AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0302880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0302880 MtrunA17_Chr2g0329131 98.605 215 3 0 1 215 1 215 2.95e-141 426
Msa0302880 MtrunA17_Chr3g0100131 40.367 109 49 2 124 216 160 268 3.29e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0302880 AT5G13010.1 39.437 213 105 8 11 215 3 199 2.14e-24 101

Find 94 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGGTTTCTGCTTCACCTTC+TGG 0.184399 2_3:+59845592 Msa0302880:intron
ATCGAAGTGGTTATCTCTTT+TGG 0.246931 2_3:-59844032 None:intergenic
GGAGTGAGAGGAGGCATTCT+AGG 0.334669 2_3:+59845635 Msa0302880:CDS
GGTGGTGGACTCTATGTTCC+TGG 0.347404 2_3:+59843312 Msa0302880:CDS
TACCCTTGCCATTGCAAAAC+GGG 0.357929 2_3:+59843977 Msa0302880:CDS
TGTTGAACCCTAGAGATAGA+AGG 0.398376 2_3:-59842957 None:intergenic
ACCGGAGAGAAAATCTCGTT+TGG 0.412360 2_3:+59843359 Msa0302880:CDS
TGGGACCATGGCCGATGGGA+TGG 0.417681 2_3:+59845921 Msa0302880:CDS
AACATCCTTCTTCTCTATTG+TGG 0.448062 2_3:+59842976 Msa0302880:five_prime_UTR
GGCGCGGTGGATAATGAAAC+AGG 0.451322 2_3:-59842914 None:intergenic
TGTTTCTATGTCGGACCTCC+CGG 0.453154 2_3:-59845678 None:intergenic
TATCTGCAGGCAGATCTGAC+TGG 0.457108 2_3:+59845901 Msa0302880:intron
TCAAAGTGATGGGGCATTCA+AGG 0.457886 2_3:+59844007 Msa0302880:CDS
GCAACCTCCCTTCTATCTCT+AGG 0.464996 2_3:+59842949 Msa0302880:five_prime_UTR
CTAGAGACACCGTCCCTTCG+TGG 0.467961 2_3:-59845953 None:intergenic
ATAGCGAGCTGCGACTGCTT+TGG 0.469800 2_3:-59842887 None:intergenic
GGGACCATGGCCGATGGGAT+GGG 0.481496 2_3:+59845922 Msa0302880:CDS
GATATGACAGGGATGATCAT+AGG 0.485230 2_3:+59845614 Msa0302880:CDS
CCGGAGAGAAAATCTCGTTT+GGG 0.489104 2_3:+59843360 Msa0302880:CDS
CAACCTCCCTTCTATCTCTA+GGG 0.490796 2_3:+59842950 Msa0302880:five_prime_UTR
ACCTGCACGTGATGTTTCAC+TGG 0.492086 2_3:-59844162 None:intergenic
GAAACAGATATGAAGGTTCA+AGG 0.492435 2_3:+59845776 Msa0302880:CDS
TGATTCAAGGAGTGACAGCC+GGG 0.493181 2_3:+59845660 Msa0302880:CDS
GGCAGATCTGACTGGGACCA+TGG 0.498478 2_3:+59845909 Msa0302880:intron
TGTATCAGCATGGTGATCTT+CGG 0.501456 2_3:-59844590 None:intergenic
ATCTGCAGGCAGATCTGACT+GGG 0.506501 2_3:+59845902 Msa0302880:intron
CTTCACCTTCTGGATATGAC+AGG 0.506893 2_3:+59845602 Msa0302880:CDS
GAACCGTTCGACTGAGCGTA+GGG 0.512239 2_3:+59844618 Msa0302880:CDS
TCTGATGTTGTTGAGGAAAG+TGG 0.523225 2_3:+59844092 Msa0302880:CDS
TCGTACCACAATAGAGAAGA+AGG 0.524243 2_3:-59842981 None:intergenic
AGAAAGCGAAACAGATATGA+AGG 0.525408 2_3:+59845769 Msa0302880:CDS
ATACCCTTGCCATTGCAAAA+CGG 0.526324 2_3:+59843976 Msa0302880:CDS
ATGATTCAAGGAGTGACAGC+CGG 0.527409 2_3:+59845659 Msa0302880:CDS
CCAGAAAAGTCTACCGGTGG+TGG 0.529130 2_3:+59843297 Msa0302880:CDS
GAGTGAGAGGAGGCATTCTA+GGG 0.531493 2_3:+59845636 Msa0302880:CDS
CAGGAAGGGATTCACGTAGT+AGG 0.532759 2_3:+59845725 Msa0302880:CDS
ATAGAAACAATTATGACAGT+AGG 0.533273 2_3:+59845692 Msa0302880:CDS
GTTGAGGAAAGTGGGCAGGC+AGG 0.533945 2_3:+59844101 Msa0302880:CDS
TGTCATAATTGTTTCTATGT+CGG 0.535891 2_3:-59845687 None:intergenic
GGGGAGAGTCTCAAAGTGAT+GGG 0.538995 2_3:+59843997 Msa0302880:CDS
CGGGGAGAGTCTCAAAGTGA+TGG 0.540637 2_3:+59843996 Msa0302880:CDS
GAAGGTTCAAGGAGAACGCC+TGG 0.540880 2_3:+59845787 Msa0302880:CDS
GGAGGTTGCTGATAGAGATC+CGG 0.542611 2_3:-59842935 None:intergenic
TTTCAGTTGCATCACCGCCA+TGG 0.546863 2_3:+59843123 Msa0302880:exon
TCTTCCCATCCCATCGGCCA+TGG 0.548733 2_3:-59845926 None:intergenic
TAAACCACTCGATCCTTCCC+AGG 0.549553 2_3:-59843330 None:intergenic
CTGACTGGGACCATGGCCGA+TGG 0.552717 2_3:+59845916 Msa0302880:CDS
GGCATTCTAGGGATGATTCA+AGG 0.557334 2_3:+59845647 Msa0302880:CDS
GACAGTAGGGAGTCTTACTC+AGG 0.564012 2_3:+59845706 Msa0302880:CDS
GATCACCATGCTGATACATA+CGG 0.566562 2_3:+59844595 Msa0302880:CDS
GTGGTGGACTCTATGTTCCT+GGG 0.578333 2_3:+59843313 Msa0302880:CDS
TGGACTCTATGTTCCTGGGA+AGG 0.579819 2_3:+59843317 Msa0302880:CDS
AACCCCTACGCTCAGTCGAA+CGG 0.580835 2_3:-59844621 None:intergenic
TAGAAACAATTATGACAGTA+GGG 0.583220 2_3:+59845693 Msa0302880:CDS
GTTGAACCCTAGAGATAGAA+GGG 0.584648 2_3:-59842956 None:intergenic
ACCAGTGAAACATCACGTGC+AGG 0.588847 2_3:+59844161 Msa0302880:CDS
TCGAGTGGTTTACGTGGCAC+CGG 0.596287 2_3:+59843341 Msa0302880:CDS
CTGATGTTGTTGAGGAAAGT+GGG 0.596653 2_3:+59844093 Msa0302880:CDS
ATCACCATGCTGATACATAC+GGG 0.596993 2_3:+59844596 Msa0302880:CDS
GGGATGATCATAGGAGTGAG+AGG 0.597585 2_3:+59845623 Msa0302880:CDS
AAACAAGACTACAATGACGT+TGG 0.608854 2_3:+59843272 Msa0302880:CDS
GGAGTATCTTCCCATCCCAT+CGG 0.620845 2_3:-59845932 None:intergenic
TGCAGCAGCTGCAATCGAAG+TGG 0.623954 2_3:-59844045 None:intergenic
CTGATAGAGATCCGGCGCGG+TGG 0.624254 2_3:-59842927 None:intergenic
TAGGGAGTCTTACTCAGGAA+GGG 0.624659 2_3:+59845711 Msa0302880:CDS
GGAACCGTTCGACTGAGCGT+AGG 0.625394 2_3:+59844617 Msa0302880:CDS
TGACTGGGACCATGGCCGAT+GGG 0.626428 2_3:+59845917 Msa0302880:CDS
TGTTGTTGAGGAAAGTGGGC+AGG 0.627342 2_3:+59844097 Msa0302880:CDS
TGTTTCATTATCCACCGCGC+CGG 0.631925 2_3:+59842916 Msa0302880:five_prime_UTR
CGGTGGATAATGAAACAGGA+TGG 0.632157 2_3:-59842910 None:intergenic
GTAGGGAGTCTTACTCAGGA+AGG 0.640822 2_3:+59845710 Msa0302880:CDS
TTGGAACCAGAAAAGTCTAC+CGG 0.641047 2_3:+59843291 Msa0302880:CDS
ATGGGAAGATACTCCACGAA+GGG 0.645143 2_3:+59845940 Msa0302880:CDS
ACCCTTGCCATTGCAAAACG+GGG 0.647396 2_3:+59843978 Msa0302880:CDS
TTCACCTTCTGGATATGACA+GGG 0.652301 2_3:+59845603 Msa0302880:CDS
TGAGTCCTCTGATGTTGTTG+AGG 0.653134 2_3:+59844085 Msa0302880:CDS
GAAGATACTCCACGAAGGGA+CGG 0.654497 2_3:+59845944 Msa0302880:CDS
ATAGTGATGACTAACCTCCA+TGG 0.654711 2_3:-59843140 None:intergenic
ACTTTCCTCAACAACATCAG+AGG 0.656050 2_3:-59844090 None:intergenic
TGTTCCTGGGAAGGATCGAG+TGG 0.657402 2_3:+59843326 Msa0302880:CDS
TCATCCCTGTCATATCCAGA+AGG 0.671423 2_3:-59845607 None:intergenic
GGGAGAGTCTCAAAGTGATG+GGG 0.678225 2_3:+59843998 Msa0302880:CDS
GGTTCCCGTATGTATCAGCA+TGG 0.680356 2_3:-59844600 None:intergenic
GAAGGATCGAGTGGTTTACG+TGG 0.684126 2_3:+59843335 Msa0302880:CDS
AGGAACATAGAGTCCACCAC+CGG 0.687678 2_3:-59843310 None:intergenic
GAACCAGAAAAGTCTACCGG+TGG 0.696177 2_3:+59843294 Msa0302880:CDS
ATGATCATAGGAGTGAGAGG+AGG 0.696178 2_3:+59845626 Msa0302880:CDS
AACCGTTCGACTGAGCGTAG+GGG 0.696590 2_3:+59844619 Msa0302880:CDS
CAGTTGCATCACCGCCATGG+AGG 0.699224 2_3:+59843126 Msa0302880:exon
TTCAAGGAGTGACAGCCGGG+AGG 0.730682 2_3:+59845663 Msa0302880:CDS
GATGGGAAGATACTCCACGA+AGG 0.748837 2_3:+59845939 Msa0302880:CDS
GAACCCTAGAGATAGAAGGG+AGG 0.759400 2_3:-59842953 None:intergenic
GTGATGACTAACCTCCATGG+CGG 0.770058 2_3:-59843137 None:intergenic
TTGCTGATAGAGATCCGGCG+CGG 0.810191 2_3:-59842930 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGTTTTTTTTTTTTTTTGA+AGG - chr2_3:59842833-59842852 None:intergenic 10.0%
!! AAATATCAAAATTAGAAATA+TGG - chr2_3:59845564-59845583 None:intergenic 10.0%
!!! GGCTTTTTTTTTTTTTTTTT+TGG + chr2_3:59845165-59845184 Msa0302880:intron 15.0%
!!! TTTTGATATTTCAATTTTGA+AGG + chr2_3:59845573-59845592 Msa0302880:intron 15.0%
!! ATTGTTTGTCAATAGAAAAA+TGG + chr2_3:59843225-59843244 Msa0302880:intron 20.0%
!! AGATATTGTGATTAATTAGT+TGG + chr2_3:59843729-59843748 Msa0302880:intron 20.0%
!!! TTGCAATGTTTTACTTATAT+TGG + chr2_3:59843844-59843863 Msa0302880:intron 20.0%
!!! TTATTGTTTGTTTTAACGAA+TGG + chr2_3:59843939-59843958 Msa0302880:intron 20.0%
!! AAATTAGACTAACATGTATA+AGG + chr2_3:59844374-59844393 Msa0302880:intron 20.0%
!! AATTAGACTAACATGTATAA+GGG + chr2_3:59844375-59844394 Msa0302880:intron 20.0%
!!! ATACAACTTTTAGACTTTTA+AGG + chr2_3:59844908-59844927 Msa0302880:intron 20.0%
!!! CAATACAATATTTCTGTATT+TGG + chr2_3:59844949-59844968 Msa0302880:intron 20.0%
!! TAAATTGGAAGATAAAGAAA+AGG + chr2_3:59845097-59845116 Msa0302880:intron 20.0%
!! AAATTGGAAGATAAAGAAAA+GGG + chr2_3:59845098-59845117 Msa0302880:intron 20.0%
!!! TCTTATATGTTTTGAAGAAT+AGG + chr2_3:59845192-59845211 Msa0302880:intron 20.0%
!! TGGTTCTCAATTTTTGAATT+AGG + chr2_3:59843012-59843031 Msa0302880:intron 25.0%
!! GGTTCTCAATTTTTGAATTA+GGG + chr2_3:59843013-59843032 Msa0302880:intron 25.0%
! AGTGATATGATATATGATTG+AGG + chr2_3:59843754-59843773 Msa0302880:intron 25.0%
!!! GTTTTAACGAATGGTTTAAT+AGG + chr2_3:59843948-59843967 Msa0302880:intron 25.0%
!!! TGAATTTTAAGTCCACAATA+TGG - chr2_3:59844322-59844341 None:intergenic 25.0%
! TAAAATTCAAATCCTACTGA+TGG + chr2_3:59844333-59844352 Msa0302880:intron 25.0%
! AAAATTCAAATCCTACTGAT+GGG + chr2_3:59844334-59844353 Msa0302880:intron 25.0%
! AATGGAATTATGGAGTTAAA+GGG - chr2_3:59844671-59844690 None:intergenic 25.0%
! AAATGGAATTATGGAGTTAA+AGG - chr2_3:59844672-59844691 None:intergenic 25.0%
!!! ATTGTTTTTTCTAGAACAGA+AGG - chr2_3:59844700-59844719 None:intergenic 25.0%
! CACTGTAAGCAAAATTAAAT+TGG + chr2_3:59845082-59845101 Msa0302880:intron 25.0%
!!! GAATTTTAACCAATCAAAGA+GGG - chr2_3:59845375-59845394 None:intergenic 25.0%
!!! TGAATTTTAACCAATCAAAG+AGG - chr2_3:59845374-59845393 None:intergenic 25.0%
!! TTGATTGGTTAAAATTCACA+TGG + chr2_3:59845305-59845324 Msa0302880:intron 25.0%
!! TGATTGGTTAAAATTCACAT+GGG + chr2_3:59845306-59845325 Msa0302880:intron 25.0%
!! TGATTGGTTAAAATTCACAT+GGG - chr2_3:59845306-59845325 None:intergenic 25.0%
!! TTGATTGGTTAAAATTCACA+TGG - chr2_3:59845305-59845324 None:intergenic 25.0%
!!! AGCAATATTTTTATGCTTTG+AGG - chr2_3:59845428-59845447 None:intergenic 25.0%
! ATTTATTCATTACACAGACT+AGG - chr2_3:59845454-59845473 None:intergenic 25.0%
! TTGACATTTCAATTTATTCC+TGG + chr2_3:59845492-59845511 Msa0302880:intron 25.0%
!!! TGTCATAATTGTTTCTATGT+CGG - chr2_3:59845690-59845709 None:intergenic 25.0%
! ATAGAAACAATTATGACAGT+AGG + chr2_3:59845692-59845711 Msa0302880:CDS 25.0%
! TAGAAACAATTATGACAGTA+GGG + chr2_3:59845693-59845712 Msa0302880:CDS 25.0%
! TACAATTACAATTACATACC+AGG - chr2_3:59845808-59845827 None:intergenic 25.0%
! GATACATACATGAGATATTA+TGG - chr2_3:59845885-59845904 None:intergenic 25.0%
CTAAGAAGAAGATAGCATAA+TGG - chr2_3:59843183-59843202 None:intergenic 30.0%
AAACTAAGATTAGGTGGTTT+GGG + chr2_3:59843615-59843634 Msa0302880:intron 30.0%
TAGAGAGAAAGTAGATTAGA+TGG + chr2_3:59843642-59843661 Msa0302880:intron 30.0%
! GTTTCTCCTATAGTTTTTCT+AGG - chr2_3:59843700-59843719 None:intergenic 30.0%
TGATATATGATTGAGGATTG+TGG + chr2_3:59843761-59843780 Msa0302880:intron 30.0%
ATGTATAAGGGTAACTGTAA+AGG + chr2_3:59844387-59844406 Msa0302880:intron 30.0%
TCATCATTTCAGACAGATTA+AGG - chr2_3:59844433-59844452 None:intergenic 30.0%
! TTTGTGTGTGTGTTGAATTT+TGG + chr2_3:59844491-59844510 Msa0302880:intron 30.0%
! TGAGTCATGTGTTATTCAAA+TGG + chr2_3:59844815-59844834 Msa0302880:intron 30.0%
! GAGTCATGTGTTATTCAAAT+GGG + chr2_3:59844816-59844835 Msa0302880:intron 30.0%
! TTTCTTATGTCGCTTAGTTA+CGG - chr2_3:59844977-59844996 None:intergenic 30.0%
TGTTAATTGAATCGAAGTGT+TGG + chr2_3:59845038-59845057 Msa0302880:intron 30.0%
AAAAGTAACAGACTGATCTA+GGG - chr2_3:59845141-59845160 None:intergenic 30.0%
TAAAAGTAACAGACTGATCT+AGG - chr2_3:59845142-59845161 None:intergenic 30.0%
!!! ATCAGTCTGTTACTTTTAAG+TGG + chr2_3:59845144-59845163 Msa0302880:intron 30.0%
! AAGAATAGGAAGTATACATC+TGG + chr2_3:59845206-59845225 Msa0302880:intron 30.0%
! AGAATAGGAAGTATACATCT+GGG + chr2_3:59845207-59845226 Msa0302880:intron 30.0%
TTTATCAAGTAAAAACTGCC+AGG - chr2_3:59845513-59845532 None:intergenic 30.0%
!! TTAATCCAAGTATTGAAGAC+AGG + chr2_3:59845854-59845873 Msa0302880:intron 30.0%
ATATTCCTGTCTTCAATACT+TGG - chr2_3:59845862-59845881 None:intergenic 30.0%
AACATCCTTCTTCTCTATTG+TGG + chr2_3:59842976-59842995 Msa0302880:five_prime_UTR 35.0%
! ATTGTGGTACGATTTCGTTT+TGG + chr2_3:59842992-59843011 Msa0302880:intron 35.0%
AAACAAGACTACAATGACGT+TGG + chr2_3:59843272-59843291 Msa0302880:CDS 35.0%
CTACGCTAAAAAAACTGTGT+CGG - chr2_3:59843486-59843505 None:intergenic 35.0%
! CAAAGATGATGATGTTGCAT+TGG + chr2_3:59843506-59843525 Msa0302880:intron 35.0%
ATGACAATGTTAGAGAGAGT+TGG + chr2_3:59843563-59843582 Msa0302880:intron 35.0%
TGACAATGTTAGAGAGAGTT+GGG + chr2_3:59843564-59843583 Msa0302880:intron 35.0%
! TTAGTTTCCACCATCTTTTC+TGG - chr2_3:59843602-59843621 None:intergenic 35.0%
!! AGATGGTGGAAACTAAGATT+AGG + chr2_3:59843606-59843625 Msa0302880:intron 35.0%
GAAACTAAGATTAGGTGGTT+TGG + chr2_3:59843614-59843633 Msa0302880:intron 35.0%
AGAGAAAGTAGATTAGATGG+AGG + chr2_3:59843645-59843664 Msa0302880:intron 35.0%
GAGAAAGTAGATTAGATGGA+GGG + chr2_3:59843646-59843665 Msa0302880:intron 35.0%
AGTCAATTCACTATAGAGAC+AGG + chr2_3:59843670-59843689 Msa0302880:intron 35.0%
GGTAGACCTAGAAAAACTAT+AGG + chr2_3:59843691-59843710 Msa0302880:intron 35.0%
CTAATCCAACTAAGTAGGTT+CGG - chr2_3:59843806-59843825 None:intergenic 35.0%
! ATCGAAGTGGTTATCTCTTT+TGG - chr2_3:59844035-59844054 None:intergenic 35.0%
GCTCGTAACATATTTGCAAA+AGG - chr2_3:59844213-59844232 None:intergenic 35.0%
GCAAATATGTTACGAGCATT+TGG + chr2_3:59844216-59844235 Msa0302880:intron 35.0%
AGAGTACATTTCAACCTTGT+TGG + chr2_3:59844292-59844311 Msa0302880:intron 35.0%
!!! TTTTTCTAGAACAGAAGGCA+CGG - chr2_3:59844695-59844714 None:intergenic 35.0%
! TGCCAGCATGAAGTAAATTT+TGG + chr2_3:59844792-59844811 Msa0302880:intron 35.0%
CACCAAAATTTACTTCATGC+TGG - chr2_3:59844797-59844816 None:intergenic 35.0%
TTCATTAACTAGTGCCCTAT+GGG - chr2_3:59844860-59844879 None:intergenic 35.0%
ATTCATTAACTAGTGCCCTA+TGG - chr2_3:59844861-59844880 None:intergenic 35.0%
ATGTGGGTCCCATATAAATT+TGG - chr2_3:59845336-59845355 None:intergenic 35.0%
TATATGGGACCCACATAATT+TGG + chr2_3:59845340-59845359 Msa0302880:intron 35.0%
AGAAAGCGAAACAGATATGA+AGG + chr2_3:59845769-59845788 Msa0302880:CDS 35.0%
GAAACAGATATGAAGGTTCA+AGG + chr2_3:59845776-59845795 Msa0302880:CDS 35.0%
TATCTCATGTATGTATCTGC+AGG + chr2_3:59845888-59845907 Msa0302880:intron 35.0%
GTTGAACCCTAGAGATAGAA+GGG - chr2_3:59842959-59842978 None:intergenic 40.0%
TGTTGAACCCTAGAGATAGA+AGG - chr2_3:59842960-59842979 None:intergenic 40.0%
TCGTACCACAATAGAGAAGA+AGG - chr2_3:59842984-59843003 None:intergenic 40.0%
ATAGTGATGACTAACCTCCA+TGG - chr2_3:59843143-59843162 None:intergenic 40.0%
TTGGAACCAGAAAAGTCTAC+CGG + chr2_3:59843291-59843310 Msa0302880:CDS 40.0%
TGTGTCTCATACAACATAGC+TGG - chr2_3:59843445-59843464 None:intergenic 40.0%
TGTTGTATGAGACACAGTGT+TGG + chr2_3:59843449-59843468 Msa0302880:intron 40.0%
GTTGTATGAGACACAGTGTT+GGG + chr2_3:59843450-59843469 Msa0302880:intron 40.0%
GGATGTGTAGTAAGACTAGA+CGG + chr2_3:59843527-59843546 Msa0302880:intron 40.0%
GATGTGTAGTAAGACTAGAC+GGG + chr2_3:59843528-59843547 Msa0302880:intron 40.0%
GACAATGTTAGAGAGAGTTG+GGG + chr2_3:59843565-59843584 Msa0302880:intron 40.0%
!! TCCACCATCTTTTCTGGTAT+AGG - chr2_3:59843596-59843615 None:intergenic 40.0%
TGGTGGAAACTAAGATTAGG+TGG + chr2_3:59843609-59843628 Msa0302880:intron 40.0%
CGAACCTACTTAGTTGGATT+AGG + chr2_3:59843804-59843823 Msa0302880:intron 40.0%
CAAGCCTAATCCAACTAAGT+AGG - chr2_3:59843811-59843830 None:intergenic 40.0%
! CTACTTAGTTGGATTAGGCT+TGG + chr2_3:59843809-59843828 Msa0302880:intron 40.0%
ATACCCTTGCCATTGCAAAA+CGG + chr2_3:59843976-59843995 Msa0302880:CDS 40.0%
ACTTTCCTCAACAACATCAG+AGG - chr2_3:59844093-59844112 None:intergenic 40.0%
TCTGATGTTGTTGAGGAAAG+TGG + chr2_3:59844092-59844111 Msa0302880:CDS 40.0%
CTGATGTTGTTGAGGAAAGT+GGG + chr2_3:59844093-59844112 Msa0302880:CDS 40.0%
CACAATATGGACATCCAACA+AGG - chr2_3:59844309-59844328 None:intergenic 40.0%
CTTGTTGGATGTCCATATTG+TGG + chr2_3:59844307-59844326 Msa0302880:intron 40.0%
ATTAACTCATGCCCATCAGT+AGG - chr2_3:59844348-59844367 None:intergenic 40.0%
TGTATCAGCATGGTGATCTT+CGG - chr2_3:59844593-59844612 None:intergenic 40.0%
GATCACCATGCTGATACATA+CGG + chr2_3:59844595-59844614 Msa0302880:CDS 40.0%
ATCACCATGCTGATACATAC+GGG + chr2_3:59844596-59844615 Msa0302880:CDS 40.0%
AAGGCACGGAAATGGAATTA+TGG - chr2_3:59844681-59844700 None:intergenic 40.0%
CAACATAGAGCAGACATGTT+GGG - chr2_3:59845012-59845031 None:intergenic 40.0%
ACAACATAGAGCAGACATGT+TGG - chr2_3:59845013-59845032 None:intergenic 40.0%
!! TTGAATCGAAGTGTTGGACT+TGG + chr2_3:59845044-59845063 Msa0302880:intron 40.0%
!! GGAAGTATACATCTGGGTTT+TGG + chr2_3:59845213-59845232 Msa0302880:intron 40.0%
TTCAACACACCCTCTTTGAT+TGG + chr2_3:59845290-59845309 Msa0302880:intron 40.0%
ATGGGCCCACCAAATTTATA+TGG + chr2_3:59845324-59845343 Msa0302880:intron 40.0%
TGGGCCCACCAAATTTATAT+GGG + chr2_3:59845325-59845344 Msa0302880:intron 40.0%
GGGTCCCATATAAATTTGGT+GGG - chr2_3:59845332-59845351 None:intergenic 40.0%
TGGGTCCCATATAAATTTGG+TGG - chr2_3:59845333-59845352 None:intergenic 40.0%
! ACCAATCAAAGAGTGTGTGT+TGG + chr2_3:59845383-59845402 Msa0302880:intron 40.0%
TCCAACACACACTCTTTGAT+TGG - chr2_3:59845387-59845406 None:intergenic 40.0%
TTCACCTTCTGGATATGACA+GGG + chr2_3:59845603-59845622 Msa0302880:CDS 40.0%
GATATGACAGGGATGATCAT+AGG + chr2_3:59845614-59845633 Msa0302880:CDS 40.0%
CGGTGGATAATGAAACAGGA+TGG - chr2_3:59842913-59842932 None:intergenic 45.0%
CAACCTCCCTTCTATCTCTA+GGG + chr2_3:59842950-59842969 Msa0302880:five_prime_UTR 45.0%
ACCGGAGAGAAAATCTCGTT+TGG + chr2_3:59843359-59843378 Msa0302880:CDS 45.0%
! CCCAAACGAGATTTTCTCTC+CGG - chr2_3:59843363-59843382 None:intergenic 45.0%
CCGGAGAGAAAATCTCGTTT+GGG + chr2_3:59843360-59843379 Msa0302880:CDS 45.0%
! CATACAACATAGCTGGTCTC+TGG - chr2_3:59843438-59843457 None:intergenic 45.0%
GTAGTAAGACTAGACGGGAT+AGG + chr2_3:59843533-59843552 Msa0302880:intron 45.0%
AGCGCCTATACCAGAAAAGA+TGG + chr2_3:59843589-59843608 Msa0302880:intron 45.0%
GCCTATACCAGAAAAGATGG+TGG + chr2_3:59843592-59843611 Msa0302880:intron 45.0%
ACTAAGTAGGTTCGGCTACA+TGG - chr2_3:59843798-59843817 None:intergenic 45.0%
TGTAGCCGAACCTACTTAGT+TGG + chr2_3:59843798-59843817 Msa0302880:intron 45.0%
TACCCTTGCCATTGCAAAAC+GGG + chr2_3:59843977-59843996 Msa0302880:CDS 45.0%
! TCAAAGTGATGGGGCATTCA+AGG + chr2_3:59844007-59844026 Msa0302880:CDS 45.0%
TGAGTCCTCTGATGTTGTTG+AGG + chr2_3:59844085-59844104 Msa0302880:CDS 45.0%
! TAGAACAGAAGGCACGGAAA+TGG - chr2_3:59844689-59844708 None:intergenic 45.0%
TCTTGCTAGCATATGCCCAT+AGG + chr2_3:59844842-59844861 Msa0302880:intron 45.0%
CTTGCTAGCATATGCCCATA+GGG + chr2_3:59844843-59844862 Msa0302880:intron 45.0%
ATGGGACCCACATAATTTGG+TGG + chr2_3:59845343-59845362 Msa0302880:intron 45.0%
TGGGACCCACATAATTTGGT+GGG + chr2_3:59845344-59845363 Msa0302880:intron 45.0%
TGGGTCCCACCAAATTATGT+GGG - chr2_3:59845352-59845371 None:intergenic 45.0%
ATGGGTCCCACCAAATTATG+TGG - chr2_3:59845353-59845372 None:intergenic 45.0%
AAGGTTTCTGCTTCACCTTC+TGG + chr2_3:59845592-59845611 Msa0302880:intron 45.0%
CTTCACCTTCTGGATATGAC+AGG + chr2_3:59845602-59845621 Msa0302880:CDS 45.0%
TCATCCCTGTCATATCCAGA+AGG - chr2_3:59845610-59845629 None:intergenic 45.0%
ATGATCATAGGAGTGAGAGG+AGG + chr2_3:59845626-59845645 Msa0302880:CDS 45.0%
! GGCATTCTAGGGATGATTCA+AGG + chr2_3:59845647-59845666 Msa0302880:CDS 45.0%
ATGATTCAAGGAGTGACAGC+CGG + chr2_3:59845659-59845678 Msa0302880:CDS 45.0%
TAGGGAGTCTTACTCAGGAA+GGG + chr2_3:59845711-59845730 Msa0302880:CDS 45.0%
ATGGGAAGATACTCCACGAA+GGG + chr2_3:59845940-59845959 Msa0302880:CDS 45.0%
TGTTTCATTATCCACCGCGC+CGG + chr2_3:59842916-59842935 Msa0302880:five_prime_UTR 50.0%
GGAGGTTGCTGATAGAGATC+CGG - chr2_3:59842938-59842957 None:intergenic 50.0%
GCAACCTCCCTTCTATCTCT+AGG + chr2_3:59842949-59842968 Msa0302880:five_prime_UTR 50.0%
GAACCCTAGAGATAGAAGGG+AGG - chr2_3:59842956-59842975 None:intergenic 50.0%
TTTCAGTTGCATCACCGCCA+TGG + chr2_3:59843123-59843142 Msa0302880:exon 50.0%
GTGATGACTAACCTCCATGG+CGG - chr2_3:59843140-59843159 None:intergenic 50.0%
GAACCAGAAAAGTCTACCGG+TGG + chr2_3:59843294-59843313 Msa0302880:CDS 50.0%
AGGAACATAGAGTCCACCAC+CGG - chr2_3:59843313-59843332 None:intergenic 50.0%
!! GTGGTGGACTCTATGTTCCT+GGG + chr2_3:59843313-59843332 Msa0302880:CDS 50.0%
TGGACTCTATGTTCCTGGGA+AGG + chr2_3:59843317-59843336 Msa0302880:CDS 50.0%
TAAACCACTCGATCCTTCCC+AGG - chr2_3:59843333-59843352 None:intergenic 50.0%
GAAGGATCGAGTGGTTTACG+TGG + chr2_3:59843335-59843354 Msa0302880:CDS 50.0%
ACCCTTGCCATTGCAAAACG+GGG + chr2_3:59843978-59843997 Msa0302880:CDS 50.0%
! TCCCCGTTTTGCAATGGCAA+GGG - chr2_3:59843982-59844001 None:intergenic 50.0%
! AGACTCTCCCCGTTTTGCAA+TGG - chr2_3:59843988-59844007 None:intergenic 50.0%
GGGGAGAGTCTCAAAGTGAT+GGG + chr2_3:59843997-59844016 Msa0302880:CDS 50.0%
GGGAGAGTCTCAAAGTGATG+GGG + chr2_3:59843998-59844017 Msa0302880:CDS 50.0%
TGTTGTTGAGGAAAGTGGGC+AGG + chr2_3:59844097-59844116 Msa0302880:CDS 50.0%
ACCAGTGAAACATCACGTGC+AGG + chr2_3:59844161-59844180 Msa0302880:CDS 50.0%
ACCTGCACGTGATGTTTCAC+TGG - chr2_3:59844165-59844184 None:intergenic 50.0%
GGTTCCCGTATGTATCAGCA+TGG - chr2_3:59844603-59844622 None:intergenic 50.0%
AGACATGTTGGGAGAGTGGT+GGG - chr2_3:59845001-59845020 None:intergenic 50.0%
GGGATGATCATAGGAGTGAG+AGG + chr2_3:59845623-59845642 Msa0302880:CDS 50.0%
!! GAGTGAGAGGAGGCATTCTA+GGG + chr2_3:59845636-59845655 Msa0302880:CDS 50.0%
TGATTCAAGGAGTGACAGCC+GGG + chr2_3:59845660-59845679 Msa0302880:CDS 50.0%
! TGTTTCTATGTCGGACCTCC+CGG - chr2_3:59845681-59845700 None:intergenic 50.0%
GACAGTAGGGAGTCTTACTC+AGG + chr2_3:59845706-59845725 Msa0302880:CDS 50.0%
GTAGGGAGTCTTACTCAGGA+AGG + chr2_3:59845710-59845729 Msa0302880:CDS 50.0%
CAGGAAGGGATTCACGTAGT+AGG + chr2_3:59845725-59845744 Msa0302880:CDS 50.0%
TATCTGCAGGCAGATCTGAC+TGG + chr2_3:59845901-59845920 Msa0302880:intron 50.0%
ATCTGCAGGCAGATCTGACT+GGG + chr2_3:59845902-59845921 Msa0302880:intron 50.0%
! GGAGTATCTTCCCATCCCAT+CGG - chr2_3:59845935-59845954 None:intergenic 50.0%
GATGGGAAGATACTCCACGA+AGG + chr2_3:59845939-59845958 Msa0302880:CDS 50.0%
GAAGATACTCCACGAAGGGA+CGG + chr2_3:59845944-59845963 Msa0302880:CDS 50.0%
ATAGCGAGCTGCGACTGCTT+TGG - chr2_3:59842890-59842909 None:intergenic 55.0%
GGCGCGGTGGATAATGAAAC+AGG - chr2_3:59842917-59842936 None:intergenic 55.0%
TTGCTGATAGAGATCCGGCG+CGG - chr2_3:59842933-59842952 None:intergenic 55.0%
! CCACCACCGGTAGACTTTTC+TGG - chr2_3:59843300-59843319 None:intergenic 55.0%
CCAGAAAAGTCTACCGGTGG+TGG + chr2_3:59843297-59843316 Msa0302880:CDS 55.0%
!! GGTGGTGGACTCTATGTTCC+TGG + chr2_3:59843312-59843331 Msa0302880:CDS 55.0%
TGTTCCTGGGAAGGATCGAG+TGG + chr2_3:59843326-59843345 Msa0302880:CDS 55.0%
TCGAGTGGTTTACGTGGCAC+CGG + chr2_3:59843341-59843360 Msa0302880:CDS 55.0%
! CTCCCCGTTTTGCAATGGCA+AGG - chr2_3:59843983-59844002 None:intergenic 55.0%
CGGGGAGAGTCTCAAAGTGA+TGG + chr2_3:59843996-59844015 Msa0302880:CDS 55.0%
TGCAGCAGCTGCAATCGAAG+TGG - chr2_3:59844048-59844067 None:intergenic 55.0%
GAACCGTTCGACTGAGCGTA+GGG + chr2_3:59844618-59844637 Msa0302880:CDS 55.0%
AACCGTTCGACTGAGCGTAG+GGG + chr2_3:59844619-59844638 Msa0302880:CDS 55.0%
AACCCCTACGCTCAGTCGAA+CGG - chr2_3:59844624-59844643 None:intergenic 55.0%
CAGACATGTTGGGAGAGTGG+TGG - chr2_3:59845002-59845021 None:intergenic 55.0%
GAGCAGACATGTTGGGAGAG+TGG - chr2_3:59845005-59845024 None:intergenic 55.0%
!! GGAGTGAGAGGAGGCATTCT+AGG + chr2_3:59845635-59845654 Msa0302880:CDS 55.0%
GAAGGTTCAAGGAGAACGCC+TGG + chr2_3:59845787-59845806 Msa0302880:CDS 55.0%
CAGTTGCATCACCGCCATGG+AGG + chr2_3:59843126-59843145 Msa0302880:exon 60.0%
GTTGAGGAAAGTGGGCAGGC+AGG + chr2_3:59844101-59844120 Msa0302880:CDS 60.0%
GGAACCGTTCGACTGAGCGT+AGG + chr2_3:59844617-59844636 Msa0302880:CDS 60.0%
TTCAAGGAGTGACAGCCGGG+AGG + chr2_3:59845663-59845682 Msa0302880:CDS 60.0%
GGCAGATCTGACTGGGACCA+TGG + chr2_3:59845909-59845928 Msa0302880:intron 60.0%
TGACTGGGACCATGGCCGAT+GGG + chr2_3:59845917-59845936 Msa0302880:CDS 60.0%
TCTTCCCATCCCATCGGCCA+TGG - chr2_3:59845929-59845948 None:intergenic 60.0%
CTAGAGACACCGTCCCTTCG+TGG - chr2_3:59845956-59845975 None:intergenic 60.0%
CTGATAGAGATCCGGCGCGG+TGG - chr2_3:59842930-59842949 None:intergenic 65.0%
CTGACTGGGACCATGGCCGA+TGG + chr2_3:59845916-59845935 Msa0302880:CDS 65.0%
TGGGACCATGGCCGATGGGA+TGG + chr2_3:59845921-59845940 Msa0302880:CDS 65.0%
GGGACCATGGCCGATGGGAT+GGG + chr2_3:59845922-59845941 Msa0302880:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 59842796 59845975 59842796 ID=Msa0302880;Name=Msa0302880
chr2_3 mRNA 59842796 59845975 59842796 ID=Msa0302880-mRNA-1;Parent=Msa0302880;Name=Msa0302880-mRNA-1;_AED=0.03;_eAED=0.03;_QI=236|0.83|0.85|0.85|0.66|0.57|7|0|235
chr2_3 exon 59842796 59842997 59842796 ID=Msa0302880-mRNA-1:exon:19448;Parent=Msa0302880-mRNA-1
chr2_3 exon 59843108 59843147 59843108 ID=Msa0302880-mRNA-1:exon:19449;Parent=Msa0302880-mRNA-1
chr2_3 exon 59843240 59843381 59843240 ID=Msa0302880-mRNA-1:exon:19450;Parent=Msa0302880-mRNA-1
chr2_3 exon 59843970 59844182 59843970 ID=Msa0302880-mRNA-1:exon:19451;Parent=Msa0302880-mRNA-1
chr2_3 exon 59844578 59844648 59844578 ID=Msa0302880-mRNA-1:exon:19452;Parent=Msa0302880-mRNA-1
chr2_3 exon 59845595 59845808 59845595 ID=Msa0302880-mRNA-1:exon:19453;Parent=Msa0302880-mRNA-1
chr2_3 exon 59845914 59845975 59845914 ID=Msa0302880-mRNA-1:exon:19454;Parent=Msa0302880-mRNA-1
chr2_3 five_prime_UTR 59842796 59842997 59842796 ID=Msa0302880-mRNA-1:five_prime_utr;Parent=Msa0302880-mRNA-1
chr2_3 five_prime_UTR 59843108 59843141 59843108 ID=Msa0302880-mRNA-1:five_prime_utr;Parent=Msa0302880-mRNA-1
chr2_3 CDS 59843142 59843147 59843142 ID=Msa0302880-mRNA-1:cds;Parent=Msa0302880-mRNA-1
chr2_3 CDS 59843240 59843381 59843240 ID=Msa0302880-mRNA-1:cds;Parent=Msa0302880-mRNA-1
chr2_3 CDS 59843970 59844182 59843970 ID=Msa0302880-mRNA-1:cds;Parent=Msa0302880-mRNA-1
chr2_3 CDS 59844578 59844648 59844578 ID=Msa0302880-mRNA-1:cds;Parent=Msa0302880-mRNA-1
chr2_3 CDS 59845595 59845808 59845595 ID=Msa0302880-mRNA-1:cds;Parent=Msa0302880-mRNA-1
chr2_3 CDS 59845914 59845975 59845914 ID=Msa0302880-mRNA-1:cds;Parent=Msa0302880-mRNA-1
Gene Sequence

>Msa0302880

ATGGAGAAAAATGGTGCTAATGCTGAAATTGTTGACATAAACAAGACTACAATGACGTTGGAACCAGAAAAGTCTACCGGTGGTGGACTCTATGTTCCTGGGAAGGATCGAGTGGTTTACGTGGCACCGGAGAGAAAATCTCGTTTGGGACTTGATACCCTTGCCATTGCAAAACGGGGAGAGTCTCAAAGTGATGGGGCATTCAAGGTGCCAAAAGAGATAACCACTTCGATTGCAGCTGCTGCAGAAGATGAAGATAAGTCTGAGTCCTCTGATGTTGTTGAGGAAAGTGGGCAGGCAGGTACACGCAGACATGCTCATAGAAGATATCGTGAGACAACCAGTGAAACATCACGTGCAGAAAGTTCTCTGACCGAAGATCACCATGCTGATACATACGGGAACCGTTCGACTGAGCGTAGGGGTTCAGATGTTTCTGCTTCACCTTCTGGATATGACAGGGATGATCATAGGAGTGAGAGGAGGCATTCTAGGGATGATTCAAGGAGTGACAGCCGGGAGGTCCGACATAGAAACAATTATGACAGTAGGGAGTCTTACTCAGGAAGGGATTCACGTAGTAGGTATTATGATCATGAATATGATAGAAAGCGAAACAGATATGAAGGTTCAAGGAGAACGCCTGATCTGACTGGGACCATGGCCGATGGGATGGGAAGATACTCCACGAAGGGACGGTGTCTCTAG

Protein sequence

>Msa0302880

MEKNGANAEIVDINKTTMTLEPEKSTGGGLYVPGKDRVVYVAPERKSRLGLDTLAIAKRGESQSDGAFKVPKEITTSIAAAAEDEDKSESSDVVEESGQAGTRRHAHRRYRETTSETSRAESSLTEDHHADTYGNRSTERRGSDVSASPSGYDRDDHRSERRHSRDDSRSDSREVRHRNNYDSRESYSGRDSRSRYYDHEYDRKRNRYEGSRRTPDLTGTMADGMGRYSTKGRCL*