AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0363400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0363400 MtrunA17_Chr3g0101981 98.230 1130 17 1 1 1130 1 1127 0.0 2316
Msa0363400 MtrunA17_Chr7g0214721 79.455 1100 207 5 40 1128 9 1100 0.0 1814
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0363400 AT1G09620.1 70.647 1097 303 5 36 1128 1 1082 0.0 1651

Find 299 sgRNAs with CRISPR-Local

Find 568 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCATTATGCAGAGTTTATT+TGG 0.118960 3_1:+55772077 Msa0363400:CDS
GTTGATGATCTTAAGGCTTT+TGG 0.141253 3_1:+55767744 Msa0363400:CDS
TTTCAAGTATGTTTGTTTCT+TGG 0.170074 3_1:-55768567 None:intergenic
TTGCTTCAGAAGCAACTTTC+AGG 0.207186 3_1:+55772223 Msa0363400:CDS
GGCAAAAGGTAAGATGATTT+TGG 0.221738 3_1:-55771523 None:intergenic
TTGTACTGGTATGCCTATTA+AGG 0.223988 3_1:+55767422 Msa0363400:CDS
GTGTTGCCTGATGGGAAATA+TGG 0.227710 3_1:+55768098 Msa0363400:CDS
TCCTGAGAAGTTTAAGGTTT+TGG 0.229764 3_1:+55768004 Msa0363400:CDS
GCATGAAAGGATGGAGAATA+AGG 0.235175 3_1:-55766895 None:intergenic
TGCTGTCTCAAACACAAAAT+TGG 0.236931 3_1:-55771741 None:intergenic
CATGGAGAAATTTAACAATA+AGG 0.244023 3_1:-55773581 None:intergenic
ATCGAAAGTTGCTGCGAAAT+CGG 0.255551 3_1:+55767611 Msa0363400:CDS
GCTGTTGCTGGGAAATTTAA+AGG 0.256227 3_1:+55767582 Msa0363400:CDS
ATCATAAAAGCCAGTCTTTA+GGG 0.262278 3_1:-55771942 None:intergenic
CAAACGGCAGTCTCAAATTC+AGG 0.265312 3_1:-55772537 None:intergenic
TGCTCCGGAATCAGAAATTA+TGG 0.270285 3_1:+55772399 Msa0363400:CDS
GATCATAAAAGCCAGTCTTT+AGG 0.279076 3_1:-55771943 None:intergenic
CTTGATTAGGAGCAAGCTTT+TGG 0.289176 3_1:+55768655 Msa0363400:CDS
TGTGAGATGCGATGGGGTTT+TGG 0.302841 3_1:-55766970 None:intergenic
TGCAGCTGATGCTGATTCTT+TGG 0.308725 3_1:+55772645 Msa0363400:CDS
CTTCTTGCCCATGTAGATAC+TGG 0.308779 3_1:+55772735 Msa0363400:exon
AATCTTCGTTAAAGCTGTTC+TGG 0.312431 3_1:-55772366 None:intergenic
ATCATTGAAGTTCCGCCATT+TGG 0.316311 3_1:+55768470 Msa0363400:CDS
TGCTCACGTTCATTTGGTCT+TGG 0.318883 3_1:+55771212 Msa0363400:CDS
TTCAAACCATGTAAGCTCTT+TGG 0.323857 3_1:-55771786 None:intergenic
TGTAAGTAACCGTTCATATA+AGG 0.331579 3_1:-55767306 None:intergenic
TGATGACTACATGGCGTTGC+AGG 0.331946 3_1:+55768370 Msa0363400:CDS
GACGGCAATGTTAATTTCAT+TGG 0.332867 3_1:-55771876 None:intergenic
ATTTAAAGATAAGAAAGTTC+AGG 0.334149 3_1:+55768622 Msa0363400:CDS
CTGGTATCCATTTGATCTTC+GGG 0.342901 3_1:+55771481 Msa0363400:CDS
CTTAACTCACCCAATGTTCA+TGG 0.351691 3_1:-55773599 None:intergenic
TGGGCTTGCTCACGTTCATT+TGG 0.351731 3_1:+55771206 Msa0363400:CDS
TATTTCTGATGCTGAGATTT+CGG 0.351859 3_1:+55767674 Msa0363400:CDS
GACTTGTTTGCTTGAGCTTA+CGG 0.353807 3_1:+55768217 Msa0363400:CDS
CTAACAAAAGCATCAAAATA+AGG 0.356226 3_1:-55767813 None:intergenic
TGGTGAAATTGAGGTTCTTC+GGG 0.356396 3_1:+55772558 Msa0363400:CDS
GAATTTAACTGTTGTTGATA+AGG 0.357125 3_1:+55767524 Msa0363400:CDS
GAGGTACCCTAGAGTGATTT+TGG 0.358590 3_1:-55768187 None:intergenic
TGAAGTCCAAAGCGGCGTTT+AGG 0.360778 3_1:+55768396 Msa0363400:CDS
GCCGCCATAATTTCTGATTC+CGG 0.361751 3_1:-55772403 None:intergenic
CTTCGCCCTAAACGCCGCTT+TGG 0.362091 3_1:-55768402 None:intergenic
GTTGGCTGTTGATGATCTTA+AGG 0.366304 3_1:+55767737 Msa0363400:CDS
TTATCAGCAGAAGCCTTAAT+AGG 0.367730 3_1:-55767435 None:intergenic
TGATGCTACACGCTTCTCTT+TGG 0.368017 3_1:+55771691 Msa0363400:CDS
AGCCTTGTGCGGATCATGAT+AGG 0.369866 3_1:+55767916 Msa0363400:CDS
TTGGTGAAATTGAGGTTCTT+CGG 0.372279 3_1:+55772557 Msa0363400:CDS
ATGGAGAAATTTAACAATAA+GGG 0.375937 3_1:-55773580 None:intergenic
TGTTGGCACTCTTTAGTGTA+AGG 0.377843 3_1:-55772165 None:intergenic
AGTTATGTATGCCTTTCTTA+AGG 0.379478 3_1:+55772476 Msa0363400:CDS
GTAAGGTTGTTAAGGATGTT+AGG 0.381968 3_1:+55767865 Msa0363400:CDS
AAGACGGCAGTAGGACTTCC+AGG 0.383040 3_1:-55772715 None:intergenic
ACTGGTATCCATTTGATCTT+CGG 0.385909 3_1:+55771480 Msa0363400:CDS
CCATTTGATCTTCGGGTGTC+TGG 0.388973 3_1:+55771488 Msa0363400:CDS
ATTTCTGTTGGCACTACAAC+AGG 0.392955 3_1:-55772274 None:intergenic
CCACGAGGCCAGTGACGCTT+GGG 0.393245 3_1:-55771569 None:intergenic
AGCAACTGACTGATGATGTC+TGG 0.396202 3_1:+55771372 Msa0363400:CDS
GTGCGCAGAGACGGTTTGCC+TGG 0.396732 3_1:+55768499 Msa0363400:CDS
ACTTGTTTGCTTGAGCTTAC+GGG 0.397198 3_1:+55768218 Msa0363400:CDS
TGAGGTTCTTCGGGAAAACT+TGG 0.398811 3_1:+55772567 Msa0363400:CDS
CAAAAGCTTGCTCCTAATCA+AGG 0.398982 3_1:-55768654 None:intergenic
ATGAAATATCAGTGGACTTA+GGG 0.399717 3_1:-55771421 None:intergenic
TTTGCTTGAGCTTACGGGTC+AGG 0.400682 3_1:+55768223 Msa0363400:CDS
CGCTTCTCTTTGGCTGATGC+TGG 0.402032 3_1:+55771701 Msa0363400:CDS
GAGAAAATGTCCAAGTCTAC+TGG 0.403043 3_1:+55771626 Msa0363400:CDS
ACAAGTCTTCAAATCTGAAC+CGG 0.404529 3_1:+55767233 Msa0363400:CDS
TGGCACAGTTGATTGTGAAT+TGG 0.405856 3_1:+55773536 Msa0363400:three_prime_UTR
AGGATTCTATTGTTCTGATA+AGG 0.406687 3_1:+55772197 Msa0363400:CDS
AACATCCTTAACAACCTTAC+CGG 0.408189 3_1:-55767862 None:intergenic
AGGAAGCTAAGCCCTTGATT+AGG 0.411731 3_1:+55768642 Msa0363400:CDS
TGTTGCCTGATGGGAAATAT+GGG 0.412669 3_1:+55768099 Msa0363400:CDS
GATCAGTGGTACATTACATA+TGG 0.412701 3_1:+55771077 Msa0363400:CDS
CAGCAAATGCGGCAATTCTC+AGG 0.413251 3_1:+55771759 Msa0363400:CDS
AGAATCCTGTAGATATTTGT+TGG 0.413627 3_1:-55772182 None:intergenic
TAAATTTCTCCATGAACATT+GGG 0.414258 3_1:+55773590 Msa0363400:three_prime_UTR
TAACCGTTCATATAAGGAAA+AGG 0.416196 3_1:-55767300 None:intergenic
TCGAAAGTTGCTGCGAAATC+GGG 0.418696 3_1:+55767612 Msa0363400:CDS
CACATATATAATCTCATTCA+AGG 0.419606 3_1:-55768279 None:intergenic
GCTAGGGAGATTCAACAGTT+TGG 0.421756 3_1:+55767462 Msa0363400:CDS
GAAAATGAAAATGCTGTTGC+TGG 0.422165 3_1:+55767570 Msa0363400:CDS
AATGGCGGAACTTCAATGAT+AGG 0.423472 3_1:-55768467 None:intergenic
ACAATTGTGTTCAATAGTTA+CGG 0.424593 3_1:+55774728 Msa0363400:three_prime_UTR
CTGTTGCTGGGAAATTTAAA+GGG 0.426091 3_1:+55767583 Msa0363400:CDS
GTGGGCAAGTTTGTCTCTGT+TGG 0.426100 3_1:+55774552 Msa0363400:three_prime_UTR
TAGTGGTTTCAATCGTGATT+TGG 0.426126 3_1:+55772006 Msa0363400:CDS
GAAGTCCAAAGCGGCGTTTA+GGG 0.427851 3_1:+55768397 Msa0363400:CDS
TGCTGCGAAATCGGGTGGGC+AGG 0.432201 3_1:+55767620 Msa0363400:CDS
TTTATCAATGGGAGATTATG+AGG 0.434040 3_1:+55767643 Msa0363400:CDS
GCGGCGTTTAGGGCGAAGTT+TGG 0.434256 3_1:+55768407 Msa0363400:CDS
GCACAAGGCTGCCCATCTAA+TGG 0.435925 3_1:-55767903 None:intergenic
AGGAAGAAGCGATGGACCTC+GGG 0.439136 3_1:+55772506 Msa0363400:CDS
CTAGACATCACCCTCTTCTC+TGG 0.439476 3_1:-55771023 None:intergenic
TCCAAAACCTTAAACTTCTC+AGG 0.443670 3_1:-55768005 None:intergenic
TTTATGATCTTCAGGCTGCT+AGG 0.449226 3_1:+55771957 Msa0363400:CDS
GGCACAGTTGATTGTGAATT+GGG 0.450729 3_1:+55773537 Msa0363400:three_prime_UTR
ACCTTAAACTTCTCAGGAAA+AGG 0.451795 3_1:-55767999 None:intergenic
CTCTAATTCCTCGATTTCCT+CGG 0.453600 3_1:-55767502 None:intergenic
ATGATAGGCAAAACCTCAAA+TGG 0.453951 3_1:-55768452 None:intergenic
CCAGACACCCGAAGATCAAA+TGG 0.454786 3_1:-55771488 None:intergenic
CAAGTGAACTTGATTTCTGT+TGG 0.456726 3_1:-55772286 None:intergenic
CTGAATTTGAGACTGCCGTT+TGG 0.461105 3_1:+55772538 Msa0363400:CDS
TCCTTCTTATACCTTAAGAA+AGG 0.461245 3_1:-55772487 None:intergenic
GCTGATTCTTTGGCTAAAGC+TGG 0.462486 3_1:+55772655 Msa0363400:CDS
TCTGCATAATGCGGACAGAT+AGG 0.462745 3_1:-55772067 None:intergenic
GATGAAATATCAGTGGACTT+AGG 0.462778 3_1:-55771422 None:intergenic
AGCTGTTCTGGAGAATGTTA+AGG 0.464607 3_1:-55772354 None:intergenic
CCCACGAGGCCAGTGACGCT+TGG 0.464765 3_1:-55771570 None:intergenic
TTATGATCTTCAGGCTGCTA+GGG 0.465497 3_1:+55771958 Msa0363400:CDS
GTCGCGTCTCATCATGATAC+AGG 0.465889 3_1:-55771148 None:intergenic
TATTGAACACAATTGTTGAC+TGG 0.466009 3_1:-55774721 None:intergenic
TTGCTTACCAAAATCACTCT+AGG 0.466850 3_1:+55768180 Msa0363400:CDS
GTTTGACCATACATAGTCTC+AGG 0.467034 3_1:-55768065 None:intergenic
TTCACAATCAACTGTGCCAT+TGG 0.467281 3_1:-55773532 None:intergenic
AGTGTAATAAGCCATGTAAA+TGG 0.467429 3_1:-55771288 None:intergenic
TCTTTGGCTGATGCTGGTGA+TGG 0.467750 3_1:+55771707 Msa0363400:CDS
TCTGCGCACTTGTTTCCAAA+TGG 0.468906 3_1:-55768485 None:intergenic
TCTTGAGGCGGTTTGTTACC+CGG 0.469464 3_1:-55767252 None:intergenic
TCTCAGAATTGAGCATTAAG+TGG 0.473084 3_1:-55771607 None:intergenic
AACTATTCGTCAGGCAATTG+AGG 0.474194 3_1:+55771658 Msa0363400:CDS
TTGCAGAACAATGACATGTA+TGG 0.474570 3_1:+55771323 Msa0363400:CDS
TTAAATTTCTCCATGAACAT+TGG 0.475380 3_1:+55773589 Msa0363400:three_prime_UTR
AGAAATCAAGTTCACTTGCT+TGG 0.476785 3_1:+55772291 Msa0363400:CDS
AAATAAGACAACCACTTGTA+AGG 0.477186 3_1:-55767708 None:intergenic
GCAGAATCTTCTATGAGAAC+TGG 0.481448 3_1:+55771821 Msa0363400:CDS
GTTGTAGAGGCATGAAAGGA+TGG 0.483157 3_1:-55766904 None:intergenic
GGCTCACCAAAGAGCTTACA+TGG 0.484951 3_1:+55771780 Msa0363400:CDS
TATAACAAGTAGCGGCGAAA+TGG 0.485228 3_1:+55767128 Msa0363400:CDS
AACCGTTCATATAAGGAAAA+GGG 0.486042 3_1:-55767299 None:intergenic
CTTCTGCTGATAAGCTTGCT+AGG 0.488309 3_1:+55767445 Msa0363400:CDS
CTTTGGGCTGGTTGAATCAG+TGG 0.488405 3_1:+55771186 Msa0363400:CDS
AGAGTATACGATTATTAAGA+TGG 0.489000 3_1:+55767965 Msa0363400:CDS
GGCGTCCGGTAAGGTTGTTA+AGG 0.490624 3_1:+55767857 Msa0363400:CDS
TGCAACGCCATGTAGTCATC+AGG 0.490911 3_1:-55768368 None:intergenic
GAAATTTAACAATAAGGGAT+AGG 0.490988 3_1:-55773575 None:intergenic
GCCTTTCTTAAGGTATAAGA+AGG 0.492310 3_1:+55772486 Msa0363400:CDS
AAAGCCCCATATTTCCCATC+AGG 0.492467 3_1:-55768104 None:intergenic
CCAAGCGTCACTGGCCTCGT+GGG 0.492516 3_1:+55771570 Msa0363400:CDS
ATCGGATTCGACCATTTACA+TGG 0.492952 3_1:+55771277 Msa0363400:CDS
ATCAGTGGTACATTACATAT+GGG 0.493880 3_1:+55771078 Msa0363400:CDS
TCTGAAATTTCCAGTAGACT+TGG 0.494172 3_1:-55771636 None:intergenic
TACATGGTTTGAAGAGACTC+TGG 0.495450 3_1:+55771796 Msa0363400:CDS
GGTGTTTGTTGTAGCGCATA+GGG 0.496195 3_1:+55768145 Msa0363400:CDS
TTTGGGCTGGTTGAATCAGT+GGG 0.496656 3_1:+55771187 Msa0363400:CDS
CCCAAGCGTCACTGGCCTCG+TGG 0.498016 3_1:+55771569 Msa0363400:CDS
CCAGTACAATGAAAAGCAAA+AGG 0.498326 3_1:-55767408 None:intergenic
TTACGGGTCAGGATTTGATC+GGG 0.498956 3_1:+55768234 Msa0363400:CDS
TACCTTTGTGTGAGATGCGA+TGG 0.501569 3_1:-55766978 None:intergenic
TCAACAGTTTGGTAATCCTC+CGG 0.501868 3_1:+55767473 Msa0363400:CDS
TCTAATTCCTCGATTTCCTC+GGG 0.502510 3_1:-55767501 None:intergenic
CAACTTTCAGGCTCAAAGAA+AGG 0.503259 3_1:+55772235 Msa0363400:CDS
GTGCCATTGGAGACATGTTA+TGG 0.508889 3_1:-55773519 None:intergenic
ATGAGGAAGTTGAAGGCGTC+CGG 0.510654 3_1:+55767843 Msa0363400:CDS
TGGGAGATTATGAGGAGTGT+TGG 0.511727 3_1:+55767651 Msa0363400:CDS
GAGTGCCAACAAATATCTAC+AGG 0.511965 3_1:+55772177 Msa0363400:CDS
AGTTTGGTGTCAAGGATGAA+TGG 0.514319 3_1:+55768423 Msa0363400:CDS
ACCTTTGTGTGAGATGCGAT+GGG 0.515246 3_1:-55766977 None:intergenic
AAGAGGGTGATGTCTAGATC+TGG 0.516950 3_1:+55771029 Msa0363400:CDS
TGAATGGGTGTTGCCATTTG+AGG 0.518524 3_1:+55768439 Msa0363400:CDS
GCGGCGTTTCATCGTCTTCG+CGG 0.518815 3_1:+55767369 Msa0363400:CDS
TTACATATGGGGAGTCAGAA+TGG 0.519024 3_1:+55771090 Msa0363400:CDS
ATGAACGGTTACTTACATCT+AGG 0.519049 3_1:+55767312 Msa0363400:CDS
GGGTGGGCAGGTTTATCAAT+GGG 0.519661 3_1:+55767632 Msa0363400:CDS
ATAATCTCATTCAAGGAAAG+AGG 0.519727 3_1:-55768272 None:intergenic
AGGTGTTTGTTGTAGCGCAT+AGG 0.520012 3_1:+55768144 Msa0363400:CDS
GCACTCTTTAGTGTAAGGTC+AGG 0.521329 3_1:-55772160 None:intergenic
TTGAGGCCTGAGACTATGTA+TGG 0.522370 3_1:+55768059 Msa0363400:CDS
TAGGGCGAAGTTTGGTGTCA+AGG 0.522625 3_1:+55768415 Msa0363400:CDS
ACTACACAGGTACACAGTGC+GGG 0.526307 3_1:+55773468 Msa0363400:intron
TTCTTGCTGCGGCGACGTTG+AGG 0.526676 3_1:+55768042 Msa0363400:CDS
TGAATGAACAATTTGACGGT+TGG 0.526815 3_1:+55772320 Msa0363400:CDS
AAATTTCAGAACTATTCGTC+AGG 0.526947 3_1:+55771649 Msa0363400:CDS
CATGATAGGGCTAGTGGTGA+AGG 0.527937 3_1:+55767930 Msa0363400:CDS
AGATTGTCATGTGGGGCTAG+TGG 0.528796 3_1:+55771989 Msa0363400:CDS
TACGATTATTAAGATGGAGG+TGG 0.529151 3_1:+55767971 Msa0363400:CDS
AGTGTGGTTGTAAAGGCAAA+AGG 0.530282 3_1:-55771537 None:intergenic
ATGCTTGGGTGTTGCCTGAT+GGG 0.531636 3_1:+55768090 Msa0363400:CDS
GTTCCTAGTCGAGTCTCTAT+CGG 0.532586 3_1:+55771259 Msa0363400:CDS
TTCAAAAGAGGTTGTAGATG+TGG 0.535476 3_1:+55772612 Msa0363400:CDS
GCAGTAGGACTTCCAGGGGA+TGG 0.535987 3_1:-55772709 None:intergenic
AAATTGCAGTGTGGTTGTAA+AGG 0.536059 3_1:-55771544 None:intergenic
CATGAAAGGATGGAGAATAA+GGG 0.538850 3_1:-55766894 None:intergenic
TTTCGAGAAGCCCTAAAGAC+TGG 0.539290 3_1:+55771932 Msa0363400:CDS
TGTATGGTCAAACAAATGCT+TGG 0.542374 3_1:+55768075 Msa0363400:CDS
ACTGACGGAACTATGATTGT+CGG 0.542431 3_1:+55768596 Msa0363400:CDS
GAAGTTGAAGGCGTCCGGTA+AGG 0.543141 3_1:+55767848 Msa0363400:CDS
AAGGAAGAAGCGATGGACCT+CGG 0.544155 3_1:+55772505 Msa0363400:CDS
GAGTGTTGTAGAGGCATGAA+AGG 0.544797 3_1:-55766908 None:intergenic
GATAAAGATTGGAACTGCAG+TGG 0.546313 3_1:+55774533 Msa0363400:three_prime_UTR
GGTTTGGTTGTGATTGGAGA+AGG 0.546351 3_1:+55767766 Msa0363400:CDS
ATGAGTATAGATTGTCATGT+GGG 0.547862 3_1:+55771981 Msa0363400:CDS
GCTTTACAACAGAGTTCTGT+AGG 0.548653 3_1:+55772424 Msa0363400:CDS
GATACAGGCTCATGTTCGAC+AGG 0.549001 3_1:-55771133 None:intergenic
GACTCGATCAAGAGACAGAT+AGG 0.549673 3_1:+55772589 Msa0363400:CDS
TGAAGCTTGAGTTTGAGTAC+TGG 0.550901 3_1:+55771462 Msa0363400:CDS
AAGGAAAGAGGAGATTTCAC+AGG 0.552909 3_1:-55768260 None:intergenic
CGGGTGGGCAGGTTTATCAA+TGG 0.553890 3_1:+55767631 Msa0363400:CDS
GCAACTGACTGATGATGTCT+GGG 0.554089 3_1:+55771373 Msa0363400:CDS
ATCAAAATAAGGATTCATAT+CGG 0.554658 3_1:-55767802 None:intergenic
CTTACGGGTCAGGATTTGAT+CGG 0.555572 3_1:+55768233 Msa0363400:CDS
AGAACCTCAATTTCACCAAA+CGG 0.556251 3_1:-55772553 None:intergenic
TCAAAGAAAGGAAATAAGAA+AGG 0.556298 3_1:+55772247 Msa0363400:CDS
TGACTCTCCTGATGACTACA+TGG 0.556661 3_1:+55768361 Msa0363400:CDS
GTGGCATATGAGGAAGTTGA+AGG 0.557101 3_1:+55767836 Msa0363400:CDS
AAACGGCAGTCTCAAATTCA+GGG 0.557696 3_1:-55772536 None:intergenic
GTATGGTCAAACAAATGCTT+GGG 0.558021 3_1:+55768076 Msa0363400:CDS
AGAGACAATCCTCCATCCCC+TGG 0.558983 3_1:+55772697 Msa0363400:CDS
AAACTTACCCAGTATCTACA+TGG 0.559581 3_1:-55772743 None:intergenic
GTTGATAAGGATAAGAATGC+TGG 0.560148 3_1:+55767537 Msa0363400:CDS
ACTGCCGTTTGGTGAAATTG+AGG 0.563819 3_1:+55772549 Msa0363400:CDS
TGGAAACAAGTGCGCAGAGA+CGG 0.563991 3_1:+55768490 Msa0363400:CDS
TTCTGCTGATAAGCTTGCTA+GGG 0.564679 3_1:+55767446 Msa0363400:CDS
AAAGTTGCTGCGAAATCGGG+TGG 0.565171 3_1:+55767615 Msa0363400:CDS
ATAAAGATTGGAACTGCAGT+GGG 0.565868 3_1:+55774534 Msa0363400:three_prime_UTR
GTTTGGTGTCAAGGATGAAT+GGG 0.567640 3_1:+55768424 Msa0363400:CDS
TATGTGAATGAACAATTTGA+CGG 0.567755 3_1:+55772316 Msa0363400:CDS
CTGAATCAAATTCGCGGCGG+CGG 0.568979 3_1:+55767105 Msa0363400:CDS
TGCTTACCAAAATCACTCTA+GGG 0.570670 3_1:+55768181 Msa0363400:CDS
GCCTTGTGCGGATCATGATA+GGG 0.570817 3_1:+55767917 Msa0363400:CDS
GAGACAGATAGGTTCAAAAG+AGG 0.573315 3_1:+55772600 Msa0363400:CDS
GTATAAGAAGGAAGAAGCGA+TGG 0.573325 3_1:+55772498 Msa0363400:CDS
TTAATAATCGTATACTCTTG+CGG 0.573987 3_1:-55767960 None:intergenic
GTCTTGGCACACGTATACCA+TGG 0.575312 3_1:+55771228 Msa0363400:CDS
AAGAAACAAACATACTTGAA+AGG 0.579500 3_1:+55768569 Msa0363400:CDS
GTACAGTGAGCCAGAGAAGA+GGG 0.580499 3_1:+55771013 Msa0363400:CDS
CCTCGTGGGTTTAGATGCAA+TGG 0.582231 3_1:+55771584 Msa0363400:CDS
AAAAGCTTGCTCCTAATCAA+GGG 0.583127 3_1:-55768653 None:intergenic
ATGGGCAAGAAGACGGCAGT+AGG 0.584751 3_1:-55772724 None:intergenic
CAAGTCTTCAAATCTGAACC+GGG 0.588243 3_1:+55767234 Msa0363400:CDS
TTCTTGCCCATGTAGATACT+GGG 0.588266 3_1:+55772736 Msa0363400:exon
AATGCTTGGGTGTTGCCTGA+TGG 0.597981 3_1:+55768089 Msa0363400:CDS
GCGCACTTGTTTCCAAATGG+CGG 0.598780 3_1:-55768482 None:intergenic
GTAGGACTTCCAGGGGATGG+AGG 0.599100 3_1:-55772706 None:intergenic
TACACAGGTACACAGTGCGG+GGG 0.600335 3_1:+55773470 Msa0363400:three_prime_UTR
ACATCATCAGTCAGTTGCTG+AGG 0.601580 3_1:-55771368 None:intergenic
TATCATGATGAGACGCGACA+TGG 0.601773 3_1:+55771152 Msa0363400:CDS
CAAATAAACTCTGCATAATG+CGG 0.603242 3_1:-55772076 None:intergenic
AAGTAGCGGCGAAATGGCGT+CGG 0.604555 3_1:+55767134 Msa0363400:CDS
TATCTACATGGGCAAGAAGA+CGG 0.604927 3_1:-55772731 None:intergenic
GCCCTATCATGATCCGCACA+AGG 0.605847 3_1:-55767918 None:intergenic
AAAATGAAAATGCTGTTGCT+GGG 0.609603 3_1:+55767571 Msa0363400:CDS
ATATCAGTGGACTTAGGGAA+AGG 0.609848 3_1:-55771416 None:intergenic
ATTAGATGGGCAGCCTTGTG+CGG 0.610646 3_1:+55767905 Msa0363400:CDS
TGTGTTTGAGACAGCAAATG+CGG 0.611103 3_1:+55771748 Msa0363400:CDS
AGGTCAGGAGCATCCGCTGT+TGG 0.612362 3_1:-55772145 None:intergenic
TCCATCAAAATAGACAACAT+AGG 0.613893 3_1:-55768305 None:intergenic
AACGGATGATGAAATATCAG+TGG 0.613984 3_1:-55771429 None:intergenic
GTTTGTTGTAGCGCATAGGG+CGG 0.614359 3_1:+55768148 Msa0363400:CDS
TCTTGGCACACGTATACCAT+GGG 0.614967 3_1:+55771229 Msa0363400:CDS
GTTTCAATCGTGATTTGGTG+CGG 0.619319 3_1:+55772011 Msa0363400:CDS
TGTACAGTGAGCCAGAGAAG+AGG 0.620900 3_1:+55771012 Msa0363400:CDS
TCAACACTGAATCAAATTCG+CGG 0.621842 3_1:+55767099 Msa0363400:CDS
GGTAACAAACCGCCTCAAGA+AGG 0.622212 3_1:+55767255 Msa0363400:CDS
ACTAGGAACTGTTCATCCCA+TGG 0.622213 3_1:-55771245 None:intergenic
GAAGGCAGGTTGGCCAACAG+CGG 0.624208 3_1:+55772132 Msa0363400:CDS
AGACGGCAGTAGGACTTCCA+GGG 0.624579 3_1:-55772714 None:intergenic
CTACACAGGTACACAGTGCG+GGG 0.625236 3_1:+55773469 Msa0363400:intron
AGGAGAGTCACTAGGCACAC+TGG 0.625764 3_1:-55768348 None:intergenic
AACTTCAGCATGTTCTCACA+AGG 0.630542 3_1:-55774582 None:intergenic
TAGTCATCAGGAGAGTCACT+AGG 0.633101 3_1:-55768356 None:intergenic
AGCAAACAAGTCGGTCTCTG+AGG 0.634515 3_1:-55768206 None:intergenic
TACTTGAAAGGATTCACTGA+CGG 0.634539 3_1:+55768581 Msa0363400:CDS
TAACCATAACATGTCTCCAA+TGG 0.634682 3_1:+55773516 Msa0363400:three_prime_UTR
TTAAGATCATCAACAGCCAA+CGG 0.643831 3_1:-55767735 None:intergenic
AGGCACACTGGTCACCACTC+CGG 0.645744 3_1:-55768336 None:intergenic
GTATACGATTATTAAGATGG+AGG 0.648854 3_1:+55767968 Msa0363400:CDS
AGTTTCAAGATCCTTACAAG+TGG 0.651300 3_1:+55767697 Msa0363400:CDS
GGCGGCGGTATAACAAGTAG+CGG 0.653648 3_1:+55767120 Msa0363400:CDS
CACGAGGCCAGTGACGCTTG+GGG 0.655463 3_1:-55771568 None:intergenic
GTTGCCTGATGGGAAATATG+GGG 0.656515 3_1:+55768100 Msa0363400:CDS
GATAAGGATAAGAATGCTGG+TGG 0.656941 3_1:+55767540 Msa0363400:CDS
AACTTACCCAGTATCTACAT+GGG 0.658872 3_1:-55772742 None:intergenic
GGAAGAAGCGATGGACCTCG+GGG 0.659621 3_1:+55772507 Msa0363400:CDS
ACACAGGTACACAGTGCGGG+GGG 0.662550 3_1:+55773471 Msa0363400:three_prime_UTR
AGTACTGTAGAGTGTTGTAG+AGG 0.663098 3_1:-55766917 None:intergenic
GATGAGTATAGATTGTCATG+TGG 0.664637 3_1:+55771980 Msa0363400:CDS
TCAGTGGTACATTACATATG+GGG 0.664658 3_1:+55771079 Msa0363400:CDS
CCCCATCGCATCTCACACAA+AGG 0.664915 3_1:+55766976 Msa0363400:CDS
AAGTTGCTGCGAAATCGGGT+GGG 0.665724 3_1:+55767616 Msa0363400:CDS
ACACGATCAGCATAGATAGA+CGG 0.667879 3_1:-55771848 None:intergenic
CACTACACAGGTACACAGTG+CGG 0.669076 3_1:+55773467 Msa0363400:intron
TTCGAAGCTTGAATTCGCCG+CGG 0.681392 3_1:+55767350 Msa0363400:CDS
GCGGATCATGATAGGGCTAG+TGG 0.684305 3_1:+55767924 Msa0363400:CDS
TCCGGAATCAGAAATTATGG+CGG 0.689567 3_1:+55772402 Msa0363400:CDS
TGAGTATAGATTGTCATGTG+GGG 0.690050 3_1:+55771982 Msa0363400:CDS
CCTTTGTGTGAGATGCGATG+GGG 0.691832 3_1:-55766976 None:intergenic
CGATCAGCATAGATAGACGG+TGG 0.694172 3_1:-55771845 None:intergenic
GACGGCAGTAGGACTTCCAG+GGG 0.699615 3_1:-55772713 None:intergenic
AATCCGATAGAGACTCGACT+AGG 0.700123 3_1:-55771262 None:intergenic
AATTCAGGGCTTGAGCCCCG+AGG 0.700721 3_1:-55772522 None:intergenic
AGATCATCAACAGCCAACGG+AGG 0.703614 3_1:-55767732 None:intergenic
ACGAGAAATAGACACTACAC+AGG 0.705033 3_1:+55773455 Msa0363400:intron
TTGTAGCTCTGACAGATCAG+TGG 0.710938 3_1:+55771063 Msa0363400:CDS
GATGGATAAAGGTACCGGAG+TGG 0.717470 3_1:+55768322 Msa0363400:CDS
GCGAAGACGATGAAACGCCG+CGG 0.717705 3_1:-55767367 None:intergenic
ACATAAACAAGAGAAGATAG+CGG 0.718908 3_1:-55766941 None:intergenic
GTAAGCTCAAGCAAACAAGT+CGG 0.723183 3_1:-55768215 None:intergenic
GCAGGATCTGAAGTCCAAAG+CGG 0.754939 3_1:+55768388 Msa0363400:CDS
CCATTGCATCTAAACCCACG+AGG 0.758499 3_1:-55771584 None:intergenic
GCTTGGGGAAAATTGCAGTG+TGG 0.777480 3_1:-55771553 None:intergenic
ACACTGAATCAAATTCGCGG+CGG 0.789343 3_1:+55767102 Msa0363400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTATATTGATAATTTTAAA+AGG - chr3_1:55768735-55768754 None:intergenic 10.0%
!! ATAAAATAATGAAGTTATTA+TGG - chr3_1:55770328-55770347 None:intergenic 10.0%
!!! TAATAACTTCATTATTTTAT+AGG + chr3_1:55770328-55770347 Msa0363400:intron 10.0%
!!! AATAACTTCATTATTTTATA+GGG + chr3_1:55770329-55770348 Msa0363400:intron 10.0%
!!! ACTATGATAATAATTTTTTT+TGG - chr3_1:55773370-55773389 None:intergenic 10.0%
!! TTAAATAATGAATAATTCAT+AGG - chr3_1:55773731-55773750 None:intergenic 10.0%
!! AATGAAAAAATTATTGAAAT+CGG - chr3_1:55773756-55773775 None:intergenic 10.0%
!!! TTTTTTTTTTTTTACCAACT+TGG + chr3_1:55768767-55768786 Msa0363400:intron 15.0%
!!! TTTTTTTTTTTTACCAACTT+GGG + chr3_1:55768768-55768787 Msa0363400:intron 15.0%
!!! ATTTGTTATAGAAATTTTCT+GGG - chr3_1:55769619-55769638 None:intergenic 15.0%
!!! AATTTGTTATAGAAATTTTC+TGG - chr3_1:55769620-55769639 None:intergenic 15.0%
!!! TTTAAAACACAATAAAAACA+TGG - chr3_1:55772945-55772964 None:intergenic 15.0%
!! ATGAAAAAATTATTGAAATC+GGG - chr3_1:55773755-55773774 None:intergenic 15.0%
!! AAATATTAATTACTGTGAAA+GGG - chr3_1:55773787-55773806 None:intergenic 15.0%
!! ATCAAAATAAGGATTCATAT+CGG - chr3_1:55767805-55767824 None:intergenic 20.0%
!! ATTTAAAGATAAGAAAGTTC+AGG + chr3_1:55768622-55768641 Msa0363400:CDS 20.0%
!!! TTTTTTTTTTTACCAACTTG+GGG + chr3_1:55768769-55768788 Msa0363400:intron 20.0%
!! ACTATACACAAAATTTACTT+TGG + chr3_1:55768845-55768864 Msa0363400:intron 20.0%
!! AAATAGATTCAATCAAATAG+AGG + chr3_1:55769009-55769028 Msa0363400:intron 20.0%
!! AATAGATTCAATCAAATAGA+GGG + chr3_1:55769010-55769029 Msa0363400:intron 20.0%
!!! TAAAACAGATTCATATCTTT+TGG - chr3_1:55769097-55769116 None:intergenic 20.0%
!! TTGAAACTAGTATAATGAAA+AGG + chr3_1:55769337-55769356 Msa0363400:intron 20.0%
!! TCTATAAAAATCAAATACGA+TGG - chr3_1:55769967-55769986 None:intergenic 20.0%
!!! ATAAGATAATAGTGTTACTA+TGG - chr3_1:55770090-55770109 None:intergenic 20.0%
!! AAAGTATAGTTGTACATTAT+CGG + chr3_1:55770143-55770162 Msa0363400:intron 20.0%
!! ATGGTATTTAACATAGAATA+GGG - chr3_1:55770509-55770528 None:intergenic 20.0%
!! TATGGTATTTAACATAGAAT+AGG - chr3_1:55770510-55770529 None:intergenic 20.0%
!!! TTTTTATAATTCCGTATTGA+AGG + chr3_1:55770582-55770601 Msa0363400:intron 20.0%
!!! ACTTATAATTTTACACTTTC+AGG + chr3_1:55770978-55770997 Msa0363400:intron 20.0%
!!! AAGCTTCATTTTTTCTAAAA+CGG - chr3_1:55771450-55771469 None:intergenic 20.0%
!! AATTTCTCCTTTCTTAAAAT+AGG + chr3_1:55772771-55772790 Msa0363400:intron 20.0%
!! GTAATCAAATCAATTAAGAA+AGG - chr3_1:55772808-55772827 None:intergenic 20.0%
!! GTTCTTAATGTATATATCAT+AGG + chr3_1:55772881-55772900 Msa0363400:intron 20.0%
!! TATATATCATAGGATTAAGA+TGG + chr3_1:55772891-55772910 Msa0363400:intron 20.0%
!! TGAACATGATATATGAAATT+TGG - chr3_1:55773278-55773297 None:intergenic 20.0%
!! CTGAAAATACAAATTAGTAT+TGG + chr3_1:55773331-55773350 Msa0363400:intron 20.0%
!!! TTAGTTTGTATTTTTTCTTG+TGG - chr3_1:55773393-55773412 None:intergenic 20.0%
!! ATGGAGAAATTTAACAATAA+GGG - chr3_1:55773583-55773602 None:intergenic 20.0%
!! ATAATGAATAATTCATAGGT+CGG - chr3_1:55773727-55773746 None:intergenic 20.0%
!! AATATTAATTACTGTGAAAG+GGG - chr3_1:55773786-55773805 None:intergenic 20.0%
!! CAAATATTAATTACTGTGAA+AGG - chr3_1:55773788-55773807 None:intergenic 20.0%
!! TCACAGTAATTAATATTTGT+TGG + chr3_1:55773789-55773808 Msa0363400:intron 20.0%
!!! AATATTTGTTGGTTGAAATT+TGG + chr3_1:55773800-55773819 Msa0363400:intron 20.0%
!!! ATTTGGTTTAATTGCTTTTA+AGG + chr3_1:55773870-55773889 Msa0363400:intron 20.0%
!!! TGTTTTGTCAAATTACAAAA+GGG - chr3_1:55774082-55774101 None:intergenic 20.0%
!!! TTGTTTTGTCAAATTACAAA+AGG - chr3_1:55774083-55774102 None:intergenic 20.0%
!! TCATCTATATATTATCTGTT+TGG + chr3_1:55774271-55774290 Msa0363400:intron 20.0%
!!! ATGAATTTTGAGATAAAGAT+TGG + chr3_1:55774522-55774541 Msa0363400:three_prime_UTR 20.0%
! TCGAATCAAAAGTTCAAAAA+TGG + chr3_1:55767199-55767218 Msa0363400:CDS 25.0%
! AATCAAAAGTTCAAAAATGG+TGG + chr3_1:55767202-55767221 Msa0363400:CDS 25.0%
! ATCAAAAGTTCAAAAATGGT+GGG + chr3_1:55767203-55767222 Msa0363400:CDS 25.0%
! GAATTTAACTGTTGTTGATA+AGG + chr3_1:55767524-55767543 Msa0363400:CDS 25.0%
!!! CTAACAAAAGCATCAAAATA+AGG - chr3_1:55767816-55767835 None:intergenic 25.0%
!!! CTTATTTTGATGCTTTTGTT+AGG + chr3_1:55767814-55767833 Msa0363400:CDS 25.0%
! TTAATAATCGTATACTCTTG+CGG - chr3_1:55767963-55767982 None:intergenic 25.0%
! AGAGTATACGATTATTAAGA+TGG + chr3_1:55767965-55767984 Msa0363400:CDS 25.0%
! CACATATATAATCTCATTCA+AGG - chr3_1:55768282-55768301 None:intergenic 25.0%
!!! TTGTCTATTTTGATGGATAA+AGG + chr3_1:55768311-55768330 Msa0363400:CDS 25.0%
!! TTTCAAGTATGTTTGTTTCT+TGG - chr3_1:55768570-55768589 None:intergenic 25.0%
! AAGAAACAAACATACTTGAA+AGG + chr3_1:55768569-55768588 Msa0363400:CDS 25.0%
!! GTAAATTTTGTGTATAGTTG+AGG - chr3_1:55768843-55768862 None:intergenic 25.0%
! AAGATAGAGCAAAATCAATA+TGG + chr3_1:55769041-55769060 Msa0363400:intron 25.0%
! TTATGCCTTGGTTATAAAAA+TGG + chr3_1:55769169-55769188 Msa0363400:intron 25.0%
!!! CAATACCATTTTTATAACCA+AGG - chr3_1:55769177-55769196 None:intergenic 25.0%
! AGATTAGAATACTGTATACT+AGG - chr3_1:55769464-55769483 None:intergenic 25.0%
!! ATTTGAGTTATTATGCAACT+AGG - chr3_1:55769526-55769545 None:intergenic 25.0%
! ATTTCTGTTAATTGTTCTTG+TGG - chr3_1:55769580-55769599 None:intergenic 25.0%
! AAGTCAAGTTATTGATAAGT+AGG - chr3_1:55769792-55769811 None:intergenic 25.0%
!! ATCAATAACTTGACTTTTGA+AGG + chr3_1:55769796-55769815 Msa0363400:intron 25.0%
!!! TACCACATTGTTTTTGTATT+TGG + chr3_1:55769826-55769845 Msa0363400:intron 25.0%
! AGAAGAAACTATTGATAAGT+AGG - chr3_1:55769877-55769896 None:intergenic 25.0%
!!! GAAAAATAGTAGTTTTGCAT+TGG + chr3_1:55770367-55770386 Msa0363400:intron 25.0%
! AATGTTTAGTTGTACATCAT+CGG + chr3_1:55770550-55770569 Msa0363400:intron 25.0%
!!! CTTCTAAAATTACCAATATG+GGG - chr3_1:55770645-55770664 None:intergenic 25.0%
!!! CCTTCTAAAATTACCAATAT+GGG - chr3_1:55770646-55770665 None:intergenic 25.0%
!!! TCCTTCTAAAATTACCAATA+TGG - chr3_1:55770647-55770666 None:intergenic 25.0%
! CTTTGCATTCTTATTACATA+TGG + chr3_1:55770696-55770715 Msa0363400:intron 25.0%
! AACAAATTATGAGATGTATG+AGG - chr3_1:55770735-55770754 None:intergenic 25.0%
!!! AATTTCTAGTTGTAAAGAAC+AGG - chr3_1:55770775-55770794 None:intergenic 25.0%
! CTTTACAACTAGAAATTTAG+AGG + chr3_1:55770778-55770797 Msa0363400:intron 25.0%
!! CATTTTGTGCTAATAATGAA+TGG + chr3_1:55770850-55770869 Msa0363400:intron 25.0%
! TCAAAGAAAGGAAATAAGAA+AGG + chr3_1:55772247-55772266 Msa0363400:CDS 25.0%
! TATGTGAATGAACAATTTGA+CGG + chr3_1:55772316-55772335 Msa0363400:CDS 25.0%
! ATCAAATCAATTAAGAAAGG+AGG - chr3_1:55772805-55772824 None:intergenic 25.0%
!!! ATTGTTAGTTTTGATGGTTT+TGG - chr3_1:55773079-55773098 None:intergenic 25.0%
! AACCATCAAAACTAACAATA+AGG + chr3_1:55773080-55773099 Msa0363400:intron 25.0%
! ACCATCAAAACTAACAATAA+GGG + chr3_1:55773081-55773100 Msa0363400:intron 25.0%
! GAAATTTAACAATAAGGGAT+AGG - chr3_1:55773578-55773597 None:intergenic 25.0%
! CATGGAGAAATTTAACAATA+AGG - chr3_1:55773584-55773603 None:intergenic 25.0%
! TTAAATTTCTCCATGAACAT+TGG + chr3_1:55773589-55773608 Msa0363400:three_prime_UTR 25.0%
! TAAATTTCTCCATGAACATT+GGG + chr3_1:55773590-55773609 Msa0363400:three_prime_UTR 25.0%
! AAACACATGACAAAATATGA+AGG - chr3_1:55773680-55773699 None:intergenic 25.0%
! TAATGAATAATTCATAGGTC+GGG - chr3_1:55773726-55773745 None:intergenic 25.0%
! TCTAGATTTATGGATAGATT+TGG + chr3_1:55773853-55773872 Msa0363400:intron 25.0%
!! TTTTGTCAAATTACAAAAGG+GGG - chr3_1:55774080-55774099 None:intergenic 25.0%
!! GTTTTGTCAAATTACAAAAG+GGG - chr3_1:55774081-55774100 None:intergenic 25.0%
! TGTAATTTGACAAAACAAAC+AGG + chr3_1:55774085-55774104 Msa0363400:intron 25.0%
!! TTCAAAAGCATATGTTAACT+AGG + chr3_1:55774246-55774265 Msa0363400:intron 25.0%
!! TTTTATTAGAGAAGAGGTAA+TGG + chr3_1:55774409-55774428 Msa0363400:intron 25.0%
! ACAATTGTGTTCAATAGTTA+CGG + chr3_1:55774728-55774747 Msa0363400:three_prime_UTR 25.0%
!! ACTTGAGAATATTTTGTGTT+TGG + chr3_1:55774758-55774777 Msa0363400:three_prime_UTR 25.0%
ACATAAACAAGAGAAGATAG+CGG - chr3_1:55766944-55766963 None:intergenic 30.0%
! AAGAGAAAGAAAGGGTTTTA+GGG - chr3_1:55767012-55767031 None:intergenic 30.0%
! AAAGAGAAAGAAAGGGTTTT+AGG - chr3_1:55767013-55767032 None:intergenic 30.0%
GAGAAGAAAAGAGAAAGAAA+GGG - chr3_1:55767020-55767039 None:intergenic 30.0%
AGAGAAGAAAAGAGAAAGAA+AGG - chr3_1:55767021-55767040 None:intergenic 30.0%
! TAGAAATCTTTTACACCTGT+TGG - chr3_1:55767076-55767095 None:intergenic 30.0%
! AAGAATTTTTCACCTTCTTG+AGG - chr3_1:55767270-55767289 None:intergenic 30.0%
CAAGAAGGTGAAAAATTCTT+CGG + chr3_1:55767270-55767289 Msa0363400:CDS 30.0%
AAGAAGGTGAAAAATTCTTC+GGG + chr3_1:55767271-55767290 Msa0363400:CDS 30.0%
! TTCCCTTTTCCTTATATGAA+CGG + chr3_1:55767297-55767316 Msa0363400:CDS 30.0%
AACCGTTCATATAAGGAAAA+GGG - chr3_1:55767302-55767321 None:intergenic 30.0%
TAACCGTTCATATAAGGAAA+AGG - chr3_1:55767303-55767322 None:intergenic 30.0%
TGTAAGTAACCGTTCATATA+AGG - chr3_1:55767309-55767328 None:intergenic 30.0%
AAAATGAAAATGCTGTTGCT+GGG + chr3_1:55767571-55767590 Msa0363400:CDS 30.0%
TTTATCAATGGGAGATTATG+AGG + chr3_1:55767643-55767662 Msa0363400:CDS 30.0%
! TATTTCTGATGCTGAGATTT+CGG + chr3_1:55767674-55767693 Msa0363400:CDS 30.0%
AAATAAGACAACCACTTGTA+AGG - chr3_1:55767711-55767730 None:intergenic 30.0%
!! TTGATGATCTTAAGGCTTTT+GGG + chr3_1:55767745-55767764 Msa0363400:CDS 30.0%
!! ATTTTGATGCTTTTGTTAGG+TGG + chr3_1:55767817-55767836 Msa0363400:CDS 30.0%
GTATACGATTATTAAGATGG+AGG + chr3_1:55767968-55767987 Msa0363400:CDS 30.0%
!!! GGCTTTTGAGATTAATGAAA+CGG + chr3_1:55768121-55768140 Msa0363400:CDS 30.0%
!!! TTTTGAGATTAATGAAACGG+AGG + chr3_1:55768124-55768143 Msa0363400:CDS 30.0%
ATAATCTCATTCAAGGAAAG+AGG - chr3_1:55768275-55768294 None:intergenic 30.0%
!! TCCTATGTTGTCTATTTTGA+TGG + chr3_1:55768304-55768323 Msa0363400:CDS 30.0%
TCCATCAAAATAGACAACAT+AGG - chr3_1:55768308-55768327 None:intergenic 30.0%
!! ATTTTGATGGATAAAGGTAC+CGG + chr3_1:55768317-55768336 Msa0363400:CDS 30.0%
TACTTTGGTGAAATATGCAA+AGG + chr3_1:55768860-55768879 Msa0363400:intron 30.0%
!!! CATTCCACACTTTTTCTAAA+TGG + chr3_1:55768896-55768915 Msa0363400:intron 30.0%
CTAATCTTATACTCATTTGG+AGG - chr3_1:55768938-55768957 None:intergenic 30.0%
CTCCAAATGAGTATAAGATT+AGG + chr3_1:55768936-55768955 Msa0363400:intron 30.0%
TGCCTAATCTTATACTCATT+TGG - chr3_1:55768941-55768960 None:intergenic 30.0%
ATTCAATCAAATAGAGGGAA+GGG + chr3_1:55769015-55769034 Msa0363400:intron 30.0%
TTATAGATTGTTCACTTCCA+AGG + chr3_1:55769291-55769310 Msa0363400:intron 30.0%
! TGGTATTTTTCCACAAAGTT+AGG - chr3_1:55769497-55769516 None:intergenic 30.0%
! AAGTAGTATATCTAAGGCAA+AGG - chr3_1:55769731-55769750 None:intergenic 30.0%
TGCCAAATACAAAAACAATG+TGG - chr3_1:55769831-55769850 None:intergenic 30.0%
TTCATTGTAACTAACCATTG+AGG - chr3_1:55770263-55770282 None:intergenic 30.0%
TGTTGGAAAATGATGAAAAG+TGG - chr3_1:55770430-55770449 None:intergenic 30.0%
CAGAAATGGAAATATCATGT+TGG - chr3_1:55770447-55770466 None:intergenic 30.0%
! AATGCAATTTTCAGCATGTA+TGG - chr3_1:55770528-55770547 None:intergenic 30.0%
CATGTAGTAAACCTTCAATA+CGG - chr3_1:55770596-55770615 None:intergenic 30.0%
! TTTTGAATTCTACCCCATAT+TGG + chr3_1:55770630-55770649 Msa0363400:intron 30.0%
!! CCCATATTGGTAATTTTAGA+AGG + chr3_1:55770643-55770662 Msa0363400:intron 30.0%
TTAGAAGGAAACTACAGTAA+AGG + chr3_1:55770658-55770677 Msa0363400:intron 30.0%
!! TAATTTTACACTTTCAGGTG+AGG + chr3_1:55770983-55771002 Msa0363400:intron 30.0%
ATCAGTGGTACATTACATAT+GGG + chr3_1:55771078-55771097 Msa0363400:CDS 30.0%
AGTGTAATAAGCCATGTAAA+TGG - chr3_1:55771291-55771310 None:intergenic 30.0%
! ATGAAATATCAGTGGACTTA+GGG - chr3_1:55771424-55771443 None:intergenic 30.0%
AAATTTCAGAACTATTCGTC+AGG + chr3_1:55771649-55771668 Msa0363400:CDS 30.0%
!!! ATTTTGCTCAGTTGTTTTGA+CGG - chr3_1:55771897-55771916 None:intergenic 30.0%
ATCATAAAAGCCAGTCTTTA+GGG - chr3_1:55771945-55771964 None:intergenic 30.0%
ATGAGTATAGATTGTCATGT+GGG + chr3_1:55771981-55772000 Msa0363400:CDS 30.0%
CAAATAAACTCTGCATAATG+CGG - chr3_1:55772079-55772098 None:intergenic 30.0%
AGAATCCTGTAGATATTTGT+TGG - chr3_1:55772185-55772204 None:intergenic 30.0%
AGGATTCTATTGTTCTGATA+AGG + chr3_1:55772197-55772216 Msa0363400:CDS 30.0%
AGTTATGTATGCCTTTCTTA+AGG + chr3_1:55772476-55772495 Msa0363400:CDS 30.0%
TCCTTCTTATACCTTAAGAA+AGG - chr3_1:55772490-55772509 None:intergenic 30.0%
AAATCAATTAAGAAAGGAGG+AGG - chr3_1:55772802-55772821 None:intergenic 30.0%
ACTATACTAGTATTCTCACT+TGG - chr3_1:55772977-55772996 None:intergenic 30.0%
GAGAATACTAGTATAGTCAA+TGG + chr3_1:55772980-55772999 Msa0363400:intron 30.0%
!!! TCCCTTATTGTTAGTTTTGA+TGG - chr3_1:55773085-55773104 None:intergenic 30.0%
!! ACTGATTTTTACACATACAC+AGG - chr3_1:55773230-55773249 None:intergenic 30.0%
! GTCTATTTCTCGTCAAAATT+TGG - chr3_1:55773448-55773467 None:intergenic 30.0%
AATAAGCATGACAACACTAA+AGG - chr3_1:55773648-55773667 None:intergenic 30.0%
TCATGTGTTTCTTATTGTGA+TGG + chr3_1:55773690-55773709 Msa0363400:intron 30.0%
AATGAATAATTCATAGGTCG+GGG - chr3_1:55773725-55773744 None:intergenic 30.0%
! TTGTTGGTTGAAATTTGGTT+TGG + chr3_1:55773805-55773824 Msa0363400:intron 30.0%
! GTGGTTTTCACGAAAAATTT+TGG + chr3_1:55773920-55773939 Msa0363400:intron 30.0%
GCATATTCAATTCAAGATGA+AGG + chr3_1:55774142-55774161 Msa0363400:intron 30.0%
AAGGATTTGCAAAATGAGTT+CGG + chr3_1:55774161-55774180 Msa0363400:intron 30.0%
!! TTGACGTTTTATTAGAGAAG+AGG + chr3_1:55774403-55774422 Msa0363400:intron 30.0%
! GTAATGGAGATGAAATTAAG+AGG + chr3_1:55774425-55774444 Msa0363400:intron 30.0%
TATTGAACACAATTGTTGAC+TGG - chr3_1:55774724-55774743 None:intergenic 30.0%
CATGAAAGGATGGAGAATAA+GGG - chr3_1:55766897-55766916 None:intergenic 35.0%
! AACCCATTTTCTATTCCAAC+AGG + chr3_1:55767058-55767077 Msa0363400:intron 35.0%
CACCTGTTGGAATAGAAAAT+GGG - chr3_1:55767063-55767082 None:intergenic 35.0%
ACACCTGTTGGAATAGAAAA+TGG - chr3_1:55767064-55767083 None:intergenic 35.0%
TCAACACTGAATCAAATTCG+CGG + chr3_1:55767099-55767118 Msa0363400:CDS 35.0%
ACAAGTCTTCAAATCTGAAC+CGG + chr3_1:55767233-55767252 Msa0363400:CDS 35.0%
! AATTTTTCACCTTCTTGAGG+CGG - chr3_1:55767267-55767286 None:intergenic 35.0%
ATGAACGGTTACTTACATCT+AGG + chr3_1:55767312-55767331 Msa0363400:CDS 35.0%
CCAGTACAATGAAAAGCAAA+AGG - chr3_1:55767411-55767430 None:intergenic 35.0%
!! CCTTTTGCTTTTCATTGTAC+TGG + chr3_1:55767408-55767427 Msa0363400:CDS 35.0%
! TTGTACTGGTATGCCTATTA+AGG + chr3_1:55767422-55767441 Msa0363400:CDS 35.0%
TTATCAGCAGAAGCCTTAAT+AGG - chr3_1:55767438-55767457 None:intergenic 35.0%
! GTTGATAAGGATAAGAATGC+TGG + chr3_1:55767537-55767556 Msa0363400:CDS 35.0%
GAAAATGAAAATGCTGTTGC+TGG + chr3_1:55767570-55767589 Msa0363400:CDS 35.0%
CTGTTGCTGGGAAATTTAAA+GGG + chr3_1:55767583-55767602 Msa0363400:CDS 35.0%
AGTTTCAAGATCCTTACAAG+TGG + chr3_1:55767697-55767716 Msa0363400:CDS 35.0%
TTAAGATCATCAACAGCCAA+CGG - chr3_1:55767738-55767757 None:intergenic 35.0%
!!! GTTGATGATCTTAAGGCTTT+TGG + chr3_1:55767744-55767763 Msa0363400:CDS 35.0%
AACATCCTTAACAACCTTAC+CGG - chr3_1:55767865-55767884 None:intergenic 35.0%
GTAAGGTTGTTAAGGATGTT+AGG + chr3_1:55767865-55767884 Msa0363400:CDS 35.0%
!!! ACTGTTTTTTCGCCATTAGA+TGG + chr3_1:55767891-55767910 Msa0363400:CDS 35.0%
!!! CTGTTTTTTCGCCATTAGAT+GGG + chr3_1:55767892-55767911 Msa0363400:CDS 35.0%
TACGATTATTAAGATGGAGG+TGG + chr3_1:55767971-55767990 Msa0363400:CDS 35.0%
ACCTTAAACTTCTCAGGAAA+AGG - chr3_1:55768002-55768021 None:intergenic 35.0%
!! TCCTGAGAAGTTTAAGGTTT+TGG + chr3_1:55768004-55768023 Msa0363400:CDS 35.0%
TCCAAAACCTTAAACTTCTC+AGG - chr3_1:55768008-55768027 None:intergenic 35.0%
!! TGAGAAGTTTAAGGTTTTGG+AGG + chr3_1:55768007-55768026 Msa0363400:CDS 35.0%
!!! GAGAAGTTTAAGGTTTTGGA+GGG + chr3_1:55768008-55768027 Msa0363400:CDS 35.0%
! AAAGAAGGTTTTTCTTGCTG+CGG + chr3_1:55768031-55768050 Msa0363400:CDS 35.0%
TGTATGGTCAAACAAATGCT+TGG + chr3_1:55768075-55768094 Msa0363400:CDS 35.0%
GTATGGTCAAACAAATGCTT+GGG + chr3_1:55768076-55768095 Msa0363400:CDS 35.0%
TTGCTTACCAAAATCACTCT+AGG + chr3_1:55768180-55768199 Msa0363400:CDS 35.0%
TGCTTACCAAAATCACTCTA+GGG + chr3_1:55768181-55768200 Msa0363400:CDS 35.0%
ATGATAGGCAAAACCTCAAA+TGG - chr3_1:55768455-55768474 None:intergenic 35.0%
!! GAGATTTGATTTTCATCTCC+AGG - chr3_1:55768520-55768539 None:intergenic 35.0%
TACTTGAAAGGATTCACTGA+CGG + chr3_1:55768581-55768600 Msa0363400:CDS 35.0%
! AAAAGCTTGCTCCTAATCAA+GGG - chr3_1:55768656-55768675 None:intergenic 35.0%
!! TTAATTAACTTGCCCCAAGT+TGG - chr3_1:55768784-55768803 None:intergenic 35.0%
CCTTCCATTTAGAAAAAGTG+TGG - chr3_1:55768903-55768922 None:intergenic 35.0%
!!! CCACACTTTTTCTAAATGGA+AGG + chr3_1:55768900-55768919 Msa0363400:intron 35.0%
!! TCTAGTTCACCTTTTACCAA+GGG - chr3_1:55768965-55768984 None:intergenic 35.0%
GATTCAATCAAATAGAGGGA+AGG + chr3_1:55769014-55769033 Msa0363400:intron 35.0%
TTACTGTCATCTCTGATACA+TGG + chr3_1:55769066-55769085 Msa0363400:intron 35.0%
CAAGCAAAATGTTGCTCAAA+TGG + chr3_1:55769127-55769146 Msa0363400:intron 35.0%
CAATGGTAACAATTATGCCT+TGG + chr3_1:55769157-55769176 Msa0363400:intron 35.0%
AGTTTCATTCGTGTGATAAC+CGG + chr3_1:55769206-55769225 Msa0363400:intron 35.0%
!! CTCTGAGTTTTATGAGTAAC+CGG - chr3_1:55769228-55769247 None:intergenic 35.0%
CATGAAATTCAAAGGACTCT+AGG - chr3_1:55769254-55769273 None:intergenic 35.0%
GTGCATCACATGAAATTCAA+AGG - chr3_1:55769262-55769281 None:intergenic 35.0%
ATTATGCAACTAGGTTGTGA+TGG - chr3_1:55769517-55769536 None:intergenic 35.0%
GCATAGATAAACAGAAAGTG+TGG + chr3_1:55769688-55769707 Msa0363400:intron 35.0%
ACCAGGAAGTAGTATATCTA+AGG - chr3_1:55769737-55769756 None:intergenic 35.0%
TTAGATATACTACTTCCTGG+TGG + chr3_1:55769736-55769755 Msa0363400:intron 35.0%
ATTGTAAATCTACAACCACC+AGG - chr3_1:55769754-55769773 None:intergenic 35.0%
TGATAAGTAGGCAATAGAGT+AGG - chr3_1:55769865-55769884 None:intergenic 35.0%
AGTTGTAAAGAACAGGTTGT+GGG - chr3_1:55770768-55770787 None:intergenic 35.0%
TAGTTGTAAAGAACAGGTTG+TGG - chr3_1:55770769-55770788 None:intergenic 35.0%
! AAGTTGACTCATGATATTGC+AGG - chr3_1:55770943-55770962 None:intergenic 35.0%
GATCAGTGGTACATTACATA+TGG + chr3_1:55771077-55771096 Msa0363400:CDS 35.0%
TCAGTGGTACATTACATATG+GGG + chr3_1:55771079-55771098 Msa0363400:CDS 35.0%
!!! ACATGGTTTTGAGCATACTT+TGG + chr3_1:55771169-55771188 Msa0363400:CDS 35.0%
!!! CATGGTTTTGAGCATACTTT+GGG + chr3_1:55771170-55771189 Msa0363400:CDS 35.0%
TTGCAGAACAATGACATGTA+TGG + chr3_1:55771323-55771342 Msa0363400:CDS 35.0%
!! GTCTGGGATTATATTTTCTG+TGG + chr3_1:55771389-55771408 Msa0363400:CDS 35.0%
! TGGGATTATATTTTCTGTGG+TGG + chr3_1:55771392-55771411 Msa0363400:CDS 35.0%
! GATGAAATATCAGTGGACTT+AGG - chr3_1:55771425-55771444 None:intergenic 35.0%
AACGGATGATGAAATATCAG+TGG - chr3_1:55771432-55771451 None:intergenic 35.0%
ACTGGTATCCATTTGATCTT+CGG + chr3_1:55771480-55771499 Msa0363400:CDS 35.0%
! GGCAAAAGGTAAGATGATTT+TGG - chr3_1:55771526-55771545 None:intergenic 35.0%
AAATTGCAGTGTGGTTGTAA+AGG - chr3_1:55771547-55771566 None:intergenic 35.0%
TCTCAGAATTGAGCATTAAG+TGG - chr3_1:55771610-55771629 None:intergenic 35.0%
! TCTGAAATTTCCAGTAGACT+TGG - chr3_1:55771639-55771658 None:intergenic 35.0%
TGCTGTCTCAAACACAAAAT+TGG - chr3_1:55771744-55771763 None:intergenic 35.0%
TTCAAACCATGTAAGCTCTT+TGG - chr3_1:55771789-55771808 None:intergenic 35.0%
GATCATAAAAGCCAGTCTTT+AGG - chr3_1:55771946-55771965 None:intergenic 35.0%
GATGAGTATAGATTGTCATG+TGG + chr3_1:55771980-55771999 Msa0363400:CDS 35.0%
TGAGTATAGATTGTCATGTG+GGG + chr3_1:55771982-55772001 Msa0363400:CDS 35.0%
TAGTGGTTTCAATCGTGATT+TGG + chr3_1:55772006-55772025 Msa0363400:CDS 35.0%
CGCATTATGCAGAGTTTATT+TGG + chr3_1:55772077-55772096 Msa0363400:CDS 35.0%
!! TTGGAGAGAGATTTTGAAGA+AGG + chr3_1:55772096-55772115 Msa0363400:CDS 35.0%
!! AGAGAGATTTTGAAGAAGGA+TGG + chr3_1:55772100-55772119 Msa0363400:CDS 35.0%
!! TTTGAAGAAGGATGGTTTTG+TGG + chr3_1:55772108-55772127 Msa0363400:CDS 35.0%
CAAGTGAACTTGATTTCTGT+TGG - chr3_1:55772289-55772308 None:intergenic 35.0%
AGAAATCAAGTTCACTTGCT+TGG + chr3_1:55772291-55772310 Msa0363400:CDS 35.0%
TGAATGAACAATTTGACGGT+TGG + chr3_1:55772320-55772339 Msa0363400:CDS 35.0%
AATCTTCGTTAAAGCTGTTC+TGG - chr3_1:55772369-55772388 None:intergenic 35.0%
GCCTTTCTTAAGGTATAAGA+AGG + chr3_1:55772486-55772505 Msa0363400:CDS 35.0%
AGAACCTCAATTTCACCAAA+CGG - chr3_1:55772556-55772575 None:intergenic 35.0%
TTGGTGAAATTGAGGTTCTT+CGG + chr3_1:55772557-55772576 Msa0363400:CDS 35.0%
TTCAAAAGAGGTTGTAGATG+TGG + chr3_1:55772612-55772631 Msa0363400:CDS 35.0%
AACTTACCCAGTATCTACAT+GGG - chr3_1:55772745-55772764 None:intergenic 35.0%
AAACTTACCCAGTATCTACA+TGG - chr3_1:55772746-55772765 None:intergenic 35.0%
!! GGTGTGACCTATTTTAAGAA+AGG - chr3_1:55772781-55772800 None:intergenic 35.0%
TTGCTCCTTCAGATAACAAT+GGG - chr3_1:55773011-55773030 None:intergenic 35.0%
GTAAGAGAACAATGATGAAG+TGG - chr3_1:55773052-55773071 None:intergenic 35.0%
AGGTACACAGGATTCTATAA+AGG - chr3_1:55773210-55773229 None:intergenic 35.0%
CAGTACTAGTAGTACTTCAA+TGG + chr3_1:55773246-55773265 Msa0363400:intron 35.0%
TCAGTAACTAGCATATCTCA+TGG - chr3_1:55773315-55773334 None:intergenic 35.0%
TAACCATAACATGTCTCCAA+TGG + chr3_1:55773516-55773535 Msa0363400:three_prime_UTR 35.0%
ATGAATAATTCATAGGTCGG+GGG - chr3_1:55773724-55773743 None:intergenic 35.0%
GCACATGAAGTCTAGATTTA+TGG + chr3_1:55773843-55773862 Msa0363400:intron 35.0%
! ATCCTTTAGAGACAAAACTG+AGG + chr3_1:55773969-55773988 Msa0363400:intron 35.0%
! TCCTTTAGAGACAAAACTGA+GGG + chr3_1:55773970-55773989 Msa0363400:intron 35.0%
TTGACAAAACAAACAGGTCA+TGG + chr3_1:55774091-55774110 Msa0363400:intron 35.0%
CAAACAGGTCATGGTTTATA+AGG + chr3_1:55774100-55774119 Msa0363400:intron 35.0%
TGAATATGCAATGTATGTGC+AGG - chr3_1:55774131-55774150 None:intergenic 35.0%
! GGCTTTTATGTGGAAAGTTT+TGG + chr3_1:55774323-55774342 Msa0363400:intron 35.0%
TTGGATTCTTTCAGAGTTCA+TGG + chr3_1:55774342-55774361 Msa0363400:intron 35.0%
! AAGAGGCATAAGTGAAGTTT+AGG + chr3_1:55774442-55774461 Msa0363400:intron 35.0%
!!! TAGGCTTGTTTTAATGCATC+TGG + chr3_1:55774461-55774480 Msa0363400:intron 35.0%
!!! CTTGTTTTAATGCATCTGGT+TGG + chr3_1:55774465-55774484 Msa0363400:intron 35.0%
ATAAAGATTGGAACTGCAGT+GGG + chr3_1:55774534-55774553 Msa0363400:three_prime_UTR 35.0%
GCATGAAAGGATGGAGAATA+AGG - chr3_1:55766898-55766917 None:intergenic 40.0%
!! AGTACTGTAGAGTGTTGTAG+AGG - chr3_1:55766920-55766939 None:intergenic 40.0%
TATAACAAGTAGCGGCGAAA+TGG + chr3_1:55767128-55767147 Msa0363400:CDS 40.0%
CAAGTCTTCAAATCTGAACC+GGG + chr3_1:55767234-55767253 Msa0363400:CDS 40.0%
!! TTCTGCTGATAAGCTTGCTA+GGG + chr3_1:55767446-55767465 Msa0363400:CDS 40.0%
! TCAACAGTTTGGTAATCCTC+CGG + chr3_1:55767473-55767492 Msa0363400:CDS 40.0%
TCTAATTCCTCGATTTCCTC+GGG - chr3_1:55767504-55767523 None:intergenic 40.0%
CTCTAATTCCTCGATTTCCT+CGG - chr3_1:55767505-55767524 None:intergenic 40.0%
GATAAGGATAAGAATGCTGG+TGG + chr3_1:55767540-55767559 Msa0363400:CDS 40.0%
GCTGTTGCTGGGAAATTTAA+AGG + chr3_1:55767582-55767601 Msa0363400:CDS 40.0%
ATCGAAAGTTGCTGCGAAAT+CGG + chr3_1:55767611-55767630 Msa0363400:CDS 40.0%
!!! GTTGTCTTATTTTCCTCCGT+TGG + chr3_1:55767719-55767738 Msa0363400:CDS 40.0%
!! GTTGGCTGTTGATGATCTTA+AGG + chr3_1:55767737-55767756 Msa0363400:CDS 40.0%
!!! GATCTTAAGGCTTTTGGGTT+TGG + chr3_1:55767750-55767769 Msa0363400:CDS 40.0%
!!! CTTTTGGGTTTGGTTGTGAT+TGG + chr3_1:55767760-55767779 Msa0363400:CDS 40.0%
! CTTTTGTTAGGTGGCATATG+AGG + chr3_1:55767826-55767845 Msa0363400:CDS 40.0%
! GCCTTTTCCTGAGAAGTTTA+AGG + chr3_1:55767998-55768017 Msa0363400:CDS 40.0%
!!! TAAGGTTTTGGAGGGAAAGA+AGG + chr3_1:55768016-55768035 Msa0363400:CDS 40.0%
GTTTGACCATACATAGTCTC+AGG - chr3_1:55768068-55768087 None:intergenic 40.0%
TGTTGCCTGATGGGAAATAT+GGG + chr3_1:55768099-55768118 Msa0363400:CDS 40.0%
GTAAGCTCAAGCAAACAAGT+CGG - chr3_1:55768218-55768237 None:intergenic 40.0%
! GACTTGTTTGCTTGAGCTTA+CGG + chr3_1:55768217-55768236 Msa0363400:CDS 40.0%
ACTTGTTTGCTTGAGCTTAC+GGG + chr3_1:55768218-55768237 Msa0363400:CDS 40.0%
AAGGAAAGAGGAGATTTCAC+AGG - chr3_1:55768263-55768282 None:intergenic 40.0%
!! AGTTTGGTGTCAAGGATGAA+TGG + chr3_1:55768423-55768442 Msa0363400:CDS 40.0%
!! GTTTGGTGTCAAGGATGAAT+GGG + chr3_1:55768424-55768443 Msa0363400:CDS 40.0%
! AATGGCGGAACTTCAATGAT+AGG - chr3_1:55768470-55768489 None:intergenic 40.0%
ATCATTGAAGTTCCGCCATT+TGG + chr3_1:55768470-55768489 Msa0363400:CDS 40.0%
ACTGACGGAACTATGATTGT+CGG + chr3_1:55768596-55768615 Msa0363400:CDS 40.0%
! CAAAAGCTTGCTCCTAATCA+AGG - chr3_1:55768657-55768676 None:intergenic 40.0%
! CTTGATTAGGAGCAAGCTTT+TGG + chr3_1:55768655-55768674 Msa0363400:CDS 40.0%
GTATAAGATTAGGCATCCCT+TGG + chr3_1:55768946-55768965 Msa0363400:intron 40.0%
ATTAGGCATCCCTTGGTAAA+AGG + chr3_1:55768953-55768972 Msa0363400:intron 40.0%
!! CTCTAGTTCACCTTTTACCA+AGG - chr3_1:55768966-55768985 None:intergenic 40.0%
TGTCATCTCTGATACATGGA+TGG + chr3_1:55769070-55769089 Msa0363400:intron 40.0%
GCTCAAATGGTTAGCAACAA+TGG + chr3_1:55769140-55769159 Msa0363400:intron 40.0%
ATTGTTCACTTCCAAGGCTA+TGG + chr3_1:55769297-55769316 Msa0363400:intron 40.0%
TTGTTCACTTCCAAGGCTAT+GGG + chr3_1:55769298-55769317 Msa0363400:intron 40.0%
AGCTCTCAATTGACGTGATT+AGG + chr3_1:55769391-55769410 Msa0363400:intron 40.0%
GCCTTAGATATACTACTTCC+TGG + chr3_1:55769733-55769752 Msa0363400:intron 40.0%
CCATTGAGGCAAACAAATCA+TGG - chr3_1:55770018-55770037 None:intergenic 40.0%
!! CCATGATTTGTTTGCCTCAA+TGG + chr3_1:55770015-55770034 Msa0363400:intron 40.0%
! AATTTTGCGTGTGACCATTG+AGG - chr3_1:55770032-55770051 None:intergenic 40.0%
AATGCAAGTTTGAGCATGTG+TGG - chr3_1:55770121-55770140 None:intergenic 40.0%
ACTGGTTAACGGTACAGAAA+TGG - chr3_1:55770461-55770480 None:intergenic 40.0%
TTACATATGGGGAGTCAGAA+TGG + chr3_1:55771090-55771109 Msa0363400:CDS 40.0%
ATCGGATTCGACCATTTACA+TGG + chr3_1:55771277-55771296 Msa0363400:CDS 40.0%
! ATATCAGTGGACTTAGGGAA+AGG - chr3_1:55771419-55771438 None:intergenic 40.0%
TGAAGCTTGAGTTTGAGTAC+TGG + chr3_1:55771462-55771481 Msa0363400:CDS 40.0%
CTGGTATCCATTTGATCTTC+GGG + chr3_1:55771481-55771500 Msa0363400:CDS 40.0%
AGTGTGGTTGTAAAGGCAAA+AGG - chr3_1:55771540-55771559 None:intergenic 40.0%
GAGAAAATGTCCAAGTCTAC+TGG + chr3_1:55771626-55771645 Msa0363400:CDS 40.0%
AACTATTCGTCAGGCAATTG+AGG + chr3_1:55771658-55771677 Msa0363400:CDS 40.0%
! TGTGTTTGAGACAGCAAATG+CGG + chr3_1:55771748-55771767 Msa0363400:CDS 40.0%
TACATGGTTTGAAGAGACTC+TGG + chr3_1:55771796-55771815 Msa0363400:CDS 40.0%
GCAGAATCTTCTATGAGAAC+TGG + chr3_1:55771821-55771840 Msa0363400:CDS 40.0%
ACACGATCAGCATAGATAGA+CGG - chr3_1:55771851-55771870 None:intergenic 40.0%
!!! GACTGGCTTTTATGATCTTC+AGG + chr3_1:55771949-55771968 Msa0363400:CDS 40.0%
TTTATGATCTTCAGGCTGCT+AGG + chr3_1:55771957-55771976 Msa0363400:CDS 40.0%
TTATGATCTTCAGGCTGCTA+GGG + chr3_1:55771958-55771977 Msa0363400:CDS 40.0%
!! GTTTCAATCGTGATTTGGTG+CGG + chr3_1:55772011-55772030 Msa0363400:CDS 40.0%
TGTTGGCACTCTTTAGTGTA+AGG - chr3_1:55772168-55772187 None:intergenic 40.0%
GAGTGCCAACAAATATCTAC+AGG + chr3_1:55772177-55772196 Msa0363400:CDS 40.0%
TTGCTTCAGAAGCAACTTTC+AGG + chr3_1:55772223-55772242 Msa0363400:CDS 40.0%
CAACTTTCAGGCTCAAAGAA+AGG + chr3_1:55772235-55772254 Msa0363400:CDS 40.0%
ATTTCTGTTGGCACTACAAC+AGG - chr3_1:55772277-55772296 None:intergenic 40.0%
!! AGCTGTTCTGGAGAATGTTA+AGG - chr3_1:55772357-55772376 None:intergenic 40.0%
! AGATTCTCGAACTTTTGCTC+CGG + chr3_1:55772384-55772403 Msa0363400:CDS 40.0%
TGCTCCGGAATCAGAAATTA+TGG + chr3_1:55772399-55772418 Msa0363400:CDS 40.0%
TCCGGAATCAGAAATTATGG+CGG + chr3_1:55772402-55772421 Msa0363400:CDS 40.0%
GCTTTACAACAGAGTTCTGT+AGG + chr3_1:55772424-55772443 Msa0363400:CDS 40.0%
GTATAAGAAGGAAGAAGCGA+TGG + chr3_1:55772498-55772517 Msa0363400:CDS 40.0%
AAACGGCAGTCTCAAATTCA+GGG - chr3_1:55772539-55772558 None:intergenic 40.0%
TGGTGAAATTGAGGTTCTTC+GGG + chr3_1:55772558-55772577 Msa0363400:CDS 40.0%
GAGACAGATAGGTTCAAAAG+AGG + chr3_1:55772600-55772619 Msa0363400:CDS 40.0%
TATCTACATGGGCAAGAAGA+CGG - chr3_1:55772734-55772753 None:intergenic 40.0%
TTCTTGCCCATGTAGATACT+GGG + chr3_1:55772736-55772755 Msa0363400:exon 40.0%
ACAGACCCATTGTTATCTGA+AGG + chr3_1:55773003-55773022 Msa0363400:intron 40.0%
GTTGCTCCTTCAGATAACAA+TGG - chr3_1:55773012-55773031 None:intergenic 40.0%
TATCTGAAGGAGCAACTTGT+TGG + chr3_1:55773016-55773035 Msa0363400:intron 40.0%
AGAGAACAATGATGAAGTGG+AGG - chr3_1:55773049-55773068 None:intergenic 40.0%
GGCACAGTTGATTGTGAATT+GGG - chr3_1:55773537-55773556 None:intergenic 40.0%
TGGCACAGTTGATTGTGAAT+TGG - chr3_1:55773536-55773555 None:intergenic 40.0%
TTCACAATCAACTGTGCCAT+TGG + chr3_1:55773129-55773148 Msa0363400:intron 40.0%
TAACCATGACATGTCTCCAA+TGG - chr3_1:55773148-55773167 None:intergenic 40.0%
TATAAAGGAACACAGAGTGC+GGG - chr3_1:55773195-55773214 None:intergenic 40.0%
CTATAAAGGAACACAGAGTG+CGG - chr3_1:55773196-55773215 None:intergenic 40.0%
TTACACATACACAGGTACAC+AGG - chr3_1:55773222-55773241 None:intergenic 40.0%
ACGAGAAATAGACACTACAC+AGG + chr3_1:55773455-55773474 Msa0363400:intron 40.0%
TTCACAATCAACTGTGCCAT+TGG - chr3_1:55773129-55773148 None:intergenic 40.0%
TGGCACAGTTGATTGTGAAT+TGG + chr3_1:55773536-55773555 Msa0363400:three_prime_UTR 40.0%
GGCACAGTTGATTGTGAATT+GGG + chr3_1:55773537-55773556 Msa0363400:three_prime_UTR 40.0%
CTTAACTCACCCAATGTTCA+TGG - chr3_1:55773602-55773621 None:intergenic 40.0%
TTTGTGTTTCTCCAAGCTTG+TGG + chr3_1:55773901-55773920 Msa0363400:intron 40.0%
TTTCGTGAAAACCACAAGCT+TGG - chr3_1:55773915-55773934 None:intergenic 40.0%
!! TCCCTCAGTTTTGTCTCTAA+AGG - chr3_1:55773974-55773993 None:intergenic 40.0%
ATCCATAAACTGAGAAGCAG+AGG + chr3_1:55774043-55774062 Msa0363400:intron 40.0%
TCCATAAACTGAGAAGCAGA+GGG + chr3_1:55774044-55774063 Msa0363400:intron 40.0%
! TGAGTGAAACCTGTTTTGCA+TGG + chr3_1:55774295-55774314 Msa0363400:intron 40.0%
!!! CTGGTTGGTTTTCATTTTGC+AGG + chr3_1:55774480-55774499 Msa0363400:intron 40.0%
GATAAAGATTGGAACTGCAG+TGG + chr3_1:55774533-55774552 Msa0363400:three_prime_UTR 40.0%
AACTTCAGCATGTTCTCACA+AGG - chr3_1:55774585-55774604 None:intergenic 40.0%
! GTTGTAGAGGCATGAAAGGA+TGG - chr3_1:55766907-55766926 None:intergenic 45.0%
! GAGTGTTGTAGAGGCATGAA+AGG - chr3_1:55766911-55766930 None:intergenic 45.0%
ACCTTTGTGTGAGATGCGAT+GGG - chr3_1:55766980-55766999 None:intergenic 45.0%
TACCTTTGTGTGAGATGCGA+TGG - chr3_1:55766981-55767000 None:intergenic 45.0%
ACACTGAATCAAATTCGCGG+CGG + chr3_1:55767102-55767121 Msa0363400:CDS 45.0%
! CTTCTGCTGATAAGCTTGCT+AGG + chr3_1:55767445-55767464 Msa0363400:CDS 45.0%
GCTAGGGAGATTCAACAGTT+TGG + chr3_1:55767462-55767481 Msa0363400:CDS 45.0%
TCGATTTCCTCGGGAAAAAC+CGG - chr3_1:55767495-55767514 None:intergenic 45.0%
TCGAAAGTTGCTGCGAAATC+GGG + chr3_1:55767612-55767631 Msa0363400:CDS 45.0%
! TGGGAGATTATGAGGAGTGT+TGG + chr3_1:55767651-55767670 Msa0363400:CDS 45.0%
! GGTTTGGTTGTGATTGGAGA+AGG + chr3_1:55767766-55767785 Msa0363400:CDS 45.0%
GTGGCATATGAGGAAGTTGA+AGG + chr3_1:55767836-55767855 Msa0363400:CDS 45.0%
TTGAGGCCTGAGACTATGTA+TGG + chr3_1:55768059-55768078 Msa0363400:CDS 45.0%
GTGTTGCCTGATGGGAAATA+TGG + chr3_1:55768098-55768117 Msa0363400:CDS 45.0%
GTTGCCTGATGGGAAATATG+GGG + chr3_1:55768100-55768119 Msa0363400:CDS 45.0%
AAAGCCCCATATTTCCCATC+AGG - chr3_1:55768107-55768126 None:intergenic 45.0%
!! AGGTGTTTGTTGTAGCGCAT+AGG + chr3_1:55768144-55768163 Msa0363400:CDS 45.0%
!! GGTGTTTGTTGTAGCGCATA+GGG + chr3_1:55768145-55768164 Msa0363400:CDS 45.0%
!! GAGGTACCCTAGAGTGATTT+TGG - chr3_1:55768190-55768209 None:intergenic 45.0%
CTTACGGGTCAGGATTTGAT+CGG + chr3_1:55768233-55768252 Msa0363400:CDS 45.0%
TTACGGGTCAGGATTTGATC+GGG + chr3_1:55768234-55768253 Msa0363400:CDS 45.0%
TAGTCATCAGGAGAGTCACT+AGG - chr3_1:55768359-55768378 None:intergenic 45.0%
TGACTCTCCTGATGACTACA+TGG + chr3_1:55768361-55768380 Msa0363400:CDS 45.0%
! TGAATGGGTGTTGCCATTTG+AGG + chr3_1:55768439-55768458 Msa0363400:CDS 45.0%
TCTGCGCACTTGTTTCCAAA+TGG - chr3_1:55768488-55768507 None:intergenic 45.0%
AGGAAGCTAAGCCCTTGATT+AGG + chr3_1:55768642-55768661 Msa0363400:CDS 45.0%
!! AGGAGCAAGCTTTTGGAAAC+AGG + chr3_1:55768662-55768681 Msa0363400:CDS 45.0%
TGTTCACTTCCAAGGCTATG+GGG + chr3_1:55769299-55769318 Msa0363400:intron 45.0%
TGTGCATGCTCCTAACTTTG+TGG + chr3_1:55769484-55769503 Msa0363400:intron 45.0%
! GTGTTACTATGGCTGAGAGA+CGG - chr3_1:55770079-55770098 None:intergenic 45.0%
CCATTGAGGCAAACAGATCA+TGG - chr3_1:55770249-55770268 None:intergenic 45.0%
CCATGATCTGTTTGCCTCAA+TGG + chr3_1:55770246-55770265 Msa0363400:intron 45.0%
!! AATGCTAAAGAGTGCCCTTG+AGG - chr3_1:55770485-55770504 None:intergenic 45.0%
TGTAAAGAACAGGTTGTGGG+AGG - chr3_1:55770765-55770784 None:intergenic 45.0%
AAGAGGGTGATGTCTAGATC+TGG + chr3_1:55771029-55771048 Msa0363400:CDS 45.0%
!! TTGTAGCTCTGACAGATCAG+TGG + chr3_1:55771063-55771082 Msa0363400:CDS 45.0%
TATCATGATGAGACGCGACA+TGG + chr3_1:55771152-55771171 Msa0363400:CDS 45.0%
!! GTTTTGAGCATACTTTGGGC+TGG + chr3_1:55771174-55771193 Msa0363400:CDS 45.0%
!! TTTGGGCTGGTTGAATCAGT+GGG + chr3_1:55771187-55771206 Msa0363400:CDS 45.0%
TGCTCACGTTCATTTGGTCT+TGG + chr3_1:55771212-55771231 Msa0363400:CDS 45.0%
TCTTGGCACACGTATACCAT+GGG + chr3_1:55771229-55771248 Msa0363400:CDS 45.0%
ACTAGGAACTGTTCATCCCA+TGG - chr3_1:55771248-55771267 None:intergenic 45.0%
GTTCCTAGTCGAGTCTCTAT+CGG + chr3_1:55771259-55771278 Msa0363400:CDS 45.0%
AATCCGATAGAGACTCGACT+AGG - chr3_1:55771265-55771284 None:intergenic 45.0%
ACATCATCAGTCAGTTGCTG+AGG - chr3_1:55771371-55771390 None:intergenic 45.0%
! AGCAACTGACTGATGATGTC+TGG + chr3_1:55771372-55771391 Msa0363400:CDS 45.0%
! GCAACTGACTGATGATGTCT+GGG + chr3_1:55771373-55771392 Msa0363400:CDS 45.0%
TGATGCTACACGCTTCTCTT+TGG + chr3_1:55771691-55771710 Msa0363400:CDS 45.0%
TTTCGAGAAGCCCTAAAGAC+TGG + chr3_1:55771932-55771951 Msa0363400:CDS 45.0%
!!! TGATTTGGTGCGGCGTTTTA+TGG + chr3_1:55772021-55772040 Msa0363400:CDS 45.0%
TCTGCATAATGCGGACAGAT+AGG - chr3_1:55772070-55772089 None:intergenic 45.0%
!!! GAAGGATGGTTTTGTGGTGA+AGG + chr3_1:55772114-55772133 Msa0363400:CDS 45.0%
GCACTCTTTAGTGTAAGGTC+AGG - chr3_1:55772163-55772182 None:intergenic 45.0%
GCCGCCATAATTTCTGATTC+CGG - chr3_1:55772406-55772425 None:intergenic 45.0%
CAAACGGCAGTCTCAAATTC+AGG - chr3_1:55772540-55772559 None:intergenic 45.0%
! CTGAATTTGAGACTGCCGTT+TGG + chr3_1:55772538-55772557 Msa0363400:CDS 45.0%
! ACTGCCGTTTGGTGAAATTG+AGG + chr3_1:55772549-55772568 Msa0363400:CDS 45.0%
TGAGGTTCTTCGGGAAAACT+TGG + chr3_1:55772567-55772586 Msa0363400:CDS 45.0%
GACTCGATCAAGAGACAGAT+AGG + chr3_1:55772589-55772608 Msa0363400:CDS 45.0%
!! TGCAGCTGATGCTGATTCTT+TGG + chr3_1:55772645-55772664 Msa0363400:CDS 45.0%
! GCTGATTCTTTGGCTAAAGC+TGG + chr3_1:55772655-55772674 Msa0363400:CDS 45.0%
CTTCTTGCCCATGTAGATAC+TGG + chr3_1:55772735-55772754 Msa0363400:exon 45.0%
ATAAAGGAACACAGAGTGCG+GGG - chr3_1:55773194-55773213 None:intergenic 45.0%
! GTGCCATTGGAGACATGTTA+TGG - chr3_1:55773522-55773541 None:intergenic 45.0%
AATAATTCATAGGTCGGGGG+AGG - chr3_1:55773721-55773740 None:intergenic 45.0%
CAAAACTGAGGGATGAAGCA+AGG + chr3_1:55773981-55774000 Msa0363400:intron 45.0%
GGGATGAAGCAAGGAAATGA+TGG + chr3_1:55773990-55774009 Msa0363400:intron 45.0%
! AACCTGTTTTGCATGGTGAG+TGG + chr3_1:55774302-55774321 Msa0363400:intron 45.0%
! CATGGTGAGTGGCTTTTATG+TGG + chr3_1:55774313-55774332 Msa0363400:intron 45.0%
!! ATAAATAAAATTTGATAAAA+AGG - chr3_1:55772830-55772849 None:intergenic 5.0%
! TGTGAGATGCGATGGGGTTT+TGG - chr3_1:55766973-55766992 None:intergenic 50.0%
CCTTTGTGTGAGATGCGATG+GGG - chr3_1:55766979-55766998 None:intergenic 50.0%
!! TCTTGAGGCGGTTTGTTACC+CGG - chr3_1:55767255-55767274 None:intergenic 50.0%
GGTAACAAACCGCCTCAAGA+AGG + chr3_1:55767255-55767274 Msa0363400:CDS 50.0%
TTCGAAGCTTGAATTCGCCG+CGG + chr3_1:55767350-55767369 Msa0363400:CDS 50.0%
! TAATCCTCCGGTTTTTCCCG+AGG + chr3_1:55767485-55767504 Msa0363400:CDS 50.0%
ATTTCCTCGGGAAAAACCGG+AGG - chr3_1:55767492-55767511 None:intergenic 50.0%
! GGTTTTTCCCGAGGAAATCG+AGG + chr3_1:55767494-55767513 Msa0363400:CDS 50.0%
AAAGTTGCTGCGAAATCGGG+TGG + chr3_1:55767615-55767634 Msa0363400:CDS 50.0%
AAGTTGCTGCGAAATCGGGT+GGG + chr3_1:55767616-55767635 Msa0363400:CDS 50.0%
GGGTGGGCAGGTTTATCAAT+GGG + chr3_1:55767632-55767651 Msa0363400:CDS 50.0%
AGATCATCAACAGCCAACGG+AGG - chr3_1:55767735-55767754 None:intergenic 50.0%
!! ATGAGGAAGTTGAAGGCGTC+CGG + chr3_1:55767843-55767862 Msa0363400:CDS 50.0%
! ATTAGATGGGCAGCCTTGTG+CGG + chr3_1:55767905-55767924 Msa0363400:CDS 50.0%
! AGCCTTGTGCGGATCATGAT+AGG + chr3_1:55767916-55767935 Msa0363400:CDS 50.0%
GCCTTGTGCGGATCATGATA+GGG + chr3_1:55767917-55767936 Msa0363400:CDS 50.0%
! CATGATAGGGCTAGTGGTGA+AGG + chr3_1:55767930-55767949 Msa0363400:CDS 50.0%
! AATGCTTGGGTGTTGCCTGA+TGG + chr3_1:55768089-55768108 Msa0363400:CDS 50.0%
! ATGCTTGGGTGTTGCCTGAT+GGG + chr3_1:55768090-55768109 Msa0363400:CDS 50.0%
!! GTTTGTTGTAGCGCATAGGG+CGG + chr3_1:55768148-55768167 Msa0363400:CDS 50.0%
AGCAAACAAGTCGGTCTCTG+AGG - chr3_1:55768209-55768228 None:intergenic 50.0%
TTTGCTTGAGCTTACGGGTC+AGG + chr3_1:55768223-55768242 Msa0363400:CDS 50.0%
!! GATGGATAAAGGTACCGGAG+TGG + chr3_1:55768322-55768341 Msa0363400:CDS 50.0%
TGCAACGCCATGTAGTCATC+AGG - chr3_1:55768371-55768390 None:intergenic 50.0%
TGATGACTACATGGCGTTGC+AGG + chr3_1:55768370-55768389 Msa0363400:CDS 50.0%
! GCAGGATCTGAAGTCCAAAG+CGG + chr3_1:55768388-55768407 Msa0363400:CDS 50.0%
TGAAGTCCAAAGCGGCGTTT+AGG + chr3_1:55768396-55768415 Msa0363400:CDS 50.0%
GAAGTCCAAAGCGGCGTTTA+GGG + chr3_1:55768397-55768416 Msa0363400:CDS 50.0%
!! TAGGGCGAAGTTTGGTGTCA+AGG + chr3_1:55768415-55768434 Msa0363400:CDS 50.0%
GCGCACTTGTTTCCAAATGG+CGG - chr3_1:55768485-55768504 None:intergenic 50.0%
TGGAAACAAGTGCGCAGAGA+CGG + chr3_1:55768490-55768509 Msa0363400:CDS 50.0%
GAGGCAAACAGATCATGGAC+AGG - chr3_1:55770244-55770263 None:intergenic 50.0%
TACCGTTAACCAGTGCCTCA+AGG + chr3_1:55770467-55770486 Msa0363400:intron 50.0%
ACCGTTAACCAGTGCCTCAA+GGG + chr3_1:55770468-55770487 Msa0363400:intron 50.0%
TGTACAGTGAGCCAGAGAAG+AGG + chr3_1:55771012-55771031 Msa0363400:CDS 50.0%
GTACAGTGAGCCAGAGAAGA+GGG + chr3_1:55771013-55771032 Msa0363400:CDS 50.0%
CTAGACATCACCCTCTTCTC+TGG - chr3_1:55771026-55771045 None:intergenic 50.0%
GATACAGGCTCATGTTCGAC+AGG - chr3_1:55771136-55771155 None:intergenic 50.0%
GTCGCGTCTCATCATGATAC+AGG - chr3_1:55771151-55771170 None:intergenic 50.0%
!! CTTTGGGCTGGTTGAATCAG+TGG + chr3_1:55771186-55771205 Msa0363400:CDS 50.0%
! TGGGCTTGCTCACGTTCATT+TGG + chr3_1:55771206-55771225 Msa0363400:CDS 50.0%
GTCTTGGCACACGTATACCA+TGG + chr3_1:55771228-55771247 Msa0363400:CDS 50.0%
CCAGACACCCGAAGATCAAA+TGG - chr3_1:55771491-55771510 None:intergenic 50.0%
CCATTTGATCTTCGGGTGTC+TGG + chr3_1:55771488-55771507 Msa0363400:CDS 50.0%
GCTTGGGGAAAATTGCAGTG+TGG - chr3_1:55771556-55771575 None:intergenic 50.0%
! CAATTTTCCCCAAGCGTCAC+TGG + chr3_1:55771561-55771580 Msa0363400:CDS 50.0%
CCATTGCATCTAAACCCACG+AGG - chr3_1:55771587-55771606 None:intergenic 50.0%
CCTCGTGGGTTTAGATGCAA+TGG + chr3_1:55771584-55771603 Msa0363400:CDS 50.0%
TCTTTGGCTGATGCTGGTGA+TGG + chr3_1:55771707-55771726 Msa0363400:CDS 50.0%
CAGCAAATGCGGCAATTCTC+AGG + chr3_1:55771759-55771778 Msa0363400:CDS 50.0%
GGCTCACCAAAGAGCTTACA+TGG + chr3_1:55771780-55771799 Msa0363400:CDS 50.0%
CGATCAGCATAGATAGACGG+TGG - chr3_1:55771848-55771867 None:intergenic 50.0%
AGATTGTCATGTGGGGCTAG+TGG + chr3_1:55771989-55772008 Msa0363400:CDS 50.0%
!!! GATGGTTTTGTGGTGAAGGC+AGG + chr3_1:55772118-55772137 Msa0363400:CDS 50.0%
! GTTTTGTGGTGAAGGCAGGT+TGG + chr3_1:55772122-55772141 Msa0363400:CDS 50.0%
AAGGAAGAAGCGATGGACCT+CGG + chr3_1:55772505-55772524 Msa0363400:CDS 50.0%
!! GAAGGAGCAACTTGTTGGAC+AGG + chr3_1:55773021-55773040 Msa0363400:intron 50.0%
! GTGCCATTGGAGACATGTCA+TGG + chr3_1:55773142-55773161 Msa0363400:intron 50.0%
TAAAGGAACACAGAGTGCGG+GGG - chr3_1:55773193-55773212 None:intergenic 50.0%
CACTACACAGGTACACAGTG+CGG + chr3_1:55773467-55773486 Msa0363400:intron 50.0%
ACTACACAGGTACACAGTGC+GGG + chr3_1:55773468-55773487 Msa0363400:intron 50.0%
GCCCTCTGCTTCTCAGTTTA+TGG - chr3_1:55774048-55774067 None:intergenic 50.0%
AGCCACTCACCATGCAAAAC+AGG - chr3_1:55774307-55774326 None:intergenic 50.0%
GTGGGCAAGTTTGTCTCTGT+TGG + chr3_1:55774552-55774571 Msa0363400:three_prime_UTR 50.0%
CCCCATCGCATCTCACACAA+AGG + chr3_1:55766976-55766995 Msa0363400:CDS 55.0%
CTGAATCAAATTCGCGGCGG+CGG + chr3_1:55767105-55767124 Msa0363400:CDS 55.0%
GGCGGCGGTATAACAAGTAG+CGG + chr3_1:55767120-55767139 Msa0363400:CDS 55.0%
AAGTAGCGGCGAAATGGCGT+CGG + chr3_1:55767134-55767153 Msa0363400:CDS 55.0%
CGGGTGGGCAGGTTTATCAA+TGG + chr3_1:55767631-55767650 Msa0363400:CDS 55.0%
!! GAAGTTGAAGGCGTCCGGTA+AGG + chr3_1:55767848-55767867 Msa0363400:CDS 55.0%
GGCGTCCGGTAAGGTTGTTA+AGG + chr3_1:55767857-55767876 Msa0363400:CDS 55.0%
GCACAAGGCTGCCCATCTAA+TGG - chr3_1:55767906-55767925 None:intergenic 55.0%
GCCCTATCATGATCCGCACA+AGG - chr3_1:55767921-55767940 None:intergenic 55.0%
GCGGATCATGATAGGGCTAG+TGG + chr3_1:55767924-55767943 Msa0363400:CDS 55.0%
AGGAGAGTCACTAGGCACAC+TGG - chr3_1:55768351-55768370 None:intergenic 55.0%
CAGCAAAGACCCCATAGCCT+TGG - chr3_1:55769311-55769330 None:intergenic 55.0%
CAAGGCTATGGGGTCTTTGC+TGG + chr3_1:55769309-55769328 Msa0363400:intron 55.0%
!! GCCCTTGAGGCACTGGTTAA+CGG - chr3_1:55770472-55770491 None:intergenic 55.0%
!! AAAGAGTGCCCTTGAGGCAC+TGG - chr3_1:55770479-55770498 None:intergenic 55.0%
CGCTTCTCTTTGGCTGATGC+TGG + chr3_1:55771701-55771720 Msa0363400:CDS 55.0%
AGGAAGAAGCGATGGACCTC+GGG + chr3_1:55772506-55772525 Msa0363400:CDS 55.0%
AGAGACAATCCTCCATCCCC+TGG + chr3_1:55772697-55772716 Msa0363400:CDS 55.0%
AGACGGCAGTAGGACTTCCA+GGG - chr3_1:55772717-55772736 None:intergenic 55.0%
AAGACGGCAGTAGGACTTCC+AGG - chr3_1:55772718-55772737 None:intergenic 55.0%
ATGGGCAAGAAGACGGCAGT+AGG - chr3_1:55772727-55772746 None:intergenic 55.0%
CTACACAGGTACACAGTGCG+GGG + chr3_1:55773469-55773488 Msa0363400:intron 55.0%
TACACAGGTACACAGTGCGG+GGG + chr3_1:55773470-55773489 Msa0363400:three_prime_UTR 55.0%
GCGAAGACGATGAAACGCCG+CGG - chr3_1:55767370-55767389 None:intergenic 60.0%
GCGGCGTTTCATCGTCTTCG+CGG + chr3_1:55767369-55767388 Msa0363400:CDS 60.0%
TTCTTGCTGCGGCGACGTTG+AGG + chr3_1:55768042-55768061 Msa0363400:CDS 60.0%
AGGCACACTGGTCACCACTC+CGG - chr3_1:55768339-55768358 None:intergenic 60.0%
CTTCGCCCTAAACGCCGCTT+TGG - chr3_1:55768405-55768424 None:intergenic 60.0%
! GCGGCGTTTAGGGCGAAGTT+TGG + chr3_1:55768407-55768426 Msa0363400:CDS 60.0%
! GAAGGCAGGTTGGCCAACAG+CGG + chr3_1:55772132-55772151 Msa0363400:CDS 60.0%
!! AGGTCAGGAGCATCCGCTGT+TGG - chr3_1:55772148-55772167 None:intergenic 60.0%
GGAAGAAGCGATGGACCTCG+GGG + chr3_1:55772507-55772526 Msa0363400:CDS 60.0%
AATTCAGGGCTTGAGCCCCG+AGG - chr3_1:55772525-55772544 None:intergenic 60.0%
GTAGGACTTCCAGGGGATGG+AGG - chr3_1:55772709-55772728 None:intergenic 60.0%
GCAGTAGGACTTCCAGGGGA+TGG - chr3_1:55772712-55772731 None:intergenic 60.0%
GACGGCAGTAGGACTTCCAG+GGG - chr3_1:55772716-55772735 None:intergenic 60.0%
ACACAGGTACACAGTGCGGG+GGG + chr3_1:55773471-55773490 Msa0363400:three_prime_UTR 60.0%
TGCTGCGAAATCGGGTGGGC+AGG + chr3_1:55767620-55767639 Msa0363400:CDS 65.0%
GTGCGCAGAGACGGTTTGCC+TGG + chr3_1:55768499-55768518 Msa0363400:CDS 65.0%
CACGAGGCCAGTGACGCTTG+GGG - chr3_1:55771571-55771590 None:intergenic 65.0%
CCACGAGGCCAGTGACGCTT+GGG - chr3_1:55771572-55771591 None:intergenic 65.0%
! CCAAGCGTCACTGGCCTCGT+GGG + chr3_1:55771570-55771589 Msa0363400:CDS 65.0%
! CCCAAGCGTCACTGGCCTCG+TGG + chr3_1:55771569-55771588 Msa0363400:CDS 70.0%
CCCACGAGGCCAGTGACGCT+TGG - chr3_1:55771573-55771592 None:intergenic 70.0%
GTGCGGGGGCTGCAGTTGCA+TGG - chr3_1:55773179-55773198 None:intergenic 70.0%
TGCGGGGGGCTGCAGTTGCA+TGG + chr3_1:55773485-55773504 Msa0363400:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 55766887 55774822 55766887 ID=Msa0363400;Name=Msa0363400
chr3_1 mRNA 55766887 55774822 55766887 ID=Msa0363400-mRNA-1;Parent=Msa0363400;Name=Msa0363400-mRNA-1;_AED=0.02;_eAED=0.02;_QI=73|1|1|1|0.5|0.4|5|470|1130
chr3_1 exon 55766887 55766997 55766887 ID=Msa0363400-mRNA-1:exon:10192;Parent=Msa0363400-mRNA-1
chr3_1 exon 55767080 55768683 55767080 ID=Msa0363400-mRNA-1:exon:10193;Parent=Msa0363400-mRNA-1
chr3_1 exon 55771000 55772757 55771000 ID=Msa0363400-mRNA-1:exon:10194;Parent=Msa0363400-mRNA-1
chr3_1 exon 55773470 55773611 55773470 ID=Msa0363400-mRNA-1:exon:10195;Parent=Msa0363400-mRNA-1
chr3_1 exon 55774502 55774822 55774502 ID=Msa0363400-mRNA-1:exon:10196;Parent=Msa0363400-mRNA-1
chr3_1 five_prime_UTR 55766887 55766959 55766887 ID=Msa0363400-mRNA-1:five_prime_utr;Parent=Msa0363400-mRNA-1
chr3_1 CDS 55766960 55766997 55766960 ID=Msa0363400-mRNA-1:cds;Parent=Msa0363400-mRNA-1
chr3_1 CDS 55767080 55768683 55767080 ID=Msa0363400-mRNA-1:cds;Parent=Msa0363400-mRNA-1
chr3_1 CDS 55771000 55772750 55771000 ID=Msa0363400-mRNA-1:cds;Parent=Msa0363400-mRNA-1
chr3_1 three_prime_UTR 55772751 55772757 55772751 ID=Msa0363400-mRNA-1:three_prime_utr;Parent=Msa0363400-mRNA-1
chr3_1 three_prime_UTR 55773470 55773611 55773470 ID=Msa0363400-mRNA-1:three_prime_utr;Parent=Msa0363400-mRNA-1
chr3_1 three_prime_UTR 55774502 55774822 55774502 ID=Msa0363400-mRNA-1:three_prime_utr;Parent=Msa0363400-mRNA-1
Gene Sequence

>Msa0363400

ATGTTCATTTCCAAAACCCCATCGCATCTCACACAAAGGTGTAAAAGATTTCTAGCTTCAACACTGAATCAAATTCGCGGCGGCGGTATAACAAGTAGCGGCGAAATGGCGTCGGAAACTTCAAGAAGCTTCGTTCGTCGCGATCGTCTTCGCGAAATCGAATCAAAAGTTCAAAAATGGTGGGAAGAGAAACAAGTCTTCAAATCTGAACCGGGTAACAAACCGCCTCAAGAAGGTGAAAAATTCTTCGGGAATTTCCCTTTTCCTTATATGAACGGTTACTTACATCTAGGTCATGCTTTTTCGCTTTCGAAGCTTGAATTCGCCGCGGCGTTTCATCGTCTTCGCGGCGCGAATGTTCTTTTGCCTTTTGCTTTTCATTGTACTGGTATGCCTATTAAGGCTTCTGCTGATAAGCTTGCTAGGGAGATTCAACAGTTTGGTAATCCTCCGGTTTTTCCCGAGGAAATCGAGGAATTAGAGAATTTAACTGTTGTTGATAAGGATAAGAATGCTGGTGGAAATGATGAAAATGAAAATGCTGTTGCTGGGAAATTTAAAGGGAAGAAATCGAAAGTTGCTGCGAAATCGGGTGGGCAGGTTTATCAATGGGAGATTATGAGGAGTGTTGGTATTTCTGATGCTGAGATTTCGGAGTTTCAAGATCCTTACAAGTGGTTGTCTTATTTTCCTCCGTTGGCTGTTGATGATCTTAAGGCTTTTGGGTTTGGTTGTGATTGGAGAAGGTCGTTCATTACGACCGATATGAATCCTTATTTTGATGCTTTTGTTAGGTGGCATATGAGGAAGTTGAAGGCGTCCGGTAAGGTTGTTAAGGATGTTAGGTATACTGTTTTTTCGCCATTAGATGGGCAGCCTTGTGCGGATCATGATAGGGCTAGTGGTGAAGGTGTTCAGCCGCAAGAGTATACGATTATTAAGATGGAGGTGGTTTCGCCTTTTCCTGAGAAGTTTAAGGTTTTGGAGGGAAAGAAGGTTTTTCTTGCTGCGGCGACGTTGAGGCCTGAGACTATGTATGGTCAAACAAATGCTTGGGTGTTGCCTGATGGGAAATATGGGGCTTTTGAGATTAATGAAACGGAGGTGTTTGTTGTAGCGCATAGGGCGGCGCTTAATCTTGCTTACCAAAATCACTCTAGGGTACCTCAGAGACCGACTTGTTTGCTTGAGCTTACGGGTCAGGATTTGATCGGGATTCCTGTGAAATCTCCTCTTTCCTTGAATGAGATTATATATGTGCTTCCTATGTTGTCTATTTTGATGGATAAAGGTACCGGAGTGGTGACCAGTGTGCCTAGTGACTCTCCTGATGACTACATGGCGTTGCAGGATCTGAAGTCCAAAGCGGCGTTTAGGGCGAAGTTTGGTGTCAAGGATGAATGGGTGTTGCCATTTGAGGTTTTGCCTATCATTGAAGTTCCGCCATTTGGAAACAAGTGCGCAGAGACGGTTTGCCTGGAGATGAAAATCAAATCTCAGAATGAGAAAGACAAGCTTGCTGAAGCCAAGAAACAAACATACTTGAAAGGATTCACTGACGGAACTATGATTGTCGGAGAATTTAAAGATAAGAAAGTTCAGGAAGCTAAGCCCTTGATTAGGAGCAAGCTTTTGGAAACAGGTGAGGCAATTGTGTACAGTGAGCCAGAGAAGAGGGTGATGTCTAGATCTGGTGATGAATGTGTTGTAGCTCTGACAGATCAGTGGTACATTACATATGGGGAGTCAGAATGGAAGCAGTTAACTGATGAATGCCTGTCGAACATGAGCCTGTATCATGATGAGACGCGACATGGTTTTGAGCATACTTTGGGCTGGTTGAATCAGTGGGCTTGCTCACGTTCATTTGGTCTTGGCACACGTATACCATGGGATGAACAGTTCCTAGTCGAGTCTCTATCGGATTCGACCATTTACATGGCTTATTACACTATTGCGCACTATTTGCAGAACAATGACATGTATGGAACTAGTGAATCATCTATCAAACCTCAGCAACTGACTGATGATGTCTGGGATTATATTTTCTGTGGTGGACCTTTCCCTAAGTCCACTGATATTTCATCATCCGTTTTAGAAAAAATGAAGCTTGAGTTTGAGTACTGGTATCCATTTGATCTTCGGGTGTCTGGTAAAGATCTCATCCAAAATCATCTTACCTTTTGCCTTTACAACCACACTGCAATTTTCCCCAAGCGTCACTGGCCTCGTGGGTTTAGATGCAATGGCCACTTAATGCTCAATTCTGAGAAAATGTCCAAGTCTACTGGAAATTTCAGAACTATTCGTCAGGCAATTGAGGAATTTTCTGCTGATGCTACACGCTTCTCTTTGGCTGATGCTGGTGATGGTGTTGATGATGCCAATTTTGTGTTTGAGACAGCAAATGCGGCAATTCTCAGGCTCACCAAAGAGCTTACATGGTTTGAAGAGACTCTGGATGCAGAATCTTCTATGAGAACTGGTCCACCGTCTATCTATGCTGATCGTGTGTTTGCCAATGAAATTAACATTGCCGTCAAAACAACTGAGCAAAATTACTACAACTATATGTTTCGAGAAGCCCTAAAGACTGGCTTTTATGATCTTCAGGCTGCTAGGGATGAGTATAGATTGTCATGTGGGGCTAGTGGTTTCAATCGTGATTTGGTGCGGCGTTTTATGGATGTGCAGACACGTCTTCTAGCACCTATCTGTCCGCATTATGCAGAGTTTATTTGGAGAGAGATTTTGAAGAAGGATGGTTTTGTGGTGAAGGCAGGTTGGCCAACAGCGGATGCTCCTGACCTTACACTAAAGAGTGCCAACAAATATCTACAGGATTCTATTGTTCTGATAAGGAAGTTGCTTCAGAAGCAACTTTCAGGCTCAAAGAAAGGAAATAAGAAAGGCGCTCCTGTTGTAGTGCCAACAGAAATCAAGTTCACTTGCTTGGTATATGTGAATGAACAATTTGACGGTTGGAAAGCTGAGTGCCTTAACATTCTCCAGAACAGCTTTAACGAAGATTCTCGAACTTTTGCTCCGGAATCAGAAATTATGGCGGCTTTACAACAGAGTTCTGTAGGTCAATCTTCTGATTTTAAACGAACTCAAAAGTTATGTATGCCTTTCTTAAGGTATAAGAAGGAAGAAGCGATGGACCTCGGGGCTCAAGCCCTGAATTTGAGACTGCCGTTTGGTGAAATTGAGGTTCTTCGGGAAAACTTGGACTCGATCAAGAGACAGATAGGTTCAAAAGAGGTTGTAGATGTGGAAATTTTATCTGCAGCTGATGCTGATTCTTTGGCTAAAGCTGGATCTCATGCATCTCTACTAAGAGACAATCCTCCATCCCCTGGAAGTCCTACTGCCGTCTTCTTGCCCATGTAG
Protein sequence

>Msa0363400

MFISKTPSHLTQRCKRFLASTLNQIRGGGITSSGEMASETSRSFVRRDRLREIESKVQKWWEEKQVFKSEPGNKPPQEGEKFFGNFPFPYMNGYLHLGHAFSLSKLEFAAAFHRLRGANVLLPFAFHCTGMPIKASADKLAREIQQFGNPPVFPEEIEELENLTVVDKDKNAGGNDENENAVAGKFKGKKSKVAAKSGGQVYQWEIMRSVGISDAEISEFQDPYKWLSYFPPLAVDDLKAFGFGCDWRRSFITTDMNPYFDAFVRWHMRKLKASGKVVKDVRYTVFSPLDGQPCADHDRASGEGVQPQEYTIIKMEVVSPFPEKFKVLEGKKVFLAAATLRPETMYGQTNAWVLPDGKYGAFEINETEVFVVAHRAALNLAYQNHSRVPQRPTCLLELTGQDLIGIPVKSPLSLNEIIYVLPMLSILMDKGTGVVTSVPSDSPDDYMALQDLKSKAAFRAKFGVKDEWVLPFEVLPIIEVPPFGNKCAETVCLEMKIKSQNEKDKLAEAKKQTYLKGFTDGTMIVGEFKDKKVQEAKPLIRSKLLETGEAIVYSEPEKRVMSRSGDECVVALTDQWYITYGESEWKQLTDECLSNMSLYHDETRHGFEHTLGWLNQWACSRSFGLGTRIPWDEQFLVESLSDSTIYMAYYTIAHYLQNNDMYGTSESSIKPQQLTDDVWDYIFCGGPFPKSTDISSSVLEKMKLEFEYWYPFDLRVSGKDLIQNHLTFCLYNHTAIFPKRHWPRGFRCNGHLMLNSEKMSKSTGNFRTIRQAIEEFSADATRFSLADAGDGVDDANFVFETANAAILRLTKELTWFEETLDAESSMRTGPPSIYADRVFANEINIAVKTTEQNYYNYMFREALKTGFYDLQAARDEYRLSCGASGFNRDLVRRFMDVQTRLLAPICPHYAEFIWREILKKDGFVVKAGWPTADAPDLTLKSANKYLQDSIVLIRKLLQKQLSGSKKGNKKGAPVVVPTEIKFTCLVYVNEQFDGWKAECLNILQNSFNEDSRTFAPESEIMAALQQSSVGQSSDFKRTQKLCMPFLRYKKEEAMDLGAQALNLRLPFGEIEVLRENLDSIKRQIGSKEVVDVEILSAADADSLAKAGSHASLLRDNPPSPGSPTAVFLPM*