AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0307860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0307860 MtrunA17_Chr2g0277001 93.944 677 28 4 1 672 1 669 0.0 1239
Msa0307860 MtrunA17_Chr7g0275381 92.593 675 43 6 1 672 1 671 0.0 1220
Msa0307860 MtrunA17_Chr1g0155771 94.056 673 35 4 1 672 1 669 0.0 1214
Msa0307860 MtrunA17_Chr6g0468211 59.903 414 77 7 261 672 62 388 7.11e-143 429
Msa0307860 MtrunA17_Chr2g0316781 51.852 405 49 7 166 569 12 271 2.92e-116 349
Msa0307860 MtrunA17_Chr6g0468421 57.752 258 41 3 324 581 1 190 4.29e-85 265
Msa0307860 MtrunA17_Chr6g0468011 60.606 198 47 4 261 456 12 180 5.42e-66 215
Msa0307860 MtrunA17_Chr2g0303811 83.019 106 18 0 567 672 1 106 4.61e-56 187
Msa0307860 MtrunA17_Chr6g0468411 76.471 119 24 1 558 672 5 123 1.27e-54 184
Msa0307860 MtrunA17_Chr6g0467941 48.438 128 14 2 545 672 1 76 7.53e-27 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0307860 AT3G56150.2 67.799 677 185 5 1 672 1 649 0.0 872
Msa0307860 AT3G56150.1 67.799 677 185 5 1 672 1 649 0.0 872
Msa0307860 AT3G22860.1 64.679 436 137 4 245 672 181 607 0.0 560

Find 274 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATGTTTGTTCTGATTTA+TGG 0.039660 2_4:+999621 Msa0307860:three_prime_UTR
TCTGGTTGTTATGAGAATTT+AGG 0.156316 2_4:-995552 None:intergenic
CAAGAAGTTCAAAGAGATTC+TGG 0.204715 2_4:+996500 Msa0307860:CDS
GATTTCAGATGAAATTTCTT+TGG 0.216565 2_4:+999561 Msa0307860:three_prime_UTR
GCACTGTAAGCCAGAGATTT+TGG 0.217294 2_4:+999753 Msa0307860:three_prime_UTR
GCTGGGACTCATCTTCTTCT+TGG 0.219134 2_4:-996136 None:intergenic
TGTAAAGATTAGGGATCTTT+TGG 0.232109 2_4:-996056 None:intergenic
ACATGATCCCTGACAGTTTC+AGG 0.235192 2_4:-998712 None:intergenic
TGTTTGTCTGAACTTTATTC+TGG 0.235265 2_4:+997473 Msa0307860:CDS
CAATAATGTCAAAGGCCTTC+TGG 0.238181 2_4:-998771 None:intergenic
GGTTTCCGCGCCACAAGTTC+CGG 0.248793 2_4:-997173 None:intergenic
GCCACAAGGGTTCTTATTAA+TGG 0.250263 2_4:+998742 Msa0307860:three_prime_UTR
AACCAATGGCTTCGAGATTC+TGG 0.262577 2_4:+995578 Msa0307860:exon
TGCTCAGGCTTCTGCTAATA+AGG 0.263529 2_4:+996110 Msa0307860:CDS
CTGGTTGTTATGAGAATTTA+GGG 0.266616 2_4:-995551 None:intergenic
GGAAAATAGCAGGACCTTAA+TGG 0.268698 2_4:+997205 Msa0307860:CDS
GTTGAAGGCTTTGGCATTGC+TGG 0.280294 2_4:-996154 None:intergenic
GAATCATCAACCTTTATGTT+TGG 0.286060 2_4:-996744 None:intergenic
TTTGGTTTGTAGGTATCTAT+TGG 0.296703 2_4:-995836 None:intergenic
CAACAACGGGTTTGGTTTGT+AGG 0.300152 2_4:-995846 None:intergenic
TATGCACTTAATCTAGATTC+TGG 0.301092 2_4:+999539 Msa0307860:three_prime_UTR
TCCAGTTCCCTTCCTGCCCC+TGG 0.302069 2_4:-996526 None:intergenic
ATCATATGATTCTTTCAGTT+TGG 0.303868 2_4:+998902 Msa0307860:three_prime_UTR
CTTCATTGAGTTGAAGGCTT+TGG 0.318286 2_4:-996163 None:intergenic
CAGATTTAACAACACGCTTT+TGG 0.326666 2_4:-995891 None:intergenic
TTATGAAGCAACGAGAAAAT+TGG 0.328433 2_4:+997058 Msa0307860:CDS
GAGATGAGTGAGGAGTTAAA+AGG 0.329554 2_4:+997110 Msa0307860:CDS
GGAGGCGGCTATCAGAATTC+AGG 0.346447 2_4:+999371 Msa0307860:three_prime_UTR
AATCATCAACCTTTATGTTT+GGG 0.349179 2_4:-996743 None:intergenic
GATTATGCCGCTGCAGCTGC+TGG 0.352272 2_4:+999191 Msa0307860:three_prime_UTR
CCGGGATTTAGTACCTGTTC+TGG 0.353112 2_4:-997557 None:intergenic
TCTATTGGCTGTATTGTTGT+TGG 0.355511 2_4:-995821 None:intergenic
GGTGGTAGTGGAACGTCTTC+AGG 0.355830 2_4:+999215 Msa0307860:three_prime_UTR
TAGCAAGAAAGACAGGCTTT+TGG 0.359604 2_4:+996428 Msa0307860:CDS
TACCCGCATGGTTAGCCTTA+GGG 0.360330 2_4:+999442 Msa0307860:three_prime_UTR
ACTCTCAAGGGTGCAGGCTT+TGG 0.361470 2_4:+999055 Msa0307860:three_prime_UTR
ATTTCAGATGAAATTTCTTT+GGG 0.372007 2_4:+999562 Msa0307860:three_prime_UTR
ATGATGAAGAGAAGGTAAAT+AGG 0.373547 2_4:-998884 None:intergenic
CAATGCTTTCAAGATATTCC+TGG 0.380146 2_4:-996965 None:intergenic
AGATTTATATGCATATGATA+TGG 0.383704 2_4:-998537 None:intergenic
ATGACCGTAGAGGGAGATAA+TGG 0.387791 2_4:+997086 Msa0307860:CDS
GGCGCGGAAACCCACCTTCC+CGG 0.387923 2_4:+997184 Msa0307860:CDS
GCAAGCTGGGATCAGCCAAC+TGG 0.390557 2_4:+999008 Msa0307860:three_prime_UTR
TCCGGCTTCCTGAGCTGATC+AGG 0.393176 2_4:-996321 None:intergenic
AGATTTCAAAGCTTCTTCTA+AGG 0.393340 2_4:+996989 Msa0307860:CDS
AATTTCCGCCGCTTCCTTTG+AGG 0.393752 2_4:+998660 Msa0307860:CDS
CTATTGGCTGTATTGTTGTT+GGG 0.393873 2_4:-995820 None:intergenic
GCCTTGCCTTGTTTGAGAAT+AGG 0.394600 2_4:-999258 None:intergenic
CTACCCGCATGGTTAGCCTT+AGG 0.397357 2_4:+999441 Msa0307860:three_prime_UTR
GCCAGGGGCAGGAAGGGAAC+TGG 0.399839 2_4:+996525 Msa0307860:CDS
TGATGATGGCGATGCTCCTT+GGG 0.400541 2_4:+996395 Msa0307860:CDS
GCTCAGTTTGATGTTAATCC+AGG 0.401276 2_4:+996639 Msa0307860:CDS
TCGAAGCCATTGGTTTAGTC+TGG 0.401988 2_4:-995570 None:intergenic
AGAGCCTTGATGTAAAGATT+AGG 0.402756 2_4:-996066 None:intergenic
GTGATGATGGCGATGCTCCT+TGG 0.404468 2_4:+996394 Msa0307860:CDS
GCTTGAAGATTTCCTTGCTC+AGG 0.408980 2_4:+996095 Msa0307860:CDS
CCGGTCCTCCTGAAACTGTC+AGG 0.411793 2_4:+998704 Msa0307860:three_prime_UTR
ATGTAAGATGCACTGATTCC+AGG 0.412950 2_4:-998566 None:intergenic
GAGCCTTGATGTAAAGATTA+GGG 0.415850 2_4:-996065 None:intergenic
ATGACGGACCCATTCATGTC+TGG 0.416244 2_4:+996808 Msa0307860:CDS
GCCGCTGCAGCTGCTGGTGG+TGG 0.418701 2_4:+999197 Msa0307860:three_prime_UTR
GTTTCCGCGCCACAAGTTCC+GGG 0.419096 2_4:-997172 None:intergenic
TTAAGTGCATAATAATAAAC+TGG 0.419627 2_4:-999527 None:intergenic
TAGATAATTTCTCAGTCAAC+TGG 0.421894 2_4:-999082 None:intergenic
TGATACTAACACATCCATTA+AGG 0.425287 2_4:-997219 None:intergenic
GCAGCTGCTGGTGGTGGTAG+TGG 0.425549 2_4:+999203 Msa0307860:three_prime_UTR
AATGAGTTCAACCCTCTTCA+AGG 0.428889 2_4:-997015 None:intergenic
ACTGTCATCAACAACGGGTT+TGG 0.429963 2_4:-995854 None:intergenic
AACAGGGCTATGTCACAGTT+AGG 0.435704 2_4:+997407 Msa0307860:CDS
TTGAAGGCTTTGGCATTGCT+GGG 0.436119 2_4:-996153 None:intergenic
GAAACTTGTGCCAAAATCTC+TGG 0.436609 2_4:-999763 None:intergenic
CGTGCAGCACCCAAACATAA+AGG 0.438376 2_4:+996734 Msa0307860:CDS
TGCCCATCTCTTCGCCTTGG+AGG 0.438441 2_4:-999167 None:intergenic
TCAAAGAGATTCTGGAAGCC+AGG 0.439840 2_4:+996508 Msa0307860:CDS
GCATATAAATCTTGAGCTCC+TGG 0.445116 2_4:+998548 Msa0307860:CDS
GGCATATGCCCACTGAGGCC+TGG 0.449256 2_4:-996657 None:intergenic
ATGAGGAGCTTCATGCAAGC+TGG 0.457408 2_4:+998994 Msa0307860:three_prime_UTR
TTCAGTCAAGCTGGTGGGAG+TGG 0.458684 2_4:+999320 Msa0307860:three_prime_UTR
CAGAACAAACATTGGGAGCT+GGG 0.459982 2_4:-999613 None:intergenic
ATGAGAATGAAACTAAGAAA+GGG 0.464510 2_4:+996778 Msa0307860:CDS
TCAGAATCCGACACGGGCTC+CGG 0.466090 2_4:-996339 None:intergenic
AATTATCTTTCAGGAAAGGT+TGG 0.471050 2_4:+998497 Msa0307860:intron
TCAGAAATGTTGAACTCTCA+AGG 0.471342 2_4:+999042 Msa0307860:three_prime_UTR
TCCTGCCCATCTCTTCGCCT+TGG 0.472750 2_4:-999170 None:intergenic
TCTAGAGGACGGGGAACGAT+TGG 0.474394 2_4:+999350 Msa0307860:three_prime_UTR
AACTGTCAGGGATCATGTTA+TGG 0.475362 2_4:+998717 Msa0307860:three_prime_UTR
TCTTACATCTGCTATGCTGC+TGG 0.477105 2_4:+998581 Msa0307860:CDS
TGAACATTGGCTGCCATGTT+GGG 0.479489 2_4:-998609 None:intergenic
TAATAAACTGGTAAAAGAAA+AGG 0.479905 2_4:-999515 None:intergenic
AGCTGCAGTTTCTTCTTCAT+CGG 0.482972 2_4:+995495 Msa0307860:five_prime_UTR
AATCAATATACGAAAATTCA+CGG 0.484012 2_4:-995443 None:intergenic
GGGAACTGGAAGGTTTGAAC+AGG 0.485450 2_4:+996539 Msa0307860:CDS
GATTCTGAAACTTCTGAGCT+TGG 0.486351 2_4:+996354 Msa0307860:CDS
TTGTTGGGTTCATCATCAAC+GGG 0.486651 2_4:-995805 None:intergenic
TAAGTTGCCCCAGACATGAA+TGG 0.490965 2_4:-996817 None:intergenic
TCATGAAAAGACTCCAGAAC+AGG 0.493182 2_4:+997544 Msa0307860:CDS
GTGAATATGTTGAGAGACTC+AGG 0.493281 2_4:+996907 Msa0307860:CDS
CAGAATTCAGGGAGGACTCA+AGG 0.493339 2_4:+999383 Msa0307860:three_prime_UTR
GAAGCAAGGTTAGGCGGCGG+TGG 0.493372 2_4:+999134 Msa0307860:three_prime_UTR
GTTGTTGGGTTCATCATCAA+CGG 0.494263 2_4:-995806 None:intergenic
TCGTCACTGTCATCAACAAC+GGG 0.495380 2_4:-995859 None:intergenic
TGACATTATTGCATCTCTTG+AGG 0.496021 2_4:+998783 Msa0307860:three_prime_UTR
TCAGAACAAACATTGGGAGC+TGG 0.496440 2_4:-999614 None:intergenic
CATTGGGAGCTGGGAGAGGA+GGG 0.496780 2_4:-999604 None:intergenic
TGACGGACCCATTCATGTCT+GGG 0.497542 2_4:+996809 Msa0307860:CDS
GGAAAAGGATGACGAGGATG+AGG 0.497694 2_4:+996260 Msa0307860:CDS
CTTGGTAATGACAGGCCTCC+TGG 0.498069 2_4:+996372 Msa0307860:CDS
CAGGAATATCTTGAAAGCAT+TGG 0.498525 2_4:+996966 Msa0307860:CDS
TTATTCTGGTGGACGGGTGA+AGG 0.499453 2_4:+997487 Msa0307860:CDS
AAATCAAGGAGGAGGCGCTT+AGG 0.499787 2_4:+998856 Msa0307860:three_prime_UTR
CATAAATCAGAACAAACATT+GGG 0.500452 2_4:-999620 None:intergenic
ATGAACATTGGCTGCCATGT+TGG 0.505127 2_4:-998610 None:intergenic
CTGGAAGCCAGGGGCAGGAA+GGG 0.505830 2_4:+996519 Msa0307860:CDS
TCAACGGGTTCAGTATCGTT+AGG 0.505992 2_4:-995790 None:intergenic
ACATTGGGAGCTGGGAGAGG+AGG 0.506596 2_4:-999605 None:intergenic
ATGTTAATCCAGGCCTCAGT+GGG 0.508312 2_4:+996649 Msa0307860:CDS
ACCCGCATGGTTAGCCTTAG+GGG 0.508509 2_4:+999443 Msa0307860:three_prime_UTR
CAGAAATGTTGAACTCTCAA+GGG 0.508616 2_4:+999043 Msa0307860:three_prime_UTR
AGATTCTGGAAGCCAGGGGC+AGG 0.509743 2_4:+996514 Msa0307860:CDS
AGAATTCAGGGAGGACTCAA+GGG 0.510031 2_4:+999384 Msa0307860:three_prime_UTR
AGAATCTGCAGCTTCTGAGC+AGG 0.511073 2_4:-996600 None:intergenic
ATCCTTCAGCATTTCTAGCA+CGG 0.511752 2_4:-998832 None:intergenic
AAGTTGCCCCAGACATGAAT+GGG 0.512091 2_4:-996816 None:intergenic
GGCAGTGGACGTACAGGATA+CGG 0.514533 2_4:+999278 Msa0307860:three_prime_UTR
GATGAGAATGAAACTAAGAA+AGG 0.515170 2_4:+996777 Msa0307860:CDS
TCCAAGGCGAAGAGATGGGC+AGG 0.515359 2_4:+999169 Msa0307860:three_prime_UTR
AAGGTTAGGCGGCGGTGGGT+TGG 0.516660 2_4:+999139 Msa0307860:three_prime_UTR
ACCTGATCAGCTCAGGAAGC+CGG 0.516893 2_4:+996320 Msa0307860:CDS
TCATTGAACCTGATCAGCTC+AGG 0.519230 2_4:+996313 Msa0307860:CDS
TGCTCCGTTTGTTGTTACCC+CGG 0.519622 2_4:+997154 Msa0307860:CDS
GATCCCTAATCTTTACATCA+AGG 0.521376 2_4:+996062 Msa0307860:CDS
TGGCGGCTATTCTAGAGGAC+GGG 0.522471 2_4:+999340 Msa0307860:three_prime_UTR
AGGACTTGATTATCAAATGT+AGG 0.523141 2_4:+996217 Msa0307860:CDS
TGTTGAACTCTCAAGGGTGC+AGG 0.524552 2_4:+999049 Msa0307860:three_prime_UTR
GAGGCGGCTATCAGAATTCA+GGG 0.525246 2_4:+999372 Msa0307860:three_prime_UTR
CTCAACATATTCACGTGTGT+GGG 0.525787 2_4:-996898 None:intergenic
GTGGGTTGGATCTGCCTCCA+AGG 0.528953 2_4:+999153 Msa0307860:three_prime_UTR
TCCCCTAAGGCTAACCATGC+GGG 0.529790 2_4:-999444 None:intergenic
TGTTCTTGCACAGAATGTCC+AGG 0.530188 2_4:+996947 Msa0307860:CDS
CTGAACTTTATTCTGGTGGA+CGG 0.530497 2_4:+997480 Msa0307860:CDS
AAAAGCTTAGCAAGAAAGAC+AGG 0.531266 2_4:+996421 Msa0307860:CDS
CTCTCCATTATCTCCCTCTA+CGG 0.531803 2_4:-997090 None:intergenic
GTCCAGAATCTCGAAGCCAT+TGG 0.533546 2_4:-995580 None:intergenic
GGGCTGGTTTCTGAAGCGCA+TGG 0.535363 2_4:+997449 Msa0307860:CDS
CCACCTTCCCGGAAAATAGC+AGG 0.535658 2_4:+997195 Msa0307860:CDS
GACTCATAAGCAACAGATCA+CGG 0.536368 2_4:-997334 None:intergenic
AGAGGACGGGGAACGATTGG+AGG 0.536414 2_4:+999353 Msa0307860:three_prime_UTR
GACAGGCCTCCTGGTGATGA+TGG 0.536973 2_4:+996381 Msa0307860:CDS
ATGCTATCAAGATCAATGAC+TGG 0.537887 2_4:+995965 Msa0307860:CDS
TGTTGTTACCCCGGAACTTG+TGG 0.539965 2_4:+997163 Msa0307860:CDS
CTGCCTCCAAGGCGAAGAGA+TGG 0.540348 2_4:+999164 Msa0307860:three_prime_UTR
CAAACATTGGGAGCTGGGAG+AGG 0.541139 2_4:-999608 None:intergenic
TTGTCTGAACTTTATTCTGG+TGG 0.542410 2_4:+997476 Msa0307860:CDS
AGGCAAGGCAGTGGACGTAC+AGG 0.542622 2_4:+999272 Msa0307860:three_prime_UTR
CAAGCTGGGATCAGCCAACT+GGG 0.543584 2_4:+999009 Msa0307860:three_prime_UTR
GTGGAACGTCTTCAGGTGGC+AGG 0.543676 2_4:+999222 Msa0307860:three_prime_UTR
AGTTCCGGGGTAACAACAAA+CGG 0.544060 2_4:-997158 None:intergenic
TGAGGAGCTTCATGCAAGCT+GGG 0.544437 2_4:+998995 Msa0307860:three_prime_UTR
TAGGGAGAGTCCTGAGAGTG+AGG 0.545078 2_4:+996236 Msa0307860:CDS
AATGCTGAAGGATAAAATCA+AGG 0.545420 2_4:+998842 Msa0307860:three_prime_UTR
TATGCCGCTGCAGCTGCTGG+TGG 0.547820 2_4:+999194 Msa0307860:three_prime_UTR
GGACTTGATTATCAAATGTA+GGG 0.548379 2_4:+996218 Msa0307860:CDS
TCCTATTCTCAAACAAGGCA+AGG 0.549766 2_4:+999257 Msa0307860:three_prime_UTR
CTTCTGAGCTTGGTAATGAC+AGG 0.550457 2_4:+996364 Msa0307860:CDS
CATAAAGGTTGATGATTCTG+TGG 0.552363 2_4:+996749 Msa0307860:CDS
CCATAAATCAGAACAAACAT+TGG 0.552425 2_4:-999621 None:intergenic
AGAATCATATGATGAAGAGA+AGG 0.556503 2_4:-998892 None:intergenic
CCTGACAGTTTCAGGAGGAC+CGG 0.559804 2_4:-998704 None:intergenic
CTTCTAAGGTAGCCTTGAAG+AGG 0.561694 2_4:+997003 Msa0307860:CDS
TCTCAAACAAGGCAAGGCAG+TGG 0.563066 2_4:+999263 Msa0307860:three_prime_UTR
CAAAGAGATTCTGGAAGCCA+GGG 0.563451 2_4:+996509 Msa0307860:CDS
GGGGTAACAACAAACGGAGC+AGG 0.564444 2_4:-997152 None:intergenic
TCTGGAAGCCAGGGGCAGGA+AGG 0.564829 2_4:+996518 Msa0307860:CDS
AAGAGATGCAATAATGTCAA+AGG 0.567228 2_4:-998779 None:intergenic
GCATTATCGTTCAGTCAAGC+TGG 0.568957 2_4:+999311 Msa0307860:three_prime_UTR
GTGTCCCATGTGATCTCACT+AGG 0.569429 2_4:-996471 None:intergenic
GGACGGGGAACGATTGGAGG+CGG 0.571631 2_4:+999356 Msa0307860:three_prime_UTR
GGAGCATCGCCATCATCACC+AGG 0.573601 2_4:-996390 None:intergenic
TGCCTCCAAGGCGAAGAGAT+GGG 0.574902 2_4:+999165 Msa0307860:three_prime_UTR
ACGCTTAGCATCATGAACAT+TGG 0.575475 2_4:-998622 None:intergenic
ATCATGTTATGGCTGCCACA+AGG 0.575690 2_4:+998728 Msa0307860:three_prime_UTR
GGGAGAGTCCTGAGAGTGAG+GGG 0.577170 2_4:+996238 Msa0307860:CDS
GTATCACTGATATACAAATA+CGG 0.579558 2_4:+997236 Msa0307860:CDS
TTATTGCATCTCTTGAGGTG+TGG 0.579762 2_4:+998788 Msa0307860:three_prime_UTR
TCTCAACATATTCACGTGTG+TGG 0.579942 2_4:-996899 None:intergenic
TGAACTTTATTCTGGTGGAC+GGG 0.580196 2_4:+997481 Msa0307860:CDS
AGTGAGAAACAAACATTCAC+CGG 0.580815 2_4:+998685 Msa0307860:three_prime_UTR
CTGAAAATAATGCACCCAGT+TGG 0.581929 2_4:-999023 None:intergenic
CGGTCCTCCTGAAACTGTCA+GGG 0.584556 2_4:+998705 Msa0307860:three_prime_UTR
AAAAGCCTAGTGAGATCACA+TGG 0.585381 2_4:+996466 Msa0307860:CDS
AGGTTCAATGATCTCATCAT+CGG 0.587424 2_4:-996301 None:intergenic
GTTGCTTCATAAACCTCATG+CGG 0.588345 2_4:-997047 None:intergenic
GCTACAGAAGCAAGGTTAGG+CGG 0.590150 2_4:+999128 Msa0307860:three_prime_UTR
TGAGAATGAAACTAAGAAAG+GGG 0.591503 2_4:+996779 Msa0307860:CDS
GTCAAGCACGAACTCCCCTA+AGG 0.592556 2_4:-999457 None:intergenic
GGTTCATCATCAATATCAGT+GGG 0.592619 2_4:-995769 None:intergenic
ACCACCACCAGCAGCTGCAG+CGG 0.592682 2_4:-999198 None:intergenic
AGGTTCATCATCAATATCAG+TGG 0.593036 2_4:-995770 None:intergenic
TTCTAAGGTAGCCTTGAAGA+GGG 0.593307 2_4:+997004 Msa0307860:CDS
AGAGCTACAGAAGCAAGGTT+AGG 0.594295 2_4:+999125 Msa0307860:three_prime_UTR
GTGAAGGAATTGCTTGCGCA+AGG 0.594439 2_4:+997503 Msa0307860:CDS
ACTCATAAGCAACAGATCAC+GGG 0.595404 2_4:-997333 None:intergenic
AGATAATGGAGAGATGAGTG+AGG 0.595500 2_4:+997100 Msa0307860:CDS
AAGCAAGGTTAGGCGGCGGT+GGG 0.595912 2_4:+999135 Msa0307860:three_prime_UTR
CATTTACTACAAACCGCATG+AGG 0.596878 2_4:+997034 Msa0307860:CDS
TGCTATCAAGATCAATGACT+GGG 0.597590 2_4:+995966 Msa0307860:CDS
AGGAAAGGTTGGAAAGAAGA+CGG 0.598493 2_4:+998508 Msa0307860:intron
GGGAGTGGCGGCTATTCTAG+AGG 0.598572 2_4:+999335 Msa0307860:three_prime_UTR
TTTCCGCGCCACAAGTTCCG+GGG 0.599206 2_4:-997171 None:intergenic
AGGGAGAGTCCTGAGAGTGA+GGG 0.600175 2_4:+996237 Msa0307860:CDS
TTGTTTCTCACTGACCTCAA+AGG 0.601441 2_4:-998674 None:intergenic
TTGGCTGAGATGACCGTAGA+GGG 0.603596 2_4:+997077 Msa0307860:CDS
ATGAAAGAGCTACAGAAGCA+AGG 0.604351 2_4:+999120 Msa0307860:three_prime_UTR
AGTCAAGCTGGTGGGAGTGG+CGG 0.604909 2_4:+999323 Msa0307860:three_prime_UTR
GAAGGATAAAATCAAGGAGG+AGG 0.606776 2_4:+998848 Msa0307860:three_prime_UTR
GTGGCGGCTATTCTAGAGGA+CGG 0.606807 2_4:+999339 Msa0307860:three_prime_UTR
CTCACTGACCTCAAAGGAAG+CGG 0.607832 2_4:-998668 None:intergenic
CAGGAAGCCGGAGCCCGTGT+CGG 0.608070 2_4:+996332 Msa0307860:CDS
CGTAGATACTTCTACCCGCA+TGG 0.610484 2_4:+999430 Msa0307860:three_prime_UTR
GAATTCAGGGAGGACTCAAG+GGG 0.615559 2_4:+999385 Msa0307860:three_prime_UTR
GGCGGCTATTCTAGAGGACG+GGG 0.620265 2_4:+999341 Msa0307860:three_prime_UTR
ACTTGTCCTATTCTCAAACA+AGG 0.620485 2_4:+999252 Msa0307860:three_prime_UTR
CTTCGTGTTAGTTTGTTGTG+TGG 0.622006 2_4:+999707 Msa0307860:three_prime_UTR
ACAGAAGCAAGGTTAGGCGG+CGG 0.622574 2_4:+999131 Msa0307860:three_prime_UTR
TAACAACCAGACTAAACCAA+TGG 0.622757 2_4:+995564 Msa0307860:exon
GATGACAGTGACGACGATGA+TGG 0.623470 2_4:+995868 Msa0307860:CDS
TCCATTAATAAGAACCCTTG+TGG 0.625098 2_4:-998743 None:intergenic
TATTAGCAGAAGCCTGAGCA+AGG 0.625753 2_4:-996107 None:intergenic
TCATGTTATGGCTGCCACAA+GGG 0.627218 2_4:+998729 Msa0307860:three_prime_UTR
ACTGACCTCAAAGGAAGCGG+CGG 0.634526 2_4:-998665 None:intergenic
GTCGTCACTGTCATCAACAA+CGG 0.635755 2_4:-995860 None:intergenic
TATCGTTCAGTCAAGCTGGT+GGG 0.636549 2_4:+999315 Msa0307860:three_prime_UTR
GGACGTACAGGATACGGTGG+AGG 0.637438 2_4:+999284 Msa0307860:three_prime_UTR
GAACGTCTTCAGGTGGCAGG+TGG 0.637601 2_4:+999225 Msa0307860:three_prime_UTR
TTATCGTTCAGTCAAGCTGG+TGG 0.641328 2_4:+999314 Msa0307860:three_prime_UTR
AAGAAAGGGGATGACTATGA+CGG 0.642172 2_4:+996792 Msa0307860:CDS
GTGTTCATAGTATTGTCAGT+AGG 0.642718 2_4:+998961 Msa0307860:three_prime_UTR
TCAACATATTCACGTGTGTG+GGG 0.645878 2_4:-996897 None:intergenic
CACCGTGCTAGAAATGCTGA+AGG 0.646843 2_4:+998830 Msa0307860:three_prime_UTR
GGCTTCGAGATTCTGGACAC+AGG 0.648433 2_4:+995585 Msa0307860:CDS
GAAGTTTCAGAATCCGACAC+GGG 0.650738 2_4:-996345 None:intergenic
TATTAATGGAGATTTCCAGA+AGG 0.655339 2_4:+998756 Msa0307860:three_prime_UTR
AAAATGCGTGCAGAATATGC+TGG 0.655482 2_4:+996695 Msa0307860:CDS
GGGGCAGGAAGGGAACTGGA+AGG 0.655940 2_4:+996529 Msa0307860:CDS
GCAAGAAAATGTTCACCACA+TGG 0.657602 2_4:+997361 Msa0307860:CDS
GGTAGTGGAACGTCTTCAGG+TGG 0.658306 2_4:+999218 Msa0307860:three_prime_UTR
CTCCCCTAAGGCTAACCATG+CGG 0.664230 2_4:-999445 None:intergenic
TTACCCCGGAACTTGTGGCG+CGG 0.666773 2_4:+997168 Msa0307860:CDS
CAAACTCATCAAGAAGAGCA+TGG 0.667504 2_4:-997304 None:intergenic
GATGTTAATCCAGGCCTCAG+TGG 0.669943 2_4:+996648 Msa0307860:CDS
CAGTAGGATGATGATCAATG+AGG 0.670922 2_4:+998977 Msa0307860:three_prime_UTR
GCTGCTGGAAGTTCCCAACA+TGG 0.671778 2_4:+998596 Msa0307860:CDS
GGAGAGTCCTGAGAGTGAGG+GGG 0.672377 2_4:+996239 Msa0307860:CDS
TGTGCAAGAACAACAAACTG+AGG 0.676475 2_4:-996936 None:intergenic
GGCATATGCCCATAAATGTG+TGG 0.678845 2_4:+996670 Msa0307860:CDS
GACGGACCCATTCATGTCTG+GGG 0.680909 2_4:+996810 Msa0307860:CDS
TGAATATGTTGAGAGACTCA+GGG 0.682868 2_4:+996908 Msa0307860:CDS
AGAAGTTTCAGAATCCGACA+CGG 0.685846 2_4:-996346 None:intergenic
ATTGGCTGAGATGACCGTAG+AGG 0.686209 2_4:+997076 Msa0307860:CDS
CTGACAATACTATGAACACG+AGG 0.689117 2_4:-998957 None:intergenic
ATTCTTGATCTGATCAACAG+TGG 0.701566 2_4:-995944 None:intergenic
AAAGAGATTCTGGAAGCCAG+GGG 0.701656 2_4:+996510 Msa0307860:CDS
GCATCGCCATCATCACCAGG+AGG 0.707685 2_4:-996387 None:intergenic
TGCGGGTAGAAGTATCTACG+TGG 0.710114 2_4:-999427 None:intergenic
TGATCCCTGACAGTTTCAGG+AGG 0.717851 2_4:-998709 None:intergenic
GCGGGTAGAAGTATCTACGT+GGG 0.720335 2_4:-999426 None:intergenic
AATTCAGGGAGGACTCAAGG+GGG 0.722566 2_4:+999386 Msa0307860:three_prime_UTR
GCTGAAGGATAAAATCAAGG+AGG 0.734791 2_4:+998845 Msa0307860:three_prime_UTR
AAAGCCTAGTGAGATCACAT+GGG 0.747188 2_4:+996467 Msa0307860:CDS
GAAGAACAATAAGCAATACG+AGG 0.757858 2_4:+996197 Msa0307860:CDS
AGTGGACGTACAGGATACGG+TGG 0.758461 2_4:+999281 Msa0307860:three_prime_UTR
TTATGGGCATATGCCCACTG+AGG 0.770132 2_4:-996662 None:intergenic
GCGGCTATCAGAATTCAGGG+AGG 0.799750 2_4:+999375 Msa0307860:three_prime_UTR
TTTGTGTCGAAATGTCCATG+TGG 0.823137 2_4:-997376 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATAGAAATAGAAAAATAAA+AGG + chr2_4:997733-997752 Msa0307860:intron 15.0%
!! CAGAAATTAAATTTGATTAT+TGG + chr2_4:997862-997881 Msa0307860:intron 15.0%
!!! TATTTTCCTTTAATTTTCTA+TGG - chr2_4:998043-998062 None:intergenic 15.0%
!!! ATAAATTTTTTGAATTGAGT+GGG - chr2_4:998113-998132 None:intergenic 15.0%
!!! AATAAATTTTTTGAATTGAG+TGG - chr2_4:998114-998133 None:intergenic 15.0%
!!! TTGTTAATTTTTTTTCTTGA+GGG + chr2_4:999681-999700 Msa0307860:three_prime_UTR 15.0%
!! AATCAATATACGAAAATTCA+CGG - chr2_4:995446-995465 None:intergenic 20.0%
!! ATCTATTTGAAAAAAATAGC+CGG - chr2_4:997579-997598 None:intergenic 20.0%
!! TGTCAATGTAAAGATAAATA+AGG - chr2_4:997782-997801 None:intergenic 20.0%
!! TATAATATTATTGCTCAACT+TGG + chr2_4:997829-997848 Msa0307860:intron 20.0%
!!! TGTTTTTGTTTTTGTTTCTA+AGG + chr2_4:997925-997944 Msa0307860:intron 20.0%
!!! TTTTATTTTCATCTTGTTAC+TGG + chr2_4:997959-997978 Msa0307860:intron 20.0%
!!! TTTATTTTCATCTTGTTACT+GGG + chr2_4:997960-997979 Msa0307860:intron 20.0%
!! TATAAGCCATAGAAAATTAA+AGG + chr2_4:998034-998053 Msa0307860:intron 20.0%
!!! TAAATTTTTTGAATTGAGTG+GGG - chr2_4:998112-998131 None:intergenic 20.0%
!!! CAAAAAATTTATTTTGCCAT+TGG + chr2_4:998121-998140 Msa0307860:intron 20.0%
!! CTATTCTTTAATTATCTTTC+AGG + chr2_4:998488-998507 Msa0307860:intron 20.0%
!! AGATTTATATGCATATGATA+TGG - chr2_4:998540-998559 None:intergenic 20.0%
!! TAATAAACTGGTAAAAGAAA+AGG - chr2_4:999518-999537 None:intergenic 20.0%
!! TTAAGTGCATAATAATAAAC+TGG - chr2_4:999530-999549 None:intergenic 20.0%
!! ATTTCAGATGAAATTTCTTT+GGG + chr2_4:999562-999581 Msa0307860:three_prime_UTR 20.0%
!!! CTTGTTAATTTTTTTTCTTG+AGG + chr2_4:999680-999699 Msa0307860:three_prime_UTR 20.0%
!!! TGTTAATTTTTTTTCTTGAG+GGG + chr2_4:999682-999701 Msa0307860:three_prime_UTR 20.0%
!!! CATTTTTTCCACACATTTAT+GGG - chr2_4:996681-996700 None:intergenic 25.0%
! AATCATCAACCTTTATGTTT+GGG - chr2_4:996746-996765 None:intergenic 25.0%
! ATGAGAATGAAACTAAGAAA+GGG + chr2_4:996778-996797 Msa0307860:CDS 25.0%
! GTATCACTGATATACAAATA+CGG + chr2_4:997236-997255 Msa0307860:CDS 25.0%
!!! GACACAAATACTTTTTAACA+GGG + chr2_4:997391-997410 Msa0307860:CDS 25.0%
! TCTATTTGAAAAAAATAGCC+GGG - chr2_4:997578-997597 None:intergenic 25.0%
!! CTTTATTAATGTACTTGTTG+TGG + chr2_4:997613-997632 Msa0307860:intron 25.0%
! TAGAAAAATAAAAGGTGATC+TGG + chr2_4:997741-997760 Msa0307860:intron 25.0%
!! TTATTTTCATCTTGTTACTG+GGG + chr2_4:997961-997980 Msa0307860:intron 25.0%
! TTTCTATGGCTTATACAATA+GGG - chr2_4:998029-998048 None:intergenic 25.0%
!! TTTTCTATGGCTTATACAAT+AGG - chr2_4:998030-998049 None:intergenic 25.0%
! TTTCAGTTATGCTAAAAGTA+AGG - chr2_4:998173-998192 None:intergenic 25.0%
!! TAATCGTAATCCGAAATTTT+GGG - chr2_4:998335-998354 None:intergenic 25.0%
!! ATAATCGTAATCCGAAATTT+TGG - chr2_4:998336-998355 None:intergenic 25.0%
!! CATACTTCATATTGGATTTT+TGG + chr2_4:998389-998408 Msa0307860:intron 25.0%
! CTTTAATTATCTTTCAGGAA+AGG + chr2_4:998493-998512 Msa0307860:intron 25.0%
! ATCATATGATTCTTTCAGTT+TGG + chr2_4:998902-998921 Msa0307860:three_prime_UTR 25.0%
! GATTTCAGATGAAATTTCTT+TGG + chr2_4:999561-999580 Msa0307860:three_prime_UTR 25.0%
! CATAAATCAGAACAAACATT+GGG - chr2_4:999623-999642 None:intergenic 25.0%
CTGGTTGTTATGAGAATTTA+GGG - chr2_4:995554-995573 None:intergenic 30.0%
TCTGGTTGTTATGAGAATTT+AGG - chr2_4:995555-995574 None:intergenic 30.0%
!! TTTGGTTTGTAGGTATCTAT+TGG - chr2_4:995839-995858 None:intergenic 30.0%
! GTAAAGATTAGGGATCTTTT+GGG - chr2_4:996058-996077 None:intergenic 30.0%
! TGTAAAGATTAGGGATCTTT+TGG - chr2_4:996059-996078 None:intergenic 30.0%
!!! TTTTTGCTTCATTGAGTTGA+AGG - chr2_4:996172-996191 None:intergenic 30.0%
AGGACTTGATTATCAAATGT+AGG + chr2_4:996217-996236 Msa0307860:CDS 30.0%
GGACTTGATTATCAAATGTA+GGG + chr2_4:996218-996237 Msa0307860:CDS 30.0%
! TTTAGCAACTTTTGTTAGGA+AGG - chr2_4:996577-996596 None:intergenic 30.0%
!!! GTGTTTTAGCAACTTTTGTT+AGG - chr2_4:996581-996600 None:intergenic 30.0%
!!! GCATTTTTTCCACACATTTA+TGG - chr2_4:996682-996701 None:intergenic 30.0%
GAATCATCAACCTTTATGTT+TGG - chr2_4:996747-996766 None:intergenic 30.0%
GATGAGAATGAAACTAAGAA+AGG + chr2_4:996777-996796 Msa0307860:CDS 30.0%
TGAGAATGAAACTAAGAAAG+GGG + chr2_4:996779-996798 Msa0307860:CDS 30.0%
AGATTTCAAAGCTTCTTCTA+AGG + chr2_4:996989-997008 Msa0307860:CDS 30.0%
TTATGAAGCAACGAGAAAAT+TGG + chr2_4:997058-997077 Msa0307860:CDS 30.0%
TGATACTAACACATCCATTA+AGG - chr2_4:997222-997241 None:intergenic 30.0%
!! CGACACAAATACTTTTTAAC+AGG + chr2_4:997390-997409 Msa0307860:CDS 30.0%
TGTTTGTCTGAACTTTATTC+TGG + chr2_4:997473-997492 Msa0307860:CDS 30.0%
ATCTTTACATTGACATTGAG+TGG + chr2_4:997787-997806 Msa0307860:intron 30.0%
TCTTTACATTGACATTGAGT+GGG + chr2_4:997788-997807 Msa0307860:intron 30.0%
! TATTTTCATCTTGTTACTGG+GGG + chr2_4:997962-997981 Msa0307860:intron 30.0%
!! TTATTTTGCCATTGGTAGTT+CGG + chr2_4:998129-998148 Msa0307860:intron 30.0%
TAGCATAACTGAAATTGATG+AGG + chr2_4:998179-998198 Msa0307860:intron 30.0%
AGCATAACTGAAATTGATGA+GGG + chr2_4:998180-998199 Msa0307860:intron 30.0%
ATGTTCAAACCCCAAAATTT+CGG + chr2_4:998322-998341 Msa0307860:intron 30.0%
! AATCGTAATCCGAAATTTTG+GGG - chr2_4:998334-998353 None:intergenic 30.0%
GTGAATACCACAAACAATAA+AGG + chr2_4:998364-998383 Msa0307860:intron 30.0%
TAAAGGCTCATACTTCATAT+TGG + chr2_4:998381-998400 Msa0307860:intron 30.0%
!! GGATTTTTGGAAATCCTAAT+CGG + chr2_4:998402-998421 Msa0307860:intron 30.0%
AATTATCTTTCAGGAAAGGT+TGG + chr2_4:998497-998516 Msa0307860:intron 30.0%
TATTAATGGAGATTTCCAGA+AGG + chr2_4:998756-998775 Msa0307860:three_prime_UTR 30.0%
AAGAGATGCAATAATGTCAA+AGG - chr2_4:998782-998801 None:intergenic 30.0%
AATGCTGAAGGATAAAATCA+AGG + chr2_4:998842-998861 Msa0307860:three_prime_UTR 30.0%
ATGATGAAGAGAAGGTAAAT+AGG - chr2_4:998887-998906 None:intergenic 30.0%
AGAATCATATGATGAAGAGA+AGG - chr2_4:998895-998914 None:intergenic 30.0%
TAGATAATTTCTCAGTCAAC+TGG - chr2_4:999085-999104 None:intergenic 30.0%
TATGCACTTAATCTAGATTC+TGG + chr2_4:999539-999558 Msa0307860:three_prime_UTR 30.0%
CCATAAATCAGAACAAACAT+TGG - chr2_4:999624-999643 None:intergenic 30.0%
CCAATGTTTGTTCTGATTTA+TGG + chr2_4:999621-999640 Msa0307860:three_prime_UTR 30.0%
TAACAACCAGACTAAACCAA+TGG + chr2_4:995564-995583 Msa0307860:exon 35.0%
TGAATAAACACAGAGAGAGA+CGG - chr2_4:995662-995681 None:intergenic 35.0%
GGTTCATCATCAATATCAGT+GGG - chr2_4:995772-995791 None:intergenic 35.0%
AGGTTCATCATCAATATCAG+TGG - chr2_4:995773-995792 None:intergenic 35.0%
! CTATTGGCTGTATTGTTGTT+GGG - chr2_4:995823-995842 None:intergenic 35.0%
! TCTATTGGCTGTATTGTTGT+TGG - chr2_4:995824-995843 None:intergenic 35.0%
! CAGATTTAACAACACGCTTT+TGG - chr2_4:995894-995913 None:intergenic 35.0%
!! AGATAAGCGTTTTGATGAGA+TGG + chr2_4:995918-995937 Msa0307860:CDS 35.0%
ATTCTTGATCTGATCAACAG+TGG - chr2_4:995947-995966 None:intergenic 35.0%
ATGCTATCAAGATCAATGAC+TGG + chr2_4:995965-995984 Msa0307860:CDS 35.0%
TGCTATCAAGATCAATGACT+GGG + chr2_4:995966-995985 Msa0307860:CDS 35.0%
GATCCCTAATCTTTACATCA+AGG + chr2_4:996062-996081 Msa0307860:CDS 35.0%
GAGCCTTGATGTAAAGATTA+GGG - chr2_4:996068-996087 None:intergenic 35.0%
AGAGCCTTGATGTAAAGATT+AGG - chr2_4:996069-996088 None:intergenic 35.0%
GAAGAACAATAAGCAATACG+AGG + chr2_4:996197-996216 Msa0307860:CDS 35.0%
AGGTTCAATGATCTCATCAT+CGG - chr2_4:996304-996323 None:intergenic 35.0%
AAAAGCTTAGCAAGAAAGAC+AGG + chr2_4:996421-996440 Msa0307860:CDS 35.0%
CAAGAAGTTCAAAGAGATTC+TGG + chr2_4:996500-996519 Msa0307860:CDS 35.0%
!! CATAAAGGTTGATGATTCTG+TGG + chr2_4:996749-996768 Msa0307860:CDS 35.0%
TGAATATGTTGAGAGACTCA+GGG + chr2_4:996908-996927 Msa0307860:CDS 35.0%
CAATGCTTTCAAGATATTCC+TGG - chr2_4:996968-996987 None:intergenic 35.0%
! CAGGAATATCTTGAAAGCAT+TGG + chr2_4:996966-996985 Msa0307860:CDS 35.0%
! TGAGGAGTTAAAAGGTTTTG+AGG + chr2_4:997118-997137 Msa0307860:CDS 35.0%
!!! ATTAAGGTCCTGCTATTTTC+CGG - chr2_4:997206-997225 None:intergenic 35.0%
! AGTTAGGTCTATGTGCTTTT+CGG + chr2_4:997423-997442 Msa0307860:CDS 35.0%
TTGTCTGAACTTTATTCTGG+TGG + chr2_4:997476-997495 Msa0307860:CDS 35.0%
! CTGGAGTCTTTTCATGATAA+CGG - chr2_4:997541-997560 None:intergenic 35.0%
CAAATAGATGTCTCATAGCA+TGG + chr2_4:997590-997609 Msa0307860:intron 35.0%
ATCAGATACAATGTAAGCAC+CGG - chr2_4:997650-997669 None:intergenic 35.0%
!! TTTCTTTAGAGCAGTGACAT+TGG - chr2_4:997698-997717 None:intergenic 35.0%
CTTTACATTGACATTGAGTG+GGG + chr2_4:997789-997808 Msa0307860:intron 35.0%
! GTGGGGATTAATCAATTTTG+AGG + chr2_4:997806-997825 Msa0307860:intron 35.0%
TGTTAAACTCATAGAGCATG+AGG + chr2_4:998067-998086 Msa0307860:intron 35.0%
GTTAAACTCATAGAGCATGA+GGG + chr2_4:998068-998087 Msa0307860:intron 35.0%
TTAAACTCATAGAGCATGAG+GGG + chr2_4:998069-998088 Msa0307860:intron 35.0%
AAAAGTAAGGCACACTTTGT+TGG - chr2_4:998160-998179 None:intergenic 35.0%
! CATGCTCTTATTTCACTACA+TGG - chr2_4:998230-998249 None:intergenic 35.0%
! TCACAGAAAGTTTTCTGTCT+TGG + chr2_4:998298-998317 Msa0307860:intron 35.0%
GTATGAGCCTTTATTGTTTG+TGG - chr2_4:998374-998393 None:intergenic 35.0%
! TTTGCCGTATTTCTATCTAC+CGG + chr2_4:998430-998449 Msa0307860:intron 35.0%
AGTGAGAAACAAACATTCAC+CGG + chr2_4:998685-998704 Msa0307860:three_prime_UTR 35.0%
TCCATTAATAAGAACCCTTG+TGG - chr2_4:998746-998765 None:intergenic 35.0%
TGACATTATTGCATCTCTTG+AGG + chr2_4:998783-998802 Msa0307860:three_prime_UTR 35.0%
GTGTTCATAGTATTGTCAGT+AGG + chr2_4:998961-998980 Msa0307860:three_prime_UTR 35.0%
TCAGAAATGTTGAACTCTCA+AGG + chr2_4:999042-999061 Msa0307860:three_prime_UTR 35.0%
CAGAAATGTTGAACTCTCAA+GGG + chr2_4:999043-999062 Msa0307860:three_prime_UTR 35.0%
ACTTGTCCTATTCTCAAACA+AGG + chr2_4:999252-999271 Msa0307860:three_prime_UTR 35.0%
AGCTGCAGTTTCTTCTTCAT+CGG + chr2_4:995495-995514 Msa0307860:five_prime_UTR 40.0%
TTGTTGGGTTCATCATCAAC+GGG - chr2_4:995808-995827 None:intergenic 40.0%
GTTGTTGGGTTCATCATCAA+CGG - chr2_4:995809-995828 None:intergenic 40.0%
!! CTTCATTGAGTTGAAGGCTT+TGG - chr2_4:996166-996185 None:intergenic 40.0%
AGAAGTTTCAGAATCCGACA+CGG - chr2_4:996349-996368 None:intergenic 40.0%
!! GATTCTGAAACTTCTGAGCT+TGG + chr2_4:996354-996373 Msa0307860:CDS 40.0%
! TTGCTAAGCTTTTGATCCCA+AGG - chr2_4:996414-996433 None:intergenic 40.0%
! TAGCAAGAAAGACAGGCTTT+TGG + chr2_4:996428-996447 Msa0307860:CDS 40.0%
AAAAGCCTAGTGAGATCACA+TGG + chr2_4:996466-996485 Msa0307860:CDS 40.0%
AAAGCCTAGTGAGATCACAT+GGG + chr2_4:996467-996486 Msa0307860:CDS 40.0%
GCTCAGTTTGATGTTAATCC+AGG + chr2_4:996639-996658 Msa0307860:CDS 40.0%
AAAATGCGTGCAGAATATGC+TGG + chr2_4:996695-996714 Msa0307860:CDS 40.0%
AAGAAAGGGGATGACTATGA+CGG + chr2_4:996792-996811 Msa0307860:CDS 40.0%
CTGCAAGCTCTTGAAAAACT+CGG - chr2_4:996868-996887 None:intergenic 40.0%
TCAACATATTCACGTGTGTG+GGG - chr2_4:996900-996919 None:intergenic 40.0%
CTCAACATATTCACGTGTGT+GGG - chr2_4:996901-996920 None:intergenic 40.0%
TCTCAACATATTCACGTGTG+TGG - chr2_4:996902-996921 None:intergenic 40.0%
GTGAATATGTTGAGAGACTC+AGG + chr2_4:996907-996926 Msa0307860:CDS 40.0%
TGTGCAAGAACAACAAACTG+AGG - chr2_4:996939-996958 None:intergenic 40.0%
!! TTCTAAGGTAGCCTTGAAGA+GGG + chr2_4:997004-997023 Msa0307860:CDS 40.0%
AATGAGTTCAACCCTCTTCA+AGG - chr2_4:997018-997037 None:intergenic 40.0%
CATTTACTACAAACCGCATG+AGG + chr2_4:997034-997053 Msa0307860:CDS 40.0%
GTTGCTTCATAAACCTCATG+CGG - chr2_4:997050-997069 None:intergenic 40.0%
!! AGATAATGGAGAGATGAGTG+AGG + chr2_4:997100-997119 Msa0307860:CDS 40.0%
GAGATGAGTGAGGAGTTAAA+AGG + chr2_4:997110-997129 Msa0307860:CDS 40.0%
!!! TTAAGGTCCTGCTATTTTCC+GGG - chr2_4:997205-997224 None:intergenic 40.0%
GGAAAATAGCAGGACCTTAA+TGG + chr2_4:997205-997224 Msa0307860:CDS 40.0%
CAAACTCATCAAGAAGAGCA+TGG - chr2_4:997307-997326 None:intergenic 40.0%
ACTCATAAGCAACAGATCAC+GGG - chr2_4:997336-997355 None:intergenic 40.0%
GACTCATAAGCAACAGATCA+CGG - chr2_4:997337-997356 None:intergenic 40.0%
GCAAGAAAATGTTCACCACA+TGG + chr2_4:997361-997380 Msa0307860:CDS 40.0%
TTTGTGTCGAAATGTCCATG+TGG - chr2_4:997379-997398 None:intergenic 40.0%
! GTTAGGTCTATGTGCTTTTC+GGG + chr2_4:997424-997443 Msa0307860:CDS 40.0%
CTGAACTTTATTCTGGTGGA+CGG + chr2_4:997480-997499 Msa0307860:CDS 40.0%
! TGAACTTTATTCTGGTGGAC+GGG + chr2_4:997481-997500 Msa0307860:CDS 40.0%
TCATGAAAAGACTCCAGAAC+AGG + chr2_4:997544-997563 Msa0307860:CDS 40.0%
TGAATTGAGTGGGGTAAGAA+AGG - chr2_4:998103-998122 None:intergenic 40.0%
! TTGCCGTATTTCTATCTACC+GGG + chr2_4:998431-998450 Msa0307860:intron 40.0%
TGACCCGGTAGATAGAAATA+CGG - chr2_4:998437-998456 None:intergenic 40.0%
AGGAAAGGTTGGAAAGAAGA+CGG + chr2_4:998508-998527 Msa0307860:intron 40.0%
GCATATAAATCTTGAGCTCC+TGG + chr2_4:998548-998567 Msa0307860:CDS 40.0%
!! ATGTAAGATGCACTGATTCC+AGG - chr2_4:998569-998588 None:intergenic 40.0%
ACGCTTAGCATCATGAACAT+TGG - chr2_4:998625-998644 None:intergenic 40.0%
! TTGTTTCTCACTGACCTCAA+AGG - chr2_4:998677-998696 None:intergenic 40.0%
AACTGTCAGGGATCATGTTA+TGG + chr2_4:998717-998736 Msa0307860:three_prime_UTR 40.0%
GCCACAAGGGTTCTTATTAA+TGG + chr2_4:998742-998761 Msa0307860:three_prime_UTR 40.0%
CAATAATGTCAAAGGCCTTC+TGG - chr2_4:998774-998793 None:intergenic 40.0%
TTATTGCATCTCTTGAGGTG+TGG + chr2_4:998788-998807 Msa0307860:three_prime_UTR 40.0%
!! ATCCTTCAGCATTTCTAGCA+CGG - chr2_4:998835-998854 None:intergenic 40.0%
GCTGAAGGATAAAATCAAGG+AGG + chr2_4:998845-998864 Msa0307860:three_prime_UTR 40.0%
GAAGGATAAAATCAAGGAGG+AGG + chr2_4:998848-998867 Msa0307860:three_prime_UTR 40.0%
CTGACAATACTATGAACACG+AGG - chr2_4:998960-998979 None:intergenic 40.0%
CAGTAGGATGATGATCAATG+AGG + chr2_4:998977-998996 Msa0307860:three_prime_UTR 40.0%
CTGAAAATAATGCACCCAGT+TGG - chr2_4:999026-999045 None:intergenic 40.0%
ATGAAAGAGCTACAGAAGCA+AGG + chr2_4:999120-999139 Msa0307860:three_prime_UTR 40.0%
TCCTATTCTCAAACAAGGCA+AGG + chr2_4:999257-999276 Msa0307860:three_prime_UTR 40.0%
!! CTTCGTGTTAGTTTGTTGTG+TGG + chr2_4:999707-999726 Msa0307860:three_prime_UTR 40.0%
!!! GGTTTTGTTTTGCGCGATGA+AGG - chr2_4:995533-995552 None:intergenic 45.0%
!! TCGAAGCCATTGGTTTAGTC+TGG - chr2_4:995573-995592 None:intergenic 45.0%
AACCAATGGCTTCGAGATTC+TGG + chr2_4:995578-995597 Msa0307860:exon 45.0%
! TCAACGGGTTCAGTATCGTT+AGG - chr2_4:995793-995812 None:intergenic 45.0%
!! CAACAACGGGTTTGGTTTGT+AGG - chr2_4:995849-995868 None:intergenic 45.0%
! ACTGTCATCAACAACGGGTT+TGG - chr2_4:995857-995876 None:intergenic 45.0%
TCGTCACTGTCATCAACAAC+GGG - chr2_4:995862-995881 None:intergenic 45.0%
GTCGTCACTGTCATCAACAA+CGG - chr2_4:995863-995882 None:intergenic 45.0%
GCTTGAAGATTTCCTTGCTC+AGG + chr2_4:996095-996114 Msa0307860:CDS 45.0%
TATTAGCAGAAGCCTGAGCA+AGG - chr2_4:996110-996129 None:intergenic 45.0%
TGCTCAGGCTTCTGCTAATA+AGG + chr2_4:996110-996129 Msa0307860:CDS 45.0%
! TTGAAGGCTTTGGCATTGCT+GGG - chr2_4:996156-996175 None:intergenic 45.0%
TCATTGAACCTGATCAGCTC+AGG + chr2_4:996313-996332 Msa0307860:CDS 45.0%
GAAGTTTCAGAATCCGACAC+GGG - chr2_4:996348-996367 None:intergenic 45.0%
!! CTTCTGAGCTTGGTAATGAC+AGG + chr2_4:996364-996383 Msa0307860:CDS 45.0%
! TCAAAGAGATTCTGGAAGCC+AGG + chr2_4:996508-996527 Msa0307860:CDS 45.0%
! CAAAGAGATTCTGGAAGCCA+GGG + chr2_4:996509-996528 Msa0307860:CDS 45.0%
! AAAGAGATTCTGGAAGCCAG+GGG + chr2_4:996510-996529 Msa0307860:CDS 45.0%
! GCTGCAGATTCTTTTCAGTG+TGG + chr2_4:996611-996630 Msa0307860:CDS 45.0%
ATGTTAATCCAGGCCTCAGT+GGG + chr2_4:996649-996668 Msa0307860:CDS 45.0%
GGCATATGCCCATAAATGTG+TGG + chr2_4:996670-996689 Msa0307860:CDS 45.0%
AAGTTGCCCCAGACATGAAT+GGG - chr2_4:996819-996838 None:intergenic 45.0%
TAAGTTGCCCCAGACATGAA+TGG - chr2_4:996820-996839 None:intergenic 45.0%
TGTTCTTGCACAGAATGTCC+AGG + chr2_4:996947-996966 Msa0307860:CDS 45.0%
!! CTTCTAAGGTAGCCTTGAAG+AGG + chr2_4:997003-997022 Msa0307860:CDS 45.0%
ATGACCGTAGAGGGAGATAA+TGG + chr2_4:997086-997105 Msa0307860:CDS 45.0%
CTCTCCATTATCTCCCTCTA+CGG - chr2_4:997093-997112 None:intergenic 45.0%
AGTTCCGGGGTAACAACAAA+CGG - chr2_4:997161-997180 None:intergenic 45.0%
AACAGGGCTATGTCACAGTT+AGG + chr2_4:997407-997426 Msa0307860:CDS 45.0%
!!! GTCTATGTGCTTTTCGGGTT+GGG + chr2_4:997429-997448 Msa0307860:CDS 45.0%
CCAGAACAGGTACTAAATCC+CGG + chr2_4:997557-997576 Msa0307860:intron 45.0%
TGTTGTGGTCAAGTGCATAC+CGG + chr2_4:997628-997647 Msa0307860:intron 45.0%
TTTCATCTTGTTACTGGGGG+AGG + chr2_4:997965-997984 Msa0307860:intron 45.0%
TTCATCTTGTTACTGGGGGA+GGG + chr2_4:997966-997985 Msa0307860:intron 45.0%
! TTGCCATTGGTAGTTCGGTT+TGG + chr2_4:998134-998153 Msa0307860:intron 45.0%
! TACGGCAAAAGTTGCCGATT+AGG - chr2_4:998419-998438 None:intergenic 45.0%
GATTAAACCCTCACATGACC+CGG - chr2_4:998452-998471 None:intergenic 45.0%
TCTTACATCTGCTATGCTGC+TGG + chr2_4:998581-998600 Msa0307860:CDS 45.0%
! TGAACATTGGCTGCCATGTT+GGG - chr2_4:998612-998631 None:intergenic 45.0%
! ATGAACATTGGCTGCCATGT+TGG - chr2_4:998613-998632 None:intergenic 45.0%
ACATGATCCCTGACAGTTTC+AGG - chr2_4:998715-998734 None:intergenic 45.0%
ATCATGTTATGGCTGCCACA+AGG + chr2_4:998728-998747 Msa0307860:three_prime_UTR 45.0%
TCATGTTATGGCTGCCACAA+GGG + chr2_4:998729-998748 Msa0307860:three_prime_UTR 45.0%
AGAGCTACAGAAGCAAGGTT+AGG + chr2_4:999125-999144 Msa0307860:three_prime_UTR 45.0%
!! GCCTTGCCTTGTTTGAGAAT+AGG - chr2_4:999261-999280 None:intergenic 45.0%
GCATTATCGTTCAGTCAAGC+TGG + chr2_4:999311-999330 Msa0307860:three_prime_UTR 45.0%
TTATCGTTCAGTCAAGCTGG+TGG + chr2_4:999314-999333 Msa0307860:three_prime_UTR 45.0%
TATCGTTCAGTCAAGCTGGT+GGG + chr2_4:999315-999334 Msa0307860:three_prime_UTR 45.0%
AGAATTCAGGGAGGACTCAA+GGG + chr2_4:999384-999403 Msa0307860:three_prime_UTR 45.0%
TCAAGGGGGTTCAACATTGA+GGG + chr2_4:999400-999419 Msa0307860:three_prime_UTR 45.0%
CAGAACAAACATTGGGAGCT+GGG - chr2_4:999616-999635 None:intergenic 45.0%
TCAGAACAAACATTGGGAGC+TGG - chr2_4:999617-999636 None:intergenic 45.0%
!! TTATTATTATTATTATTCTT+AGG + chr2_4:995720-995739 Msa0307860:intron 5.0%
!! TATTATTATTATTATTCTTA+GGG + chr2_4:995721-995740 Msa0307860:intron 5.0%
GTCCAGAATCTCGAAGCCAT+TGG - chr2_4:995583-995602 None:intergenic 50.0%
GATGACAGTGACGACGATGA+TGG + chr2_4:995868-995887 Msa0307860:CDS 50.0%
GCTGGGACTCATCTTCTTCT+TGG - chr2_4:996139-996158 None:intergenic 50.0%
! GTTGAAGGCTTTGGCATTGC+TGG - chr2_4:996157-996176 None:intergenic 50.0%
GGAAAAGGATGACGAGGATG+AGG + chr2_4:996260-996279 Msa0307860:CDS 50.0%
!! TGATGATGGCGATGCTCCTT+GGG + chr2_4:996395-996414 Msa0307860:CDS 50.0%
GTGTCCCATGTGATCTCACT+AGG - chr2_4:996474-996493 None:intergenic 50.0%
GGGAACTGGAAGGTTTGAAC+AGG + chr2_4:996539-996558 Msa0307860:CDS 50.0%
AGAATCTGCAGCTTCTGAGC+AGG - chr2_4:996603-996622 None:intergenic 50.0%
GATGTTAATCCAGGCCTCAG+TGG + chr2_4:996648-996667 Msa0307860:CDS 50.0%
TTATGGGCATATGCCCACTG+AGG - chr2_4:996665-996684 None:intergenic 50.0%
CGTGCAGCACCCAAACATAA+AGG + chr2_4:996734-996753 Msa0307860:CDS 50.0%
!! ATGACGGACCCATTCATGTC+TGG + chr2_4:996808-996827 Msa0307860:CDS 50.0%
! TGACGGACCCATTCATGTCT+GGG + chr2_4:996809-996828 Msa0307860:CDS 50.0%
ATTGGCTGAGATGACCGTAG+AGG + chr2_4:997076-997095 Msa0307860:CDS 50.0%
TTGGCTGAGATGACCGTAGA+GGG + chr2_4:997077-997096 Msa0307860:CDS 50.0%
!! TGCTCCGTTTGTTGTTACCC+CGG + chr2_4:997154-997173 Msa0307860:CDS 50.0%
TGTTGTTACCCCGGAACTTG+TGG + chr2_4:997163-997182 Msa0307860:CDS 50.0%
!!! CTGCTATTTTCCGGGAAGGT+GGG - chr2_4:997197-997216 None:intergenic 50.0%
!!! GGTCTATGTGCTTTTCGGGT+TGG + chr2_4:997428-997447 Msa0307860:CDS 50.0%
! TTATTCTGGTGGACGGGTGA+AGG + chr2_4:997487-997506 Msa0307860:CDS 50.0%
GTGAAGGAATTGCTTGCGCA+AGG + chr2_4:997503-997522 Msa0307860:CDS 50.0%
CCGGGATTTAGTACCTGTTC+TGG - chr2_4:997560-997579 None:intergenic 50.0%
TCATCTTGTTACTGGGGGAG+GGG + chr2_4:997967-997986 Msa0307860:intron 50.0%
TGGCCAAACCGAACTACCAA+TGG - chr2_4:998140-998159 None:intergenic 50.0%
TCTATCTACCGGGTCATGTG+AGG + chr2_4:998441-998460 Msa0307860:intron 50.0%
CTATCTACCGGGTCATGTGA+GGG + chr2_4:998442-998461 Msa0307860:intron 50.0%
AATTTCCGCCGCTTCCTTTG+AGG + chr2_4:998660-998679 Msa0307860:CDS 50.0%
CTCACTGACCTCAAAGGAAG+CGG - chr2_4:998671-998690 None:intergenic 50.0%
TGATCCCTGACAGTTTCAGG+AGG - chr2_4:998712-998731 None:intergenic 50.0%
CACCGTGCTAGAAATGCTGA+AGG + chr2_4:998830-998849 Msa0307860:three_prime_UTR 50.0%
!! AAATCAAGGAGGAGGCGCTT+AGG + chr2_4:998856-998875 Msa0307860:three_prime_UTR 50.0%
ATGAGGAGCTTCATGCAAGC+TGG + chr2_4:998994-999013 Msa0307860:three_prime_UTR 50.0%
TGAGGAGCTTCATGCAAGCT+GGG + chr2_4:998995-999014 Msa0307860:three_prime_UTR 50.0%
! TGTTGAACTCTCAAGGGTGC+AGG + chr2_4:999049-999068 Msa0307860:three_prime_UTR 50.0%
GCTACAGAAGCAAGGTTAGG+CGG + chr2_4:999128-999147 Msa0307860:three_prime_UTR 50.0%
TCTCAAACAAGGCAAGGCAG+TGG + chr2_4:999263-999282 Msa0307860:three_prime_UTR 50.0%
GAGGCGGCTATCAGAATTCA+GGG + chr2_4:999372-999391 Msa0307860:three_prime_UTR 50.0%
CAGAATTCAGGGAGGACTCA+AGG + chr2_4:999383-999402 Msa0307860:three_prime_UTR 50.0%
GAATTCAGGGAGGACTCAAG+GGG + chr2_4:999385-999404 Msa0307860:three_prime_UTR 50.0%
AATTCAGGGAGGACTCAAGG+GGG + chr2_4:999386-999405 Msa0307860:three_prime_UTR 50.0%
CTCAAGGGGGTTCAACATTG+AGG + chr2_4:999399-999418 Msa0307860:three_prime_UTR 50.0%
CAAGGGGGTTCAACATTGAG+GGG + chr2_4:999401-999420 Msa0307860:three_prime_UTR 50.0%
!! GCGGGTAGAAGTATCTACGT+GGG - chr2_4:999429-999448 None:intergenic 50.0%
!! TGCGGGTAGAAGTATCTACG+TGG - chr2_4:999430-999449 None:intergenic 50.0%
CGTAGATACTTCTACCCGCA+TGG + chr2_4:999430-999449 Msa0307860:three_prime_UTR 50.0%
!! TACCCGCATGGTTAGCCTTA+GGG + chr2_4:999442-999461 Msa0307860:three_prime_UTR 50.0%
GGCTTCGAGATTCTGGACAC+AGG + chr2_4:995585-995604 Msa0307860:CDS 55.0%
TAGGGAGAGTCCTGAGAGTG+AGG + chr2_4:996236-996255 Msa0307860:CDS 55.0%
AGGGAGAGTCCTGAGAGTGA+GGG + chr2_4:996237-996256 Msa0307860:CDS 55.0%
TCCTGAGAGTGAGGGGGAAA+AGG + chr2_4:996245-996264 Msa0307860:CDS 55.0%
! TCCTTTTCCCCCTCACTCTC+AGG - chr2_4:996249-996268 None:intergenic 55.0%
TGAGGGGGAAAAGGATGACG+AGG + chr2_4:996254-996273 Msa0307860:CDS 55.0%
ACCTGATCAGCTCAGGAAGC+CGG + chr2_4:996320-996339 Msa0307860:CDS 55.0%
!! CTTGGTAATGACAGGCCTCC+TGG + chr2_4:996372-996391 Msa0307860:CDS 55.0%
!! GTGATGATGGCGATGCTCCT+TGG + chr2_4:996394-996413 Msa0307860:CDS 55.0%
GACGGACCCATTCATGTCTG+GGG + chr2_4:996810-996829 Msa0307860:CDS 55.0%
GGGGTAACAACAAACGGAGC+AGG - chr2_4:997155-997174 None:intergenic 55.0%
!!! CCTGCTATTTTCCGGGAAGG+TGG - chr2_4:997198-997217 None:intergenic 55.0%
CCACCTTCCCGGAAAATAGC+AGG + chr2_4:997195-997214 Msa0307860:CDS 55.0%
!!! GGTCCTGCTATTTTCCGGGA+AGG - chr2_4:997201-997220 None:intergenic 55.0%
!!! ATGTGCTTTTCGGGTTGGGC+TGG + chr2_4:997433-997452 Msa0307860:CDS 55.0%
CATCTTGTTACTGGGGGAGG+GGG + chr2_4:997968-997987 Msa0307860:intron 55.0%
ATAGAGCATGAGGGGAAGCG+TGG + chr2_4:998077-998096 Msa0307860:intron 55.0%
GCTGCTGGAAGTTCCCAACA+TGG + chr2_4:998596-998615 Msa0307860:CDS 55.0%
ACTGACCTCAAAGGAAGCGG+CGG - chr2_4:998668-998687 None:intergenic 55.0%
CCTGACAGTTTCAGGAGGAC+CGG - chr2_4:998707-998726 None:intergenic 55.0%
CGGTCCTCCTGAAACTGTCA+GGG + chr2_4:998705-998724 Msa0307860:three_prime_UTR 55.0%
CAAGCTGGGATCAGCCAACT+GGG + chr2_4:999009-999028 Msa0307860:three_prime_UTR 55.0%
! ACTCTCAAGGGTGCAGGCTT+TGG + chr2_4:999055-999074 Msa0307860:three_prime_UTR 55.0%
ACAGAAGCAAGGTTAGGCGG+CGG + chr2_4:999131-999150 Msa0307860:three_prime_UTR 55.0%
TGCCTCCAAGGCGAAGAGAT+GGG + chr2_4:999165-999184 Msa0307860:three_prime_UTR 55.0%
!! GGTGGTAGTGGAACGTCTTC+AGG + chr2_4:999215-999234 Msa0307860:three_prime_UTR 55.0%
!! GGTAGTGGAACGTCTTCAGG+TGG + chr2_4:999218-999237 Msa0307860:three_prime_UTR 55.0%
GGCAGTGGACGTACAGGATA+CGG + chr2_4:999278-999297 Msa0307860:three_prime_UTR 55.0%
AGTGGACGTACAGGATACGG+TGG + chr2_4:999281-999300 Msa0307860:three_prime_UTR 55.0%
TTCAGTCAAGCTGGTGGGAG+TGG + chr2_4:999320-999339 Msa0307860:three_prime_UTR 55.0%
! GTGGCGGCTATTCTAGAGGA+CGG + chr2_4:999339-999358 Msa0307860:three_prime_UTR 55.0%
! TGGCGGCTATTCTAGAGGAC+GGG + chr2_4:999340-999359 Msa0307860:three_prime_UTR 55.0%
TCTAGAGGACGGGGAACGAT+TGG + chr2_4:999350-999369 Msa0307860:three_prime_UTR 55.0%
GGAGGCGGCTATCAGAATTC+AGG + chr2_4:999371-999390 Msa0307860:three_prime_UTR 55.0%
GCGGCTATCAGAATTCAGGG+AGG + chr2_4:999375-999394 Msa0307860:three_prime_UTR 55.0%
!! CTACCCGCATGGTTAGCCTT+AGG + chr2_4:999441-999460 Msa0307860:three_prime_UTR 55.0%
!! ACCCGCATGGTTAGCCTTAG+GGG + chr2_4:999443-999462 Msa0307860:three_prime_UTR 55.0%
TCCCCTAAGGCTAACCATGC+GGG - chr2_4:999447-999466 None:intergenic 55.0%
CTCCCCTAAGGCTAACCATG+CGG - chr2_4:999448-999467 None:intergenic 55.0%
GTCAAGCACGAACTCCCCTA+AGG - chr2_4:999460-999479 None:intergenic 55.0%
CAAACATTGGGAGCTGGGAG+AGG - chr2_4:999611-999630 None:intergenic 55.0%
GGGAGAGTCCTGAGAGTGAG+GGG + chr2_4:996238-996257 Msa0307860:CDS 60.0%
GGAGAGTCCTGAGAGTGAGG+GGG + chr2_4:996239-996258 Msa0307860:CDS 60.0%
TCCGGCTTCCTGAGCTGATC+AGG - chr2_4:996324-996343 None:intergenic 60.0%
TCAGAATCCGACACGGGCTC+CGG - chr2_4:996342-996361 None:intergenic 60.0%
! GACAGGCCTCCTGGTGATGA+TGG + chr2_4:996381-996400 Msa0307860:CDS 60.0%
GCATCGCCATCATCACCAGG+AGG - chr2_4:996390-996409 None:intergenic 60.0%
!! GGAGCATCGCCATCATCACC+AGG - chr2_4:996393-996412 None:intergenic 60.0%
! AGATTCTGGAAGCCAGGGGC+AGG + chr2_4:996514-996533 Msa0307860:CDS 60.0%
TTACCCCGGAACTTGTGGCG+CGG + chr2_4:997168-997187 Msa0307860:CDS 60.0%
TTTCCGCGCCACAAGTTCCG+GGG - chr2_4:997174-997193 None:intergenic 60.0%
GTTTCCGCGCCACAAGTTCC+GGG - chr2_4:997175-997194 None:intergenic 60.0%
GGTTTCCGCGCCACAAGTTC+CGG - chr2_4:997176-997195 None:intergenic 60.0%
!! GGGCTGGTTTCTGAAGCGCA+TGG + chr2_4:997449-997468 Msa0307860:CDS 60.0%
CCGGTCCTCCTGAAACTGTC+AGG + chr2_4:998704-998723 Msa0307860:three_prime_UTR 60.0%
GCAAGCTGGGATCAGCCAAC+TGG + chr2_4:999008-999027 Msa0307860:three_prime_UTR 60.0%
AAGCAAGGTTAGGCGGCGGT+GGG + chr2_4:999135-999154 Msa0307860:three_prime_UTR 60.0%
!! GTGGGTTGGATCTGCCTCCA+AGG + chr2_4:999153-999172 Msa0307860:three_prime_UTR 60.0%
CTGCCTCCAAGGCGAAGAGA+TGG + chr2_4:999164-999183 Msa0307860:three_prime_UTR 60.0%
TGCCCATCTCTTCGCCTTGG+AGG - chr2_4:999170-999189 None:intergenic 60.0%
TCCAAGGCGAAGAGATGGGC+AGG + chr2_4:999169-999188 Msa0307860:three_prime_UTR 60.0%
TCCTGCCCATCTCTTCGCCT+TGG - chr2_4:999173-999192 None:intergenic 60.0%
GATTATGCCGCTGCAGCTGC+TGG + chr2_4:999191-999210 Msa0307860:three_prime_UTR 60.0%
GTGGAACGTCTTCAGGTGGC+AGG + chr2_4:999222-999241 Msa0307860:three_prime_UTR 60.0%
GAACGTCTTCAGGTGGCAGG+TGG + chr2_4:999225-999244 Msa0307860:three_prime_UTR 60.0%
AGGCAAGGCAGTGGACGTAC+AGG + chr2_4:999272-999291 Msa0307860:three_prime_UTR 60.0%
GGACGTACAGGATACGGTGG+AGG + chr2_4:999284-999303 Msa0307860:three_prime_UTR 60.0%
AGTCAAGCTGGTGGGAGTGG+CGG + chr2_4:999323-999342 Msa0307860:three_prime_UTR 60.0%
GGGAGTGGCGGCTATTCTAG+AGG + chr2_4:999335-999354 Msa0307860:three_prime_UTR 60.0%
! GGCGGCTATTCTAGAGGACG+GGG + chr2_4:999341-999360 Msa0307860:three_prime_UTR 60.0%
AGAGGACGGGGAACGATTGG+AGG + chr2_4:999353-999372 Msa0307860:three_prime_UTR 60.0%
CATTGGGAGCTGGGAGAGGA+GGG - chr2_4:999607-999626 None:intergenic 60.0%
ACATTGGGAGCTGGGAGAGG+AGG - chr2_4:999608-999627 None:intergenic 60.0%
TCTGGAAGCCAGGGGCAGGA+AGG + chr2_4:996518-996537 Msa0307860:CDS 65.0%
CTGGAAGCCAGGGGCAGGAA+GGG + chr2_4:996519-996538 Msa0307860:CDS 65.0%
TCCAGTTCCCTTCCTGCCCC+TGG - chr2_4:996529-996548 None:intergenic 65.0%
GGGGCAGGAAGGGAACTGGA+AGG + chr2_4:996529-996548 Msa0307860:CDS 65.0%
GGCATATGCCCACTGAGGCC+TGG - chr2_4:996660-996679 None:intergenic 65.0%
GAAGCAAGGTTAGGCGGCGG+TGG + chr2_4:999134-999153 Msa0307860:three_prime_UTR 65.0%
AAGGTTAGGCGGCGGTGGGT+TGG + chr2_4:999139-999158 Msa0307860:three_prime_UTR 65.0%
TATGCCGCTGCAGCTGCTGG+TGG + chr2_4:999194-999213 Msa0307860:three_prime_UTR 65.0%
ACCACCACCAGCAGCTGCAG+CGG - chr2_4:999201-999220 None:intergenic 65.0%
!! GCAGCTGCTGGTGGTGGTAG+TGG + chr2_4:999203-999222 Msa0307860:three_prime_UTR 65.0%
GGACGGGGAACGATTGGAGG+CGG + chr2_4:999356-999375 Msa0307860:three_prime_UTR 65.0%
CAGGAAGCCGGAGCCCGTGT+CGG + chr2_4:996332-996351 Msa0307860:CDS 70.0%
GCCAGGGGCAGGAAGGGAAC+TGG + chr2_4:996525-996544 Msa0307860:CDS 70.0%
GGCGCGGAAACCCACCTTCC+CGG + chr2_4:997184-997203 Msa0307860:CDS 70.0%
GCCGCTGCAGCTGCTGGTGG+TGG + chr2_4:999197-999216 Msa0307860:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 995404 999775 995404 ID=Msa0307860;Name=Msa0307860
chr2_4 mRNA 995404 999775 995404 ID=Msa0307860-mRNA-1;Parent=Msa0307860;Name=Msa0307860-mRNA-1;_AED=0.01;_eAED=0.01;_QI=179|1|1|1|1|1|3|1095|672
chr2_4 exon 995404 995606 995404 ID=Msa0307860-mRNA-1:exon:390;Parent=Msa0307860-mRNA-1
chr2_4 exon 995742 997565 995742 ID=Msa0307860-mRNA-1:exon:391;Parent=Msa0307860-mRNA-1
chr2_4 exon 998510 999775 998510 ID=Msa0307860-mRNA-1:exon:392;Parent=Msa0307860-mRNA-1
chr2_4 five_prime_UTR 995404 995582 995404 ID=Msa0307860-mRNA-1:five_prime_utr;Parent=Msa0307860-mRNA-1
chr2_4 CDS 995583 995606 995583 ID=Msa0307860-mRNA-1:cds;Parent=Msa0307860-mRNA-1
chr2_4 CDS 995742 997565 995742 ID=Msa0307860-mRNA-1:cds;Parent=Msa0307860-mRNA-1
chr2_4 CDS 998510 998680 998510 ID=Msa0307860-mRNA-1:cds;Parent=Msa0307860-mRNA-1
chr2_4 three_prime_UTR 998681 999775 998681 ID=Msa0307860-mRNA-1:three_prime_utr;Parent=Msa0307860-mRNA-1
Gene Sequence

>Msa0307860

ATGGCTTCGAGATTCTGGACACAGGGTAACAGCGATAGTGACGATGACGAACCCACTGATATTGATGATGAACCTAACGATACTGAACCCGTTGATGATGAACCCAACAACAATACAGCCAATAGATACCTACAAACCAAACCCGTTGTTGATGACAGTGACGACGATGATGGCCAAAAGCGTGTTGTTAAATCTGCTAAAGATAAGCGTTTTGATGAGATGGCTTCCACTGTTGATCAGATCAAGAATGCTATCAAGATCAATGACTGGGTCAGCTTGCAAGAGAGCTTCGACAAGATCAACAAACAGCTCGAGAAAGTTATGCGTGTTATCGAGTCCCAAAAGATCCCTAATCTTTACATCAAGGCTCTTGTTATGCTTGAAGATTTCCTTGCTCAGGCTTCTGCTAATAAGGATGCCAAGAAGAAGATGAGTCCCAGCAATGCCAAAGCCTTCAACTCAATGAAGCAAAAATTGAAGAAGAACAATAAGCAATACGAGGACTTGATTATCAAATGTAGGGAGAGTCCTGAGAGTGAGGGGGAAAAGGATGACGAGGATGAGGACTCTGACGAATACGAGACCGATGATGAGATCATTGAACCTGATCAGCTCAGGAAGCCGGAGCCCGTGTCGGATTCTGAAACTTCTGAGCTTGGTAATGACAGGCCTCCTGGTGATGATGGCGATGCTCCTTGGGATCAAAAGCTTAGCAAGAAAGACAGGCTTTTGGAGAAAATGTTCTTGAAAAAGCCTAGTGAGATCACATGGGACACTGTTAACAAGAAGTTCAAAGAGATTCTGGAAGCCAGGGGCAGGAAGGGAACTGGAAGGTTTGAACAGGTTGAGCAGCTTACCTTCCTAACAAAAGTTGCTAAAACACCTGCTCAGAAGCTGCAGATTCTTTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCAGGCCTCAGTGGGCATATGCCCATAAATGTGTGGAAAAAATGCGTGCAGAATATGCTGGTCATTCTTGATATTCTCGTGCAGCACCCAAACATAAAGGTTGATGATTCTGTGGAACTAGATGAGAATGAAACTAAGAAAGGGGATGACTATGACGGACCCATTCATGTCTGGGGCAACTTAGTTGCTTTCTTAGAAAAAATAGATGCCGAGTTTTTCAAGAGCTTGCAGTGCATTGATCCCCACACACGTGAATATGTTGAGAGACTCAGGGATGAGCCTCAGTTTGTTGTTCTTGCACAGAATGTCCAGGAATATCTTGAAAGCATTGGAGATTTCAAAGCTTCTTCTAAGGTAGCCTTGAAGAGGGTTGAACTCATTTACTACAAACCGCATGAGGTTTATGAAGCAACGAGAAAATTGGCTGAGATGACCGTAGAGGGAGATAATGGAGAGATGAGTGAGGAGTTAAAAGGTTTTGAGGATACAAGAATTCCTGCTCCGTTTGTTGTTACCCCGGAACTTGTGGCGCGGAAACCCACCTTCCCGGAAAATAGCAGGACCTTAATGGATGTGTTAGTATCACTGATATACAAATACGGAGATGAGCGCACTAAAGCACGTGCAATGCTTTGTGATATATATCACCATGCTCTTCTTGATGAGTTTGCAGTCGCCCGTGATCTGTTGCTTATGAGTCATTTGCAAGAAAATGTTCACCACATGGACATTTCGACACAAATACTTTTTAACAGGGCTATGTCACAGTTAGGTCTATGTGCTTTTCGGGTTGGGCTGGTTTCTGAAGCGCATGGCTGTTTGTCTGAACTTTATTCTGGTGGACGGGTGAAGGAATTGCTTGCGCAAGGAGTTTCACAGAGCCGTTATCATGAAAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGGCAGATGCCATATCATATGCATATAAATCTTGAGCTCCTGGAATCAGTGCATCTTACATCTGCTATGCTGCTGGAAGTTCCCAACATGGCAGCCAATGTTCATGATGCTAAGCGTAAGATCATCAGTAAGAATTTCCGCCGCTTCCTTTGA
Protein sequence

>Msa0307860

MASRFWTQGNSDSDDDEPTDIDDEPNDTEPVDDEPNNNTANRYLQTKPVVDDSDDDDGQKRVVKSAKDKRFDEMASTVDQIKNAIKINDWVSLQESFDKINKQLEKVMRVIESQKIPNLYIKALVMLEDFLAQASANKDAKKKMSPSNAKAFNSMKQKLKKNNKQYEDLIIKCRESPESEGEKDDEDEDSDEYETDDEIIEPDQLRKPEPVSDSETSELGNDRPPGDDGDAPWDQKLSKKDRLLEKMFLKKPSEITWDTVNKKFKEILEARGRKGTGRFEQVEQLTFLTKVAKTPAQKLQILFSVVSAQFDVNPGLSGHMPINVWKKCVQNMLVILDILVQHPNIKVDDSVELDENETKKGDDYDGPIHVWGNLVAFLEKIDAEFFKSLQCIDPHTREYVERLRDEPQFVVLAQNVQEYLESIGDFKASSKVALKRVELIYYKPHEVYEATRKLAEMTVEGDNGEMSEELKGFEDTRIPAPFVVTPELVARKPTFPENSRTLMDVLVSLIYKYGDERTKARAMLCDIYHHALLDEFAVARDLLLMSHLQENVHHMDISTQILFNRAMSQLGLCAFRVGLVSEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLTSAMLLEVPNMAANVHDAKRKIISKNFRRFL*