Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0302540 | XP_003597363.1 | 98.551 | 69 | 1 | 0 | 1 | 69 | 1 | 69 | 4.65e-42 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0152400 | Msa0302540 | 0.801498 | 8.752626e-49 | -8.615850e-47 |
| Msa0302540 | Msa0307860 | 0.807050 | 6.108830e-50 | -8.615850e-47 |
| Msa0302540 | Msa0363400 | 0.826410 | 2.754631e-54 | -8.615850e-47 |
| Msa0302540 | Msa0698100 | 0.802915 | 4.472712e-49 | -8.615850e-47 |
| Msa0302540 | Msa1199570 | 0.801421 | 9.075704e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0302540 | MtrunA17_Chr2g0328321 | 98.551 | 69 | 1 | 0 | 1 | 69 | 1 | 69 | 4.27e-46 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0302540 | AT5G59410.1 | 66.667 | 75 | 19 | 1 | 1 | 69 | 1 | 75 | 5.94e-31 | 105 |
| Msa0302540 | AT2G29020.1 | 70.968 | 62 | 18 | 0 | 8 | 69 | 17 | 78 | 9.56e-28 | 97.1 |
Find 27 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCAGTGGTTGGAGGATTT+TGG | 0.190036 | 2_3:+59338746 | Msa0302540:CDS |
| CAAGCAATGGGCCTCGTATT+TGG | 0.214066 | 2_3:+59338706 | Msa0302540:CDS |
| CCTCGTATTTGGATTACTTT+GGG | 0.235564 | 2_3:+59338717 | Msa0302540:CDS |
| TGCTCGATCCCGAAGCTTCT+TGG | 0.267462 | 2_3:+59337455 | Msa0302540:CDS |
| AGCTTCGGGATCGAGCAATT+TGG | 0.310638 | 2_3:-59337449 | None:intergenic |
| GCTCGATCCCGAAGCTTCTT+GGG | 0.378769 | 2_3:+59337456 | Msa0302540:CDS |
| AACCTTGTCCCAAGAAGCTT+CGG | 0.386161 | 2_3:-59337464 | None:intergenic |
| GCCTCGTATTTGGATTACTT+TGG | 0.386345 | 2_3:+59338716 | Msa0302540:CDS |
| AAGGAGAAAGGTGACCATTC+TGG | 0.409042 | 2_3:-59337417 | None:intergenic |
| TGGGGCGCCTTTCCAGTGGT+TGG | 0.443020 | 2_3:+59338736 | Msa0302540:CDS |
| TGGCGAATTTGAAAGGAGAA+AGG | 0.461188 | 2_3:-59337429 | None:intergenic |
| AGCAATTTGGCGAATTTGAA+AGG | 0.482080 | 2_3:-59337436 | None:intergenic |
| CATTGGATTCGACAAGCAAT+GGG | 0.488187 | 2_3:+59338694 | Msa0302540:CDS |
| AACTTGGAGATGTATTGCAT+TGG | 0.493240 | 2_3:+59338677 | Msa0302540:CDS |
| GCATTGGATTCGACAAGCAA+TGG | 0.498506 | 2_3:+59338693 | Msa0302540:CDS |
| ACCTTGTCCCAAGAAGCTTC+GGG | 0.501872 | 2_3:-59337463 | None:intergenic |
| CCATTCTGGTGGTGTTGTTG+AGG | 0.511709 | 2_3:-59337403 | None:intergenic |
| AACCAAAATCCTCCAACCAC+TGG | 0.518282 | 2_3:-59338748 | None:intergenic |
| GGCGCCTTTCCAGTGGTTGG+AGG | 0.519426 | 2_3:+59338739 | Msa0302540:CDS |
| TCCCGAAGCTTCTTGGGACA+AGG | 0.549633 | 2_3:+59337462 | Msa0302540:CDS |
| AACCCCAAATAGGATCAACT+TGG | 0.560316 | 2_3:+59338661 | Msa0302540:intron |
| CTCGTATTTGGATTACTTTG+GGG | 0.563337 | 2_3:+59338718 | Msa0302540:CDS |
| CCTCAACAACACCACCAGAA+TGG | 0.583456 | 2_3:+59337403 | Msa0302540:CDS |
| AAATCCTCCAACCACTGGAA+AGG | 0.583783 | 2_3:-59338743 | None:intergenic |
| ACTTTGGGGCGCCTTTCCAG+TGG | 0.601275 | 2_3:+59338732 | Msa0302540:CDS |
| CCCAAAGTAATCCAAATACG+AGG | 0.634018 | 2_3:-59338717 | None:intergenic |
| GAGAAAGGTGACCATTCTGG+TGG | 0.680555 | 2_3:-59337414 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATATAAACTATGT+GGG | - | chr2_3:59338442-59338461 | None:intergenic | 10.0% |
| !!! | TTTTTTTTATATAAACTATG+TGG | - | chr2_3:59338443-59338462 | None:intergenic | 10.0% |
| !!! | TTTTTTTATATAAACTATGT+GGG | - | chr2_3:59338442-59338461 | None:intergenic | 10.0% |
| !!! | TTTTTTTTATATAAACTATG+TGG | - | chr2_3:59338443-59338462 | None:intergenic | 10.0% |
| !!! | TTATTTTTGAGTAAAAAAAG+TGG | + | chr2_3:59337583-59337602 | Msa0302540:intron | 15.0% |
| !!! | TATTTTTGAGTAAAAAAAGT+GGG | + | chr2_3:59337584-59337603 | Msa0302540:intron | 15.0% |
| !!! | TGGGTTTTATTAATATATTA+TGG | + | chr2_3:59337603-59337622 | Msa0302540:intron | 15.0% |
| !! | TAATTGATTATATTTAGACA+CGG | + | chr2_3:59337748-59337767 | Msa0302540:intron | 15.0% |
| !!! | TTATTTTTGAGTAAAAAAAG+TGG | + | chr2_3:59337583-59337602 | Msa0302540:intron | 15.0% |
| !!! | TATTTTTGAGTAAAAAAAGT+GGG | + | chr2_3:59337584-59337603 | Msa0302540:intron | 15.0% |
| !!! | TGGGTTTTATTAATATATTA+TGG | + | chr2_3:59337603-59337622 | Msa0302540:intron | 15.0% |
| !! | TAATTGATTATATTTAGACA+CGG | + | chr2_3:59337748-59337767 | Msa0302540:intron | 15.0% |
| !! | CTCAAAAATAAACAAAATCT+GGG | - | chr2_3:59337574-59337593 | None:intergenic | 20.0% |
| !! | ACTCAAAAATAAACAAAATC+TGG | - | chr2_3:59337575-59337594 | None:intergenic | 20.0% |
| !! | AAAACTTGAGAGTAAATTAA+TGG | - | chr2_3:59337645-59337664 | None:intergenic | 20.0% |
| !! | ATTACTCATCTAATTAAACA+TGG | - | chr2_3:59337713-59337732 | None:intergenic | 20.0% |
| !! | AATGAATCATGAACAAATTA+AGG | - | chr2_3:59337867-59337886 | None:intergenic | 20.0% |
| !! | TACGGAAAAATATATTTGTT+GGG | - | chr2_3:59338038-59338057 | None:intergenic | 20.0% |
| !! | AAAACTAAATGGTTAATCTA+GGG | - | chr2_3:59338352-59338371 | None:intergenic | 20.0% |
| !! | CTCAAAAATAAACAAAATCT+GGG | - | chr2_3:59337574-59337593 | None:intergenic | 20.0% |
| !! | ACTCAAAAATAAACAAAATC+TGG | - | chr2_3:59337575-59337594 | None:intergenic | 20.0% |
| !! | AAAACTTGAGAGTAAATTAA+TGG | - | chr2_3:59337645-59337664 | None:intergenic | 20.0% |
| !! | ATTACTCATCTAATTAAACA+TGG | - | chr2_3:59337713-59337732 | None:intergenic | 20.0% |
| !! | AATGAATCATGAACAAATTA+AGG | - | chr2_3:59337867-59337886 | None:intergenic | 20.0% |
| !! | TACGGAAAAATATATTTGTT+GGG | - | chr2_3:59338038-59338057 | None:intergenic | 20.0% |
| !! | AAAACTAAATGGTTAATCTA+GGG | - | chr2_3:59338352-59338371 | None:intergenic | 20.0% |
| !!! | GACTTTTTTTTCTTTAGAGT+TGG | + | chr2_3:59337797-59337816 | Msa0302540:intron | 25.0% |
| ! | TCATGATTCATTGATATTGT+TGG | + | chr2_3:59337875-59337894 | Msa0302540:intron | 25.0% |
| ! | GTACGGAAAAATATATTTGT+TGG | - | chr2_3:59338039-59338058 | None:intergenic | 25.0% |
| ! | AAACTACACTATAATCAAAC+GGG | - | chr2_3:59338234-59338253 | None:intergenic | 25.0% |
| ! | GAAACTACACTATAATCAAA+CGG | - | chr2_3:59338235-59338254 | None:intergenic | 25.0% |
| !! | TATAGTGTAGTTTCTTCTTT+TGG | + | chr2_3:59338241-59338260 | Msa0302540:intron | 25.0% |
| !! | ATAGTGTAGTTTCTTCTTTT+GGG | + | chr2_3:59338242-59338261 | Msa0302540:intron | 25.0% |
| ! | GAAAACTAAATGGTTAATCT+AGG | - | chr2_3:59338353-59338372 | None:intergenic | 25.0% |
| ! | ACAAATCAGTGAAAACTAAA+TGG | - | chr2_3:59338363-59338382 | None:intergenic | 25.0% |
| !!! | TTAGTTTTCACTGATTTGTT+TGG | + | chr2_3:59338364-59338383 | Msa0302540:intron | 25.0% |
| !!! | GACTTTTTTTTCTTTAGAGT+TGG | + | chr2_3:59337797-59337816 | Msa0302540:intron | 25.0% |
| ! | TCATGATTCATTGATATTGT+TGG | + | chr2_3:59337875-59337894 | Msa0302540:intron | 25.0% |
| ! | GTACGGAAAAATATATTTGT+TGG | - | chr2_3:59338039-59338058 | None:intergenic | 25.0% |
| ! | AAACTACACTATAATCAAAC+GGG | - | chr2_3:59338234-59338253 | None:intergenic | 25.0% |
| ! | GAAACTACACTATAATCAAA+CGG | - | chr2_3:59338235-59338254 | None:intergenic | 25.0% |
| !! | TATAGTGTAGTTTCTTCTTT+TGG | + | chr2_3:59338241-59338260 | Msa0302540:intron | 25.0% |
| !! | ATAGTGTAGTTTCTTCTTTT+GGG | + | chr2_3:59338242-59338261 | Msa0302540:intron | 25.0% |
| ! | GAAAACTAAATGGTTAATCT+AGG | - | chr2_3:59338353-59338372 | None:intergenic | 25.0% |
| ! | ACAAATCAGTGAAAACTAAA+TGG | - | chr2_3:59338363-59338382 | None:intergenic | 25.0% |
| !!! | TTAGTTTTCACTGATTTGTT+TGG | + | chr2_3:59338364-59338383 | Msa0302540:intron | 25.0% |
| AGATCGAAAAACATGAAAAC+AGG | - | chr2_3:59337509-59337528 | None:intergenic | 30.0% | |
| !!! | AGGTTGTTTTTTCAGGAAAT+AGG | + | chr2_3:59337534-59337553 | Msa0302540:intron | 30.0% |
| TAAATGCAACCAACATAGTT+TGG | - | chr2_3:59338111-59338130 | None:intergenic | 30.0% | |
| GATCATAGATAATGAGATCA+TGG | - | chr2_3:59338150-59338169 | None:intergenic | 30.0% | |
| CAAAACTGAATGCTTAATCA+AGG | - | chr2_3:59338182-59338201 | None:intergenic | 30.0% | |
| !!! | ATTCAGTTTTGCTGATTTGT+TGG | + | chr2_3:59338191-59338210 | Msa0302540:intron | 30.0% |
| !!! | TTCAGTTTTGCTGATTTGTT+GGG | + | chr2_3:59338192-59338211 | Msa0302540:intron | 30.0% |
| AACTACACTATAATCAAACG+GGG | - | chr2_3:59338233-59338252 | None:intergenic | 30.0% | |
| CATGTAGTATGTGATTGATA+TGG | + | chr2_3:59338489-59338508 | Msa0302540:intron | 30.0% | |
| ATTGTGGAAGATACTTTAGA+AGG | + | chr2_3:59338527-59338546 | Msa0302540:intron | 30.0% | |
| AAAGATAAAAACAGAGAAGC+TGG | - | chr2_3:59338632-59338651 | None:intergenic | 30.0% | |
| AGATCGAAAAACATGAAAAC+AGG | - | chr2_3:59337509-59337528 | None:intergenic | 30.0% | |
| !!! | AGGTTGTTTTTTCAGGAAAT+AGG | + | chr2_3:59337534-59337553 | Msa0302540:intron | 30.0% |
| TAAATGCAACCAACATAGTT+TGG | - | chr2_3:59338111-59338130 | None:intergenic | 30.0% | |
| GATCATAGATAATGAGATCA+TGG | - | chr2_3:59338150-59338169 | None:intergenic | 30.0% | |
| CAAAACTGAATGCTTAATCA+AGG | - | chr2_3:59338182-59338201 | None:intergenic | 30.0% | |
| !!! | ATTCAGTTTTGCTGATTTGT+TGG | + | chr2_3:59338191-59338210 | Msa0302540:intron | 30.0% |
| !!! | TTCAGTTTTGCTGATTTGTT+GGG | + | chr2_3:59338192-59338211 | Msa0302540:intron | 30.0% |
| AACTACACTATAATCAAACG+GGG | - | chr2_3:59338233-59338252 | None:intergenic | 30.0% | |
| CATGTAGTATGTGATTGATA+TGG | + | chr2_3:59338489-59338508 | Msa0302540:intron | 30.0% | |
| ATTGTGGAAGATACTTTAGA+AGG | + | chr2_3:59338527-59338546 | Msa0302540:intron | 30.0% | |
| AAAGATAAAAACAGAGAAGC+TGG | - | chr2_3:59338632-59338651 | None:intergenic | 30.0% | |
| AGCAATTTGGCGAATTTGAA+AGG | - | chr2_3:59337439-59337458 | None:intergenic | 35.0% | |
| !! | CATGTTTTTCGATCTGTTTG+AGG | + | chr2_3:59337514-59337533 | Msa0302540:intron | 35.0% |
| !!! | CTGTTTGAGGTTGTTTTTTC+AGG | + | chr2_3:59337527-59337546 | Msa0302540:intron | 35.0% |
| CGGTATAAGTATCAGTGATT+TGG | + | chr2_3:59337768-59337787 | Msa0302540:intron | 35.0% | |
| AGAGAGTGAGATCCATTTAA+GGG | + | chr2_3:59338002-59338021 | Msa0302540:intron | 35.0% | |
| ! | ATATATTTTTCCGTACGCAC+CGG | + | chr2_3:59338043-59338062 | Msa0302540:intron | 35.0% |
| ACTTGGGTCTCTTAAGTATT+CGG | - | chr2_3:59338074-59338093 | None:intergenic | 35.0% | |
| TGCATTTAGCTGATATGAGT+TGG | + | chr2_3:59338123-59338142 | Msa0302540:intron | 35.0% | |
| !!! | TTTTGCTGATTTGTTGGGTT+CGG | + | chr2_3:59338197-59338216 | Msa0302540:intron | 35.0% |
| !! | TTTTGGGCTTTAATGCAACA+TGG | + | chr2_3:59338258-59338277 | Msa0302540:intron | 35.0% |
| !! | ATTTAACAGTGGTTCTGAGT+TGG | + | chr2_3:59338294-59338313 | Msa0302540:intron | 35.0% |
| ACTAAATGGTTAATCTAGGG+TGG | - | chr2_3:59338349-59338368 | None:intergenic | 35.0% | |
| CAGCTAAGCATAACAATTAC+TGG | - | chr2_3:59338469-59338488 | None:intergenic | 35.0% | |
| GATGTAGCTTCTCTAAATTG+TGG | + | chr2_3:59338511-59338530 | Msa0302540:intron | 35.0% | |
| ! | TTTTGCACTTCTCATTCTAG+AGG | + | chr2_3:59338572-59338591 | Msa0302540:intron | 35.0% |
| TAAAAACAGAGAAGCTGGTT+AGG | - | chr2_3:59338627-59338646 | None:intergenic | 35.0% | |
| !! | TCTCCAAGTTGATCCTATTT+GGG | - | chr2_3:59338667-59338686 | None:intergenic | 35.0% |
| !! | ATCTCCAAGTTGATCCTATT+TGG | - | chr2_3:59338668-59338687 | None:intergenic | 35.0% |
| AACTTGGAGATGTATTGCAT+TGG | + | chr2_3:59338677-59338696 | Msa0302540:CDS | 35.0% | |
| CCTCGTATTTGGATTACTTT+GGG | + | chr2_3:59338717-59338736 | Msa0302540:CDS | 35.0% | |
| CTCGTATTTGGATTACTTTG+GGG | + | chr2_3:59338718-59338737 | Msa0302540:CDS | 35.0% | |
| AGCAATTTGGCGAATTTGAA+AGG | - | chr2_3:59337439-59337458 | None:intergenic | 35.0% | |
| !! | CATGTTTTTCGATCTGTTTG+AGG | + | chr2_3:59337514-59337533 | Msa0302540:intron | 35.0% |
| !!! | CTGTTTGAGGTTGTTTTTTC+AGG | + | chr2_3:59337527-59337546 | Msa0302540:intron | 35.0% |
| CGGTATAAGTATCAGTGATT+TGG | + | chr2_3:59337768-59337787 | Msa0302540:intron | 35.0% | |
| AGAGAGTGAGATCCATTTAA+GGG | + | chr2_3:59338002-59338021 | Msa0302540:intron | 35.0% | |
| ! | ATATATTTTTCCGTACGCAC+CGG | + | chr2_3:59338043-59338062 | Msa0302540:intron | 35.0% |
| ACTTGGGTCTCTTAAGTATT+CGG | - | chr2_3:59338074-59338093 | None:intergenic | 35.0% | |
| TGCATTTAGCTGATATGAGT+TGG | + | chr2_3:59338123-59338142 | Msa0302540:intron | 35.0% | |
| !!! | TTTTGCTGATTTGTTGGGTT+CGG | + | chr2_3:59338197-59338216 | Msa0302540:intron | 35.0% |
| !! | TTTTGGGCTTTAATGCAACA+TGG | + | chr2_3:59338258-59338277 | Msa0302540:intron | 35.0% |
| !! | ATTTAACAGTGGTTCTGAGT+TGG | + | chr2_3:59338294-59338313 | Msa0302540:intron | 35.0% |
| ACTAAATGGTTAATCTAGGG+TGG | - | chr2_3:59338349-59338368 | None:intergenic | 35.0% | |
| CAGCTAAGCATAACAATTAC+TGG | - | chr2_3:59338469-59338488 | None:intergenic | 35.0% | |
| GATGTAGCTTCTCTAAATTG+TGG | + | chr2_3:59338511-59338530 | Msa0302540:intron | 35.0% | |
| ! | TTTTGCACTTCTCATTCTAG+AGG | + | chr2_3:59338572-59338591 | Msa0302540:intron | 35.0% |
| TAAAAACAGAGAAGCTGGTT+AGG | - | chr2_3:59338627-59338646 | None:intergenic | 35.0% | |
| !! | TCTCCAAGTTGATCCTATTT+GGG | - | chr2_3:59338667-59338686 | None:intergenic | 35.0% |
| !! | ATCTCCAAGTTGATCCTATT+TGG | - | chr2_3:59338668-59338687 | None:intergenic | 35.0% |
| AACTTGGAGATGTATTGCAT+TGG | + | chr2_3:59338677-59338696 | Msa0302540:CDS | 35.0% | |
| CCTCGTATTTGGATTACTTT+GGG | + | chr2_3:59338717-59338736 | Msa0302540:CDS | 35.0% | |
| CTCGTATTTGGATTACTTTG+GGG | + | chr2_3:59338718-59338737 | Msa0302540:CDS | 35.0% | |
| TGGCGAATTTGAAAGGAGAA+AGG | - | chr2_3:59337432-59337451 | None:intergenic | 40.0% | |
| ATTGTGAGCAGAGGATAACT+TGG | - | chr2_3:59337975-59337994 | None:intergenic | 40.0% | |
| CTCAGATAAATTGTGAGCAG+AGG | - | chr2_3:59337984-59338003 | None:intergenic | 40.0% | |
| GAGAGAGTGAGATCCATTTA+AGG | + | chr2_3:59338001-59338020 | Msa0302540:intron | 40.0% | |
| GAGAGTGAGATCCATTTAAG+GGG | + | chr2_3:59338003-59338022 | Msa0302540:intron | 40.0% | |
| GAATGCTTAATCAAGGACAG+AGG | - | chr2_3:59338175-59338194 | None:intergenic | 40.0% | |
| CTTTAATGCAACATGGTTGC+TGG | + | chr2_3:59338265-59338284 | Msa0302540:intron | 40.0% | |
| GCTGGTGGTTTATTTAACAG+TGG | + | chr2_3:59338283-59338302 | Msa0302540:intron | 40.0% | |
| ACTGCAATCAAACAAGGAGT+AGG | - | chr2_3:59338394-59338413 | None:intergenic | 40.0% | |
| AACTGCACTGCAATCAAACA+AGG | - | chr2_3:59338400-59338419 | None:intergenic | 40.0% | |
| ! | GCAGTGCAGTTTCTTCTTTT+TGG | + | chr2_3:59338409-59338428 | Msa0302540:intron | 40.0% |
| ! | AGTTGATCCTATTTGGGGTT+GGG | - | chr2_3:59338661-59338680 | None:intergenic | 40.0% |
| ! | AAGTTGATCCTATTTGGGGT+TGG | - | chr2_3:59338662-59338681 | None:intergenic | 40.0% |
| AACCCCAAATAGGATCAACT+TGG | + | chr2_3:59338661-59338680 | Msa0302540:intron | 40.0% | |
| !! | CTCCAAGTTGATCCTATTTG+GGG | - | chr2_3:59338666-59338685 | None:intergenic | 40.0% |
| CATTGGATTCGACAAGCAAT+GGG | + | chr2_3:59338694-59338713 | Msa0302540:CDS | 40.0% | |
| GCCTCGTATTTGGATTACTT+TGG | + | chr2_3:59338716-59338735 | Msa0302540:CDS | 40.0% | |
| CCCAAAGTAATCCAAATACG+AGG | - | chr2_3:59338720-59338739 | None:intergenic | 40.0% | |
| TGGCGAATTTGAAAGGAGAA+AGG | - | chr2_3:59337432-59337451 | None:intergenic | 40.0% | |
| ATTGTGAGCAGAGGATAACT+TGG | - | chr2_3:59337975-59337994 | None:intergenic | 40.0% | |
| CTCAGATAAATTGTGAGCAG+AGG | - | chr2_3:59337984-59338003 | None:intergenic | 40.0% | |
| GAGAGAGTGAGATCCATTTA+AGG | + | chr2_3:59338001-59338020 | Msa0302540:intron | 40.0% | |
| GAGAGTGAGATCCATTTAAG+GGG | + | chr2_3:59338003-59338022 | Msa0302540:intron | 40.0% | |
| GAATGCTTAATCAAGGACAG+AGG | - | chr2_3:59338175-59338194 | None:intergenic | 40.0% | |
| CTTTAATGCAACATGGTTGC+TGG | + | chr2_3:59338265-59338284 | Msa0302540:intron | 40.0% | |
| GCTGGTGGTTTATTTAACAG+TGG | + | chr2_3:59338283-59338302 | Msa0302540:intron | 40.0% | |
| ACTGCAATCAAACAAGGAGT+AGG | - | chr2_3:59338394-59338413 | None:intergenic | 40.0% | |
| AACTGCACTGCAATCAAACA+AGG | - | chr2_3:59338400-59338419 | None:intergenic | 40.0% | |
| ! | GCAGTGCAGTTTCTTCTTTT+TGG | + | chr2_3:59338409-59338428 | Msa0302540:intron | 40.0% |
| ! | AGTTGATCCTATTTGGGGTT+GGG | - | chr2_3:59338661-59338680 | None:intergenic | 40.0% |
| ! | AAGTTGATCCTATTTGGGGT+TGG | - | chr2_3:59338662-59338681 | None:intergenic | 40.0% |
| AACCCCAAATAGGATCAACT+TGG | + | chr2_3:59338661-59338680 | Msa0302540:intron | 40.0% | |
| !! | CTCCAAGTTGATCCTATTTG+GGG | - | chr2_3:59338666-59338685 | None:intergenic | 40.0% |
| CATTGGATTCGACAAGCAAT+GGG | + | chr2_3:59338694-59338713 | Msa0302540:CDS | 40.0% | |
| GCCTCGTATTTGGATTACTT+TGG | + | chr2_3:59338716-59338735 | Msa0302540:CDS | 40.0% | |
| CCCAAAGTAATCCAAATACG+AGG | - | chr2_3:59338720-59338739 | None:intergenic | 40.0% | |
| AAGGAGAAAGGTGACCATTC+TGG | - | chr2_3:59337420-59337439 | None:intergenic | 45.0% | |
| AACCTTGTCCCAAGAAGCTT+CGG | - | chr2_3:59337467-59337486 | None:intergenic | 45.0% | |
| GGAGAAGTCAACCCCTTAAA+TGG | - | chr2_3:59338017-59338036 | None:intergenic | 45.0% | |
| TCTTAAGTATTCGGTCTGGC+CGG | - | chr2_3:59338065-59338084 | None:intergenic | 45.0% | |
| GGTCTCTTAAGTATTCGGTC+TGG | - | chr2_3:59338069-59338088 | None:intergenic | 45.0% | |
| GGCACAAGTGCTAGATACTT+GGG | - | chr2_3:59338090-59338109 | None:intergenic | 45.0% | |
| TGGCACAAGTGCTAGATACT+TGG | - | chr2_3:59338091-59338110 | None:intergenic | 45.0% | |
| GCACTTGTGCCAAACTATGT+TGG | + | chr2_3:59338099-59338118 | Msa0302540:intron | 45.0% | |
| TAATGCAACATGGTTGCTGG+TGG | + | chr2_3:59338268-59338287 | Msa0302540:intron | 45.0% | |
| ! | GTTGATCCTATTTGGGGTTG+GGG | - | chr2_3:59338660-59338679 | None:intergenic | 45.0% |
| GCATTGGATTCGACAAGCAA+TGG | + | chr2_3:59338693-59338712 | Msa0302540:CDS | 45.0% | |
| AAATCCTCCAACCACTGGAA+AGG | - | chr2_3:59338746-59338765 | None:intergenic | 45.0% | |
| ! | TTCCAGTGGTTGGAGGATTT+TGG | + | chr2_3:59338746-59338765 | Msa0302540:CDS | 45.0% |
| AACCAAAATCCTCCAACCAC+TGG | - | chr2_3:59338751-59338770 | None:intergenic | 45.0% | |
| AAGGAGAAAGGTGACCATTC+TGG | - | chr2_3:59337420-59337439 | None:intergenic | 45.0% | |
| AACCTTGTCCCAAGAAGCTT+CGG | - | chr2_3:59337467-59337486 | None:intergenic | 45.0% | |
| GGAGAAGTCAACCCCTTAAA+TGG | - | chr2_3:59338017-59338036 | None:intergenic | 45.0% | |
| TCTTAAGTATTCGGTCTGGC+CGG | - | chr2_3:59338065-59338084 | None:intergenic | 45.0% | |
| GGTCTCTTAAGTATTCGGTC+TGG | - | chr2_3:59338069-59338088 | None:intergenic | 45.0% | |
| GGCACAAGTGCTAGATACTT+GGG | - | chr2_3:59338090-59338109 | None:intergenic | 45.0% | |
| TGGCACAAGTGCTAGATACT+TGG | - | chr2_3:59338091-59338110 | None:intergenic | 45.0% | |
| GCACTTGTGCCAAACTATGT+TGG | + | chr2_3:59338099-59338118 | Msa0302540:intron | 45.0% | |
| TAATGCAACATGGTTGCTGG+TGG | + | chr2_3:59338268-59338287 | Msa0302540:intron | 45.0% | |
| ! | GTTGATCCTATTTGGGGTTG+GGG | - | chr2_3:59338660-59338679 | None:intergenic | 45.0% |
| GCATTGGATTCGACAAGCAA+TGG | + | chr2_3:59338693-59338712 | Msa0302540:CDS | 45.0% | |
| AAATCCTCCAACCACTGGAA+AGG | - | chr2_3:59338746-59338765 | None:intergenic | 45.0% | |
| ! | TTCCAGTGGTTGGAGGATTT+TGG | + | chr2_3:59338746-59338765 | Msa0302540:CDS | 45.0% |
| AACCAAAATCCTCCAACCAC+TGG | - | chr2_3:59338751-59338770 | None:intergenic | 45.0% | |
| !! | CCATTCTGGTGGTGTTGTTG+AGG | - | chr2_3:59337406-59337425 | None:intergenic | 50.0% |
| CCTCAACAACACCACCAGAA+TGG | + | chr2_3:59337403-59337422 | Msa0302540:CDS | 50.0% | |
| GAGAAAGGTGACCATTCTGG+TGG | - | chr2_3:59337417-59337436 | None:intergenic | 50.0% | |
| AGCTTCGGGATCGAGCAATT+TGG | - | chr2_3:59337452-59337471 | None:intergenic | 50.0% | |
| ACCTTGTCCCAAGAAGCTTC+GGG | - | chr2_3:59337466-59337485 | None:intergenic | 50.0% | |
| CAAGCAATGGGCCTCGTATT+TGG | + | chr2_3:59338706-59338725 | Msa0302540:CDS | 50.0% | |
| !! | CCATTCTGGTGGTGTTGTTG+AGG | - | chr2_3:59337406-59337425 | None:intergenic | 50.0% |
| CCTCAACAACACCACCAGAA+TGG | + | chr2_3:59337403-59337422 | Msa0302540:CDS | 50.0% | |
| GAGAAAGGTGACCATTCTGG+TGG | - | chr2_3:59337417-59337436 | None:intergenic | 50.0% | |
| AGCTTCGGGATCGAGCAATT+TGG | - | chr2_3:59337452-59337471 | None:intergenic | 50.0% | |
| ACCTTGTCCCAAGAAGCTTC+GGG | - | chr2_3:59337466-59337485 | None:intergenic | 50.0% | |
| CAAGCAATGGGCCTCGTATT+TGG | + | chr2_3:59338706-59338725 | Msa0302540:CDS | 50.0% | |
| TGCTCGATCCCGAAGCTTCT+TGG | + | chr2_3:59337455-59337474 | Msa0302540:CDS | 55.0% | |
| GCTCGATCCCGAAGCTTCTT+GGG | + | chr2_3:59337456-59337475 | Msa0302540:CDS | 55.0% | |
| TCCCGAAGCTTCTTGGGACA+AGG | + | chr2_3:59337462-59337481 | Msa0302540:CDS | 55.0% | |
| TCACCTCCCCAACCCCAAAT+AGG | + | chr2_3:59338651-59338670 | Msa0302540:intron | 55.0% | |
| ! | GATCCTATTTGGGGTTGGGG+AGG | - | chr2_3:59338657-59338676 | None:intergenic | 55.0% |
| TGCTCGATCCCGAAGCTTCT+TGG | + | chr2_3:59337455-59337474 | Msa0302540:CDS | 55.0% | |
| GCTCGATCCCGAAGCTTCTT+GGG | + | chr2_3:59337456-59337475 | Msa0302540:CDS | 55.0% | |
| TCCCGAAGCTTCTTGGGACA+AGG | + | chr2_3:59337462-59337481 | Msa0302540:CDS | 55.0% | |
| TCACCTCCCCAACCCCAAAT+AGG | + | chr2_3:59338651-59338670 | Msa0302540:intron | 55.0% | |
| ! | GATCCTATTTGGGGTTGGGG+AGG | - | chr2_3:59338657-59338676 | None:intergenic | 55.0% |
| !! | ACTTTGGGGCGCCTTTCCAG+TGG | + | chr2_3:59338732-59338751 | Msa0302540:CDS | 60.0% |
| !! | ACTTTGGGGCGCCTTTCCAG+TGG | + | chr2_3:59338732-59338751 | Msa0302540:CDS | 60.0% |
| TTCGGTCTGGCCGGTGCGTA+CGG | - | chr2_3:59338056-59338075 | None:intergenic | 65.0% | |
| ! | TGGGGCGCCTTTCCAGTGGT+TGG | + | chr2_3:59338736-59338755 | Msa0302540:CDS | 65.0% |
| GGCGCCTTTCCAGTGGTTGG+AGG | + | chr2_3:59338739-59338758 | Msa0302540:CDS | 65.0% | |
| TTCGGTCTGGCCGGTGCGTA+CGG | - | chr2_3:59338056-59338075 | None:intergenic | 65.0% | |
| ! | TGGGGCGCCTTTCCAGTGGT+TGG | + | chr2_3:59338736-59338755 | Msa0302540:CDS | 65.0% |
| GGCGCCTTTCCAGTGGTTGG+AGG | + | chr2_3:59338739-59338758 | Msa0302540:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 59337382 | 59338780 | 59337382 | ID=Msa0302540;Name=Msa0302540 |
| chr2_3 | mRNA | 59337382 | 59338780 | 59337382 | ID=Msa0302540-mRNA-1;Parent=Msa0302540;Name=Msa0302540-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|1|1|2|0|69 |
| chr2_3 | exon | 59337382 | 59337483 | 59337382 | ID=Msa0302540-mRNA-1:exon:19198;Parent=Msa0302540-mRNA-1 |
| chr2_3 | exon | 59338673 | 59338780 | 59338673 | ID=Msa0302540-mRNA-1:exon:19199;Parent=Msa0302540-mRNA-1 |
| chr2_3 | CDS | 59337382 | 59337483 | 59337382 | ID=Msa0302540-mRNA-1:cds;Parent=Msa0302540-mRNA-1 |
| chr2_3 | CDS | 59338673 | 59338780 | 59338673 | ID=Msa0302540-mRNA-1:cds;Parent=Msa0302540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
