AlfalfaGEDB | Msa0302880

M. sativa cultivar zhongmu-4 / Msa0302880

KEGG: K12815
GO: GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0002376 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007389 GO:0008026 GO:0008104 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009817 GO:0009888 GO:0009892 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010051 GO:0010053 GO:0010054 GO:0010154 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016049 GO:0016070 GO:0016071 GO:0016246 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022622 GO:0030154 GO:0031047 GO:0031050 GO:0031053 GO:0031123 GO:0031124 GO:0031323 GO:0031325 GO:0031503 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033120 GO:0034470 GO:0034613 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040007 GO:0040029 GO:0042221 GO:0042623 GO:0042886 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0045184 GO:0045935 GO:0046483 GO:0046907 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048519 GO:0048522 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051641 GO:0051649 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0070727 GO:0070887 GO:0070918 GO:0071013 GO:0071166 GO:0071310 GO:0071359 GO:0071407 GO:0071426 GO:0071427 GO:0071695 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0080147 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0098542 GO:0099402 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902494 GO:1905392 GO:1990904
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0302880	XP_003597474.1	98.605	215	3	0	1	215	1	215	3.21e-137	426

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0302880	sp\|F4K2E9\|PRP16_ARATH	39.437	213	105	8	11	215	3	199	2.10e-23	101

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0302880	G7IUG0	98.605	215	3	0	1	215	1	215	1.53e-137	426

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0116270	Msa0302880	0.803765	2.982136e-49	-8.615850e-47
Msa0302880	Msa0302890	0.800251	1.572919e-48	-8.615850e-47
Msa0302880	Msa0423840	0.801517	8.672509e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0302880	MtrunA17_Chr2g0329131	98.605	215	3	0	1	215	1	215	2.95e-141	426
Msa0302880	MtrunA17_Chr3g0100131	40.367	109	49	2	124	216	160	268	3.29e-13	68.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0302880	AT5G13010.1	39.437	213	105	8	11	215	3	199	2.14e-24	101

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Find 94 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGACTACAATGACGT+TGG	0.608854	2_3:+59843272	Msa0302880:CDS
AACATCCTTCTTCTCTATTG+TGG	0.448062	2_3:+59842976	Msa0302880:five_prime_UTR
AACCCCTACGCTCAGTCGAA+CGG	0.580835	2_3:-59844621	None:intergenic
AACCGTTCGACTGAGCGTAG+GGG	0.696590	2_3:+59844619	Msa0302880:CDS
AAGGTTTCTGCTTCACCTTC+TGG	0.184399	2_3:+59845592	Msa0302880:intron
ACCAGTGAAACATCACGTGC+AGG	0.588847	2_3:+59844161	Msa0302880:CDS
ACCCTTGCCATTGCAAAACG+GGG	0.647396	2_3:+59843978	Msa0302880:CDS
ACCGGAGAGAAAATCTCGTT+TGG	0.412360	2_3:+59843359	Msa0302880:CDS
ACCTGCACGTGATGTTTCAC+TGG	0.492086	2_3:-59844162	None:intergenic
ACTTTCCTCAACAACATCAG+AGG	0.656050	2_3:-59844090	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTAAGAAGAAGATAGCATAA+TGG	-	chr2_3:59843183-59843202	None:intergenic	30.0%
AAACTAAGATTAGGTGGTTT+GGG	+	chr2_3:59843615-59843634	Msa0302880:intron	30.0%
TAGAGAGAAAGTAGATTAGA+TGG	+	chr2_3:59843642-59843661	Msa0302880:intron	30.0%
TGATATATGATTGAGGATTG+TGG	+	chr2_3:59843761-59843780	Msa0302880:intron	30.0%
ATGTATAAGGGTAACTGTAA+AGG	+	chr2_3:59844387-59844406	Msa0302880:intron	30.0%
TCATCATTTCAGACAGATTA+AGG	-	chr2_3:59844433-59844452	None:intergenic	30.0%
TGTTAATTGAATCGAAGTGT+TGG	+	chr2_3:59845038-59845057	Msa0302880:intron	30.0%
AAAAGTAACAGACTGATCTA+GGG	-	chr2_3:59845141-59845160	None:intergenic	30.0%
TAAAAGTAACAGACTGATCT+AGG	-	chr2_3:59845142-59845161	None:intergenic	30.0%
TTTATCAAGTAAAAACTGCC+AGG	-	chr2_3:59845513-59845532	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	59842796	59845975	59842796	ID=Msa0302880;Name=Msa0302880
chr2_3	mRNA	59842796	59845975	59842796	ID=Msa0302880-mRNA-1;Parent=Msa0302880;Name=Msa0302880-mRNA-1;_AED=0.03;_eAED=0.03;_QI=236\|0.83\|0.85\|0.85\|0.66\|0.57\|7\|0\|235
chr2_3	exon	59842796	59842997	59842796	ID=Msa0302880-mRNA-1:exon:19448;Parent=Msa0302880-mRNA-1
chr2_3	exon	59843108	59843147	59843108	ID=Msa0302880-mRNA-1:exon:19449;Parent=Msa0302880-mRNA-1
chr2_3	exon	59843240	59843381	59843240	ID=Msa0302880-mRNA-1:exon:19450;Parent=Msa0302880-mRNA-1
chr2_3	exon	59843970	59844182	59843970	ID=Msa0302880-mRNA-1:exon:19451;Parent=Msa0302880-mRNA-1
chr2_3	exon	59844578	59844648	59844578	ID=Msa0302880-mRNA-1:exon:19452;Parent=Msa0302880-mRNA-1
chr2_3	exon	59845595	59845808	59845595	ID=Msa0302880-mRNA-1:exon:19453;Parent=Msa0302880-mRNA-1
chr2_3	exon	59845914	59845975	59845914	ID=Msa0302880-mRNA-1:exon:19454;Parent=Msa0302880-mRNA-1
chr2_3	five_prime_UTR	59842796	59842997	59842796	ID=Msa0302880-mRNA-1:five_prime_utr;Parent=Msa0302880-mRNA-1
chr2_3	five_prime_UTR	59843108	59843141	59843108	ID=Msa0302880-mRNA-1:five_prime_utr;Parent=Msa0302880-mRNA-1
chr2_3	CDS	59843142	59843147	59843142	ID=Msa0302880-mRNA-1:cds;Parent=Msa0302880-mRNA-1
chr2_3	CDS	59843240	59843381	59843240	ID=Msa0302880-mRNA-1:cds;Parent=Msa0302880-mRNA-1
chr2_3	CDS	59843970	59844182	59843970	ID=Msa0302880-mRNA-1:cds;Parent=Msa0302880-mRNA-1
chr2_3	CDS	59844578	59844648	59844578	ID=Msa0302880-mRNA-1:cds;Parent=Msa0302880-mRNA-1
chr2_3	CDS	59845595	59845808	59845595	ID=Msa0302880-mRNA-1:cds;Parent=Msa0302880-mRNA-1
chr2_3	CDS	59845914	59845975	59845914	ID=Msa0302880-mRNA-1:cds;Parent=Msa0302880-mRNA-1

Gene Sequence

>Msa0302880

ATGGAGAAAAATGGTGCTAATGCTGAAATTGTTGACATAAACAAGACTACAATGACGTTGGAACCAGAAAAGTCTACCGGTGGTGGACTCTATGTTCCTGGGAAGGATCGAGTGGTTTACGTGGCACCGGAGAGAAAATCTCGTTTGGGACTTGATACCCTTGCCATTGCAAAACGGGGAGAGTCTCAAAGTGATGGGGCATTCAAGGTGCCAAAAGAGATAACCACTTCGATTGCAGCTGCTGCAGAAGATGAAGATAAGTCTGAGTCCTCTGATGTTGTTGAGGAAAGTGGGCAGGCAGGTACACGCAGACATGCTCATAGAAGATATCGTGAGACAACCAGTGAAACATCACGTGCAGAAAGTTCTCTGACCGAAGATCACCATGCTGATACATACGGGAACCGTTCGACTGAGCGTAGGGGTTCAGATGTTTCTGCTTCACCTTCTGGATATGACAGGGATGATCATAGGAGTGAGAGGAGGCATTCTAGGGATGATTCAAGGAGTGACAGCCGGGAGGTCCGACATAGAAACAATTATGACAGTAGGGAGTCTTACTCAGGAAGGGATTCACGTAGTAGGTATTATGATCATGAATATGATAGAAAGCGAAACAGATATGAAGGTTCAAGGAGAACGCCTGATCTGACTGGGACCATGGCCGATGGGATGGGAAGATACTCCACGAAGGGACGGTGTCTCTAG

Protein sequence

>Msa0302880

MEKNGANAEIVDINKTTMTLEPEKSTGGGLYVPGKDRVVYVAPERKSRLGLDTLAIAKRGESQSDGAFKVPKEITTSIAAAAEDEDKSESSDVVEESGQAGTRRHAHRRYRETTSETSRAESSLTEDHHADTYGNRSTERRGSDVSASPSGYDRDDHRSERRHSRDDSRSDSREVRHRNNYDSRESYSGRDSRSRYYDHEYDRKRNRYEGSRRTPDLTGTMADGMGRYSTKGRCL*