Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0303230 | ACL36992.1 | 83.451 | 284 | 45 | 1 | 15 | 298 | 1 | 282 | 5.89e-178 | 502 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0303230 | sp|P27054|CHI4_PHAVU | 75.479 | 261 | 57 | 3 | 39 | 298 | 16 | 270 | 9.72e-142 | 403 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0303230 | B8Y647 | 83.451 | 284 | 45 | 1 | 15 | 298 | 1 | 282 | 2.81e-178 | 502 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0232860 | Msa0303230 | 0.803341 | 3.650273e-49 | -8.615850e-47 |
| Msa0303230 | Msa0343590 | 0.808969 | 2.384892e-50 | -8.615850e-47 |
| Msa0303230 | Msa0389050 | 0.801691 | 7.988961e-49 | -8.615850e-47 |
| Msa0303230 | Msa0885100 | 0.814299 | 1.653193e-51 | -8.615850e-47 |
| Msa0303230 | Msa1272960 | 0.806220 | 9.142113e-50 | -8.615850e-47 |
| Msa0303230 | Msa1285820 | 0.829608 | 4.681657e-55 | -8.615850e-47 |
| Msa0303230 | Msa1317710 | 0.808220 | 3.447779e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0303230 | MtrunA17_Chr2g0329791 | 83.099 | 284 | 46 | 1 | 15 | 298 | 1 | 282 | 0.0 | 502 |
| Msa0303230 | MtrunA17_Chr2g0329781 | 90.157 | 254 | 24 | 1 | 46 | 298 | 10 | 263 | 2.45e-175 | 484 |
| Msa0303230 | MtrunA17_Chr3g0145981 | 36.890 | 328 | 151 | 9 | 13 | 298 | 12 | 325 | 7.67e-63 | 202 |
| Msa0303230 | MtrunA17_Chr8g0370851 | 35.873 | 315 | 156 | 8 | 26 | 298 | 3 | 313 | 1.79e-58 | 190 |
| Msa0303230 | MtrunA17_Chr8g0370821 | 39.057 | 297 | 136 | 7 | 44 | 298 | 31 | 324 | 9.79e-57 | 186 |
| Msa0303230 | MtrunA17_Chr7g0270841 | 38.075 | 239 | 112 | 5 | 95 | 298 | 34 | 271 | 1.22e-50 | 168 |
| Msa0303230 | MtrunA17_Chr8g0370831 | 37.370 | 289 | 141 | 9 | 44 | 298 | 20 | 302 | 1.65e-46 | 158 |
| Msa0303230 | MtrunA17_Chr2g0329771 | 74.074 | 81 | 19 | 1 | 15 | 95 | 1 | 79 | 3.31e-35 | 122 |
| Msa0303230 | MtrunA17_Chr2g0329761 | 92.453 | 53 | 4 | 0 | 245 | 297 | 3 | 55 | 3.18e-28 | 103 |
| Msa0303230 | MtrunA17_Chr2g0294721 | 29.461 | 241 | 125 | 9 | 102 | 298 | 62 | 301 | 1.93e-22 | 95.1 |
| Msa0303230 | MtrunA17_Chr1g0206111 | 26.104 | 249 | 139 | 8 | 94 | 298 | 60 | 307 | 1.01e-18 | 84.7 |
| Msa0303230 | MtrunA17_Chr7g0221751 | 26.506 | 249 | 138 | 8 | 94 | 298 | 57 | 304 | 5.75e-18 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0303230 | AT3G54420.1 | 68.214 | 280 | 79 | 2 | 22 | 298 | 1 | 273 | 1.83e-141 | 400 |
| Msa0303230 | AT2G43590.1 | 55.769 | 260 | 103 | 4 | 39 | 298 | 17 | 264 | 3.46e-103 | 302 |
| Msa0303230 | AT2G43580.1 | 54.651 | 258 | 106 | 3 | 41 | 298 | 19 | 265 | 3.78e-99 | 292 |
| Msa0303230 | AT2G43610.1 | 48.561 | 278 | 126 | 7 | 30 | 298 | 12 | 281 | 3.74e-87 | 262 |
| Msa0303230 | AT2G43570.1 | 50.000 | 288 | 127 | 8 | 17 | 298 | 1 | 277 | 6.14e-86 | 259 |
| Msa0303230 | AT2G43620.1 | 44.257 | 296 | 140 | 9 | 15 | 298 | 1 | 283 | 2.02e-82 | 250 |
| Msa0303230 | AT3G47540.1 | 45.575 | 226 | 98 | 6 | 74 | 298 | 13 | 214 | 1.63e-59 | 189 |
| Msa0303230 | AT1G56680.1 | 41.637 | 281 | 140 | 13 | 30 | 298 | 12 | 280 | 2.95e-59 | 191 |
| Msa0303230 | AT1G56680.2 | 39.103 | 312 | 159 | 15 | 5 | 298 | 5 | 303 | 3.29e-59 | 191 |
| Msa0303230 | AT3G47540.2 | 45.045 | 222 | 97 | 6 | 74 | 294 | 13 | 210 | 1.21e-55 | 182 |
| Msa0303230 | AT2G43600.1 | 35.889 | 287 | 157 | 11 | 25 | 298 | 1 | 273 | 1.87e-54 | 178 |
| Msa0303230 | AT2G43600.2 | 35.764 | 288 | 158 | 11 | 24 | 298 | 21 | 294 | 4.81e-54 | 178 |
| Msa0303230 | AT3G12500.1 | 37.500 | 296 | 134 | 9 | 46 | 298 | 33 | 320 | 3.78e-53 | 177 |
| Msa0303230 | AT1G02360.1 | 38.494 | 239 | 111 | 5 | 95 | 298 | 28 | 265 | 3.08e-50 | 167 |
| Msa0303230 | AT1G02360.3 | 38.494 | 239 | 111 | 5 | 95 | 298 | 80 | 317 | 7.60e-50 | 168 |
| Msa0303230 | AT1G02360.2 | 38.494 | 239 | 111 | 5 | 95 | 298 | 74 | 311 | 8.42e-50 | 167 |
| Msa0303230 | AT4G01700.1 | 38.397 | 237 | 110 | 5 | 97 | 298 | 38 | 273 | 1.28e-47 | 161 |
| Msa0303230 | AT1G05850.1 | 27.273 | 220 | 114 | 7 | 120 | 298 | 90 | 304 | 7.01e-20 | 88.6 |
| Msa0303230 | AT1G05850.2 | 27.273 | 220 | 114 | 7 | 120 | 298 | 90 | 304 | 7.01e-20 | 88.6 |
| Msa0303230 | AT3G16920.1 | 27.530 | 247 | 133 | 10 | 97 | 298 | 68 | 313 | 1.92e-18 | 84.7 |
| Msa0303230 | AT3G16920.2 | 27.530 | 247 | 133 | 10 | 97 | 298 | 92 | 337 | 2.18e-18 | 84.7 |
Find 74 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCATCATAGTGATATTT+TGG | 0.124245 | 2_3:+60376003 | None:intergenic |
| GGGTCATTGGCCACTGTTTC+AGG | 0.180604 | 2_3:+60374916 | None:intergenic |
| GTTTGGTAGGGCTGGTTCTT+TGG | 0.230330 | 2_3:-60375628 | Msa0303230:CDS |
| CGGCCATAGTATCCTTTGTT+AGG | 0.267010 | 2_3:+60375015 | None:intergenic |
| ACATTCAAGTCGACCATTAA+TGG | 0.286036 | 2_3:+60374807 | None:intergenic |
| CACTCAATATTGTAGTCAAT+TGG | 0.295638 | 2_3:-60374740 | Msa0303230:CDS |
| GTAAGCGATGCAGTGGTAAA+AGG | 0.355635 | 2_3:+60374572 | None:intergenic |
| TCAAGACAGCATTATGGTAT+TGG | 0.355700 | 2_3:-60374882 | Msa0303230:CDS |
| CTCAGTTCTTATAATCAGTT+TGG | 0.355711 | 2_3:-60375645 | Msa0303230:CDS |
| TTGAGTAAAGATATTTAATC+AGG | 0.383248 | 2_3:+60376033 | None:intergenic |
| ATACCATAATGCTGTCTTGA+AGG | 0.394568 | 2_3:+60374885 | None:intergenic |
| AGCAGCTGCAATCTCACGTT+TGG | 0.398595 | 2_3:+60375599 | None:intergenic |
| GTGGACCGATTCAATTATCT+TGG | 0.404093 | 2_3:-60374993 | Msa0303230:CDS |
| ATACTATAAAATCTATTGTA+TGG | 0.407127 | 2_3:+60374670 | None:intergenic |
| CTTCAATAGTATAATTGATC+AGG | 0.416683 | 2_3:-60375724 | Msa0303230:CDS |
| GCAACGATTAGAGCCATTAA+TGG | 0.421305 | 2_3:-60374820 | Msa0303230:CDS |
| TGCTATATAGAAGAGATTGA+TGG | 0.423190 | 2_3:-60375087 | Msa0303230:CDS |
| AACTTTAACTACGGACCAGC+TGG | 0.429851 | 2_3:-60374970 | Msa0303230:CDS |
| GTTCTTATAATCAGTTTGGT+AGG | 0.432812 | 2_3:-60375641 | Msa0303230:CDS |
| TGTCCTTCAAGACAGCATTA+TGG | 0.433269 | 2_3:-60374888 | Msa0303230:CDS |
| GGCCATAGTATCCTTTGTTA+GGG | 0.434111 | 2_3:+60375016 | None:intergenic |
| TATAATCAGTTTGGTAGGGC+TGG | 0.443568 | 2_3:-60375636 | Msa0303230:CDS |
| GAAGGACACTACAGGGTCAT+TGG | 0.461683 | 2_3:+60374903 | None:intergenic |
| AGTCAATTGGGTGTTGCTCC+TGG | 0.467511 | 2_3:-60374727 | Msa0303230:CDS |
| AATGTCATGAACCAAGGCTT+TGG | 0.470097 | 2_3:-60374844 | Msa0303230:CDS |
| ACTCAATATTGTAGTCAATT+GGG | 0.471459 | 2_3:-60374739 | Msa0303230:CDS |
| TTATCTTGGAACTTTAACTA+CGG | 0.472947 | 2_3:-60374979 | Msa0303230:CDS |
| GCCCCTAACAAAGGATACTA+TGG | 0.486956 | 2_3:-60375018 | Msa0303230:CDS |
| CAGGCTGATTCTAGTTGTGC+TGG | 0.489491 | 2_3:-60375705 | Msa0303230:CDS |
| CCGCATAACAAGGACCTTGT+TGG | 0.494023 | 2_3:+60375817 | None:intergenic |
| TTCTTATAATCAGTTTGGTA+GGG | 0.502766 | 2_3:-60375640 | Msa0303230:CDS |
| AAGTTCCAAGATAATTGAAT+CGG | 0.505654 | 2_3:+60374988 | None:intergenic |
| TAATCGTTGCACCAAAGCCT+TGG | 0.508562 | 2_3:+60374833 | None:intergenic |
| GGTTTATGTTGCAGCGAACA+TGG | 0.524712 | 2_3:-60375879 | Msa0303230:CDS |
| TTGCTAGGACTAGGAGTGCT+AGG | 0.538701 | 2_3:+60375783 | None:intergenic |
| GCTGTCTTGAAGGACACTAC+AGG | 0.540931 | 2_3:+60374895 | None:intergenic |
| AGAGATTGATGGTGCATCAA+AGG | 0.541283 | 2_3:-60375076 | Msa0303230:CDS |
| AAACCATTGTCCTTTCCAGC+TGG | 0.541792 | 2_3:+60374955 | None:intergenic |
| TATCCTTTGTTAGGGGCACA+CGG | 0.544961 | 2_3:+60375024 | None:intergenic |
| CAACAAGGTCCTTGTTATGC+GGG | 0.545745 | 2_3:-60375816 | Msa0303230:CDS |
| AACAAAGGATACTATGGCCG+TGG | 0.546171 | 2_3:-60375012 | Msa0303230:CDS |
| AATGCGAGTGCTCAAAATTG+TGG | 0.565535 | 2_3:-60375912 | Msa0303230:CDS |
| AGTAAAGATATTTAATCAGG+TGG | 0.568569 | 2_3:+60376036 | None:intergenic |
| CAAAATTGTGGGTGTGAGGA+AGG | 0.568606 | 2_3:-60375900 | Msa0303230:CDS |
| GAAATTTGTCCCGCATAACA+AGG | 0.574082 | 2_3:+60375807 | None:intergenic |
| ACACGAGTCTGAACTGTGGT+TGG | 0.575224 | 2_3:+60374772 | None:intergenic |
| ACTGCTGCATATTGTGGCAC+AGG | 0.575567 | 2_3:-60375843 | Msa0303230:CDS |
| AAACTGATTATAAGAACTGA+GGG | 0.575603 | 2_3:+60375647 | None:intergenic |
| TGTGGCACAGGGTGCCAACA+AGG | 0.576717 | 2_3:-60375831 | Msa0303230:CDS |
| TAACTACGGACCAGCTGGAA+AGG | 0.577303 | 2_3:-60374965 | Msa0303230:CDS |
| ATGCGAGTGCTCAAAATTGT+GGG | 0.578430 | 2_3:-60375911 | Msa0303230:CDS |
| ACCACAGTTCAGACTCGTGT+TGG | 0.593974 | 2_3:-60374769 | Msa0303230:CDS |
| CTGTCTTGAAGGACACTACA+GGG | 0.595470 | 2_3:+60374896 | None:intergenic |
| AAGATAATTGAATCGGTCCA+CGG | 0.596870 | 2_3:+60374995 | None:intergenic |
| ATTGAACTCTCCTGAAACAG+TGG | 0.597631 | 2_3:-60374926 | Msa0303230:CDS |
| CCAACAAGGTCCTTGTTATG+CGG | 0.599634 | 2_3:-60375817 | Msa0303230:CDS |
| TGCAGCGAACATGGATATTG+CGG | 0.617236 | 2_3:-60375870 | Msa0303230:CDS |
| AATCAAAGTAAGCGATGCAG+TGG | 0.618796 | 2_3:+60374565 | None:intergenic |
| GGTAACACTGCTGCATATTG+TGG | 0.619860 | 2_3:-60375849 | Msa0303230:CDS |
| TAGCAAGTAAGCTTATCACC+AGG | 0.624987 | 2_3:+60374709 | None:intergenic |
| ATCCTTTGTTAGGGGCACAC+GGG | 0.626336 | 2_3:+60375025 | None:intergenic |
| GCCACATTGACATCATTGCT+AGG | 0.632840 | 2_3:+60375768 | None:intergenic |
| TACCCGTGTGCCCCTAACAA+AGG | 0.636711 | 2_3:-60375027 | Msa0303230:CDS |
| TGCTCAAAATTGTGGGTGTG+AGG | 0.640043 | 2_3:-60375904 | Msa0303230:CDS |
| TTGACATCATTGCTAGGACT+AGG | 0.646089 | 2_3:+60375774 | None:intergenic |
| CAAACTGATTATAAGAACTG+AGG | 0.657351 | 2_3:+60375646 | None:intergenic |
| GGACCAGCTGGAAAGGACAA+TGG | 0.673190 | 2_3:-60374958 | Msa0303230:CDS |
| CTGCTGCATATTGTGGCACA+GGG | 0.674145 | 2_3:-60375842 | Msa0303230:CDS |
| GTGCACAATGTCATGAACCA+AGG | 0.676197 | 2_3:-60374850 | Msa0303230:CDS |
| AATGGTCGACTTGAATGTGA+TGG | 0.677633 | 2_3:-60374802 | Msa0303230:CDS |
| AGCGATGCAGTGGTAAAAGG+AGG | 0.681479 | 2_3:+60374575 | None:intergenic |
| GCCATAGTATCCTTTGTTAG+GGG | 0.697683 | 2_3:+60375017 | None:intergenic |
| TCCTAGCAATGATGTCAATG+TGG | 0.708516 | 2_3:-60375769 | Msa0303230:CDS |
| ACCAACACGAGTCTGAACTG+TGG | 0.761414 | 2_3:+60374768 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACTATAAAATCTATTGTA+TGG | + | chr2_3:60375950-60375969 | None:intergenic | 15.0% |
| !! | ATACTATAAAATCTATTGTA+TGG | + | chr2_3:60375950-60375969 | None:intergenic | 15.0% |
| !! | TTGAGTAAAGATATTTAATC+AGG | + | chr2_3:60374587-60374606 | None:intergenic | 20.0% |
| !!! | AACCATTTTTATTATGATCA+TGG | - | chr2_3:60374674-60374693 | Msa0303230:three_prime_UTR | 20.0% |
| !! | AACCATGATCATAATAAAAA+TGG | + | chr2_3:60374679-60374698 | None:intergenic | 20.0% |
| !! | TTACAATTTCAATGACTTAA+AGG | - | chr2_3:60375251-60375270 | Msa0303230:intron | 20.0% |
| !! | TACAATTTCAATGACTTAAA+GGG | - | chr2_3:60375252-60375271 | Msa0303230:intron | 20.0% |
| !! | TTGAGTAAAGATATTTAATC+AGG | + | chr2_3:60374587-60374606 | None:intergenic | 20.0% |
| !!! | AACCATTTTTATTATGATCA+TGG | - | chr2_3:60374674-60374693 | Msa0303230:three_prime_UTR | 20.0% |
| !! | AACCATGATCATAATAAAAA+TGG | + | chr2_3:60374679-60374698 | None:intergenic | 20.0% |
| !! | TTACAATTTCAATGACTTAA+AGG | - | chr2_3:60375251-60375270 | Msa0303230:intron | 20.0% |
| !! | TACAATTTCAATGACTTAAA+GGG | - | chr2_3:60375252-60375271 | Msa0303230:intron | 20.0% |
| ! | AGTAAAGATATTTAATCAGG+TGG | + | chr2_3:60374584-60374603 | None:intergenic | 25.0% |
| !! | TCTCATCATAGTGATATTTT+GGG | + | chr2_3:60374616-60374635 | None:intergenic | 25.0% |
| !! | TTCTCATCATAGTGATATTT+TGG | + | chr2_3:60374617-60374636 | None:intergenic | 25.0% |
| ! | CTTCAATAGTATAATTGATC+AGG | - | chr2_3:60374893-60374912 | Msa0303230:CDS | 25.0% |
| ! | AAACTGATTATAAGAACTGA+GGG | + | chr2_3:60374973-60374992 | None:intergenic | 25.0% |
| ! | TTCTTATAATCAGTTTGGTA+GGG | - | chr2_3:60374977-60374996 | Msa0303230:CDS | 25.0% |
| ! | AACAAGAATTGAACTAAATG+AGG | + | chr2_3:60375347-60375366 | None:intergenic | 25.0% |
| ! | ATAAGCTATATGATTTGACT+AGG | - | chr2_3:60375374-60375393 | Msa0303230:intron | 25.0% |
| ! | AAGTTCCAAGATAATTGAAT+CGG | + | chr2_3:60375632-60375651 | None:intergenic | 25.0% |
| ! | TTATCTTGGAACTTTAACTA+CGG | - | chr2_3:60375638-60375657 | Msa0303230:CDS | 25.0% |
| ! | ACTCAATATTGTAGTCAATT+GGG | - | chr2_3:60375878-60375897 | Msa0303230:CDS | 25.0% |
| ! | AGTAAAGATATTTAATCAGG+TGG | + | chr2_3:60374584-60374603 | None:intergenic | 25.0% |
| !! | TCTCATCATAGTGATATTTT+GGG | + | chr2_3:60374616-60374635 | None:intergenic | 25.0% |
| !! | TTCTCATCATAGTGATATTT+TGG | + | chr2_3:60374617-60374636 | None:intergenic | 25.0% |
| ! | CTTCAATAGTATAATTGATC+AGG | - | chr2_3:60374893-60374912 | Msa0303230:CDS | 25.0% |
| ! | AAACTGATTATAAGAACTGA+GGG | + | chr2_3:60374973-60374992 | None:intergenic | 25.0% |
| ! | TTCTTATAATCAGTTTGGTA+GGG | - | chr2_3:60374977-60374996 | Msa0303230:CDS | 25.0% |
| ! | AACAAGAATTGAACTAAATG+AGG | + | chr2_3:60375347-60375366 | None:intergenic | 25.0% |
| ! | ATAAGCTATATGATTTGACT+AGG | - | chr2_3:60375374-60375393 | Msa0303230:intron | 25.0% |
| ! | AAGTTCCAAGATAATTGAAT+CGG | + | chr2_3:60375632-60375651 | None:intergenic | 25.0% |
| ! | TTATCTTGGAACTTTAACTA+CGG | - | chr2_3:60375638-60375657 | Msa0303230:CDS | 25.0% |
| ! | ACTCAATATTGTAGTCAATT+GGG | - | chr2_3:60375878-60375897 | Msa0303230:CDS | 25.0% |
| !! | ATCATAGTGATATTTTGGGT+GGG | + | chr2_3:60374612-60374631 | None:intergenic | 30.0% |
| CAAACTGATTATAAGAACTG+AGG | + | chr2_3:60374974-60374993 | None:intergenic | 30.0% | |
| CTCAGTTCTTATAATCAGTT+TGG | - | chr2_3:60374972-60374991 | Msa0303230:CDS | 30.0% | |
| GTTCTTATAATCAGTTTGGT+AGG | - | chr2_3:60374976-60374995 | Msa0303230:CDS | 30.0% | |
| ATGTTGAGAAACTGAGAAAA+TGG | + | chr2_3:60375475-60375494 | None:intergenic | 30.0% | |
| TGCTATATAGAAGAGATTGA+TGG | - | chr2_3:60375530-60375549 | Msa0303230:intron | 30.0% | |
| CACTCAATATTGTAGTCAAT+TGG | - | chr2_3:60375877-60375896 | Msa0303230:CDS | 30.0% | |
| !! | ATCATAGTGATATTTTGGGT+GGG | + | chr2_3:60374612-60374631 | None:intergenic | 30.0% |
| CAAACTGATTATAAGAACTG+AGG | + | chr2_3:60374974-60374993 | None:intergenic | 30.0% | |
| CTCAGTTCTTATAATCAGTT+TGG | - | chr2_3:60374972-60374991 | Msa0303230:CDS | 30.0% | |
| GTTCTTATAATCAGTTTGGT+AGG | - | chr2_3:60374976-60374995 | Msa0303230:CDS | 30.0% | |
| ATGTTGAGAAACTGAGAAAA+TGG | + | chr2_3:60375475-60375494 | None:intergenic | 30.0% | |
| TGCTATATAGAAGAGATTGA+TGG | - | chr2_3:60375530-60375549 | Msa0303230:intron | 30.0% | |
| CACTCAATATTGTAGTCAAT+TGG | - | chr2_3:60375877-60375896 | Msa0303230:CDS | 30.0% | |
| !! | CATCATAGTGATATTTTGGG+TGG | + | chr2_3:60374613-60374632 | None:intergenic | 35.0% |
| ACTTTGATTAGCATTCAGCT+TGG | - | chr2_3:60375295-60375314 | Msa0303230:intron | 35.0% | |
| AAGATAATTGAATCGGTCCA+CGG | + | chr2_3:60375625-60375644 | None:intergenic | 35.0% | |
| ATACCATAATGCTGTCTTGA+AGG | + | chr2_3:60375735-60375754 | None:intergenic | 35.0% | |
| TCAAGACAGCATTATGGTAT+TGG | - | chr2_3:60375735-60375754 | Msa0303230:CDS | 35.0% | |
| ACATTCAAGTCGACCATTAA+TGG | + | chr2_3:60375813-60375832 | None:intergenic | 35.0% | |
| !! | CATCATAGTGATATTTTGGG+TGG | + | chr2_3:60374613-60374632 | None:intergenic | 35.0% |
| ACTTTGATTAGCATTCAGCT+TGG | - | chr2_3:60375295-60375314 | Msa0303230:intron | 35.0% | |
| AAGATAATTGAATCGGTCCA+CGG | + | chr2_3:60375625-60375644 | None:intergenic | 35.0% | |
| ATACCATAATGCTGTCTTGA+AGG | + | chr2_3:60375735-60375754 | None:intergenic | 35.0% | |
| TCAAGACAGCATTATGGTAT+TGG | - | chr2_3:60375735-60375754 | Msa0303230:CDS | 35.0% | |
| ACATTCAAGTCGACCATTAA+TGG | + | chr2_3:60375813-60375832 | None:intergenic | 35.0% | |
| AATGCGAGTGCTCAAAATTG+TGG | - | chr2_3:60374705-60374724 | Msa0303230:exon | 40.0% | |
| ATGCGAGTGCTCAAAATTGT+GGG | - | chr2_3:60374706-60374725 | Msa0303230:exon | 40.0% | |
| GAAATTTGTCCCGCATAACA+AGG | + | chr2_3:60374813-60374832 | None:intergenic | 40.0% | |
| TTGACATCATTGCTAGGACT+AGG | + | chr2_3:60374846-60374865 | None:intergenic | 40.0% | |
| TCCTAGCAATGATGTCAATG+TGG | - | chr2_3:60374848-60374867 | Msa0303230:CDS | 40.0% | |
| TATAATCAGTTTGGTAGGGC+TGG | - | chr2_3:60374981-60375000 | Msa0303230:CDS | 40.0% | |
| !! | AGAGATTGATGGTGCATCAA+AGG | - | chr2_3:60375541-60375560 | Msa0303230:intron | 40.0% |
| GCCATAGTATCCTTTGTTAG+GGG | + | chr2_3:60375603-60375622 | None:intergenic | 40.0% | |
| GGCCATAGTATCCTTTGTTA+GGG | + | chr2_3:60375604-60375623 | None:intergenic | 40.0% | |
| ! | GTGGACCGATTCAATTATCT+TGG | - | chr2_3:60375624-60375643 | Msa0303230:CDS | 40.0% |
| !!! | GGAAAGGACAATGGTTTTGA+TGG | - | chr2_3:60375668-60375687 | Msa0303230:CDS | 40.0% |
| ATTGAACTCTCCTGAAACAG+TGG | - | chr2_3:60375691-60375710 | Msa0303230:CDS | 40.0% | |
| TGTCCTTCAAGACAGCATTA+TGG | - | chr2_3:60375729-60375748 | Msa0303230:CDS | 40.0% | |
| AATGTCATGAACCAAGGCTT+TGG | - | chr2_3:60375773-60375792 | Msa0303230:CDS | 40.0% | |
| GCAACGATTAGAGCCATTAA+TGG | - | chr2_3:60375797-60375816 | Msa0303230:CDS | 40.0% | |
| !! | AATGGTCGACTTGAATGTGA+TGG | - | chr2_3:60375815-60375834 | Msa0303230:CDS | 40.0% |
| TAGCAAGTAAGCTTATCACC+AGG | + | chr2_3:60375911-60375930 | None:intergenic | 40.0% | |
| AATGCGAGTGCTCAAAATTG+TGG | - | chr2_3:60374705-60374724 | Msa0303230:exon | 40.0% | |
| ATGCGAGTGCTCAAAATTGT+GGG | - | chr2_3:60374706-60374725 | Msa0303230:exon | 40.0% | |
| GAAATTTGTCCCGCATAACA+AGG | + | chr2_3:60374813-60374832 | None:intergenic | 40.0% | |
| TTGACATCATTGCTAGGACT+AGG | + | chr2_3:60374846-60374865 | None:intergenic | 40.0% | |
| TCCTAGCAATGATGTCAATG+TGG | - | chr2_3:60374848-60374867 | Msa0303230:CDS | 40.0% | |
| TATAATCAGTTTGGTAGGGC+TGG | - | chr2_3:60374981-60375000 | Msa0303230:CDS | 40.0% | |
| !! | AGAGATTGATGGTGCATCAA+AGG | - | chr2_3:60375541-60375560 | Msa0303230:intron | 40.0% |
| GCCATAGTATCCTTTGTTAG+GGG | + | chr2_3:60375603-60375622 | None:intergenic | 40.0% | |
| GGCCATAGTATCCTTTGTTA+GGG | + | chr2_3:60375604-60375623 | None:intergenic | 40.0% | |
| ! | GTGGACCGATTCAATTATCT+TGG | - | chr2_3:60375624-60375643 | Msa0303230:CDS | 40.0% |
| !!! | GGAAAGGACAATGGTTTTGA+TGG | - | chr2_3:60375668-60375687 | Msa0303230:CDS | 40.0% |
| ATTGAACTCTCCTGAAACAG+TGG | - | chr2_3:60375691-60375710 | Msa0303230:CDS | 40.0% | |
| TGTCCTTCAAGACAGCATTA+TGG | - | chr2_3:60375729-60375748 | Msa0303230:CDS | 40.0% | |
| AATGTCATGAACCAAGGCTT+TGG | - | chr2_3:60375773-60375792 | Msa0303230:CDS | 40.0% | |
| GCAACGATTAGAGCCATTAA+TGG | - | chr2_3:60375797-60375816 | Msa0303230:CDS | 40.0% | |
| !! | AATGGTCGACTTGAATGTGA+TGG | - | chr2_3:60375815-60375834 | Msa0303230:CDS | 40.0% |
| TAGCAAGTAAGCTTATCACC+AGG | + | chr2_3:60375911-60375930 | None:intergenic | 40.0% | |
| TGCTCAAAATTGTGGGTGTG+AGG | - | chr2_3:60374713-60374732 | Msa0303230:CDS | 45.0% | |
| CAAAATTGTGGGTGTGAGGA+AGG | - | chr2_3:60374717-60374736 | Msa0303230:CDS | 45.0% | |
| GGTTTATGTTGCAGCGAACA+TGG | - | chr2_3:60374738-60374757 | Msa0303230:CDS | 45.0% | |
| TGCAGCGAACATGGATATTG+CGG | - | chr2_3:60374747-60374766 | Msa0303230:CDS | 45.0% | |
| GGTAACACTGCTGCATATTG+TGG | - | chr2_3:60374768-60374787 | Msa0303230:CDS | 45.0% | |
| ! | CCAACAAGGTCCTTGTTATG+CGG | - | chr2_3:60374800-60374819 | Msa0303230:CDS | 45.0% |
| ! | CAACAAGGTCCTTGTTATGC+GGG | - | chr2_3:60374801-60374820 | Msa0303230:CDS | 45.0% |
| GCCACATTGACATCATTGCT+AGG | + | chr2_3:60374852-60374871 | None:intergenic | 45.0% | |
| ! | TATCCTTTGTTAGGGGCACA+CGG | + | chr2_3:60375596-60375615 | None:intergenic | 45.0% |
| GCCCCTAACAAAGGATACTA+TGG | - | chr2_3:60375599-60375618 | Msa0303230:CDS | 45.0% | |
| CGGCCATAGTATCCTTTGTT+AGG | + | chr2_3:60375605-60375624 | None:intergenic | 45.0% | |
| AACAAAGGATACTATGGCCG+TGG | - | chr2_3:60375605-60375624 | Msa0303230:CDS | 45.0% | |
| AACTTTAACTACGGACCAGC+TGG | - | chr2_3:60375647-60375666 | Msa0303230:CDS | 45.0% | |
| AAACCATTGTCCTTTCCAGC+TGG | + | chr2_3:60375665-60375684 | None:intergenic | 45.0% | |
| CTGTCTTGAAGGACACTACA+GGG | + | chr2_3:60375724-60375743 | None:intergenic | 45.0% | |
| GTGCACAATGTCATGAACCA+AGG | - | chr2_3:60375767-60375786 | Msa0303230:CDS | 45.0% | |
| TAATCGTTGCACCAAAGCCT+TGG | + | chr2_3:60375787-60375806 | None:intergenic | 45.0% | |
| TGCTCAAAATTGTGGGTGTG+AGG | - | chr2_3:60374713-60374732 | Msa0303230:CDS | 45.0% | |
| CAAAATTGTGGGTGTGAGGA+AGG | - | chr2_3:60374717-60374736 | Msa0303230:CDS | 45.0% | |
| GGTTTATGTTGCAGCGAACA+TGG | - | chr2_3:60374738-60374757 | Msa0303230:CDS | 45.0% | |
| TGCAGCGAACATGGATATTG+CGG | - | chr2_3:60374747-60374766 | Msa0303230:CDS | 45.0% | |
| GGTAACACTGCTGCATATTG+TGG | - | chr2_3:60374768-60374787 | Msa0303230:CDS | 45.0% | |
| ! | CCAACAAGGTCCTTGTTATG+CGG | - | chr2_3:60374800-60374819 | Msa0303230:CDS | 45.0% |
| ! | CAACAAGGTCCTTGTTATGC+GGG | - | chr2_3:60374801-60374820 | Msa0303230:CDS | 45.0% |
| GCCACATTGACATCATTGCT+AGG | + | chr2_3:60374852-60374871 | None:intergenic | 45.0% | |
| ! | TATCCTTTGTTAGGGGCACA+CGG | + | chr2_3:60375596-60375615 | None:intergenic | 45.0% |
| GCCCCTAACAAAGGATACTA+TGG | - | chr2_3:60375599-60375618 | Msa0303230:CDS | 45.0% | |
| CGGCCATAGTATCCTTTGTT+AGG | + | chr2_3:60375605-60375624 | None:intergenic | 45.0% | |
| AACAAAGGATACTATGGCCG+TGG | - | chr2_3:60375605-60375624 | Msa0303230:CDS | 45.0% | |
| AACTTTAACTACGGACCAGC+TGG | - | chr2_3:60375647-60375666 | Msa0303230:CDS | 45.0% | |
| AAACCATTGTCCTTTCCAGC+TGG | + | chr2_3:60375665-60375684 | None:intergenic | 45.0% | |
| CTGTCTTGAAGGACACTACA+GGG | + | chr2_3:60375724-60375743 | None:intergenic | 45.0% | |
| GTGCACAATGTCATGAACCA+AGG | - | chr2_3:60375767-60375786 | Msa0303230:CDS | 45.0% | |
| TAATCGTTGCACCAAAGCCT+TGG | + | chr2_3:60375787-60375806 | None:intergenic | 45.0% | |
| ACTGCTGCATATTGTGGCAC+AGG | - | chr2_3:60374774-60374793 | Msa0303230:CDS | 50.0% | |
| CTGCTGCATATTGTGGCACA+GGG | - | chr2_3:60374775-60374794 | Msa0303230:CDS | 50.0% | |
| CCGCATAACAAGGACCTTGT+TGG | + | chr2_3:60374803-60374822 | None:intergenic | 50.0% | |
| !! | TTGCTAGGACTAGGAGTGCT+AGG | + | chr2_3:60374837-60374856 | None:intergenic | 50.0% |
| ! | CAGGCTGATTCTAGTTGTGC+TGG | - | chr2_3:60374912-60374931 | Msa0303230:CDS | 50.0% |
| !! | GTTTGGTAGGGCTGGTTCTT+TGG | - | chr2_3:60374989-60375008 | Msa0303230:CDS | 50.0% |
| AGCAGCTGCAATCTCACGTT+TGG | + | chr2_3:60375021-60375040 | None:intergenic | 50.0% | |
| ! | ATCCTTTGTTAGGGGCACAC+GGG | + | chr2_3:60375595-60375614 | None:intergenic | 50.0% |
| TAACTACGGACCAGCTGGAA+AGG | - | chr2_3:60375652-60375671 | Msa0303230:CDS | 50.0% | |
| GAAGGACACTACAGGGTCAT+TGG | + | chr2_3:60375717-60375736 | None:intergenic | 50.0% | |
| GCTGTCTTGAAGGACACTAC+AGG | + | chr2_3:60375725-60375744 | None:intergenic | 50.0% | |
| ACACGAGTCTGAACTGTGGT+TGG | + | chr2_3:60375848-60375867 | None:intergenic | 50.0% | |
| ACCACAGTTCAGACTCGTGT+TGG | - | chr2_3:60375848-60375867 | Msa0303230:CDS | 50.0% | |
| ACCAACACGAGTCTGAACTG+TGG | + | chr2_3:60375852-60375871 | None:intergenic | 50.0% | |
| !! | AGTCAATTGGGTGTTGCTCC+TGG | - | chr2_3:60375890-60375909 | Msa0303230:CDS | 50.0% |
| ACTGCTGCATATTGTGGCAC+AGG | - | chr2_3:60374774-60374793 | Msa0303230:CDS | 50.0% | |
| CTGCTGCATATTGTGGCACA+GGG | - | chr2_3:60374775-60374794 | Msa0303230:CDS | 50.0% | |
| CCGCATAACAAGGACCTTGT+TGG | + | chr2_3:60374803-60374822 | None:intergenic | 50.0% | |
| !! | TTGCTAGGACTAGGAGTGCT+AGG | + | chr2_3:60374837-60374856 | None:intergenic | 50.0% |
| ! | CAGGCTGATTCTAGTTGTGC+TGG | - | chr2_3:60374912-60374931 | Msa0303230:CDS | 50.0% |
| !! | GTTTGGTAGGGCTGGTTCTT+TGG | - | chr2_3:60374989-60375008 | Msa0303230:CDS | 50.0% |
| AGCAGCTGCAATCTCACGTT+TGG | + | chr2_3:60375021-60375040 | None:intergenic | 50.0% | |
| ! | ATCCTTTGTTAGGGGCACAC+GGG | + | chr2_3:60375595-60375614 | None:intergenic | 50.0% |
| TAACTACGGACCAGCTGGAA+AGG | - | chr2_3:60375652-60375671 | Msa0303230:CDS | 50.0% | |
| GAAGGACACTACAGGGTCAT+TGG | + | chr2_3:60375717-60375736 | None:intergenic | 50.0% | |
| GCTGTCTTGAAGGACACTAC+AGG | + | chr2_3:60375725-60375744 | None:intergenic | 50.0% | |
| ACACGAGTCTGAACTGTGGT+TGG | + | chr2_3:60375848-60375867 | None:intergenic | 50.0% | |
| ACCACAGTTCAGACTCGTGT+TGG | - | chr2_3:60375848-60375867 | Msa0303230:CDS | 50.0% | |
| ACCAACACGAGTCTGAACTG+TGG | + | chr2_3:60375852-60375871 | None:intergenic | 50.0% | |
| !! | AGTCAATTGGGTGTTGCTCC+TGG | - | chr2_3:60375890-60375909 | Msa0303230:CDS | 50.0% |
| TACCCGTGTGCCCCTAACAA+AGG | - | chr2_3:60375590-60375609 | Msa0303230:CDS | 55.0% | |
| GGACCAGCTGGAAAGGACAA+TGG | - | chr2_3:60375659-60375678 | Msa0303230:CDS | 55.0% | |
| GGGTCATTGGCCACTGTTTC+AGG | + | chr2_3:60375704-60375723 | None:intergenic | 55.0% | |
| TACCCGTGTGCCCCTAACAA+AGG | - | chr2_3:60375590-60375609 | Msa0303230:CDS | 55.0% | |
| GGACCAGCTGGAAAGGACAA+TGG | - | chr2_3:60375659-60375678 | Msa0303230:CDS | 55.0% | |
| GGGTCATTGGCCACTGTTTC+AGG | + | chr2_3:60375704-60375723 | None:intergenic | 55.0% | |
| ! | TGTGGCACAGGGTGCCAACA+AGG | - | chr2_3:60374786-60374805 | Msa0303230:CDS | 60.0% |
| ! | TGTGGCACAGGGTGCCAACA+AGG | - | chr2_3:60374786-60374805 | Msa0303230:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 60374579 | 60376060 | 60374579 | ID=Msa0303230;Name=Msa0303230 |
| chr2_3 | mRNA | 60374579 | 60376060 | 60374579 | ID=Msa0303230-mRNA-1;Parent=Msa0303230;Name=Msa0303230-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|1|1|1|1|1|2|129|298 |
| chr2_3 | exon | 60374579 | 60375114 | 60374579 | ID=Msa0303230-mRNA-1:exon:19677;Parent=Msa0303230-mRNA-1 |
| chr2_3 | exon | 60375571 | 60376060 | 60375571 | ID=Msa0303230-mRNA-1:exon:19676;Parent=Msa0303230-mRNA-1 |
| chr2_3 | CDS | 60375571 | 60376060 | 60375571 | ID=Msa0303230-mRNA-1:cds;Parent=Msa0303230-mRNA-1 |
| chr2_3 | CDS | 60374708 | 60375114 | 60374708 | ID=Msa0303230-mRNA-1:cds;Parent=Msa0303230-mRNA-1 |
| chr2_3 | three_prime_UTR | 60374579 | 60374707 | 60374579 | ID=Msa0303230-mRNA-1:three_prime_utr;Parent=Msa0303230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
