56652135 Msa0300970:CDS
GTAGTGAGCAGATGCCTCCT+TGG 0.475837 2_3:+56650837 None:intergenic
TTCTCTAGTTGGAAATTGGT+TGG 0.476906 2_3:+56649174 None:intergenic
ACTTTGTGTATATCACCATA+TGG 0.477775 2_3:+56649228 None:intergenic
GAAAATGACATTATGGTTGT+TGG 0.484036 2_3:-56648643 Msa0300970:CDS
CTTGCAAGACCCTAGGAAAC+CGG 0.485163 2_3:+56649412 None:intergenic
TTTGAAGCCTCCACAATCAA+TGG 0.488117 2_3:+56648083 None:intergenic
TCCTAGTTTCCTTTCTTCAG+TGG 0.491250 2_3:-56650546 Msa0300970:CDS
TTTAGTAAAACTTACTGCCA+TGG 0.494050 2_3:+56648613 None:intergenic
TACTTTGCTTCCACAGGCAG+AGG 0.504284 2_3:-56651827 Msa0300970:intron
AGGAGGCATCTGCTCACTAC+TGG 0.505121 2_3:-56650834 Msa0300970:CDS
CATACCAGTGATAAGGTGAC+TGG 0.506398 2_3:+56649753 None:intergenic
GGCATCTGCTCACTACTGGC+TGG 0.509364 2_3:-56650830 Msa0300970:CDS
AACTAGATTCTAACTACTGT+TGG 0.511297 2_3:+56648029 None:intergenic
TATATCACCATATGGAAAAG+AGG 0.512064 2_3:+56649236 None:intergenic
ATCTTGTCCCTATGGTCAGT+GGG 0.513478 2_3:+56650313 None:intergenic
TGTGGTTGAAGACCATAAGT+TGG 0.513554 2_3:+56652037 None:intergenic
GAGCCTGAAGGTTTAGAAGC+AGG 0.515631 2_3:-56651398 Msa0300970:CDS
GTGATATTACACAGGTCCGA+TGG 0.515735 2_3:-56649912 Msa0300970:intron
ATTCTTCTTAACTTGTGTTG+TGG 0.515801 2_3:+56652306 None:intergenic
ATAATTTGTGTAACTAACAT+TGG 0.517422 2_3:+56649320 None:intergenic
AATCTTGTCCCTATGGTCAG+TGG 0.518063 2_3:+56650312 None:intergenic
ATTGAGCAGCTACAATGATC+TGG 0.518918 2_3:-56648749 Msa0300970:CDS
TGAAAACGGAGAGTTAAGAT+TGG 0.519467 2_3:-56650636 Msa0300970:CDS
AGAGCTGCTCGACCGAGAAA+CGG 0.520377 2_3:-56650605 Msa0300970:CDS
TAAGAGATCCTGACAAAGGA+TGG 0.521003 2_3:-56648687 Msa0300970:CDS
CTTCTCTAGGTGCAAACTTG+AGG 0.522379 2_3:-56649038 Msa0300970:CDS
ATTGAGATCCCTGGCAGGAA+AGG 0.523346 2_3:-56649373 Msa0300970:CDS
TCTTGACCTTGCAAGACCCT+AGG 0.523482 2_3:+56649405 None:intergenic
GGTGCATTGAGAAATGAAGT+TGG 0.523787 2_3:-56649120 Msa0300970:CDS
TATATATACACAAGAAGAAG+TGG 0.530321 2_3:-56648162 Msa0300970:CDS
TCTCTATGTAGGGGTGAAAA+CGG 0.532577 2_3:-56650650 Msa0300970:intron
TCAAGATAGAGTCTCTCCTT+GGG 0.533378 2_3:-56649866 Msa0300970:CDS
TTCATCTTCTAGTTCCACTT+CGG 0.534499 2_3:-56652209 Msa0300970:CDS
TCAGGAACCCACTGACCATA+GGG 0.535798 2_3:-56650320 Msa0300970:CDS
TAGCATTAGCCACTGAAGAA+AGG 0.540509 2_3:+56650537 None:intergenic
CCGAAACAAGCAGAAGCTGC+AGG 0.542656 2_3:-56649079 Msa0300970:CDS
ACAGGTTACTTTGCTTCCAC+AGG 0.543725 2_3:-56651833 Msa0300970:CDS
TAGATCAACCTTTCCTGCCA+GGG 0.544208 2_3:+56649365 None:intergenic
TGTAGTAGCGGTATAGTGAC+TGG 0.545183 2_3:-56650172 Msa0300970:CDS
TATGGTGATATACACAAAGT+TGG 0.548146 2_3:-56649225 Msa0300970:CDS
GAAAACGGAGAGTTAAGATT+GGG 0.548310 2_3:-56650635 Msa0300970:CDS
TGGATGAATCTCCAGAAAGA+AGG 0.548781 2_3:-56650272 Msa0300970:intron
TTTCCTGCCAGGGATCTCAA+TGG 0.549270 2_3:+56649375 None:intergenic
GAGAGACTATTTGGCATGGA+AGG 0.550692 2_3:-56648715 Msa0300970:CDS
GCTCAATCTTGAGAGATCAA+TGG 0.551608 2_3:+56648765 None:intergenic
TGAAGAAACAAGAGCCGAAG+TGG 0.552863 2_3:+56652195 None:intergenic
AATATATCCATTGAGATCCC+TGG 0.553252 2_3:-56649382 Msa0300970:CDS
GGAACATACACCATTGATTG+TGG 0.553625 2_3:-56648093 Msa0300970:CDS
AGGCTGAAGAAACTGCGGAC+GGG 0.554562 2_3:-56649793 Msa0300970:CDS
TACACAGGTCCGATGGGATG+AGG 0.555224 2_3:-56649905 Msa0300970:intron
GGAAACTAGGAGAACAACTC+TGG 0.556326 2_3:+56650558 None:intergenic
TGAACATTCAATCTTGTCGA+AGG 0.558866 2_3:-56649813 Msa0300970:CDS
AGGCTGAACCCTCGTAAACT+CGG 0.559216 2_3:+56649464 None:intergenic
AGAAAACCCTCCATGAGTGC+TGG 0.560225 2_3:+56651301 None:intergenic
AAGAAGAATATATGTTGCAA+TGG 0.561906 2_3:-56652292 Msa0300970:CDS
TGTGTTGCATTCAGTTAGCA+GGG 0.565461 2_3:-56651439 Msa0300970:intron
GAAAATCCAAATAGTCTACA+AGG 0.566058 2_3:+56648979 None:intergenic
GCTTCAAAGTCTTCCTCAGT+GGG 0.567657 2_3:-56648068 Msa0300970:CDS
CCAAAAGAATCTTGTTTCTG+GGG 0.569533 2_3:-56650793 Msa0300970:CDS
TGATATTACACAGGTCCGAT+GGG 0.571325 2_3:-56649911 Msa0300970:intron
CCGATGGGATGAGGATATTG+AGG 0.572780 2_3:-56649896 Msa0300970:CDS
GCCACTGAAGAAAGGAAACT+AGG 0.575196 2_3:+56650545 None:intergenic
CGACAAGATTGAATGTTCAA+GGG 0.577787 2_3:+56649817 None:intergenic
GTGTATGTTCCAAACAACTC+TGG 0.578457 2_3:+56648105 None:intergenic
TGGTTGTTGGGGATGATCCA+TGG 0.581281 2_3:-56648630 Msa0300970:CDS
GAATGAAGGTTCACAAACAA+AGG 0.584254 2_3:-56648804 Msa0300970:intron
TCACCCAGTCACCTTATCAC+TGG 0.584443 2_3:-56649757 Msa0300970:intron
CAACTAGACTAATTTATCCT+CGG 0.585383 2_3:-56652481 Msa0300970:five_prime_UTR
ATCAGGAACCCACTGACCAT+AGG 0.589785 2_3:-56650321 Msa0300970:CDS
GCATGCATGGCTGAAACTCA+CGG 0.592234 2_3:-56647877 Msa0300970:intron
TATCCATTGAGATCCCTGGC+AGG 0.592828 2_3:-56649378 Msa0300970:CDS
TTCATCGCAGCTGGAGACAG+TGG 0.594260 2_3:-56649663 Msa0300970:intron
AGGTTTAGAAGCAGGTGGAG+AGG 0.594537 2_3:-56651390 Msa0300970:CDS
ATTTCCACTCCACACCATGC+AGG 0.596067 2_3:+56650969 None:intergenic
TCATCGCAGCTGGAGACAGT+GGG 0.597361 2_3:-56649662 Msa0300970:intron
AATGCACCTATCTGAGCTGA+AGG 0.597701 2_3:+56649135 None:intergenic
CGGTTTCCTAGGGTCTTGCA+AGG 0.598452 2_3:-56649411 Msa0300970:CDS
TATAGACAAAGTCGCATGCA+TGG 0.598979 2_3:-56647890 Msa0300970:three_prime_UTR
AATCTTTGTCAGGTCAGCCA+AGG 0.599067 2_3:-56650854 Msa0300970:intron
AAGATTGAATGTTCAAGGGA+GGG 0.602810 2_3:+56649821 None:intergenic
TCCATGAGTGCTGGTATCAG+AGG 0.602998 2_3:+56651310 None:intergenic
TTACTTCTTCCGAGTTTACG+AGG 0.603395 2_3:-56649473 Msa0300970:CDS
GATATACACAAAGTTGGTCA+AGG 0.608483 2_3:-56649219 Msa0300970:CDS
GATCTAAACCTTAACTCTTG+GGG 0.609198 2_3:-56649348 Msa0300970:CDS
AAATGACATTATGGTTGTTG+GGG 0.611574 2_3:-56648641 Msa0300970:CDS
TTTGCAACAAGCTCTTGAGA+GGG 0.613596 2_3:+56650995 None:intergenic
GGCTTCAAAGTCTTCCTCAG+TGG 0.617874 2_3:-56648069 Msa0300970:CDS
GGAAACGAACCGGTTTCCTA+GGG 0.618178 2_3:-56649421 Msa0300970:CDS
AGATCGACCAAGGTCTTGCA+AGG 0.618905 2_3:-56649615 Msa0300970:CDS
TGTCATACTCATACCAAAGG+AGG 0.620459 2_3:+56651248 None:intergenic
CTGATACCAGCACTCATGGA+GGG 0.625106 2_3:-56651307 Msa0300970:CDS
CCTCAATATCCTCATCCCAT+CGG 0.625293 2_3:+56649896 None:intergenic
ATAAAACCTACCTCTGCCTG+TGG 0.625761 2_3:+56651817 None:intergenic
CTTTGTCAGGTCAGCCAAGG+AGG 0.625815 2_3:-56650851 Msa0300970:intron
ACTTGTTCCAAATGACCTTG+TGG 0.628653 2_3:+56652094 None:intergenic
TTGGATGACAAAGAGCCTGA+AGG 0.629150 2_3:-56651410 Msa0300970:CDS
CAAGATTGAATGTTCAAGGG+AGG 0.630768 2_3:+56649820 None:intergenic
ACTAGAGAGACTATTTGGCA+TGG 0.631155 2_3:-56648719 Msa0300970:CDS
TACTTCTTCCGAGTTTACGA+GGG 0.633533 2_3:-56649472 Msa0300970:CDS
CCTGAAGGTTTAGAAGCAGG+TGG 0.635598 2_3:-56651395 Msa0300970:CDS
AAGGGAGGGAGAGAAGTAGA+CGG 0.635894 2_3:+56649835 None:intergenic
GAATGATGAGGTTTACACAC+AGG 0.638216 2_3:-56651851 Msa0300970:CDS
TGCAAAAGACCTGCATGGTG+TGG 0.639765 2_3:-56650978 Msa0300970:CDS
GATTATATTGCATAGAGACA+AGG 0.642392 2_3:+56647995 None:intergenic
AAGACCTGCATGGTGTGGAG+TGG 0.642527 2_3:-56650973 Msa0300970:CDS
ACATACACCATTGATTGTGG+AGG 0.643124 2_3:-56648090 Msa0300970:CDS
ATGTCTTGCAGGTGTAGTAG+CGG 0.648254 2_3:-56650184 Msa0300970:intron
CTTCTAAGAGATCCTGACAA+AGG 0.649192 2_3:-56648691 Msa0300970:CDS
AACTCACATACACAATTGTG+AGG 0.650691 2_3:-56647653 Msa0300970:intron
TCTAAATTAATCTTATATCG+AGG 0.652217 2_3:-56652530 Msa0300970:five_prime_UTR
GAACTAGAAGATGAACATGT+TGG 0.654160 2_3:+56652217 None:intergenic
AAGGCTGAAGAAACTGCGGA+CGG 0.656866 2_3:-56649794 Msa0300970:CDS
TGCTAAAAGAAGTTGCACGA+AGG 0.662737 2_3:-56648914 Msa0300970:intron
AAATTTCGCCATATTTATCG+AGG 0.663380 2_3:-56650950 Msa0300970:intron
GTAGACGGATCGATCTCCCA+AGG 0.663808 2_3:+56649850 None:intergenic
GGCCAATAAGGAGAATGATG+AGG 0.666485 2_3:-56651863 Msa0300970:CDS
ATACCAGTGATAAGGTGACT+GGG 0.667650 2_3:+56649754 None:intergenic
GTCGAAGGCTGAAGAAACTG+CGG 0.672621 2_3:-56649798 Msa0300970:CDS
AAACCGCGAGAAAATTGTGA+GGG 0.682065 2_3:-56652439 Msa0300970:five_prime_UTR
CAATCTTCAGCAGCTCGACG+AGG 0.685556 2_3:+56651275 None:intergenic
TCTGATACCAGCACTCATGG+AGG 0.685802 2_3:-56651308 Msa0300970:CDS
TGAGTCTATAAGATCGACCA+AGG 0.694503 2_3:-56649625 Msa0300970:CDS
CTTGTTGCAAAAGACCTGCA+TGG 0.711702 2_3:-56650983 Msa0300970:CDS
TAAACCGCGAGAAAATTGTG+AGG 0.716124 2_3:-56652440 Msa0300970:five_prime_UTR
AGAATCTGGCTGTCCCACTG+AGG 0.716343 2_3:+56648055 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATTTATACTGATTTAA+TGG + chr2_3:56651629-56651648 None:intergenic 10.0%
!!! GTTTTATGGTTTAATATATT+TGG - chr2_3:56648366-56648385 Msa0300970:intron 15.0%
!! AACATATTAAATATACATGT+GGG + chr2_3:56649758-56649777 None:intergenic 15.0%
!! AAACATATTAAATATACATG+TGG + chr2_3:56649759-56649778 None:intergenic 15.0%
!! ATTCAAAATGAAATTTGAAA+TGG - chr2_3:56649875-56649894 Msa0300970:CDS 15.0%
!! TATTAATGTAATGTTTAGAA+AGG + chr2_3:56650191-56650210 None:intergenic 15.0%
!!! ATTTGAAATATAATATCACA+AGG + chr2_3:56651851-56651870 None:intergenic 15.0%
!! TGATATTATATTTCAAATGT+CGG - chr2_3:56651853-56651872 Msa0300970:CDS 15.0%
!! TCTAAATTAATCTTATATCG+AGG - chr2_3:56647637-56647656 Msa0300970:three_prime_UTR 20.0%
!!! GTATATTTTTTTCCATTAAC+AGG - chr2_3:56648283-56648302 Msa0300970:intron 20.0%
!!! ATTTCTTTTTTGATGCATTT+TGG - chr2_3:56648393-56648412 Msa0300970:intron 20.0%
!!! GTTTGGTTTTCATTAAAAAT+TGG - chr2_3:56648415-56648434 Msa0300970:intron 20.0%
!!! AGTTTTATGTCACTATATTA+TGG - chr2_3:56650588-56650607 Msa0300970:CDS 20.0%
!!! ATAATTTGTGTAACTAACAT+TGG + chr2_3:56650850-56650869 None:intergenic 20.0%
!! ATTCATATCACAATATAACT+CGG + chr2_3:56651295-56651314 None:intergenic 20.0%
!! ATGTAATATACAATGAATGA+AGG - chr2_3:56651349-56651368 Msa0300970:CDS 20.0%
!!! TTCTTTTGTCTATTTGTAAA+TGG - chr2_3:56651582-56651601 Msa0300970:intron 20.0%
!! ATTTCAAAATATCGATCTAA+TGG - chr2_3:56651645-56651664 Msa0300970:intron 20.0%
!! ACCATTGAATAAATATCATA+TGG - chr2_3:56651770-56651789 Msa0300970:intron 20.0%
!! ACCATATGATATTTATTCAA+TGG + chr2_3:56651774-56651793 None:intergenic 20.0%
!! GATATTATATTTCAAATGTC+GGG - chr2_3:56651854-56651873 Msa0300970:CDS 20.0%
!! AATTATTGACACATTCATTT+GGG + chr2_3:56652553-56652572 None:intergenic 20.0%
!! AAATTATTGACACATTCATT+TGG + chr2_3:56652554-56652573 None:intergenic 20.0%
! TTATCGGATACTACTAAATT+GGG + chr2_3:56647608-56647627 None:intergenic 25.0%
! TTTATCGGATACTACTAAAT+TGG + chr2_3:56647609-56647628 None:intergenic 25.0%
!!! TTAACACCAACAATGTTTTT+TGG + chr2_3:56647820-56647839 None:intergenic 25.0%
!!! AAAAACATTGTTGGTGTTAA+TGG - chr2_3:56647820-56647839 Msa0300970:intron 25.0%
! AAGAAGAATATATGTTGCAA+TGG - chr2_3:56647875-56647894 Msa0300970:intron 25.0%
!!! TTTTTTGATGCATTTTGGTT+TGG - chr2_3:56648398-56648417 Msa0300970:intron 25.0%
!! CATTAAAAATTGGCAAGTTT+TGG - chr2_3:56648425-56648444 Msa0300970:intron 25.0%
! TCATGTATAACACTAGTATT+TGG + chr2_3:56648660-56648679 None:intergenic 25.0%
!!! CTGTTTATTTTCACTTCTTT+AGG - chr2_3:56649132-56649151 Msa0300970:CDS 25.0%
! TGAAACAGAAATATTGTGAT+TGG - chr2_3:56649244-56649263 Msa0300970:CDS 25.0%
!!! TTTCTTGTTTTGCAAAATGT+TGG - chr2_3:56649715-56649734 Msa0300970:intron 25.0%
! ATGTTGTAGAATACAGATAA+TGG + chr2_3:56649951-56649970 None:intergenic 25.0%
! TTACGATCGTATTATACATT+TGG - chr2_3:56650116-56650135 Msa0300970:intron 25.0%
! ATTTAGTTATCTCGTACATT+TGG + chr2_3:56650443-56650462 None:intergenic 25.0%
! TAATGAGTGAAAGTTAAGTT+TGG + chr2_3:56650889-56650908 None:intergenic 25.0%
! AAACTTAACTTTCACTCATT+AGG - chr2_3:56650888-56650907 Msa0300970:intron 25.0%
! TAAATGAAACATTCTCTAGT+TGG + chr2_3:56651007-56651026 None:intergenic 25.0%
!! ACTATTTGGATTTTCCTTAT+CGG - chr2_3:56651196-56651215 Msa0300970:intron 25.0%
! ATTGTATATTACATATGCGT+TGG + chr2_3:56651343-56651362 None:intergenic 25.0%
! AAAATGACATTATGGTTGTT+GGG - chr2_3:56651525-56651544 Msa0300970:intron 25.0%
! ATAGGATAGAATGATTCAAT+AGG + chr2_3:56651894-56651913 None:intergenic 25.0%
! CTATCCTATGTAACATATTA+TGG - chr2_3:56651905-56651924 Msa0300970:intron 25.0%
! TCATCCATAATATGTTACAT+AGG + chr2_3:56651912-56651931 None:intergenic 25.0%
! CTTCTTCTTGTGTATATATA+TGG + chr2_3:56652005-56652024 None:intergenic 25.0%
! TATATATACACAAGAAGAAG+TGG - chr2_3:56652005-56652024 Msa0300970:CDS 25.0%
! CCAAACAAAAATATATTGAC+AGG + chr2_3:56652255-56652274 None:intergenic 25.0%
!!! CCTGTCAATATATTTTTGTT+TGG - chr2_3:56652252-56652271 Msa0300970:CDS 25.0%
CAACTAGACTAATTTATCCT+CGG - chr2_3:56647686-56647705 Msa0300970:intron 30.0%
!! TCTATGATATTTTTGTACCG+AGG + chr2_3:56647706-56647725 None:intergenic 30.0%
AACCAACCAAAAAACATTGT+TGG - chr2_3:56647811-56647830 Msa0300970:intron 30.0%
!! ATTCTTCTTAACTTGTGTTG+TGG + chr2_3:56647864-56647883 None:intergenic 30.0%
CTTCATCTTATCTTGAACTA+TGG - chr2_3:56647990-56648009 Msa0300970:three_prime_UTR 30.0%
! TTCTTTGGAAGTGATGTTAA+AGG + chr2_3:56648031-56648050 None:intergenic 30.0%
TTAACATCACTTCCAAAGAA+AGG - chr2_3:56648031-56648050 Msa0300970:CDS 30.0%
TAACATCACTTCCAAAGAAA+GGG - chr2_3:56648032-56648051 Msa0300970:CDS 30.0%
!! GTTGTAGTTTATTTTCCACA+AGG - chr2_3:56648058-56648077 Msa0300970:CDS 30.0%
! TTATTTTCCACAAGGTCATT+TGG - chr2_3:56648066-56648085 Msa0300970:CDS 30.0%
! TTTGTCTCTCTTTTCTTCAT+TGG - chr2_3:56648102-56648121 Msa0300970:CDS 30.0%
TCATTGGAAATTCCAACTTA+TGG - chr2_3:56648118-56648137 Msa0300970:CDS 30.0%
! TTCAACCACAAATCTTTTGT+AGG - chr2_3:56648143-56648162 Msa0300970:CDS 30.0%
! TCAACCACAAATCTTTTGTA+GGG - chr2_3:56648144-56648163 Msa0300970:CDS 30.0%
TGATACACATCATTGATGAA+TGG - chr2_3:56648523-56648542 Msa0300970:intron 30.0%
!!! TTTTTTGAGTTCAGCTATTG+AGG + chr2_3:56648588-56648607 None:intergenic 30.0%
AGATTCATAGTTACCTTATG+AGG + chr2_3:56648708-56648727 None:intergenic 30.0%
! GCTTATTTGAGTTTATCTAC+TGG - chr2_3:56648962-56648981 Msa0300970:CDS 30.0%
! ATTTTCTGACCTGAAATTGT+TGG - chr2_3:56649085-56649104 Msa0300970:CDS 30.0%
AAATTTCGCCATATTTATCG+AGG - chr2_3:56649217-56649236 Msa0300970:CDS 30.0%
ACAGAAATATTGTGATTGGT+TGG - chr2_3:56649248-56649267 Msa0300970:CDS 30.0%
!! AACATGAAACATGCTTTTTG+CGG + chr2_3:56649659-56649678 None:intergenic 30.0%
! CTTTTAGCATACTTTTGGTA+AGG + chr2_3:56649825-56649844 None:intergenic 30.0%
! TGATGCTTTTAGCATACTTT+TGG + chr2_3:56649830-56649849 None:intergenic 30.0%
!! AAAAGTATGCTAAAAGCATC+AGG - chr2_3:56649829-56649848 Msa0300970:CDS 30.0%
! ATATCATTTTCATGTCTTGC+AGG - chr2_3:56649972-56649991 Msa0300970:intron 30.0%
TTGATTAAGCTCTCATCATT+TGG + chr2_3:56650223-56650242 None:intergenic 30.0%
TTAGGACACAATAAGTTTAG+TGG + chr2_3:56650474-56650493 None:intergenic 30.0%
CATACTAATCTTGCATCAAA+TGG - chr2_3:56650660-56650679 Msa0300970:intron 30.0%
TTGATCTAAACCTTAACTCT+TGG - chr2_3:56650817-56650836 Msa0300970:CDS 30.0%
TGATCTAAACCTTAACTCTT+GGG - chr2_3:56650818-56650837 Msa0300970:CDS 30.0%
! CAAAATTCCTCTTTTCCATA+TGG - chr2_3:56650924-56650943 Msa0300970:intron 30.0%
TATATCACCATATGGAAAAG+AGG + chr2_3:56650934-56650953 None:intergenic 30.0%
ACTTTGTGTATATCACCATA+TGG + chr2_3:56650942-56650961 None:intergenic 30.0%
TATGGTGATATACACAAAGT+TGG - chr2_3:56650942-56650961 Msa0300970:intron 30.0%
AACATTCTCTAGTTGGAAAT+TGG + chr2_3:56651000-56651019 None:intergenic 30.0%
AGAAATGAAGTTGGAATATC+AGG - chr2_3:56651056-56651075 Msa0300970:intron 30.0%
GTAAATCCTTGTAGACTATT+TGG - chr2_3:56651182-56651201 Msa0300970:intron 30.0%
GAAAATCCAAATAGTCTACA+AGG + chr2_3:56651191-56651210 None:intergenic 30.0%
TGACAGTGAAAATGACATTA+TGG - chr2_3:56651517-56651536 Msa0300970:intron 30.0%
GAAAATGACATTATGGTTGT+TGG - chr2_3:56651524-56651543 Msa0300970:intron 30.0%
AAATGACATTATGGTTGTTG+GGG - chr2_3:56651526-56651545 Msa0300970:intron 30.0%
TTTAGTAAAACTTACTGCCA+TGG + chr2_3:56651557-56651576 None:intergenic 30.0%
! AATGGTTTTCTAACTTACAC+TGG + chr2_3:56651756-56651775 None:intergenic 30.0%
AACTAGATTCTAACTACTGT+TGG + chr2_3:56652141-56652160 None:intergenic 30.0%
GATTATATTGCATAGAGACA+AGG + chr2_3:56652175-56652194 None:intergenic 30.0%
! GTCATTGGTTAATATAGTGT+CGG - chr2_3:56652446-56652465 Msa0300970:five_prime_UTR 30.0%
! TCATTGGTTAATATAGTGTC+GGG - chr2_3:56652447-56652466 Msa0300970:five_prime_UTR 30.0%
!! TTTTGGTTGGTTCTTCTCTT+AGG + chr2_3:56647803-56647822 None:intergenic 35.0%
!!! CACCAACAATGTTTTTTGGT+TGG + chr2_3:56647816-56647835 None:intergenic 35.0%
GAACTAGAAGATGAACATGT+TGG + chr2_3:56647953-56647972 None:intergenic 35.0%
!! TTCATCTTCTAGTTCCACTT+CGG - chr2_3:56647958-56647977 Msa0300970:three_prime_UTR 35.0%
ACTACAACATTCCCTTTCTT+TGG + chr2_3:56648046-56648065 None:intergenic 35.0%
ACAACCCTACAAAAGATTTG+TGG + chr2_3:56648151-56648170 None:intergenic 35.0%
TTTCCATTAACAGGCCAATA+AGG - chr2_3:56648292-56648311 Msa0300970:intron 35.0%
AACCTCATCATTCTCCTTAT+TGG + chr2_3:56648309-56648328 None:intergenic 35.0%
TCATAGTTACCTTATGAGGT+AGG + chr2_3:56648704-56648723 None:intergenic 35.0%
ATGTGAGAAGCTAACTTTGT+AGG + chr2_3:56648817-56648836 None:intergenic 35.0%
! TGAAGATTGTTTTCCTCCTT+TGG - chr2_3:56648906-56648925 Msa0300970:intron 35.0%
TAGTGTCATACTCATACCAA+AGG + chr2_3:56648925-56648944 None:intergenic 35.0%
TATGACACTATGAGTCTGTT+TGG - chr2_3:56648935-56648954 Msa0300970:CDS 35.0%
TACATACTTGTGACACTGTT+TGG - chr2_3:56648987-56649006 Msa0300970:CDS 35.0%
TCGAACTTTCCAACAATTTC+AGG + chr2_3:56649097-56649116 None:intergenic 35.0%
GAAATTGTTGGAAAGTTCGA+AGG - chr2_3:56649097-56649116 Msa0300970:CDS 35.0%
TTCACCTACCTCGATAAATA+TGG + chr2_3:56649228-56649247 None:intergenic 35.0%
TCCATGTTGTAATCTTTGTC+AGG - chr2_3:56649303-56649322 Msa0300970:CDS 35.0%
ACCTGACAAAGATTACAACA+TGG + chr2_3:56649307-56649326 None:intergenic 35.0%
! AGCCAAAAGAATCTTGTTTC+TGG - chr2_3:56649372-56649391 Msa0300970:CDS 35.0%
! GCCAAAAGAATCTTGTTTCT+GGG - chr2_3:56649373-56649392 Msa0300970:CDS 35.0%
!! CCAAAAGAATCTTGTTTCTG+GGG - chr2_3:56649374-56649393 Msa0300970:CDS 35.0%
! TGAACTGAGAGCTTTTGAAT+TGG - chr2_3:56649430-56649449 Msa0300970:CDS 35.0%
TGAAAACGGAGAGTTAAGAT+TGG - chr2_3:56649531-56649550 Msa0300970:CDS 35.0%
GAAAACGGAGAGTTAAGATT+GGG - chr2_3:56649532-56649551 Msa0300970:CDS 35.0%
! TGGTTACCAACAATTGATTC+AGG + chr2_3:56649592-56649611 None:intergenic 35.0%
! TTCATGTTTTCTACAGTCCA+AGG - chr2_3:56649671-56649690 Msa0300970:intron 35.0%
! CATTTTGAATCTTGTCCCTA+TGG + chr2_3:56649865-56649884 None:intergenic 35.0%
! GTGATTTGGATCCCTATAAA+TGG - chr2_3:56650023-56650042 Msa0300970:intron 35.0%
!! TTTGACTTGGGCCATTTATA+GGG + chr2_3:56650037-56650056 None:intergenic 35.0%
!!! TTTTGACTTGGGCCATTTAT+AGG + chr2_3:56650038-56650057 None:intergenic 35.0%
ATAAATGGCCCAAGTCAAAA+TGG - chr2_3:56650038-56650057 Msa0300970:intron 35.0%
!!! AAGCATCTCCATTTTGACTT+GGG + chr2_3:56650049-56650068 None:intergenic 35.0%
AGCTATCTGTGATATTACAC+AGG - chr2_3:56650247-56650266 Msa0300970:intron 35.0%
AAGATTGAATGTTCAAGGGA+GGG + chr2_3:56650349-56650368 None:intergenic 35.0%
CGACAAGATTGAATGTTCAA+GGG + chr2_3:56650353-56650372 None:intergenic 35.0%
TCGACAAGATTGAATGTTCA+AGG + chr2_3:56650354-56650373 None:intergenic 35.0%
TGAACATTCAATCTTGTCGA+AGG - chr2_3:56650354-56650373 Msa0300970:CDS 35.0%
TTGGATTCATACCAGTGATA+AGG + chr2_3:56650424-56650443 None:intergenic 35.0%
! TTCTAGTTATGCAGACTTCA+CGG - chr2_3:56650725-56650744 Msa0300970:intron 35.0%
AATATATCCATTGAGATCCC+TGG - chr2_3:56650785-56650804 Msa0300970:CDS 35.0%
GATCTAAACCTTAACTCTTG+GGG - chr2_3:56650819-56650838 Msa0300970:CDS 35.0%
TAAGTTTGGTTGCATTATGC+AGG + chr2_3:56650875-56650894 None:intergenic 35.0%
! GATATACACAAAGTTGGTCA+AGG - chr2_3:56650948-56650967 Msa0300970:intron 35.0%
! TAGTTGGAAATTGGTTGGTT+TGG + chr2_3:56650991-56651010 None:intergenic 35.0%
TTCTCTAGTTGGAAATTGGT+TGG + chr2_3:56650996-56651015 None:intergenic 35.0%
TGACAAAAATTTCAACGCGA+AGG - chr2_3:56651160-56651179 Msa0300970:intron 35.0%
! ATTTGGATTTTCCTTATCGG+CGG - chr2_3:56651199-56651218 Msa0300970:intron 35.0%
! AGAGTTCTGTAGATTTTGTG+AGG + chr2_3:56651234-56651253 None:intergenic 35.0%
GAATGAAGGTTCACAAACAA+AGG - chr2_3:56651363-56651382 Msa0300970:CDS 35.0%
AGTGAACTAGAGAGACTATT+TGG - chr2_3:56651443-56651462 Msa0300970:intron 35.0%
GATTTAATGGCTGAAACAGA+TGG + chr2_3:56651616-56651635 None:intergenic 35.0%
!! TCCGTTTTTAATTGGTGTAC+CGG + chr2_3:56651688-56651707 None:intergenic 35.0%
!! AAGGTGCATCCGTTTTTAAT+TGG + chr2_3:56651696-56651715 None:intergenic 35.0%
TTCAATAGGACAACTCATTC+AGG + chr2_3:56651880-56651899 None:intergenic 35.0%
AAGTGGAGAAGATGACAATT+GGG - chr2_3:56652022-56652041 Msa0300970:CDS 35.0%
TGATGATAACCAGAGTTGTT+TGG - chr2_3:56652053-56652072 Msa0300970:CDS 35.0%
! ATCTTTTATAGCCACTGGAT+AGG - chr2_3:56652357-56652376 Msa0300970:five_prime_UTR 35.0%
! AATGACAGTTTGTTCTTTGG+CGG + chr2_3:56652432-56652451 None:intergenic 35.0%
! ACCAATGACAGTTTGTTCTT+TGG + chr2_3:56652435-56652454 None:intergenic 35.0%
! TTCGAGCAATGCTATTTAGT+GGG + chr2_3:56652495-56652514 None:intergenic 35.0%
! TTTCGAGCAATGCTATTTAG+TGG + chr2_3:56652496-56652515 None:intergenic 35.0%
AACTCACATACACAATTGTG+AGG - chr2_3:56652514-56652533 Msa0300970:five_prime_UTR 35.0%
TAAACCGCGAGAAAATTGTG+AGG - chr2_3:56647727-56647746 Msa0300970:intron 40.0%
AAACCGCGAGAAAATTGTGA+GGG - chr2_3:56647728-56647747 Msa0300970:intron 40.0%
ACTTGTTCCAAATGACCTTG+TGG + chr2_3:56648076-56648095 None:intergenic 40.0%
TGTGGTTGAAGACCATAAGT+TGG + chr2_3:56648133-56648152 None:intergenic 40.0%
! TCTCCTTATTGGCCTGTTAA+TGG + chr2_3:56648298-56648317 None:intergenic 40.0%
GAATGATGAGGTTTACACAC+AGG - chr2_3:56648316-56648335 Msa0300970:intron 40.0%
TCCTTTGTCGAATTTCTCCT+TGG - chr2_3:56648631-56648650 Msa0300970:CDS 40.0%
CCTTTGTCGAATTTCTCCTT+GGG - chr2_3:56648632-56648651 Msa0300970:CDS 40.0%
ACACTAGTATTTGGATCCCA+AGG + chr2_3:56648651-56648670 None:intergenic 40.0%
TTCTTTGCTCCTACCTCATA+AGG - chr2_3:56648692-56648711 Msa0300970:CDS 40.0%
TTGTGTTGCATTCAGTTAGC+AGG - chr2_3:56648727-56648746 Msa0300970:CDS 40.0%
TGTGTTGCATTCAGTTAGCA+GGG - chr2_3:56648728-56648747 Msa0300970:CDS 40.0%
TGTCATACTCATACCAAAGG+AGG + chr2_3:56648922-56648941 None:intergenic 40.0%
CACTATGAGTCTGTTTGGAT+TGG - chr2_3:56648940-56648959 Msa0300970:CDS 40.0%
ATTGTTGGAAAGTTCGAAGG+TGG - chr2_3:56649100-56649119 Msa0300970:CDS 40.0%
TTTGCAACAAGCTCTTGAGA+GGG + chr2_3:56649175-56649194 None:intergenic 40.0%
! TTTTGCAACAAGCTCTTGAG+AGG + chr2_3:56649176-56649195 None:intergenic 40.0%
TTCGCCATATTTATCGAGGT+AGG - chr2_3:56649221-56649240 Msa0300970:CDS 40.0%
! CCCCAGAAACAAGATTCTTT+TGG + chr2_3:56649377-56649396 None:intergenic 40.0%
ATAGAGATCCATGAGCAGTA+AGG + chr2_3:56649504-56649523 None:intergenic 40.0%
TGCTCATGGATCTCTATGTA+GGG - chr2_3:56649507-56649526 Msa0300970:CDS 40.0%
TCTCTATGTAGGGGTGAAAA+CGG - chr2_3:56649517-56649536 Msa0300970:CDS 40.0%
GGTCTTCCTGAATCAATTGT+TGG - chr2_3:56649583-56649602 Msa0300970:CDS 40.0%
TCCTAGTTTCCTTTCTTCAG+TGG - chr2_3:56649621-56649640 Msa0300970:CDS 40.0%
TAGCATTAGCCACTGAAGAA+AGG + chr2_3:56649633-56649652 None:intergenic 40.0%
! AGTCCAAGGTACTTGATTAG+CGG - chr2_3:56649685-56649704 Msa0300970:intron 40.0%
TATCCGCTAATCAAGTACCT+TGG + chr2_3:56649691-56649710 None:intergenic 40.0%
TTGGTAAGGCACAACGAAAT+CGG + chr2_3:56649811-56649830 None:intergenic 40.0%
TGGATGAATCTCCAGAAAGA+AGG - chr2_3:56649895-56649914 Msa0300970:CDS 40.0%
GTTATAGCTGACCTTCTTTC+TGG + chr2_3:56649909-56649928 None:intergenic 40.0%
AGTGACTGGAATGAGTGATT+TGG - chr2_3:56650009-56650028 Msa0300970:intron 40.0%
!!! CAAGCATCTCCATTTTGACT+TGG + chr2_3:56650050-56650069 None:intergenic 40.0%
GTCAAAATGGAGATGCTTGA+TGG - chr2_3:56650051-56650070 Msa0300970:intron 40.0%
TGATATTACACAGGTCCGAT+GGG - chr2_3:56650256-56650275 Msa0300970:intron 40.0%
ATCAAGATAGAGTCTCTCCT+TGG - chr2_3:56650300-56650319 Msa0300970:CDS 40.0%
TCAAGATAGAGTCTCTCCTT+GGG - chr2_3:56650301-56650320 Msa0300970:CDS 40.0%
CAAGATTGAATGTTCAAGGG+AGG + chr2_3:56650350-56650369 None:intergenic 40.0%
ATACCAGTGATAAGGTGACT+GGG + chr2_3:56650416-56650435 None:intergenic 40.0%
TGAGTCTATAAGATCGACCA+AGG - chr2_3:56650542-56650561 Msa0300970:CDS 40.0%
TTACTTCTTCCGAGTTTACG+AGG - chr2_3:56650694-56650713 Msa0300970:intron 40.0%
TACTTCTTCCGAGTTTACGA+GGG - chr2_3:56650695-56650714 Msa0300970:intron 40.0%
GTGAAGTCTGCATAACTAGA+AGG + chr2_3:56650726-56650745 None:intergenic 40.0%
!! TGGTTTTACCCCAAGAGTTA+AGG + chr2_3:56650830-56650849 None:intergenic 40.0%
AATACTCCTTCAGCTCAGAT+AGG - chr2_3:56651026-56651045 Msa0300970:intron 40.0%
GGTGCATTGAGAAATGAAGT+TGG - chr2_3:56651047-56651066 Msa0300970:intron 40.0%
! GTTCTGTAGATTTTGTGAGG+TGG + chr2_3:56651231-56651250 None:intergenic 40.0%
TGCTAAAAGAAGTTGCACGA+AGG - chr2_3:56651253-56651272 Msa0300970:intron 40.0%
! ATGCGTTGGCAAATTGTCAA+AGG + chr2_3:56651329-56651348 None:intergenic 40.0%
CACAAACAAAGGAGCTTAGT+TGG - chr2_3:56651374-56651393 Msa0300970:CDS 40.0%
GCTCAATCTTGAGAGATCAA+TGG + chr2_3:56651405-56651424 None:intergenic 40.0%
ATTGAGCAGCTACAATGATC+TGG - chr2_3:56651418-56651437 Msa0300970:CDS 40.0%
ACTAGAGAGACTATTTGGCA+TGG - chr2_3:56651448-56651467 Msa0300970:intron 40.0%
! CTTCTAAGAGATCCTGACAA+AGG - chr2_3:56651476-56651495 Msa0300970:intron 40.0%
TAAGAGATCCTGACAAAGGA+TGG - chr2_3:56651480-56651499 Msa0300970:intron 40.0%
! CATTTTCACTGTCAGTGTAG+AGG + chr2_3:56651511-56651530 None:intergenic 40.0%
!! CCGTTTTTAATTGGTGTACC+GGG + chr2_3:56651687-56651706 None:intergenic 40.0%
CCCGGTACACCAATTAAAAA+CGG - chr2_3:56651684-56651703 Msa0300970:intron 40.0%
GAAGTGGAGAAGATGACAAT+TGG - chr2_3:56652021-56652040 Msa0300970:CDS 40.0%
GTGTATGTTCCAAACAACTC+TGG + chr2_3:56652065-56652084 None:intergenic 40.0%
! GGAACATACACCATTGATTG+TGG - chr2_3:56652074-56652093 Msa0300970:CDS 40.0%
! ACATACACCATTGATTGTGG+AGG - chr2_3:56652077-56652096 Msa0300970:CDS 40.0%
! TTTGAAGCCTCCACAATCAA+TGG + chr2_3:56652087-56652106 None:intergenic 40.0%
ACTACTGTTGGAGAAGAATC+TGG + chr2_3:56652129-56652148 None:intergenic 40.0%
TATAGACAAAGTCGCATGCA+TGG - chr2_3:56652277-56652296 Msa0300970:CDS 40.0%
! AGCGAATCTTTTATAGCCAC+TGG - chr2_3:56652352-56652371 Msa0300970:five_prime_UTR 40.0%
GGAGGTAGTTGCTGAAAAAA+TGG + chr2_3:56652402-56652421 None:intergenic 40.0%
TTGTTCTTTGGCGGAATACA+AGG + chr2_3:56652423-56652442 None:intergenic 40.0%
GCCAAAGAACAAACTGTCAT+TGG - chr2_3:56652431-56652450 Msa0300970:five_prime_UTR 40.0%
! GATCCCTCACAATTTTCTCG+CGG + chr2_3:56647734-56647753 None:intergenic 45.0%
TGAAGAAACAAGAGCCGAAG+TGG + chr2_3:56647975-56647994 None:intergenic 45.0%
GAACTATGGCATTCTTGTGC+TGG - chr2_3:56648004-56648023 Msa0300970:three_prime_UTR 45.0%
GGCCAATAAGGAGAATGATG+AGG - chr2_3:56648304-56648323 Msa0300970:intron 45.0%
! ACAGGTTACTTTGCTTCCAC+AGG - chr2_3:56648334-56648353 Msa0300970:intron 45.0%
ATAAAACCTACCTCTGCCTG+TGG + chr2_3:56648353-56648372 None:intergenic 45.0%
! ACAGGCAGAGGTAGGTTTTA+TGG - chr2_3:56648352-56648371 Msa0300970:intron 45.0%
CCCAAGGAGAAATTCGACAA+AGG + chr2_3:56648635-56648654 None:intergenic 45.0%
TCAGTTAGCAGGGATGTGTT+TGG - chr2_3:56648738-56648757 Msa0300970:CDS 45.0%
TTGGATGACAAAGAGCCTGA+AGG - chr2_3:56648757-56648776 Msa0300970:CDS 45.0%
CTTGTTGCAAAAGACCTGCA+TGG - chr2_3:56649184-56649203 Msa0300970:CDS 45.0%
AATCTTTGTCAGGTCAGCCA+AGG - chr2_3:56649313-56649332 Msa0300970:CDS 45.0%
CTGCTCATGGATCTCTATGT+AGG - chr2_3:56649506-56649525 Msa0300970:CDS 45.0%
GCTCATGGATCTCTATGTAG+GGG - chr2_3:56649508-56649527 Msa0300970:CDS 45.0%
GATTCAGGAAGACCGTTTCT+CGG + chr2_3:56649577-56649596 None:intergenic 45.0%
GGAAACTAGGAGAACAACTC+TGG + chr2_3:56649612-56649631 None:intergenic 45.0%
GCCACTGAAGAAAGGAAACT+AGG + chr2_3:56649625-56649644 None:intergenic 45.0%
ATCTTGTCCCTATGGTCAGT+GGG + chr2_3:56649857-56649876 None:intergenic 45.0%
AATCTTGTCCCTATGGTCAG+TGG + chr2_3:56649858-56649877 None:intergenic 45.0%
ATGTCTTGCAGGTGTAGTAG+CGG - chr2_3:56649983-56650002 Msa0300970:intron 45.0%
TGTAGTAGCGGTATAGTGAC+TGG - chr2_3:56649995-56650014 Msa0300970:intron 45.0%
! TAGAAAGGCGTACGCTTCAA+CGG + chr2_3:56650176-56650195 None:intergenic 45.0%
GTGATATTACACAGGTCCGA+TGG - chr2_3:56650255-56650274 Msa0300970:intron 45.0%
CCTCAATATCCTCATCCCAT+CGG + chr2_3:56650274-56650293 None:intergenic 45.0%
CATACCAGTGATAAGGTGAC+TGG + chr2_3:56650417-56650436 None:intergenic 45.0%
TTCTTGACCTTGCAAGACCT+TGG + chr2_3:56650562-56650581 None:intergenic 45.0%
TAGATCAACCTTTCCTGCCA+GGG + chr2_3:56650805-56650824 None:intergenic 45.0%
TTAGATCAACCTTTCCTGCC+AGG + chr2_3:56650806-56650825 None:intergenic 45.0%
AATGCACCTATCTGAGCTGA+AGG + chr2_3:56651035-56651054 None:intergenic 45.0%
! ATTTCTGCTGCTGCTTCTCT+AGG - chr2_3:56651116-56651135 Msa0300970:intron 45.0%
CTTCTCTAGGTGCAAACTTG+AGG - chr2_3:56651129-56651148 Msa0300970:intron 45.0%
GAGAGACTATTTGGCATGGA+AGG - chr2_3:56651452-56651471 Msa0300970:intron 45.0%
AGGATTCTCCATCCTTTGTC+AGG + chr2_3:56651491-56651510 None:intergenic 45.0%
GGCTATGACTTATGTTGTCC+CGG - chr2_3:56651666-56651685 Msa0300970:intron 45.0%
ACAGCAGACAATCGAAGTCA+AGG + chr2_3:56651715-56651734 None:intergenic 45.0%
GTTCATCCAGAATGAGTCGT+CGG - chr2_3:56651792-56651811 Msa0300970:intron 45.0%
GTCGTCGGATCATCATTCAA+TGG - chr2_3:56651807-56651826 Msa0300970:intron 45.0%
AGAACTCACTGCAGGCAAAA+GGG + chr2_3:56651963-56651982 None:intergenic 45.0%
CATAACACAGAACTCACTGC+AGG + chr2_3:56651971-56651990 None:intergenic 45.0%
CTGCAGTGAGTTCTGTGTTA+TGG - chr2_3:56651969-56651988 Msa0300970:intron 45.0%
GCTTCAAAGTCTTCCTCAGT+GGG - chr2_3:56652099-56652118 Msa0300970:CDS 45.0%
TTTATAGCCACTGGATAGGC+AGG - chr2_3:56652361-56652380 Msa0300970:five_prime_UTR 45.0%
AAACAATCCTGCCTATCCAG+TGG + chr2_3:56652371-56652390 None:intergenic 45.0%
TTCTTTGGCGGAATACAAGG+AGG + chr2_3:56652420-56652439 None:intergenic 45.0%
!!! ATTTAGATATTATTTTTTAT+CGG + chr2_3:56647624-56647643 None:intergenic 5.0%
TACTTTGCTTCCACAGGCAG+AGG - chr2_3:56648340-56648359 Msa0300970:intron 50.0%
GAGCCTGAAGGTTTAGAAGC+AGG - chr2_3:56648769-56648788 Msa0300970:CDS 50.0%
CCACCTGCTTCTAAACCTTC+AGG + chr2_3:56648775-56648794 None:intergenic 50.0%
CCTGAAGGTTTAGAAGCAGG+TGG - chr2_3:56648772-56648791 Msa0300970:CDS 50.0%
AGGTTTAGAAGCAGGTGGAG+AGG - chr2_3:56648777-56648796 Msa0300970:CDS 50.0%
GGTTTAGAAGCAGGTGGAGA+GGG - chr2_3:56648778-56648797 Msa0300970:CDS 50.0%
!! TCCATGAGTGCTGGTATCAG+AGG + chr2_3:56648860-56648879 None:intergenic 50.0%
TCTGATACCAGCACTCATGG+AGG - chr2_3:56648859-56648878 Msa0300970:intron 50.0%
CTGATACCAGCACTCATGGA+GGG - chr2_3:56648860-56648879 Msa0300970:intron 50.0%
AGAAAACCCTCCATGAGTGC+TGG + chr2_3:56648869-56648888 None:intergenic 50.0%
TGCAAAAGACCTGCATGGTG+TGG - chr2_3:56649189-56649208 Msa0300970:CDS 50.0%
ATTTCCACTCCACACCATGC+AGG + chr2_3:56649201-56649220 None:intergenic 50.0%
TGAGCAGTAAGGTACACTGC+AGG + chr2_3:56649493-56649512 None:intergenic 50.0%
GCAGTGTACCTTACTGCTCA+TGG - chr2_3:56649493-56649512 Msa0300970:CDS 50.0%
ATCAGGAACCCACTGACCAT+AGG - chr2_3:56649846-56649865 Msa0300970:CDS 50.0%
TCAGGAACCCACTGACCATA+GGG - chr2_3:56649847-56649866 Msa0300970:CDS 50.0%
CCGATGGGATGAGGATATTG+AGG - chr2_3:56650271-56650290 Msa0300970:intron 50.0%
AAGGGAGGGAGAGAAGTAGA+CGG + chr2_3:56650335-56650354 None:intergenic 50.0%
GTCGAAGGCTGAAGAAACTG+CGG - chr2_3:56650369-56650388 Msa0300970:CDS 50.0%
AAGGCTGAAGAAACTGCGGA+CGG - chr2_3:56650373-56650392 Msa0300970:CDS 50.0%
TCACCCAGTCACCTTATCAC+TGG - chr2_3:56650410-56650429 Msa0300970:intron 50.0%
GCGATGAAGATGGGGTGATT+AGG + chr2_3:56650492-56650511 None:intergenic 50.0%
TCTCCAGCTGCGATGAAGAT+GGG + chr2_3:56650501-56650520 None:intergenic 50.0%
! AGCTGGAGACAGTGGGTTTA+TGG - chr2_3:56650512-56650531 Msa0300970:CDS 50.0%
AGATCGACCAAGGTCTTGCA+AGG - chr2_3:56650552-56650571 Msa0300970:CDS 50.0%
AGGCTGAACCCTCGTAAACT+CGG + chr2_3:56650706-56650725 None:intergenic 50.0%
CAGACTTCACGGAAACGAAC+CGG - chr2_3:56650736-56650755 Msa0300970:intron 50.0%
! GGAAACGAACCGGTTTCCTA+GGG - chr2_3:56650746-56650765 Msa0300970:intron 50.0%
CTTGCAAGACCCTAGGAAAC+CGG + chr2_3:56650758-56650777 None:intergenic 50.0%
TCTTGACCTTGCAAGACCCT+AGG + chr2_3:56650765-56650784 None:intergenic 50.0%
TATCCATTGAGATCCCTGGC+AGG - chr2_3:56650789-56650808 Msa0300970:CDS 50.0%
TTTCCTGCCAGGGATCTCAA+TGG + chr2_3:56650795-56650814 None:intergenic 50.0%
ATTGAGATCCCTGGCAGGAA+AGG - chr2_3:56650794-56650813 Msa0300970:CDS 50.0%
CCTGCAGCTTCTGCTTGTTT+CGG + chr2_3:56651091-56651110 None:intergenic 50.0%
! TGGATTTTCCTTATCGGCGG+CGG - chr2_3:56651202-56651221 Msa0300970:intron 50.0%
TGGTTGTTGGGGATGATCCA+TGG - chr2_3:56651537-56651556 Msa0300970:intron 50.0%
GATGATCCGACGACTCATTC+TGG + chr2_3:56651801-56651820 None:intergenic 50.0%
CAGAACTCACTGCAGGCAAA+AGG + chr2_3:56651964-56651983 None:intergenic 50.0%
GGCTTCAAAGTCTTCCTCAG+TGG - chr2_3:56652098-56652117 Msa0300970:CDS 50.0%
GCATGCATGGCTGAAACTCA+CGG - chr2_3:56652290-56652309 Msa0300970:CDS 50.0%
TTGCTTCCACAGGCAGAGGT+AGG - chr2_3:56648344-56648363 Msa0300970:intron 55.0%
GCCTCTGATACCAGCACTCA+TGG - chr2_3:56648856-56648875 Msa0300970:intron 55.0%
CAATCTTCAGCAGCTCGACG+AGG + chr2_3:56648895-56648914 None:intergenic 55.0%
AAGACCTGCATGGTGTGGAG+TGG - chr2_3:56649194-56649213 Msa0300970:CDS 55.0%
CTTTGTCAGGTCAGCCAAGG+AGG - chr2_3:56649316-56649335 Msa0300970:CDS 55.0%
GTAGTGAGCAGATGCCTCCT+TGG + chr2_3:56649333-56649352 None:intergenic 55.0%
!! AGGAGGCATCTGCTCACTAC+TGG - chr2_3:56649333-56649352 Msa0300970:CDS 55.0%
GGGACGCAGTGCTCTTTCTA+AGG - chr2_3:56649394-56649413 Msa0300970:CDS 55.0%
AGAGCTGCTCGACCGAGAAA+CGG - chr2_3:56649562-56649581 Msa0300970:CDS 55.0%
GTACGCTTCAACGGCACAGT+TGG + chr2_3:56650167-56650186 None:intergenic 55.0%
TACACAGGTCCGATGGGATG+AGG - chr2_3:56650262-56650281 Msa0300970:intron 55.0%
GTAGACGGATCGATCTCCCA+AGG + chr2_3:56650320-56650339 None:intergenic 55.0%
AGGCTGAAGAAACTGCGGAC+GGG - chr2_3:56650374-56650393 Msa0300970:intron 55.0%
CTCCAGCTGCGATGAAGATG+GGG + chr2_3:56650500-56650519 None:intergenic 55.0%
GTCTCCAGCTGCGATGAAGA+TGG + chr2_3:56650502-56650521 None:intergenic 55.0%
TTCATCGCAGCTGGAGACAG+TGG - chr2_3:56650504-56650523 Msa0300970:CDS 55.0%
TCATCGCAGCTGGAGACAGT+GGG - chr2_3:56650505-56650524 Msa0300970:CDS 55.0%
! CGGAAACGAACCGGTTTCCT+AGG - chr2_3:56650745-56650764 Msa0300970:intron 55.0%
CGGTTTCCTAGGGTCTTGCA+AGG - chr2_3:56650756-56650775 Msa0300970:intron 55.0%
CCGAAACAAGCAGAAGCTGC+AGG - chr2_3:56651088-56651107 Msa0300970:intron 55.0%
AGAATCTGGCTGTCCCACTG+AGG + chr2_3:56652115-56652134 None:intergenic 55.0%
GAAGCAGGTGGAGAGGGAGA+TGG - chr2_3:56648784-56648803 Msa0300970:CDS 60.0%
GGCATCTGCTCACTACTGGC+TGG - chr2_3:56649337-56649356 Msa0300970:CDS 60.0%
CACCCCATCTTCATCGCAGC+TGG - chr2_3:56650495-56650514 Msa0300970:intron 60.0%
GGTGGTTTCCGCCGCCGATA+AGG + chr2_3:56651213-56651232 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 56647605 56652584 56647605 ID=Msa0300970;Name=Msa0300970
chr2_3 mRNA 56647605 56652584 56647605 ID=Msa0300970-mRNA-1;Parent=Msa0300970;Name=Msa0300970-mRNA-1;_AED=0.16;_eAED=0.16;_QI=234|1|1|1|0.91|0.84|13|214|809
chr2_3 exon 56647605 56647666 56647605 ID=Msa0300970-mRNA-1:exon:18210;Parent=Msa0300970-mRNA-1
chr2_3 exon 56647879 56648214 56647879 ID=Msa0300970-mRNA-1:exon:18209;Parent=Msa0300970-mRNA-1
chr2_3 exon 56648628 56648818 56648628 ID=Msa0300970-mRNA-1:exon:18208;Parent=Msa0300970-mRNA-1
chr2_3 exon 56648915 56649675 56648915 ID=Msa0300970-mRNA-1:exon:18207;Parent=Msa0300970-mRNA-1
chr2_3 exon 56649758 56649920 56649758 ID=Msa0300970-mRNA-1:exon:18206;Parent=Msa0300970-mRNA-1
chr2_3 exon 56650117 56650195 56650117 ID=Msa0300970-mRNA-1:exon:18205;Parent=Msa0300970-mRNA-1
chr2_3 exon 56650273 56650392 56650273 ID=Msa0300970-mRNA-1:exon:18204;Parent=Msa0300970-mRNA-1
chr2_3 exon 56650497 56650661 56650497 ID=Msa0300970-mRNA-1:exon:18203;Parent=Msa0300970-mRNA-1
chr2_3 exon 56650774 56650864 56650774 ID=Msa0300970-mRNA-1:exon:18202;Parent=Msa0300970-mRNA-1
chr2_3 exon 56650951 56651035 56650951 ID=Msa0300970-mRNA-1:exon:18201;Parent=Msa0300970-mRNA-1
chr2_3 exon 56651262 56651447 56651262 ID=Msa0300970-mRNA-1:exon:18200;Parent=Msa0300970-mRNA-1
chr2_3 exon 56651828 56651884 56651828 ID=Msa0300970-mRNA-1:exon:18199;Parent=Msa0300970-mRNA-1
chr2_3 exon 56652003 56652584 56652003 ID=Msa0300970-mRNA-1:exon:18198;Parent=Msa0300970-mRNA-1
chr2_3 five_prime_UTR 56652351 56652584 56652351 ID=Msa0300970-mRNA-1:five_prime_utr;Parent=Msa0300970-mRNA-1
chr2_3 CDS 56652003 56652350 56652003 ID=Msa0300970-mRNA-1:cds;Parent=Msa0300970-mRNA-1
chr2_3 CDS 56651828 56651884 56651828 ID=Msa0300970-mRNA-1:cds;Parent=Msa0300970-mRNA-1
chr2_3 CDS 56651262 56651447 56651262 ID=Msa0300970-mRNA-1:cds;Parent=Msa0300970-mRNA-1
chr2_3 CDS 56650951 56651035 56650951 ID=Msa0300970-mRNA-1:cds;Parent=Msa0300970-mRNA-1
chr2_3 CDS 56650774 56650864 56650774 ID=Msa0300970-mRNA-1:cds;Parent=Msa0300970-mRNA-1
chr2_3 CDS 56650497 56650661 56650497 ID=Msa0300970-mRNA-1:cds;Parent=Msa0300970-mRNA-1
chr2_3 CDS 56650273 56650392 56650273 ID=Msa0300970-mRNA-1:cds;Parent=Msa0300970-mRNA-1
chr2_3 CDS 56650117 56650195 56650117 ID=Msa0300970-mRNA-1:cds;Parent=Msa0300970-mRNA-1
chr2_3 CDS 56649758 56649920 56649758 ID=Msa0300970-mRNA-1:cds;Parent=Msa0300970-mRNA-1
chr2_3 CDS 56648915 56649675 56648915 ID=Msa0300970-mRNA-1:cds;Parent=Msa0300970-mRNA-1
chr2_3 CDS 56648628 56648818 56648628 ID=Msa0300970-mRNA-1:cds;Parent=Msa0300970-mRNA-1
chr2_3 CDS 56648031 56648214 56648031 ID=Msa0300970-mRNA-1:cds;Parent=Msa0300970-mRNA-1
chr2_3 three_prime_UTR 56647879 56648030 56647879 ID=Msa0300970-mRNA-1:three_prime_utr;Parent=Msa0300970-mRNA-1
chr2_3 three_prime_UTR 56647605 56647666 56647605 ID=Msa0300970-mRNA-1:three_prime_utr;Parent=Msa0300970-mRNA-1
Gene Sequence

>Msa0300970

ATGGATATTGATCTGAATGATTCCACAACACAAGTTAAGAAGAATATATGTTGCAATGGTGAATGTGAGAAAAGTGTTTGTTGTGTTTGCACTTTATCTTCTTCTTCATCACCAACATGTTCATCTTCTAGTTCCACTTCGGCTCTTGTTTCTTCATCTTATCTTGAACTATGGCATTCTTGTGCTGGACCTTTAACATCACTTCCAAAGAAAGGGAATGTTGTAGTTTATTTTCCACAAGGTCATTTGGAACAAGTTGCATCTTTGTCTCTCTTTTCTTCATTGGAAATTCCAACTTATGGTCTTCAACCACAAATCTTTTGTAGGGTTGTCAATGTTCAATTACTTGCCAATAAGGAGAATGATGAGGTTTACACACAGGTTACTTTGCTTCCACAGGCAGAGTTAGCAGGGATGTGTTTGGATGACAAAGAGCCTGAAGGTTTAGAAGCAGGTGGAGAGGGAGATGGAAGATCGCCTACAAAGTTAGCTTCTCACATGTTTTGCAAAACACTCACTGCCTCTGATACCAGCACTCATGGAGGGTTTTCTGTTCCTCGTCGAGCTGCTGAAGATTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGACCCTCTCAAGAGCTTGTTGCAAAAGACCTGCATGGTGTGGAGTGGAAATTTCGCCATATTTATCGAGGTCAGCCAAGGAGGCATCTGCTCACTACTGGCTGGAGTGCTTTTGTTAGCCAAAAGAATCTTGTTTCTGGGGACGCAGTGCTCTTTCTAAGGGGTGAAAACGGAGAGTTAAGATTGGGAATCAGAAGAGCTGCTCGACCGAGAAACGGTCTTCCTGAATCAATTGTTGGTAACCAGAGTTGTTCTCCTAGTTTCCTTTCTTCAGTGGCTAATGCTATCTCCGCAAAAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCTAGTCATGCCGATTTCGTTGTGCCTTACCAAAAGTATGCTAAAAGCATCAGGAACCCACTGACCATAGGGACAAGATTCAAAATGAAATTTGAAATGGATGAATCTCCAGAAAGAAGGTGTAGTAGCGGTATAGTGACTGGAATGAGTGATTTGGATCCCTATAAATGGCCCAAGTCAAAATGGAGATGCTTGATGGTCCGATGGGATGAGGATATTGAGGCTAATCATCAAGATAGAGTCTCTCCTTGGGAGATCGATCCGTCTACTTCTCTCCCTCCCTTGAACATTCAATCTTGTCGAAGGCTGAAGAAACTGCGGACGGGTCTGCAAGTTGAATCACCCAGTCACCTTATCACTGCTGGAGACAGTGGGTTTATGGACTTTGATGAGTCTATAAGATCGACCAAGGTCTTGCAAGGTCAAGAAAAAACAAGTTTTATGTCACTATATTATGGATGTGACACAGTAACTAAGCAGAAAGAATTTGATATCAATTCTCTAAGACATACTAATCTTGCATCAAATGGAGCAAGAAAGATTACTTCTTCCGAGTTTACGAGGGTTCAGCCTTCTAGTTATGCAGACTTCACGGAAACGAACCGGTTTCCTAGGGTCTTGCAAGGTCAAGAAATATATCCATTGAGATCCCTGGCAGGAAAGGTTGATCTAAACCTTAACTCTTGGGGTAAAACCAATGTTAGTTACACAAATTATAACCTGCATAATGCAACCAAACTTAACTTTCACTCATTAGGATCAGAAGTTCTTCAAAATTCCTCTTTTCCATATGGTGATATACACAAAGTTGGTCAAGGTAGCAGCATGCTGTGCTCCAAACCAACCAATTTCCAACTAGAGAATGTTTCATTTAATACTCCTTCAGCTCAGATAGGTGCATTGAGAAATGAAGTTGGAATATCAGGTTTCACAATCCGAAACAAGCAGAAGCTGCAGGACAATATTTCTGCTGCTGCTTCTCTAGGTGCAAACTTGAGGATTTCAAATGACAAAAATTTCAACGCGAAGGTAAATCCTTGTAGACTATTTGGATTTTCCTTATCGGCGGCGGAAACCACCTCACAAAATCTACAGAACTCTGCTAAAAGAAGTTGCACGAAGGTTCACAAACAAAGGAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGATTGAGCAGCTACAATGATCTGGTGAGTGAACTAGAGAGACTATTTGGCATGGAAGGTCTTCTAAGAGATCCTGACAAAGGATGGAGAATCCTCTACACTGACAGTGAAAATGACATTATGGTTGTTGGGGATGATCCATGGCATGAGTTCTGTGTTATGGTATCAAAAATCCATATATATACACAAGAAGAAGTGGAGAAGATGACAATTGGGATGATGAATGATGATAACCAGAGTTGTTTGGAACATACACCATTGATTGTGGAGGCTTCAAAGTCTTCCTCAGTGGGACAGCCAGATTCTTCTCCAACAGTAGTTAGAATCTAG
Protein sequence

>Msa0300970

MDIDLNDSTTQVKKNICCNGECEKSVCCVCTLSSSSSPTCSSSSSTSALVSSSYLELWHSCAGPLTSLPKKGNVVVYFPQGHLEQVASLSLFSSLEIPTYGLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELAGMCLDDKEPEGLEAGGEGDGRSPTKLASHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSAFVSQKNLVSGDAVLFLRGENGELRLGIRRAARPRNGLPESIVGNQSCSPSFLSSVANAISAKSMFHVFYSPRASHADFVVPYQKYAKSIRNPLTIGTRFKMKFEMDESPERRCSSGIVTGMSDLDPYKWPKSKWRCLMVRWDEDIEANHQDRVSPWEIDPSTSLPPLNIQSCRRLKKLRTGLQVESPSHLITAGDSGFMDFDESIRSTKVLQGQEKTSFMSLYYGCDTVTKQKEFDINSLRHTNLASNGARKITSSEFTRVQPSSYADFTETNRFPRVLQGQEIYPLRSLAGKVDLNLNSWGKTNVSYTNYNLHNATKLNFHSLGSEVLQNSSFPYGDIHKVGQGSSMLCSKPTNFQLENVSFNTPSAQIGALRNEVGISGFTIRNKQKLQDNISAAASLGANLRISNDKNFNAKVNPCRLFGFSLSAAETTSQNLQNSAKRSCTKVHKQRSLVGRAIDLSRLSSYNDLVSELERLFGMEGLLRDPDKGWRILYTDSENDIMVVGDDPWHEFCVMVSKIHIYTQEEVEKMTIGMMNDDNQSCLEHTPLIVEASKSSSVGQPDSSPTVVRI*