Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0302880 | XP_003597474.1 | 98.605 | 215 | 3 | 0 | 1 | 215 | 1 | 215 | 3.21e-137 | 426 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0302880 | sp|F4K2E9|PRP16_ARATH | 39.437 | 213 | 105 | 8 | 11 | 215 | 3 | 199 | 2.10e-23 | 101 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0302880 | G7IUG0 | 98.605 | 215 | 3 | 0 | 1 | 215 | 1 | 215 | 1.53e-137 | 426 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0116270 | Msa0302880 | 0.803765 | 2.982136e-49 | -8.615850e-47 |
Msa0302880 | Msa0302890 | 0.800251 | 1.572919e-48 | -8.615850e-47 |
Msa0302880 | Msa0423840 | 0.801517 | 8.672509e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0302880 | MtrunA17_Chr2g0329131 | 98.605 | 215 | 3 | 0 | 1 | 215 | 1 | 215 | 2.95e-141 | 426 |
Msa0302880 | MtrunA17_Chr3g0100131 | 40.367 | 109 | 49 | 2 | 124 | 216 | 160 | 268 | 3.29e-13 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0302880 | AT5G13010.1 | 39.437 | 213 | 105 | 8 | 11 | 215 | 3 | 199 | 2.14e-24 | 101 |
Find 94 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGGTTTCTGCTTCACCTTC+TGG | 0.184399 | 2_3:+59845592 | Msa0302880:intron |
ATCGAAGTGGTTATCTCTTT+TGG | 0.246931 | 2_3:-59844032 | None:intergenic |
GGAGTGAGAGGAGGCATTCT+AGG | 0.334669 | 2_3:+59845635 | Msa0302880:CDS |
GGTGGTGGACTCTATGTTCC+TGG | 0.347404 | 2_3:+59843312 | Msa0302880:CDS |
TACCCTTGCCATTGCAAAAC+GGG | 0.357929 | 2_3:+59843977 | Msa0302880:CDS |
TGTTGAACCCTAGAGATAGA+AGG | 0.398376 | 2_3:-59842957 | None:intergenic |
ACCGGAGAGAAAATCTCGTT+TGG | 0.412360 | 2_3:+59843359 | Msa0302880:CDS |
TGGGACCATGGCCGATGGGA+TGG | 0.417681 | 2_3:+59845921 | Msa0302880:CDS |
AACATCCTTCTTCTCTATTG+TGG | 0.448062 | 2_3:+59842976 | Msa0302880:five_prime_UTR |
GGCGCGGTGGATAATGAAAC+AGG | 0.451322 | 2_3:-59842914 | None:intergenic |
TGTTTCTATGTCGGACCTCC+CGG | 0.453154 | 2_3:-59845678 | None:intergenic |
TATCTGCAGGCAGATCTGAC+TGG | 0.457108 | 2_3:+59845901 | Msa0302880:intron |
TCAAAGTGATGGGGCATTCA+AGG | 0.457886 | 2_3:+59844007 | Msa0302880:CDS |
GCAACCTCCCTTCTATCTCT+AGG | 0.464996 | 2_3:+59842949 | Msa0302880:five_prime_UTR |
CTAGAGACACCGTCCCTTCG+TGG | 0.467961 | 2_3:-59845953 | None:intergenic |
ATAGCGAGCTGCGACTGCTT+TGG | 0.469800 | 2_3:-59842887 | None:intergenic |
GGGACCATGGCCGATGGGAT+GGG | 0.481496 | 2_3:+59845922 | Msa0302880:CDS |
GATATGACAGGGATGATCAT+AGG | 0.485230 | 2_3:+59845614 | Msa0302880:CDS |
CCGGAGAGAAAATCTCGTTT+GGG | 0.489104 | 2_3:+59843360 | Msa0302880:CDS |
CAACCTCCCTTCTATCTCTA+GGG | 0.490796 | 2_3:+59842950 | Msa0302880:five_prime_UTR |
ACCTGCACGTGATGTTTCAC+TGG | 0.492086 | 2_3:-59844162 | None:intergenic |
GAAACAGATATGAAGGTTCA+AGG | 0.492435 | 2_3:+59845776 | Msa0302880:CDS |
TGATTCAAGGAGTGACAGCC+GGG | 0.493181 | 2_3:+59845660 | Msa0302880:CDS |
GGCAGATCTGACTGGGACCA+TGG | 0.498478 | 2_3:+59845909 | Msa0302880:intron |
TGTATCAGCATGGTGATCTT+CGG | 0.501456 | 2_3:-59844590 | None:intergenic |
ATCTGCAGGCAGATCTGACT+GGG | 0.506501 | 2_3:+59845902 | Msa0302880:intron |
CTTCACCTTCTGGATATGAC+AGG | 0.506893 | 2_3:+59845602 | Msa0302880:CDS |
GAACCGTTCGACTGAGCGTA+GGG | 0.512239 | 2_3:+59844618 | Msa0302880:CDS |
TCTGATGTTGTTGAGGAAAG+TGG | 0.523225 | 2_3:+59844092 | Msa0302880:CDS |
TCGTACCACAATAGAGAAGA+AGG | 0.524243 | 2_3:-59842981 | None:intergenic |
AGAAAGCGAAACAGATATGA+AGG | 0.525408 | 2_3:+59845769 | Msa0302880:CDS |
ATACCCTTGCCATTGCAAAA+CGG | 0.526324 | 2_3:+59843976 | Msa0302880:CDS |
ATGATTCAAGGAGTGACAGC+CGG | 0.527409 | 2_3:+59845659 | Msa0302880:CDS |
CCAGAAAAGTCTACCGGTGG+TGG | 0.529130 | 2_3:+59843297 | Msa0302880:CDS |
GAGTGAGAGGAGGCATTCTA+GGG | 0.531493 | 2_3:+59845636 | Msa0302880:CDS |
CAGGAAGGGATTCACGTAGT+AGG | 0.532759 | 2_3:+59845725 | Msa0302880:CDS |
ATAGAAACAATTATGACAGT+AGG | 0.533273 | 2_3:+59845692 | Msa0302880:CDS |
GTTGAGGAAAGTGGGCAGGC+AGG | 0.533945 | 2_3:+59844101 | Msa0302880:CDS |
TGTCATAATTGTTTCTATGT+CGG | 0.535891 | 2_3:-59845687 | None:intergenic |
GGGGAGAGTCTCAAAGTGAT+GGG | 0.538995 | 2_3:+59843997 | Msa0302880:CDS |
CGGGGAGAGTCTCAAAGTGA+TGG | 0.540637 | 2_3:+59843996 | Msa0302880:CDS |
GAAGGTTCAAGGAGAACGCC+TGG | 0.540880 | 2_3:+59845787 | Msa0302880:CDS |
GGAGGTTGCTGATAGAGATC+CGG | 0.542611 | 2_3:-59842935 | None:intergenic |
TTTCAGTTGCATCACCGCCA+TGG | 0.546863 | 2_3:+59843123 | Msa0302880:exon |
TCTTCCCATCCCATCGGCCA+TGG | 0.548733 | 2_3:-59845926 | None:intergenic |
TAAACCACTCGATCCTTCCC+AGG | 0.549553 | 2_3:-59843330 | None:intergenic |
CTGACTGGGACCATGGCCGA+TGG | 0.552717 | 2_3:+59845916 | Msa0302880:CDS |
GGCATTCTAGGGATGATTCA+AGG | 0.557334 | 2_3:+59845647 | Msa0302880:CDS |
GACAGTAGGGAGTCTTACTC+AGG | 0.564012 | 2_3:+59845706 | Msa0302880:CDS |
GATCACCATGCTGATACATA+CGG | 0.566562 | 2_3:+59844595 | Msa0302880:CDS |
GTGGTGGACTCTATGTTCCT+GGG | 0.578333 | 2_3:+59843313 | Msa0302880:CDS |
TGGACTCTATGTTCCTGGGA+AGG | 0.579819 | 2_3:+59843317 | Msa0302880:CDS |
AACCCCTACGCTCAGTCGAA+CGG | 0.580835 | 2_3:-59844621 | None:intergenic |
TAGAAACAATTATGACAGTA+GGG | 0.583220 | 2_3:+59845693 | Msa0302880:CDS |
GTTGAACCCTAGAGATAGAA+GGG | 0.584648 | 2_3:-59842956 | None:intergenic |
ACCAGTGAAACATCACGTGC+AGG | 0.588847 | 2_3:+59844161 | Msa0302880:CDS |
TCGAGTGGTTTACGTGGCAC+CGG | 0.596287 | 2_3:+59843341 | Msa0302880:CDS |
CTGATGTTGTTGAGGAAAGT+GGG | 0.596653 | 2_3:+59844093 | Msa0302880:CDS |
ATCACCATGCTGATACATAC+GGG | 0.596993 | 2_3:+59844596 | Msa0302880:CDS |
GGGATGATCATAGGAGTGAG+AGG | 0.597585 | 2_3:+59845623 | Msa0302880:CDS |
AAACAAGACTACAATGACGT+TGG | 0.608854 | 2_3:+59843272 | Msa0302880:CDS |
GGAGTATCTTCCCATCCCAT+CGG | 0.620845 | 2_3:-59845932 | None:intergenic |
TGCAGCAGCTGCAATCGAAG+TGG | 0.623954 | 2_3:-59844045 | None:intergenic |
CTGATAGAGATCCGGCGCGG+TGG | 0.624254 | 2_3:-59842927 | None:intergenic |
TAGGGAGTCTTACTCAGGAA+GGG | 0.624659 | 2_3:+59845711 | Msa0302880:CDS |
GGAACCGTTCGACTGAGCGT+AGG | 0.625394 | 2_3:+59844617 | Msa0302880:CDS |
TGACTGGGACCATGGCCGAT+GGG | 0.626428 | 2_3:+59845917 | Msa0302880:CDS |
TGTTGTTGAGGAAAGTGGGC+AGG | 0.627342 | 2_3:+59844097 | Msa0302880:CDS |
TGTTTCATTATCCACCGCGC+CGG | 0.631925 | 2_3:+59842916 | Msa0302880:five_prime_UTR |
CGGTGGATAATGAAACAGGA+TGG | 0.632157 | 2_3:-59842910 | None:intergenic |
GTAGGGAGTCTTACTCAGGA+AGG | 0.640822 | 2_3:+59845710 | Msa0302880:CDS |
TTGGAACCAGAAAAGTCTAC+CGG | 0.641047 | 2_3:+59843291 | Msa0302880:CDS |
ATGGGAAGATACTCCACGAA+GGG | 0.645143 | 2_3:+59845940 | Msa0302880:CDS |
ACCCTTGCCATTGCAAAACG+GGG | 0.647396 | 2_3:+59843978 | Msa0302880:CDS |
TTCACCTTCTGGATATGACA+GGG | 0.652301 | 2_3:+59845603 | Msa0302880:CDS |
TGAGTCCTCTGATGTTGTTG+AGG | 0.653134 | 2_3:+59844085 | Msa0302880:CDS |
GAAGATACTCCACGAAGGGA+CGG | 0.654497 | 2_3:+59845944 | Msa0302880:CDS |
ATAGTGATGACTAACCTCCA+TGG | 0.654711 | 2_3:-59843140 | None:intergenic |
ACTTTCCTCAACAACATCAG+AGG | 0.656050 | 2_3:-59844090 | None:intergenic |
TGTTCCTGGGAAGGATCGAG+TGG | 0.657402 | 2_3:+59843326 | Msa0302880:CDS |
TCATCCCTGTCATATCCAGA+AGG | 0.671423 | 2_3:-59845607 | None:intergenic |
GGGAGAGTCTCAAAGTGATG+GGG | 0.678225 | 2_3:+59843998 | Msa0302880:CDS |
GGTTCCCGTATGTATCAGCA+TGG | 0.680356 | 2_3:-59844600 | None:intergenic |
GAAGGATCGAGTGGTTTACG+TGG | 0.684126 | 2_3:+59843335 | Msa0302880:CDS |
AGGAACATAGAGTCCACCAC+CGG | 0.687678 | 2_3:-59843310 | None:intergenic |
GAACCAGAAAAGTCTACCGG+TGG | 0.696177 | 2_3:+59843294 | Msa0302880:CDS |
ATGATCATAGGAGTGAGAGG+AGG | 0.696178 | 2_3:+59845626 | Msa0302880:CDS |
AACCGTTCGACTGAGCGTAG+GGG | 0.696590 | 2_3:+59844619 | Msa0302880:CDS |
CAGTTGCATCACCGCCATGG+AGG | 0.699224 | 2_3:+59843126 | Msa0302880:exon |
TTCAAGGAGTGACAGCCGGG+AGG | 0.730682 | 2_3:+59845663 | Msa0302880:CDS |
GATGGGAAGATACTCCACGA+AGG | 0.748837 | 2_3:+59845939 | Msa0302880:CDS |
GAACCCTAGAGATAGAAGGG+AGG | 0.759400 | 2_3:-59842953 | None:intergenic |
GTGATGACTAACCTCCATGG+CGG | 0.770058 | 2_3:-59843137 | None:intergenic |
TTGCTGATAGAGATCCGGCG+CGG | 0.810191 | 2_3:-59842930 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAGTTTTTTTTTTTTTTTGA+AGG | - | chr2_3:59842833-59842852 | None:intergenic | 10.0% |
!! | AAATATCAAAATTAGAAATA+TGG | - | chr2_3:59845564-59845583 | None:intergenic | 10.0% |
!!! | GGCTTTTTTTTTTTTTTTTT+TGG | + | chr2_3:59845165-59845184 | Msa0302880:intron | 15.0% |
!!! | TTTTGATATTTCAATTTTGA+AGG | + | chr2_3:59845573-59845592 | Msa0302880:intron | 15.0% |
!! | ATTGTTTGTCAATAGAAAAA+TGG | + | chr2_3:59843225-59843244 | Msa0302880:intron | 20.0% |
!! | AGATATTGTGATTAATTAGT+TGG | + | chr2_3:59843729-59843748 | Msa0302880:intron | 20.0% |
!!! | TTGCAATGTTTTACTTATAT+TGG | + | chr2_3:59843844-59843863 | Msa0302880:intron | 20.0% |
!!! | TTATTGTTTGTTTTAACGAA+TGG | + | chr2_3:59843939-59843958 | Msa0302880:intron | 20.0% |
!! | AAATTAGACTAACATGTATA+AGG | + | chr2_3:59844374-59844393 | Msa0302880:intron | 20.0% |
!! | AATTAGACTAACATGTATAA+GGG | + | chr2_3:59844375-59844394 | Msa0302880:intron | 20.0% |
!!! | ATACAACTTTTAGACTTTTA+AGG | + | chr2_3:59844908-59844927 | Msa0302880:intron | 20.0% |
!!! | CAATACAATATTTCTGTATT+TGG | + | chr2_3:59844949-59844968 | Msa0302880:intron | 20.0% |
!! | TAAATTGGAAGATAAAGAAA+AGG | + | chr2_3:59845097-59845116 | Msa0302880:intron | 20.0% |
!! | AAATTGGAAGATAAAGAAAA+GGG | + | chr2_3:59845098-59845117 | Msa0302880:intron | 20.0% |
!!! | TCTTATATGTTTTGAAGAAT+AGG | + | chr2_3:59845192-59845211 | Msa0302880:intron | 20.0% |
!! | TGGTTCTCAATTTTTGAATT+AGG | + | chr2_3:59843012-59843031 | Msa0302880:intron | 25.0% |
!! | GGTTCTCAATTTTTGAATTA+GGG | + | chr2_3:59843013-59843032 | Msa0302880:intron | 25.0% |
! | AGTGATATGATATATGATTG+AGG | + | chr2_3:59843754-59843773 | Msa0302880:intron | 25.0% |
!!! | GTTTTAACGAATGGTTTAAT+AGG | + | chr2_3:59843948-59843967 | Msa0302880:intron | 25.0% |
!!! | TGAATTTTAAGTCCACAATA+TGG | - | chr2_3:59844322-59844341 | None:intergenic | 25.0% |
! | TAAAATTCAAATCCTACTGA+TGG | + | chr2_3:59844333-59844352 | Msa0302880:intron | 25.0% |
! | AAAATTCAAATCCTACTGAT+GGG | + | chr2_3:59844334-59844353 | Msa0302880:intron | 25.0% |
! | AATGGAATTATGGAGTTAAA+GGG | - | chr2_3:59844671-59844690 | None:intergenic | 25.0% |
! | AAATGGAATTATGGAGTTAA+AGG | - | chr2_3:59844672-59844691 | None:intergenic | 25.0% |
!!! | ATTGTTTTTTCTAGAACAGA+AGG | - | chr2_3:59844700-59844719 | None:intergenic | 25.0% |
! | CACTGTAAGCAAAATTAAAT+TGG | + | chr2_3:59845082-59845101 | Msa0302880:intron | 25.0% |
!!! | GAATTTTAACCAATCAAAGA+GGG | - | chr2_3:59845375-59845394 | None:intergenic | 25.0% |
!!! | TGAATTTTAACCAATCAAAG+AGG | - | chr2_3:59845374-59845393 | None:intergenic | 25.0% |
!! | TTGATTGGTTAAAATTCACA+TGG | + | chr2_3:59845305-59845324 | Msa0302880:intron | 25.0% |
!! | TGATTGGTTAAAATTCACAT+GGG | + | chr2_3:59845306-59845325 | Msa0302880:intron | 25.0% |
!! | TGATTGGTTAAAATTCACAT+GGG | - | chr2_3:59845306-59845325 | None:intergenic | 25.0% |
!! | TTGATTGGTTAAAATTCACA+TGG | - | chr2_3:59845305-59845324 | None:intergenic | 25.0% |
!!! | AGCAATATTTTTATGCTTTG+AGG | - | chr2_3:59845428-59845447 | None:intergenic | 25.0% |
! | ATTTATTCATTACACAGACT+AGG | - | chr2_3:59845454-59845473 | None:intergenic | 25.0% |
! | TTGACATTTCAATTTATTCC+TGG | + | chr2_3:59845492-59845511 | Msa0302880:intron | 25.0% |
!!! | TGTCATAATTGTTTCTATGT+CGG | - | chr2_3:59845690-59845709 | None:intergenic | 25.0% |
! | ATAGAAACAATTATGACAGT+AGG | + | chr2_3:59845692-59845711 | Msa0302880:CDS | 25.0% |
! | TAGAAACAATTATGACAGTA+GGG | + | chr2_3:59845693-59845712 | Msa0302880:CDS | 25.0% |
! | TACAATTACAATTACATACC+AGG | - | chr2_3:59845808-59845827 | None:intergenic | 25.0% |
! | GATACATACATGAGATATTA+TGG | - | chr2_3:59845885-59845904 | None:intergenic | 25.0% |
CTAAGAAGAAGATAGCATAA+TGG | - | chr2_3:59843183-59843202 | None:intergenic | 30.0% | |
AAACTAAGATTAGGTGGTTT+GGG | + | chr2_3:59843615-59843634 | Msa0302880:intron | 30.0% | |
TAGAGAGAAAGTAGATTAGA+TGG | + | chr2_3:59843642-59843661 | Msa0302880:intron | 30.0% | |
! | GTTTCTCCTATAGTTTTTCT+AGG | - | chr2_3:59843700-59843719 | None:intergenic | 30.0% |
TGATATATGATTGAGGATTG+TGG | + | chr2_3:59843761-59843780 | Msa0302880:intron | 30.0% | |
ATGTATAAGGGTAACTGTAA+AGG | + | chr2_3:59844387-59844406 | Msa0302880:intron | 30.0% | |
TCATCATTTCAGACAGATTA+AGG | - | chr2_3:59844433-59844452 | None:intergenic | 30.0% | |
! | TTTGTGTGTGTGTTGAATTT+TGG | + | chr2_3:59844491-59844510 | Msa0302880:intron | 30.0% |
! | TGAGTCATGTGTTATTCAAA+TGG | + | chr2_3:59844815-59844834 | Msa0302880:intron | 30.0% |
! | GAGTCATGTGTTATTCAAAT+GGG | + | chr2_3:59844816-59844835 | Msa0302880:intron | 30.0% |
! | TTTCTTATGTCGCTTAGTTA+CGG | - | chr2_3:59844977-59844996 | None:intergenic | 30.0% |
TGTTAATTGAATCGAAGTGT+TGG | + | chr2_3:59845038-59845057 | Msa0302880:intron | 30.0% | |
AAAAGTAACAGACTGATCTA+GGG | - | chr2_3:59845141-59845160 | None:intergenic | 30.0% | |
TAAAAGTAACAGACTGATCT+AGG | - | chr2_3:59845142-59845161 | None:intergenic | 30.0% | |
!!! | ATCAGTCTGTTACTTTTAAG+TGG | + | chr2_3:59845144-59845163 | Msa0302880:intron | 30.0% |
! | AAGAATAGGAAGTATACATC+TGG | + | chr2_3:59845206-59845225 | Msa0302880:intron | 30.0% |
! | AGAATAGGAAGTATACATCT+GGG | + | chr2_3:59845207-59845226 | Msa0302880:intron | 30.0% |
TTTATCAAGTAAAAACTGCC+AGG | - | chr2_3:59845513-59845532 | None:intergenic | 30.0% | |
!! | TTAATCCAAGTATTGAAGAC+AGG | + | chr2_3:59845854-59845873 | Msa0302880:intron | 30.0% |
ATATTCCTGTCTTCAATACT+TGG | - | chr2_3:59845862-59845881 | None:intergenic | 30.0% | |
AACATCCTTCTTCTCTATTG+TGG | + | chr2_3:59842976-59842995 | Msa0302880:five_prime_UTR | 35.0% | |
! | ATTGTGGTACGATTTCGTTT+TGG | + | chr2_3:59842992-59843011 | Msa0302880:intron | 35.0% |
AAACAAGACTACAATGACGT+TGG | + | chr2_3:59843272-59843291 | Msa0302880:CDS | 35.0% | |
CTACGCTAAAAAAACTGTGT+CGG | - | chr2_3:59843486-59843505 | None:intergenic | 35.0% | |
! | CAAAGATGATGATGTTGCAT+TGG | + | chr2_3:59843506-59843525 | Msa0302880:intron | 35.0% |
ATGACAATGTTAGAGAGAGT+TGG | + | chr2_3:59843563-59843582 | Msa0302880:intron | 35.0% | |
TGACAATGTTAGAGAGAGTT+GGG | + | chr2_3:59843564-59843583 | Msa0302880:intron | 35.0% | |
! | TTAGTTTCCACCATCTTTTC+TGG | - | chr2_3:59843602-59843621 | None:intergenic | 35.0% |
!! | AGATGGTGGAAACTAAGATT+AGG | + | chr2_3:59843606-59843625 | Msa0302880:intron | 35.0% |
GAAACTAAGATTAGGTGGTT+TGG | + | chr2_3:59843614-59843633 | Msa0302880:intron | 35.0% | |
AGAGAAAGTAGATTAGATGG+AGG | + | chr2_3:59843645-59843664 | Msa0302880:intron | 35.0% | |
GAGAAAGTAGATTAGATGGA+GGG | + | chr2_3:59843646-59843665 | Msa0302880:intron | 35.0% | |
AGTCAATTCACTATAGAGAC+AGG | + | chr2_3:59843670-59843689 | Msa0302880:intron | 35.0% | |
GGTAGACCTAGAAAAACTAT+AGG | + | chr2_3:59843691-59843710 | Msa0302880:intron | 35.0% | |
CTAATCCAACTAAGTAGGTT+CGG | - | chr2_3:59843806-59843825 | None:intergenic | 35.0% | |
! | ATCGAAGTGGTTATCTCTTT+TGG | - | chr2_3:59844035-59844054 | None:intergenic | 35.0% |
GCTCGTAACATATTTGCAAA+AGG | - | chr2_3:59844213-59844232 | None:intergenic | 35.0% | |
GCAAATATGTTACGAGCATT+TGG | + | chr2_3:59844216-59844235 | Msa0302880:intron | 35.0% | |
AGAGTACATTTCAACCTTGT+TGG | + | chr2_3:59844292-59844311 | Msa0302880:intron | 35.0% | |
!!! | TTTTTCTAGAACAGAAGGCA+CGG | - | chr2_3:59844695-59844714 | None:intergenic | 35.0% |
! | TGCCAGCATGAAGTAAATTT+TGG | + | chr2_3:59844792-59844811 | Msa0302880:intron | 35.0% |
CACCAAAATTTACTTCATGC+TGG | - | chr2_3:59844797-59844816 | None:intergenic | 35.0% | |
TTCATTAACTAGTGCCCTAT+GGG | - | chr2_3:59844860-59844879 | None:intergenic | 35.0% | |
ATTCATTAACTAGTGCCCTA+TGG | - | chr2_3:59844861-59844880 | None:intergenic | 35.0% | |
ATGTGGGTCCCATATAAATT+TGG | - | chr2_3:59845336-59845355 | None:intergenic | 35.0% | |
TATATGGGACCCACATAATT+TGG | + | chr2_3:59845340-59845359 | Msa0302880:intron | 35.0% | |
AGAAAGCGAAACAGATATGA+AGG | + | chr2_3:59845769-59845788 | Msa0302880:CDS | 35.0% | |
GAAACAGATATGAAGGTTCA+AGG | + | chr2_3:59845776-59845795 | Msa0302880:CDS | 35.0% | |
TATCTCATGTATGTATCTGC+AGG | + | chr2_3:59845888-59845907 | Msa0302880:intron | 35.0% | |
GTTGAACCCTAGAGATAGAA+GGG | - | chr2_3:59842959-59842978 | None:intergenic | 40.0% | |
TGTTGAACCCTAGAGATAGA+AGG | - | chr2_3:59842960-59842979 | None:intergenic | 40.0% | |
TCGTACCACAATAGAGAAGA+AGG | - | chr2_3:59842984-59843003 | None:intergenic | 40.0% | |
ATAGTGATGACTAACCTCCA+TGG | - | chr2_3:59843143-59843162 | None:intergenic | 40.0% | |
TTGGAACCAGAAAAGTCTAC+CGG | + | chr2_3:59843291-59843310 | Msa0302880:CDS | 40.0% | |
TGTGTCTCATACAACATAGC+TGG | - | chr2_3:59843445-59843464 | None:intergenic | 40.0% | |
TGTTGTATGAGACACAGTGT+TGG | + | chr2_3:59843449-59843468 | Msa0302880:intron | 40.0% | |
GTTGTATGAGACACAGTGTT+GGG | + | chr2_3:59843450-59843469 | Msa0302880:intron | 40.0% | |
GGATGTGTAGTAAGACTAGA+CGG | + | chr2_3:59843527-59843546 | Msa0302880:intron | 40.0% | |
GATGTGTAGTAAGACTAGAC+GGG | + | chr2_3:59843528-59843547 | Msa0302880:intron | 40.0% | |
GACAATGTTAGAGAGAGTTG+GGG | + | chr2_3:59843565-59843584 | Msa0302880:intron | 40.0% | |
!! | TCCACCATCTTTTCTGGTAT+AGG | - | chr2_3:59843596-59843615 | None:intergenic | 40.0% |
TGGTGGAAACTAAGATTAGG+TGG | + | chr2_3:59843609-59843628 | Msa0302880:intron | 40.0% | |
CGAACCTACTTAGTTGGATT+AGG | + | chr2_3:59843804-59843823 | Msa0302880:intron | 40.0% | |
CAAGCCTAATCCAACTAAGT+AGG | - | chr2_3:59843811-59843830 | None:intergenic | 40.0% | |
! | CTACTTAGTTGGATTAGGCT+TGG | + | chr2_3:59843809-59843828 | Msa0302880:intron | 40.0% |
ATACCCTTGCCATTGCAAAA+CGG | + | chr2_3:59843976-59843995 | Msa0302880:CDS | 40.0% | |
ACTTTCCTCAACAACATCAG+AGG | - | chr2_3:59844093-59844112 | None:intergenic | 40.0% | |
TCTGATGTTGTTGAGGAAAG+TGG | + | chr2_3:59844092-59844111 | Msa0302880:CDS | 40.0% | |
CTGATGTTGTTGAGGAAAGT+GGG | + | chr2_3:59844093-59844112 | Msa0302880:CDS | 40.0% | |
CACAATATGGACATCCAACA+AGG | - | chr2_3:59844309-59844328 | None:intergenic | 40.0% | |
CTTGTTGGATGTCCATATTG+TGG | + | chr2_3:59844307-59844326 | Msa0302880:intron | 40.0% | |
ATTAACTCATGCCCATCAGT+AGG | - | chr2_3:59844348-59844367 | None:intergenic | 40.0% | |
TGTATCAGCATGGTGATCTT+CGG | - | chr2_3:59844593-59844612 | None:intergenic | 40.0% | |
GATCACCATGCTGATACATA+CGG | + | chr2_3:59844595-59844614 | Msa0302880:CDS | 40.0% | |
ATCACCATGCTGATACATAC+GGG | + | chr2_3:59844596-59844615 | Msa0302880:CDS | 40.0% | |
AAGGCACGGAAATGGAATTA+TGG | - | chr2_3:59844681-59844700 | None:intergenic | 40.0% | |
CAACATAGAGCAGACATGTT+GGG | - | chr2_3:59845012-59845031 | None:intergenic | 40.0% | |
ACAACATAGAGCAGACATGT+TGG | - | chr2_3:59845013-59845032 | None:intergenic | 40.0% | |
!! | TTGAATCGAAGTGTTGGACT+TGG | + | chr2_3:59845044-59845063 | Msa0302880:intron | 40.0% |
!! | GGAAGTATACATCTGGGTTT+TGG | + | chr2_3:59845213-59845232 | Msa0302880:intron | 40.0% |
TTCAACACACCCTCTTTGAT+TGG | + | chr2_3:59845290-59845309 | Msa0302880:intron | 40.0% | |
ATGGGCCCACCAAATTTATA+TGG | + | chr2_3:59845324-59845343 | Msa0302880:intron | 40.0% | |
TGGGCCCACCAAATTTATAT+GGG | + | chr2_3:59845325-59845344 | Msa0302880:intron | 40.0% | |
GGGTCCCATATAAATTTGGT+GGG | - | chr2_3:59845332-59845351 | None:intergenic | 40.0% | |
TGGGTCCCATATAAATTTGG+TGG | - | chr2_3:59845333-59845352 | None:intergenic | 40.0% | |
! | ACCAATCAAAGAGTGTGTGT+TGG | + | chr2_3:59845383-59845402 | Msa0302880:intron | 40.0% |
TCCAACACACACTCTTTGAT+TGG | - | chr2_3:59845387-59845406 | None:intergenic | 40.0% | |
TTCACCTTCTGGATATGACA+GGG | + | chr2_3:59845603-59845622 | Msa0302880:CDS | 40.0% | |
GATATGACAGGGATGATCAT+AGG | + | chr2_3:59845614-59845633 | Msa0302880:CDS | 40.0% | |
CGGTGGATAATGAAACAGGA+TGG | - | chr2_3:59842913-59842932 | None:intergenic | 45.0% | |
CAACCTCCCTTCTATCTCTA+GGG | + | chr2_3:59842950-59842969 | Msa0302880:five_prime_UTR | 45.0% | |
ACCGGAGAGAAAATCTCGTT+TGG | + | chr2_3:59843359-59843378 | Msa0302880:CDS | 45.0% | |
! | CCCAAACGAGATTTTCTCTC+CGG | - | chr2_3:59843363-59843382 | None:intergenic | 45.0% |
CCGGAGAGAAAATCTCGTTT+GGG | + | chr2_3:59843360-59843379 | Msa0302880:CDS | 45.0% | |
! | CATACAACATAGCTGGTCTC+TGG | - | chr2_3:59843438-59843457 | None:intergenic | 45.0% |
GTAGTAAGACTAGACGGGAT+AGG | + | chr2_3:59843533-59843552 | Msa0302880:intron | 45.0% | |
AGCGCCTATACCAGAAAAGA+TGG | + | chr2_3:59843589-59843608 | Msa0302880:intron | 45.0% | |
GCCTATACCAGAAAAGATGG+TGG | + | chr2_3:59843592-59843611 | Msa0302880:intron | 45.0% | |
ACTAAGTAGGTTCGGCTACA+TGG | - | chr2_3:59843798-59843817 | None:intergenic | 45.0% | |
TGTAGCCGAACCTACTTAGT+TGG | + | chr2_3:59843798-59843817 | Msa0302880:intron | 45.0% | |
TACCCTTGCCATTGCAAAAC+GGG | + | chr2_3:59843977-59843996 | Msa0302880:CDS | 45.0% | |
! | TCAAAGTGATGGGGCATTCA+AGG | + | chr2_3:59844007-59844026 | Msa0302880:CDS | 45.0% |
TGAGTCCTCTGATGTTGTTG+AGG | + | chr2_3:59844085-59844104 | Msa0302880:CDS | 45.0% | |
! | TAGAACAGAAGGCACGGAAA+TGG | - | chr2_3:59844689-59844708 | None:intergenic | 45.0% |
TCTTGCTAGCATATGCCCAT+AGG | + | chr2_3:59844842-59844861 | Msa0302880:intron | 45.0% | |
CTTGCTAGCATATGCCCATA+GGG | + | chr2_3:59844843-59844862 | Msa0302880:intron | 45.0% | |
ATGGGACCCACATAATTTGG+TGG | + | chr2_3:59845343-59845362 | Msa0302880:intron | 45.0% | |
TGGGACCCACATAATTTGGT+GGG | + | chr2_3:59845344-59845363 | Msa0302880:intron | 45.0% | |
TGGGTCCCACCAAATTATGT+GGG | - | chr2_3:59845352-59845371 | None:intergenic | 45.0% | |
ATGGGTCCCACCAAATTATG+TGG | - | chr2_3:59845353-59845372 | None:intergenic | 45.0% | |
AAGGTTTCTGCTTCACCTTC+TGG | + | chr2_3:59845592-59845611 | Msa0302880:intron | 45.0% | |
CTTCACCTTCTGGATATGAC+AGG | + | chr2_3:59845602-59845621 | Msa0302880:CDS | 45.0% | |
TCATCCCTGTCATATCCAGA+AGG | - | chr2_3:59845610-59845629 | None:intergenic | 45.0% | |
ATGATCATAGGAGTGAGAGG+AGG | + | chr2_3:59845626-59845645 | Msa0302880:CDS | 45.0% | |
! | GGCATTCTAGGGATGATTCA+AGG | + | chr2_3:59845647-59845666 | Msa0302880:CDS | 45.0% |
ATGATTCAAGGAGTGACAGC+CGG | + | chr2_3:59845659-59845678 | Msa0302880:CDS | 45.0% | |
TAGGGAGTCTTACTCAGGAA+GGG | + | chr2_3:59845711-59845730 | Msa0302880:CDS | 45.0% | |
ATGGGAAGATACTCCACGAA+GGG | + | chr2_3:59845940-59845959 | Msa0302880:CDS | 45.0% | |
TGTTTCATTATCCACCGCGC+CGG | + | chr2_3:59842916-59842935 | Msa0302880:five_prime_UTR | 50.0% | |
GGAGGTTGCTGATAGAGATC+CGG | - | chr2_3:59842938-59842957 | None:intergenic | 50.0% | |
GCAACCTCCCTTCTATCTCT+AGG | + | chr2_3:59842949-59842968 | Msa0302880:five_prime_UTR | 50.0% | |
GAACCCTAGAGATAGAAGGG+AGG | - | chr2_3:59842956-59842975 | None:intergenic | 50.0% | |
TTTCAGTTGCATCACCGCCA+TGG | + | chr2_3:59843123-59843142 | Msa0302880:exon | 50.0% | |
GTGATGACTAACCTCCATGG+CGG | - | chr2_3:59843140-59843159 | None:intergenic | 50.0% | |
GAACCAGAAAAGTCTACCGG+TGG | + | chr2_3:59843294-59843313 | Msa0302880:CDS | 50.0% | |
AGGAACATAGAGTCCACCAC+CGG | - | chr2_3:59843313-59843332 | None:intergenic | 50.0% | |
!! | GTGGTGGACTCTATGTTCCT+GGG | + | chr2_3:59843313-59843332 | Msa0302880:CDS | 50.0% |
TGGACTCTATGTTCCTGGGA+AGG | + | chr2_3:59843317-59843336 | Msa0302880:CDS | 50.0% | |
TAAACCACTCGATCCTTCCC+AGG | - | chr2_3:59843333-59843352 | None:intergenic | 50.0% | |
GAAGGATCGAGTGGTTTACG+TGG | + | chr2_3:59843335-59843354 | Msa0302880:CDS | 50.0% | |
ACCCTTGCCATTGCAAAACG+GGG | + | chr2_3:59843978-59843997 | Msa0302880:CDS | 50.0% | |
! | TCCCCGTTTTGCAATGGCAA+GGG | - | chr2_3:59843982-59844001 | None:intergenic | 50.0% |
! | AGACTCTCCCCGTTTTGCAA+TGG | - | chr2_3:59843988-59844007 | None:intergenic | 50.0% |
GGGGAGAGTCTCAAAGTGAT+GGG | + | chr2_3:59843997-59844016 | Msa0302880:CDS | 50.0% | |
GGGAGAGTCTCAAAGTGATG+GGG | + | chr2_3:59843998-59844017 | Msa0302880:CDS | 50.0% | |
TGTTGTTGAGGAAAGTGGGC+AGG | + | chr2_3:59844097-59844116 | Msa0302880:CDS | 50.0% | |
ACCAGTGAAACATCACGTGC+AGG | + | chr2_3:59844161-59844180 | Msa0302880:CDS | 50.0% | |
ACCTGCACGTGATGTTTCAC+TGG | - | chr2_3:59844165-59844184 | None:intergenic | 50.0% | |
GGTTCCCGTATGTATCAGCA+TGG | - | chr2_3:59844603-59844622 | None:intergenic | 50.0% | |
AGACATGTTGGGAGAGTGGT+GGG | - | chr2_3:59845001-59845020 | None:intergenic | 50.0% | |
GGGATGATCATAGGAGTGAG+AGG | + | chr2_3:59845623-59845642 | Msa0302880:CDS | 50.0% | |
!! | GAGTGAGAGGAGGCATTCTA+GGG | + | chr2_3:59845636-59845655 | Msa0302880:CDS | 50.0% |
TGATTCAAGGAGTGACAGCC+GGG | + | chr2_3:59845660-59845679 | Msa0302880:CDS | 50.0% | |
! | TGTTTCTATGTCGGACCTCC+CGG | - | chr2_3:59845681-59845700 | None:intergenic | 50.0% |
GACAGTAGGGAGTCTTACTC+AGG | + | chr2_3:59845706-59845725 | Msa0302880:CDS | 50.0% | |
GTAGGGAGTCTTACTCAGGA+AGG | + | chr2_3:59845710-59845729 | Msa0302880:CDS | 50.0% | |
CAGGAAGGGATTCACGTAGT+AGG | + | chr2_3:59845725-59845744 | Msa0302880:CDS | 50.0% | |
TATCTGCAGGCAGATCTGAC+TGG | + | chr2_3:59845901-59845920 | Msa0302880:intron | 50.0% | |
ATCTGCAGGCAGATCTGACT+GGG | + | chr2_3:59845902-59845921 | Msa0302880:intron | 50.0% | |
! | GGAGTATCTTCCCATCCCAT+CGG | - | chr2_3:59845935-59845954 | None:intergenic | 50.0% |
GATGGGAAGATACTCCACGA+AGG | + | chr2_3:59845939-59845958 | Msa0302880:CDS | 50.0% | |
GAAGATACTCCACGAAGGGA+CGG | + | chr2_3:59845944-59845963 | Msa0302880:CDS | 50.0% | |
ATAGCGAGCTGCGACTGCTT+TGG | - | chr2_3:59842890-59842909 | None:intergenic | 55.0% | |
GGCGCGGTGGATAATGAAAC+AGG | - | chr2_3:59842917-59842936 | None:intergenic | 55.0% | |
TTGCTGATAGAGATCCGGCG+CGG | - | chr2_3:59842933-59842952 | None:intergenic | 55.0% | |
! | CCACCACCGGTAGACTTTTC+TGG | - | chr2_3:59843300-59843319 | None:intergenic | 55.0% |
CCAGAAAAGTCTACCGGTGG+TGG | + | chr2_3:59843297-59843316 | Msa0302880:CDS | 55.0% | |
!! | GGTGGTGGACTCTATGTTCC+TGG | + | chr2_3:59843312-59843331 | Msa0302880:CDS | 55.0% |
TGTTCCTGGGAAGGATCGAG+TGG | + | chr2_3:59843326-59843345 | Msa0302880:CDS | 55.0% | |
TCGAGTGGTTTACGTGGCAC+CGG | + | chr2_3:59843341-59843360 | Msa0302880:CDS | 55.0% | |
! | CTCCCCGTTTTGCAATGGCA+AGG | - | chr2_3:59843983-59844002 | None:intergenic | 55.0% |
CGGGGAGAGTCTCAAAGTGA+TGG | + | chr2_3:59843996-59844015 | Msa0302880:CDS | 55.0% | |
TGCAGCAGCTGCAATCGAAG+TGG | - | chr2_3:59844048-59844067 | None:intergenic | 55.0% | |
GAACCGTTCGACTGAGCGTA+GGG | + | chr2_3:59844618-59844637 | Msa0302880:CDS | 55.0% | |
AACCGTTCGACTGAGCGTAG+GGG | + | chr2_3:59844619-59844638 | Msa0302880:CDS | 55.0% | |
AACCCCTACGCTCAGTCGAA+CGG | - | chr2_3:59844624-59844643 | None:intergenic | 55.0% | |
CAGACATGTTGGGAGAGTGG+TGG | - | chr2_3:59845002-59845021 | None:intergenic | 55.0% | |
GAGCAGACATGTTGGGAGAG+TGG | - | chr2_3:59845005-59845024 | None:intergenic | 55.0% | |
!! | GGAGTGAGAGGAGGCATTCT+AGG | + | chr2_3:59845635-59845654 | Msa0302880:CDS | 55.0% |
GAAGGTTCAAGGAGAACGCC+TGG | + | chr2_3:59845787-59845806 | Msa0302880:CDS | 55.0% | |
CAGTTGCATCACCGCCATGG+AGG | + | chr2_3:59843126-59843145 | Msa0302880:exon | 60.0% | |
GTTGAGGAAAGTGGGCAGGC+AGG | + | chr2_3:59844101-59844120 | Msa0302880:CDS | 60.0% | |
GGAACCGTTCGACTGAGCGT+AGG | + | chr2_3:59844617-59844636 | Msa0302880:CDS | 60.0% | |
TTCAAGGAGTGACAGCCGGG+AGG | + | chr2_3:59845663-59845682 | Msa0302880:CDS | 60.0% | |
GGCAGATCTGACTGGGACCA+TGG | + | chr2_3:59845909-59845928 | Msa0302880:intron | 60.0% | |
TGACTGGGACCATGGCCGAT+GGG | + | chr2_3:59845917-59845936 | Msa0302880:CDS | 60.0% | |
TCTTCCCATCCCATCGGCCA+TGG | - | chr2_3:59845929-59845948 | None:intergenic | 60.0% | |
CTAGAGACACCGTCCCTTCG+TGG | - | chr2_3:59845956-59845975 | None:intergenic | 60.0% | |
CTGATAGAGATCCGGCGCGG+TGG | - | chr2_3:59842930-59842949 | None:intergenic | 65.0% | |
CTGACTGGGACCATGGCCGA+TGG | + | chr2_3:59845916-59845935 | Msa0302880:CDS | 65.0% | |
TGGGACCATGGCCGATGGGA+TGG | + | chr2_3:59845921-59845940 | Msa0302880:CDS | 65.0% | |
GGGACCATGGCCGATGGGAT+GGG | + | chr2_3:59845922-59845941 | Msa0302880:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_3 | gene | 59842796 | 59845975 | 59842796 | ID=Msa0302880;Name=Msa0302880 |
chr2_3 | mRNA | 59842796 | 59845975 | 59842796 | ID=Msa0302880-mRNA-1;Parent=Msa0302880;Name=Msa0302880-mRNA-1;_AED=0.03;_eAED=0.03;_QI=236|0.83|0.85|0.85|0.66|0.57|7|0|235 |
chr2_3 | exon | 59842796 | 59842997 | 59842796 | ID=Msa0302880-mRNA-1:exon:19448;Parent=Msa0302880-mRNA-1 |
chr2_3 | exon | 59843108 | 59843147 | 59843108 | ID=Msa0302880-mRNA-1:exon:19449;Parent=Msa0302880-mRNA-1 |
chr2_3 | exon | 59843240 | 59843381 | 59843240 | ID=Msa0302880-mRNA-1:exon:19450;Parent=Msa0302880-mRNA-1 |
chr2_3 | exon | 59843970 | 59844182 | 59843970 | ID=Msa0302880-mRNA-1:exon:19451;Parent=Msa0302880-mRNA-1 |
chr2_3 | exon | 59844578 | 59844648 | 59844578 | ID=Msa0302880-mRNA-1:exon:19452;Parent=Msa0302880-mRNA-1 |
chr2_3 | exon | 59845595 | 59845808 | 59845595 | ID=Msa0302880-mRNA-1:exon:19453;Parent=Msa0302880-mRNA-1 |
chr2_3 | exon | 59845914 | 59845975 | 59845914 | ID=Msa0302880-mRNA-1:exon:19454;Parent=Msa0302880-mRNA-1 |
chr2_3 | five_prime_UTR | 59842796 | 59842997 | 59842796 | ID=Msa0302880-mRNA-1:five_prime_utr;Parent=Msa0302880-mRNA-1 |
chr2_3 | five_prime_UTR | 59843108 | 59843141 | 59843108 | ID=Msa0302880-mRNA-1:five_prime_utr;Parent=Msa0302880-mRNA-1 |
chr2_3 | CDS | 59843142 | 59843147 | 59843142 | ID=Msa0302880-mRNA-1:cds;Parent=Msa0302880-mRNA-1 |
chr2_3 | CDS | 59843240 | 59843381 | 59843240 | ID=Msa0302880-mRNA-1:cds;Parent=Msa0302880-mRNA-1 |
chr2_3 | CDS | 59843970 | 59844182 | 59843970 | ID=Msa0302880-mRNA-1:cds;Parent=Msa0302880-mRNA-1 |
chr2_3 | CDS | 59844578 | 59844648 | 59844578 | ID=Msa0302880-mRNA-1:cds;Parent=Msa0302880-mRNA-1 |
chr2_3 | CDS | 59845595 | 59845808 | 59845595 | ID=Msa0302880-mRNA-1:cds;Parent=Msa0302880-mRNA-1 |
chr2_3 | CDS | 59845914 | 59845975 | 59845914 | ID=Msa0302880-mRNA-1:cds;Parent=Msa0302880-mRNA-1 |
Gene Sequence |
Protein sequence |