AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0302890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0302890 MtrunA17_Chr2g0329131 100.000 335 0 0 1 335 271 605 0.0 681
Msa0302890 MtrunA17_Chr3g0100131 88.060 335 34 2 1 335 298 626 0.0 595
Msa0302890 MtrunA17_Chr1g0211961 31.799 239 127 8 116 335 348 569 6.61e-16 79.0
Msa0302890 MtrunA17_Chr1g0156271 30.841 214 114 8 142 335 405 604 1.29e-14 75.1
Msa0302890 MtrunA17_Chr8g0354471 42.169 83 42 2 252 334 67 143 2.66e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0302890 AT5G13010.1 78.571 336 71 1 1 335 257 592 1.66e-173 515

Find 63 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGTCAAATCTTCTGTTTC+TGG 0.108054 2_3:+59846266 Msa0302890:CDS
ATAAGTCTCGCCAACGCTTT+TGG 0.228112 2_3:+59847998 Msa0302890:CDS
CCTAAAAGTTACCAGTCTTT+TGG 0.276529 2_3:-59846742 None:intergenic
GTGGTTGTAGTTGGGGAAAC+TGG 0.304711 2_3:+59848808 Msa0302890:CDS
ATCAGGTTGTGGTTGTAGTT+GGG 0.315445 2_3:+59848800 Msa0302890:CDS
GACAACAAACCTGTGTCAAT+TGG 0.352546 2_3:-59848846 None:intergenic
TCAAAACTTGGCGATATCTT+AGG 0.358688 2_3:+59848033 Msa0302890:CDS
CTGAGATCAGGTGCTGTTAG+AGG 0.387539 2_3:+59847667 Msa0302890:CDS
AGTGCGAGAAGAGTTATTAC+AGG 0.387845 2_3:+59848321 Msa0302890:CDS
AATCAGGTTGTGGTTGTAGT+TGG 0.407992 2_3:+59848799 Msa0302890:CDS
CCTGTTCCAATACGTGCTTC+TGG 0.413064 2_3:+59846239 Msa0302890:CDS
ACAATTTCTTGCTTTGAGAA+AGG 0.421311 2_3:-59847600 None:intergenic
CATAATAGGCTCTGCCTGCT+TGG 0.422406 2_3:-59847887 None:intergenic
CAATTTCTTGCTTTGAGAAA+GGG 0.426047 2_3:-59847599 None:intergenic
GAACTTGCAGGCTCAAAACT+TGG 0.434385 2_3:+59848021 Msa0302890:CDS
AACAACTCTGCCGTCAAGAA+AGG 0.436041 2_3:-59847860 None:intergenic
TAGATAATTCACCTTCTCCT+TGG 0.440155 2_3:+59846198 None:intergenic
CCAGAAGCACGTATTGGAAC+AGG 0.445989 2_3:-59846239 None:intergenic
TACAGCTGATAATGCTCAAT+GGG 0.451219 2_3:+59847630 Msa0302890:CDS
GATCGGCAGCTGCTGAGATC+AGG 0.452442 2_3:+59847655 Msa0302890:CDS
ACAACAAACCTGTGTCAATT+GGG 0.454396 2_3:-59848845 None:intergenic
GTAGTTGGGGAAACTGGTTC+AGG 0.458547 2_3:+59848814 Msa0302890:CDS
GCAGGTGATTCGAGAAAATC+AGG 0.462168 2_3:+59848783 Msa0302890:intron
AGATAATTCACCTTCTCCTT+GGG 0.462285 2_3:+59846199 None:intergenic
TATTCGAACTCTGCTTCTCA+TGG 0.468897 2_3:-59847978 None:intergenic
ACAAAGCCTCCCTTTCTTGA+CGG 0.470785 2_3:+59847850 Msa0302890:CDS
TGAAGGTATGATAGAGAGGA+AGG 0.471895 2_3:+59846639 Msa0302890:intron
GGCCGAGTTGGCCAAAAGAC+TGG 0.484516 2_3:+59846731 Msa0302890:CDS
TATTCACAGGTCCGAAGAGA+TGG 0.488187 2_3:+59847565 Msa0302890:intron
ACATCTTAGTCCCATCTCTT+CGG 0.490668 2_3:-59847576 None:intergenic
TTCTCGCAAAGGATCTGCTC+TGG 0.504996 2_3:+59847945 Msa0302890:CDS
GAAGAGCCAGAAGCACGTAT+TGG 0.507750 2_3:-59846245 None:intergenic
ACAACTCTGCCGTCAAGAAA+GGG 0.514009 2_3:-59847859 None:intergenic
TCAGGTTGTGGTTGTAGTTG+GGG 0.518299 2_3:+59848801 Msa0302890:CDS
ATTAAAGCCATGTCAGATGT+TGG 0.525228 2_3:-59847922 None:intergenic
ATTATGAAGGTATGATAGAG+AGG 0.527346 2_3:+59846635 Msa0302890:intron
TGAAAGCATGCGTCAAGAGA+TGG 0.527593 2_3:+59846494 Msa0302890:CDS
AATAGCAGATAAATCTGACT+TGG 0.534804 2_3:+59846446 Msa0302890:CDS
TTACAGCTGATAATGCTCAA+TGG 0.535650 2_3:+59847629 Msa0302890:CDS
CAGAGTTGTTTATACCAAGC+AGG 0.536995 2_3:+59847873 Msa0302890:CDS
TGATGCAGACACTGCTGTTG+TGG 0.540862 2_3:+59848168 Msa0302890:CDS
AGAAAACTCAGATACATATG+AGG 0.551682 2_3:+59846325 Msa0302890:CDS
ATTCACAGGTCCGAAGAGAT+GGG 0.556356 2_3:+59847566 Msa0302890:intron
ACTGCTGTTGTGGGTGAAGA+TGG 0.556433 2_3:+59848178 Msa0302890:CDS
ATAATGCTCAATGGGAAGAT+CGG 0.556602 2_3:+59847638 Msa0302890:CDS
GATGCAGACACTGCTGTTGT+GGG 0.558748 2_3:+59848169 Msa0302890:CDS
ATGGCTTTAATTTCTCGCAA+AGG 0.561077 2_3:+59847934 Msa0302890:CDS
GATTCGAGAAAATCAGGTTG+TGG 0.562212 2_3:+59848789 Msa0302890:CDS
CTGTTTCTGGATATAATCGA+AGG 0.571217 2_3:+59846279 Msa0302890:CDS
GCACGTATTGGAACAGGAGA+CGG 0.573263 2_3:-59846233 None:intergenic
GAAACATGGTCCCAAGGAGA+AGG 0.574516 2_3:-59846209 None:intergenic
CTGCAAGTTCCCAAAAGCGT+TGG 0.574712 2_3:-59848008 None:intergenic
ACTAAATTACATACCATGCT+CGG 0.575391 2_3:-59846530 None:intergenic
AATATGATGCAGACCGAGCA+TGG 0.591105 2_3:+59846517 Msa0302890:CDS
GACGGAGAAACATGGTCCCA+AGG 0.604985 2_3:-59846215 None:intergenic
AAGGTCATTCTTCTTGTGCA+CGG 0.605865 2_3:+59847730 Msa0302890:CDS
TCAGACTGAATTTGATGATG+AGG 0.611050 2_3:+59847699 Msa0302890:CDS
ATAGCAGATAAATCTGACTT+GGG 0.613815 2_3:+59846447 Msa0302890:CDS
TGATGATGAGGATGAACGCA+AGG 0.621341 2_3:+59847711 Msa0302890:CDS
AAAAGATCCAACATCTGACA+TGG 0.630574 2_3:+59847915 Msa0302890:CDS
GAACAGGAGACGGAGAAACA+TGG 0.644244 2_3:-59846223 None:intergenic
ACTCTGCCGTCAAGAAAGGG+AGG 0.660824 2_3:-59847856 None:intergenic
AGGTGCTGTTAGAGGTACAG+AGG 0.677598 2_3:+59847675 Msa0302890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAGAGATTATTATTATGA+AGG + chr2_3:59846622-59846641 Msa0302890:intron 15.0%
!!! TGGTTTATGTTTTTAATAAA+TGG + chr2_3:59847198-59847217 Msa0302890:intron 15.0%
!!! CATTAATAATTTTATTCCTC+AGG + chr2_3:59846419-59846438 Msa0302890:intron 20.0%
!!! GGTATATTTTAATATTGAAC+AGG + chr2_3:59846928-59846947 Msa0302890:intron 20.0%
!! TGATAAAAAAATGACAAATG+CGG - chr2_3:59848572-59848591 None:intergenic 20.0%
!! TTTATTTATTTATGATGTGC+AGG + chr2_3:59848765-59848784 Msa0302890:intron 20.0%
! ACAAAAAACCTACATATGTT+AGG - chr2_3:59846361-59846380 None:intergenic 25.0%
!! TAATAATTTTATTCCTCAGG+AGG + chr2_3:59846422-59846441 Msa0302890:intron 25.0%
! CTACTTAAAACTATAATAGC+AGG - chr2_3:59846843-59846862 None:intergenic 25.0%
!!! CTGCTATTATAGTTTTAAGT+AGG + chr2_3:59846841-59846860 Msa0302890:intron 25.0%
! TCGAATAAAGTTGTTACATA+TGG + chr2_3:59846871-59846890 Msa0302890:intron 25.0%
! TGGAAGTTATAGATAATCAT+TGG + chr2_3:59846891-59846910 Msa0302890:intron 25.0%
! TCTTCAACAAATTAATTGTC+TGG - chr2_3:59847225-59847244 None:intergenic 25.0%
! TTATAGCAGTATTTGCAATA+TGG + chr2_3:59847384-59847403 Msa0302890:intron 25.0%
!!! ATTTTGTTATCTCTATTCAC+AGG + chr2_3:59847552-59847571 Msa0302890:intron 25.0%
!! CAAGTTAATGTAGTTTGTAT+TGG + chr2_3:59847778-59847797 Msa0302890:intron 25.0%
!!! AGATGGTGAAATTGATTTTA+AGG + chr2_3:59848195-59848214 Msa0302890:CDS 25.0%
!! TTTTCAAATCACATGAAGAA+GGG + chr2_3:59848229-59848248 Msa0302890:CDS 25.0%
! TATCTGTGGCAATTATTTAT+TGG + chr2_3:59848361-59848380 Msa0302890:intron 25.0%
! TTATCTATCTGAATTATCTG+TGG + chr2_3:59848462-59848481 Msa0302890:intron 25.0%
!! ATCTGAGTTTTCTGAAGAAA+AGG - chr2_3:59846318-59846337 None:intergenic 30.0%
AGAAAACTCAGATACATATG+AGG + chr2_3:59846325-59846344 Msa0302890:CDS 30.0%
! ATTTTGCACCTAACATATGT+AGG + chr2_3:59846350-59846369 Msa0302890:intron 30.0%
AATAGCAGATAAATCTGACT+TGG + chr2_3:59846446-59846465 Msa0302890:CDS 30.0%
ATAGCAGATAAATCTGACTT+GGG + chr2_3:59846447-59846466 Msa0302890:CDS 30.0%
ACTAAATTACATACCATGCT+CGG - chr2_3:59846533-59846552 None:intergenic 30.0%
TCTTCAGTATTTGATACATG+TGG + chr2_3:59846578-59846597 Msa0302890:intron 30.0%
! ATTATGAAGGTATGATAGAG+AGG + chr2_3:59846635-59846654 Msa0302890:intron 30.0%
AAAACTATAATAGCAGGAAG+AGG - chr2_3:59846837-59846856 None:intergenic 30.0%
!! ATAGATAATCATTGGCCTTA+AGG + chr2_3:59846899-59846918 Msa0302890:intron 30.0%
CTATATTTGACATGATAGCA+TGG + chr2_3:59846953-59846972 Msa0302890:intron 30.0%
ATCAATCAGAAGGAACATAA+TGG - chr2_3:59847056-59847075 None:intergenic 30.0%
TGTTCCTTCTGATTGATATT+TGG + chr2_3:59847059-59847078 Msa0302890:intron 30.0%
TAAGGATATGGACAAATCAT+AGG - chr2_3:59847093-59847112 None:intergenic 30.0%
! TTTTCTGTATCCAATTCCAA+TGG + chr2_3:59847251-59847270 Msa0302890:intron 30.0%
!!! TCAACTCGTGTTCTTTTTTA+TGG + chr2_3:59847275-59847294 Msa0302890:intron 30.0%
AGCAACAATAAGAAACTATG+TGG - chr2_3:59847422-59847441 None:intergenic 30.0%
ATAGTTTCTTATTGTTGCTG+TGG + chr2_3:59847423-59847442 Msa0302890:intron 30.0%
!!! GCACATTATTTTAAGCAAGT+TGG + chr2_3:59847494-59847513 Msa0302890:intron 30.0%
!! CAATTTCTTGCTTTGAGAAA+GGG - chr2_3:59847602-59847621 None:intergenic 30.0%
!! ACAATTTCTTGCTTTGAGAA+AGG - chr2_3:59847603-59847622 None:intergenic 30.0%
!! CTACATTAACTTGTCAAAGT+TGG - chr2_3:59847771-59847790 None:intergenic 30.0%
! GGATCTTTTATTGGCATAAT+AGG - chr2_3:59847904-59847923 None:intergenic 30.0%
! TCAGATGTTGGATCTTTTAT+TGG - chr2_3:59847913-59847932 None:intergenic 30.0%
TGCTTACTCTCTTCATAATT+TGG + chr2_3:59848105-59848124 Msa0302890:intron 30.0%
!! TGGTGAAATTGATTTTAAGG+AGG + chr2_3:59848198-59848217 Msa0302890:CDS 30.0%
! GTTTTCAAATCACATGAAGA+AGG + chr2_3:59848228-59848247 Msa0302890:CDS 30.0%
! GTTTTTCTCTGTTTTATCTG+TGG + chr2_3:59848347-59848366 Msa0302890:intron 30.0%
AAAAAAATGACAAATGCGGT+CGG - chr2_3:59848568-59848587 None:intergenic 30.0%
ATAACTAACAGGGTGAAATA+AGG - chr2_3:59848618-59848637 None:intergenic 30.0%
ATTCCAATGCATAACTAACA+GGG - chr2_3:59848628-59848647 None:intergenic 30.0%
TATTCCAATGCATAACTAAC+AGG - chr2_3:59848629-59848648 None:intergenic 30.0%
TCAGTCAAATCTTCTGTTTC+TGG + chr2_3:59846266-59846285 Msa0302890:CDS 35.0%
!! CTGTTTCTGGATATAATCGA+AGG + chr2_3:59846279-59846298 Msa0302890:CDS 35.0%
!!! GATAGCTCTTCACTTTTTCT+TGG + chr2_3:59846681-59846700 Msa0302890:CDS 35.0%
!!! TTCACTTTTTCTTGGAGATG+AGG + chr2_3:59846689-59846708 Msa0302890:CDS 35.0%
GGCTTCATTTCAGAAAAAAG+AGG + chr2_3:59846710-59846729 Msa0302890:CDS 35.0%
! CCTAAAAGTTACCAGTCTTT+TGG - chr2_3:59846745-59846764 None:intergenic 35.0%
! CCAAAAGACTGGTAACTTTT+AGG + chr2_3:59846742-59846761 Msa0302890:intron 35.0%
AATCAAGCACATACAAGTGA+AGG - chr2_3:59846797-59846816 None:intergenic 35.0%
AAATATACCAGCTCTCCTTA+AGG - chr2_3:59846917-59846936 None:intergenic 35.0%
TGGTCCAAATATCAATCAGA+AGG - chr2_3:59847066-59847085 None:intergenic 35.0%
ATGGACAAATCATAGGTAAC+TGG - chr2_3:59847086-59847105 None:intergenic 35.0%
!! GTCCATATCCTTAGTTTTTG+TGG + chr2_3:59847100-59847119 Msa0302890:intron 35.0%
CACCACAAAAACTAAGGATA+TGG - chr2_3:59847105-59847124 None:intergenic 35.0%
!! CATATCCTTAGTTTTTGTGG+TGG + chr2_3:59847103-59847122 Msa0302890:intron 35.0%
!!! CGTGTTCTTTTTTATGGAGT+TGG + chr2_3:59847281-59847300 Msa0302890:intron 35.0%
TAACTCAACCCTACAAATGT+GGG - chr2_3:59847321-59847340 None:intergenic 35.0%
TCAAAGCATGTCTTAGAACT+GGG - chr2_3:59847352-59847371 None:intergenic 35.0%
! GTACAAAGTGTTCAGTGTAT+TGG + chr2_3:59847470-59847489 Msa0302890:intron 35.0%
! TTACAGCTGATAATGCTCAA+TGG + chr2_3:59847629-59847648 Msa0302890:CDS 35.0%
! TACAGCTGATAATGCTCAAT+GGG + chr2_3:59847630-59847649 Msa0302890:CDS 35.0%
ATAATGCTCAATGGGAAGAT+CGG + chr2_3:59847638-59847657 Msa0302890:CDS 35.0%
!! TCAGACTGAATTTGATGATG+AGG + chr2_3:59847699-59847718 Msa0302890:CDS 35.0%
CTTTGTATCTGTGATCAACA+TGG - chr2_3:59847836-59847855 None:intergenic 35.0%
AAAAGATCCAACATCTGACA+TGG + chr2_3:59847915-59847934 Msa0302890:CDS 35.0%
ATTAAAGCCATGTCAGATGT+TGG - chr2_3:59847925-59847944 None:intergenic 35.0%
!! ATGGCTTTAATTTCTCGCAA+AGG + chr2_3:59847934-59847953 Msa0302890:CDS 35.0%
TCAAAACTTGGCGATATCTT+AGG + chr2_3:59848033-59848052 Msa0302890:CDS 35.0%
TCTTCTCGCACTGAAAAAAT+AGG - chr2_3:59848313-59848332 None:intergenic 35.0%
TCTATCTGAATTATCTGTGG+AGG + chr2_3:59848465-59848484 Msa0302890:intron 35.0%
ACAGGGTGAAATAAGGAAAA+GGG - chr2_3:59848611-59848630 None:intergenic 35.0%
AACAGGGTGAAATAAGGAAA+AGG - chr2_3:59848612-59848631 None:intergenic 35.0%
! ACATTTTTATCTGCCTGTGT+TGG + chr2_3:59848659-59848678 Msa0302890:intron 35.0%
ATGAAATGAGAAACCAACAC+AGG - chr2_3:59848675-59848694 None:intergenic 35.0%
!! TTATCTGCTATTTCCTCCTG+AGG - chr2_3:59846438-59846457 None:intergenic 40.0%
! TGAAGGTATGATAGAGAGGA+AGG + chr2_3:59846639-59846658 Msa0302890:intron 40.0%
GCTTACCACCACAAAAACTA+AGG - chr2_3:59847111-59847130 None:intergenic 40.0%
TAACATGTAGCCTACCAACA+TGG + chr2_3:59847146-59847165 Msa0302890:intron 40.0%
AACATGTAGCCTACCAACAT+GGG + chr2_3:59847147-59847166 Msa0302890:intron 40.0%
GAGTGATTGGCATTTGAATC+TGG + chr2_3:59847178-59847197 Msa0302890:intron 40.0%
! ATGGAGTTGGTCTGTGATTT+AGG + chr2_3:59847294-59847313 Msa0302890:intron 40.0%
! TGGAGTTGGTCTGTGATTTA+GGG + chr2_3:59847295-59847314 Msa0302890:intron 40.0%
! ATTTAGGGCCCACATTTGTA+GGG + chr2_3:59847310-59847329 Msa0302890:intron 40.0%
CTAACTCAACCCTACAAATG+TGG - chr2_3:59847322-59847341 None:intergenic 40.0%
CACATTTGTAGGGTTGAGTT+AGG + chr2_3:59847320-59847339 Msa0302890:intron 40.0%
CATGTCTTAGAACTGGGATT+GGG - chr2_3:59847346-59847365 None:intergenic 40.0%
GTCAAAGCATGTCTTAGAAC+TGG - chr2_3:59847353-59847372 None:intergenic 40.0%
ACATCTTAGTCCCATCTCTT+CGG - chr2_3:59847579-59847598 None:intergenic 40.0%
AAGGTCATTCTTCTTGTGCA+CGG + chr2_3:59847730-59847749 Msa0302890:CDS 40.0%
CAGAGTTGTTTATACCAAGC+AGG + chr2_3:59847873-59847892 Msa0302890:CDS 40.0%
TATTCGAACTCTGCTTCTCA+TGG - chr2_3:59847981-59848000 None:intergenic 40.0%
CGTTGAAAAAACAGCAGAAC+AGG + chr2_3:59848056-59848075 Msa0302890:CDS 40.0%
CAAAAACTCTTGCTGAGCAA+AGG + chr2_3:59848278-59848297 Msa0302890:CDS 40.0%
AGTGCGAGAAGAGTTATTAC+AGG + chr2_3:59848321-59848340 Msa0302890:CDS 40.0%
CGAGAAGAGTTATTACAGGT+TGG + chr2_3:59848325-59848344 Msa0302890:intron 40.0%
ATCTGAATTATCTGTGGAGG+AGG + chr2_3:59848468-59848487 Msa0302890:intron 40.0%
TTATCTGTGGAGGAGGAATA+TGG + chr2_3:59848475-59848494 Msa0302890:intron 40.0%
TATCTGTGGAGGAGGAATAT+GGG + chr2_3:59848476-59848495 Msa0302890:intron 40.0%
TTTCCCAGTGATCAAGTACT+AGG + chr2_3:59848531-59848550 Msa0302890:intron 40.0%
CAACCTAGTACTTGATCACT+GGG - chr2_3:59848537-59848556 None:intergenic 40.0%
ACAACCTAGTACTTGATCAC+TGG - chr2_3:59848538-59848557 None:intergenic 40.0%
TCACCCTGTTAGTTATGCAT+TGG + chr2_3:59848622-59848641 Msa0302890:intron 40.0%
! GATTCGAGAAAATCAGGTTG+TGG + chr2_3:59848789-59848808 Msa0302890:CDS 40.0%
! AATCAGGTTGTGGTTGTAGT+TGG + chr2_3:59848799-59848818 Msa0302890:CDS 40.0%
! ATCAGGTTGTGGTTGTAGTT+GGG + chr2_3:59848800-59848819 Msa0302890:CDS 40.0%
! TGAAAGCATGCGTCAAGAGA+TGG + chr2_3:59846494-59846513 Msa0302890:CDS 45.0%
AATATGATGCAGACCGAGCA+TGG + chr2_3:59846517-59846536 Msa0302890:CDS 45.0%
TCAGAAAAAAGAGGCCGAGT+TGG + chr2_3:59846719-59846738 Msa0302890:CDS 45.0%
! TACCAGTCTTTTGGCCAACT+CGG - chr2_3:59846736-59846755 None:intergenic 45.0%
!! ATGGGTGGCTTTTGAGTGAT+TGG + chr2_3:59847165-59847184 Msa0302890:intron 45.0%
! ACGAGTTGAGCCATTGGAAT+TGG - chr2_3:59847264-59847283 None:intergenic 45.0%
! AAGAACACGAGTTGAGCCAT+TGG - chr2_3:59847270-59847289 None:intergenic 45.0%
! GATTTAGGGCCCACATTTGT+AGG + chr2_3:59847309-59847328 Msa0302890:intron 45.0%
GCATGTCTTAGAACTGGGAT+TGG - chr2_3:59847347-59847366 None:intergenic 45.0%
TATTCACAGGTCCGAAGAGA+TGG + chr2_3:59847565-59847584 Msa0302890:intron 45.0%
ATTCACAGGTCCGAAGAGAT+GGG + chr2_3:59847566-59847585 Msa0302890:intron 45.0%
! TGATGATGAGGATGAACGCA+AGG + chr2_3:59847711-59847730 Msa0302890:CDS 45.0%
ACAAAGCCTCCCTTTCTTGA+CGG + chr2_3:59847850-59847869 Msa0302890:CDS 45.0%
ACAACTCTGCCGTCAAGAAA+GGG - chr2_3:59847862-59847881 None:intergenic 45.0%
AACAACTCTGCCGTCAAGAA+AGG - chr2_3:59847863-59847882 None:intergenic 45.0%
! ATAAGTCTCGCCAACGCTTT+TGG + chr2_3:59847998-59848017 Msa0302890:CDS 45.0%
! TAAGTCTCGCCAACGCTTTT+GGG + chr2_3:59847999-59848018 Msa0302890:CDS 45.0%
GAACTTGCAGGCTCAAAACT+TGG + chr2_3:59848021-59848040 Msa0302890:CDS 45.0%
CAGCAGAACAGGTATTCTTC+TGG + chr2_3:59848067-59848086 Msa0302890:intron 45.0%
GCAGGTGATTCGAGAAAATC+AGG + chr2_3:59848783-59848802 Msa0302890:intron 45.0%
! TCAGGTTGTGGTTGTAGTTG+GGG + chr2_3:59848801-59848820 Msa0302890:CDS 45.0%
GAAACATGGTCCCAAGGAGA+AGG - chr2_3:59846212-59846231 None:intergenic 50.0%
GAACAGGAGACGGAGAAACA+TGG - chr2_3:59846226-59846245 None:intergenic 50.0%
GCACGTATTGGAACAGGAGA+CGG - chr2_3:59846236-59846255 None:intergenic 50.0%
! CCAGAAGCACGTATTGGAAC+AGG - chr2_3:59846242-59846261 None:intergenic 50.0%
CCTGTTCCAATACGTGCTTC+TGG + chr2_3:59846239-59846258 Msa0302890:CDS 50.0%
! GAAGAGCCAGAAGCACGTAT+TGG - chr2_3:59846248-59846267 None:intergenic 50.0%
TGTGCTTGATTGTCCGCGTT+TGG + chr2_3:59846806-59846825 Msa0302890:intron 50.0%
!! TCATTGGCCTTAAGGAGAGC+TGG + chr2_3:59846907-59846926 Msa0302890:intron 50.0%
ATGTAGCCTACCAACATGGG+TGG + chr2_3:59847150-59847169 Msa0302890:intron 50.0%
CAAAAGCCACCCATGTTGGT+AGG - chr2_3:59847159-59847178 None:intergenic 50.0%
CACTCAAAAGCCACCCATGT+TGG - chr2_3:59847163-59847182 None:intergenic 50.0%
!! CTGAGATCAGGTGCTGTTAG+AGG + chr2_3:59847667-59847686 Msa0302890:CDS 50.0%
!! AGGTGCTGTTAGAGGTACAG+AGG + chr2_3:59847675-59847694 Msa0302890:CDS 50.0%
CATAATAGGCTCTGCCTGCT+TGG - chr2_3:59847890-59847909 None:intergenic 50.0%
TTCTCGCAAAGGATCTGCTC+TGG + chr2_3:59847945-59847964 Msa0302890:CDS 50.0%
! CTGCAAGTTCCCAAAAGCGT+TGG - chr2_3:59848011-59848030 None:intergenic 50.0%
!! CAACGCTTTTGGGAACTTGC+AGG + chr2_3:59848009-59848028 Msa0302890:CDS 50.0%
CAGCAGTGTCTGCATCAATC+TGG - chr2_3:59848165-59848184 None:intergenic 50.0%
TGATGCAGACACTGCTGTTG+TGG + chr2_3:59848168-59848187 Msa0302890:CDS 50.0%
GATGCAGACACTGCTGTTGT+GGG + chr2_3:59848169-59848188 Msa0302890:CDS 50.0%
ACTGCTGTTGTGGGTGAAGA+TGG + chr2_3:59848178-59848197 Msa0302890:CDS 50.0%
TGTGGAGGAGGAATATGGGT+TGG + chr2_3:59848480-59848499 Msa0302890:intron 50.0%
GTGGAGGAGGAATATGGGTT+GGG + chr2_3:59848481-59848500 Msa0302890:intron 50.0%
GTGGTTGTAGTTGGGGAAAC+TGG + chr2_3:59848808-59848827 Msa0302890:CDS 50.0%
! GTAGTTGGGGAAACTGGTTC+AGG + chr2_3:59848814-59848833 Msa0302890:CDS 50.0%
GACGGAGAAACATGGTCCCA+AGG - chr2_3:59846218-59846237 None:intergenic 55.0%
!! GGAAGAGGAAGCACCAAACG+CGG - chr2_3:59846822-59846841 None:intergenic 55.0%
ACTCTGCCGTCAAGAAAGGG+AGG - chr2_3:59847859-59847878 None:intergenic 55.0%
! GGCCGAGTTGGCCAAAAGAC+TGG + chr2_3:59846731-59846750 Msa0302890:CDS 60.0%
GATCGGCAGCTGCTGAGATC+AGG + chr2_3:59847655-59847674 Msa0302890:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 59846203 59848855 59846203 ID=Msa0302890;Name=Msa0302890
chr2_3 mRNA 59846203 59848855 59846203 ID=Msa0302890-mRNA-1;Parent=Msa0302890;Name=Msa0302890-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.83|0.42|1|1|0.71|7|0|335
chr2_3 exon 59846203 59846346 59846203 ID=Msa0302890-mRNA-1:exon:19439;Parent=Msa0302890-mRNA-1
chr2_3 exon 59846441 59846538 59846441 ID=Msa0302890-mRNA-1:exon:19440;Parent=Msa0302890-mRNA-1
chr2_3 exon 59846644 59846752 59846644 ID=Msa0302890-mRNA-1:exon:19441;Parent=Msa0302890-mRNA-1
chr2_3 exon 59847574 59847751 59847574 ID=Msa0302890-mRNA-1:exon:19442;Parent=Msa0302890-mRNA-1
chr2_3 exon 59847848 59848077 59847848 ID=Msa0302890-mRNA-1:exon:19443;Parent=Msa0302890-mRNA-1
chr2_3 exon 59848166 59848342 59848166 ID=Msa0302890-mRNA-1:exon:19444;Parent=Msa0302890-mRNA-1
chr2_3 exon 59848787 59848855 59848787 ID=Msa0302890-mRNA-1:exon:19445;Parent=Msa0302890-mRNA-1
chr2_3 CDS 59846203 59846346 59846203 ID=Msa0302890-mRNA-1:cds;Parent=Msa0302890-mRNA-1
chr2_3 CDS 59846441 59846538 59846441 ID=Msa0302890-mRNA-1:cds;Parent=Msa0302890-mRNA-1
chr2_3 CDS 59846644 59846752 59846644 ID=Msa0302890-mRNA-1:cds;Parent=Msa0302890-mRNA-1
chr2_3 CDS 59847574 59847751 59847574 ID=Msa0302890-mRNA-1:cds;Parent=Msa0302890-mRNA-1
chr2_3 CDS 59847848 59848077 59847848 ID=Msa0302890-mRNA-1:cds;Parent=Msa0302890-mRNA-1
chr2_3 CDS 59848166 59848342 59848166 ID=Msa0302890-mRNA-1:cds;Parent=Msa0302890-mRNA-1
chr2_3 CDS 59848787 59848855 59848787 ID=Msa0302890-mRNA-1:cds;Parent=Msa0302890-mRNA-1
Gene Sequence

>Msa0302890

AATTCACCTTCTCCTTGGGACCATGTTTCTCCGTCTCCTGTTCCAATACGTGCTTCTGGCTCTTCAGTCAAATCTTCTGTTTCTGGATATAATCGAAGGTCGCATAAACTCGCCTTTTCTTCAGAAAACTCAGATACATATGAGGAGGAAATAGCAGATAAATCTGACTTGGGTGAAGAACACAAGTATGAGATTACTGAAAGCATGCGTCAAGAGATGGAATATGATGCAGACCGAGCATGGTATGATAGAGAGGAAGGCAGCGCATTGTTTGATTCTGATAGCTCTTCACTTTTTCTTGGAGATGAGGCTTCATTTCAGAAAAAAGAGGCCGAGTTGGCCAAAAGACTGGTCCGAAGAGATGGGACTAAGATGTCCCTTTCTCAAAGCAAGAAATTGTCTCAGCTTACAGCTGATAATGCTCAATGGGAAGATCGGCAGCTGCTGAGATCAGGTGCTGTTAGAGGTACAGAGGTTCAGACTGAATTTGATGATGAGGATGAACGCAAGGTCATTCTTCTTGTGCACGATACAAAGCCTCCCTTTCTTGACGGCAGAGTTGTTTATACCAAGCAGGCAGAGCCTATTATGCCAATAAAAGATCCAACATCTGACATGGCTTTAATTTCTCGCAAAGGATCTGCTCTGGTAAGAGAAATCCATGAGAAGCAGAGTTCGAATAAGTCTCGCCAACGCTTTTGGGAACTTGCAGGCTCAAAACTTGGCGATATCTTAGGCGTTGAAAAAACAGCAGAACAGATTGATGCAGACACTGCTGTTGTGGGTGAAGATGGTGAAATTGATTTTAAGGAGGAAGCTAAGTTTTCAAATCACATGAAGAAGGGAGAAGCTGTAAGTGACTTCGCTATGTCAAAAACTCTTGCTGAGCAAAGGCAATATCTGCCTATTTTTTCAGTGCGAGAAGAGTTATTACAGGTGATTCGAGAAAATCAGGTTGTGGTTGTAGTTGGGGAAACTGGTTCAGGAAAAACAACCCAATTGACA

Protein sequence

>Msa0302890

NSPSPWDHVSPSPVPIRASGSSVKSSVSGYNRRSHKLAFSSENSDTYEEEIADKSDLGEEHKYEITESMRQEMEYDADRAWYDREEGSALFDSDSSSLFLGDEASFQKKEAELAKRLVRRDGTKMSLSQSKKLSQLTADNAQWEDRQLLRSGAVRGTEVQTEFDDEDERKVILLVHDTKPPFLDGRVVYTKQAEPIMPIKDPTSDMALISRKGSALVREIHEKQSSNKSRQRFWELAGSKLGDILGVEKTAEQIDADTAVVGEDGEIDFKEEAKFSNHMKKGEAVSDFAMSKTLAEQRQYLPIFSVREELLQVIRENQVVVVVGETGSGKTTQLT