AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1317710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1317710 MtrunA17_Chr8g0348281 86.831 243 15 3 42 282 1 228 7.69e-154 428
Msa1317710 MtrunA17_Chr4g0019181 93.506 77 5 0 152 228 92 168 1.35e-48 159
Msa1317710 MtrunA17_Chr4g0019171 82.558 86 10 1 42 122 1 86 1.43e-42 140
Msa1317710 MtrunA17_Chr1g0190931 26.267 217 152 4 54 263 17 232 5.79e-19 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1317710 AT2G46100.1 58.848 243 83 3 35 268 1 235 2.18e-102 299
Msa1317710 AT2G46100.2 50.279 179 72 3 36 205 2 172 4.74e-52 170
Msa1317710 AT3G04890.3 35.664 143 86 3 134 272 80 220 4.17e-22 92.0
Msa1317710 AT3G04890.1 35.664 143 86 3 134 272 76 216 4.47e-22 92.0
Msa1317710 AT3G04890.4 31.496 127 75 2 134 248 80 206 3.20e-15 73.6
Msa1317710 AT3G04890.2 31.496 127 75 2 134 248 76 202 3.32e-15 73.6

Find 62 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGGAGACCTATTCTTTC+TGG 0.087001 8_4:-19251684 Msa1317710:intron
AAAAGGAACTGCACTAATTT+TGG 0.093922 8_4:-19252154 Msa1317710:CDS
TGTTCTCTTGTTTAGTTTCA+TGG 0.194002 8_4:-19253773 Msa1317710:CDS
GTTGTTGTGATTCTTGATTT+TGG 0.266903 8_4:+19253623 None:intergenic
AAAGTTTGCTTAATTATTGA+TGG 0.269237 8_4:-19250872 Msa1317710:three_prime_UTR
AGGAATATCCTGTATATATA+TGG 0.323875 8_4:-19251010 Msa1317710:three_prime_UTR
TGCATTGAATTTGAAACCTA+TGG 0.325155 8_4:+19253656 None:intergenic
TATGGTTTACCAGATTAATT+AGG 0.325566 8_4:-19250992 Msa1317710:three_prime_UTR
TTGTGGTGATGATGTTGTTT+TGG 0.338335 8_4:+19253691 None:intergenic
ACAGAACAATGTATTTCTTA+AGG 0.354819 8_4:-19253602 Msa1317710:CDS
CTTTGTTCAAGCAAATTCTA+AGG 0.368956 8_4:-19251206 Msa1317710:CDS
TGGTATAGTTCTGAGCTTCT+AGG 0.369490 8_4:-19253574 Msa1317710:CDS
GCTGTATCTTGTCCTTTCCT+TGG 0.372617 8_4:-19251701 Msa1317710:CDS
CACATGTAAGTCTGTGGTAT+TGG 0.388973 8_4:-19251078 Msa1317710:three_prime_UTR
CTGTGACAAAATAAGATCTT+TGG 0.390504 8_4:+19253440 None:intergenic
CCATGACAGGATAAAGGAAT+TGG 0.428536 8_4:-19251738 Msa1317710:intron
TTTGCTCCATGACAGGATAA+AGG 0.440137 8_4:-19251744 Msa1317710:intron
ATTCACAGACCTAATTAATC+TGG 0.444076 8_4:+19250983 None:intergenic
CTGGTAAACCATATATATAC+AGG 0.446381 8_4:+19251002 None:intergenic
GTACTAATTATAGAAGTCTA+TGG 0.447623 8_4:-19251052 Msa1317710:three_prime_UTR
AAGGACTTCAACGTTTCAAA+AGG 0.458374 8_4:-19252171 Msa1317710:CDS
TTGAAGTTGTCCAAGTGAAT+AGG 0.459855 8_4:-19251141 Msa1317710:exon
TGAGATTTACCAGAAAGAAT+AGG 0.461380 8_4:+19251675 None:intergenic
CGTTCAGGCATGTGGAGCAT+TGG 0.464069 8_4:-19251245 Msa1317710:intron
GTGGTGATGGTTGTGACTAA+TGG 0.469661 8_4:+19253732 None:intergenic
TGAAGAGGATTGTGAATTTG+CGG 0.489339 8_4:-19252212 Msa1317710:CDS
TTTAAGCTAAATCCCTTGCT+AGG 0.497530 8_4:+19251183 None:intergenic
ATTAATTAGGTCTGTGAATG+TGG 0.499247 8_4:-19250979 Msa1317710:three_prime_UTR
GTAAAATTTAAATACAAGGC+AGG 0.505184 8_4:-19253841 Msa1317710:CDS
TTATAATTTACCTATTCACT+TGG 0.507238 8_4:+19251131 None:intergenic
AGGTTTCAAATTCAATGCAA+TGG 0.509267 8_4:-19253652 Msa1317710:CDS
TTATGTAAAATTTAAATACA+AGG 0.512231 8_4:-19253845 Msa1317710:CDS
TGTTAGAATCTAAGAACAAA+CGG 0.513330 8_4:+19253812 None:intergenic
ATGTATTTCTTAAGGTTGCA+TGG 0.514798 8_4:-19253594 Msa1317710:CDS
GAAGCTTCTTCTTCAACAGA+TGG 0.522340 8_4:+19253526 None:intergenic
TTCTATGGTGAACTCTATCA+AGG 0.526181 8_4:+19254022 Msa1317720:five_prime_UTR
GTAGGAGCTTATGATGTACT+AGG 0.528168 8_4:-19251030 Msa1317710:three_prime_UTR
TACAACAGAAGCACGATCAA+TGG 0.528751 8_4:+19253483 None:intergenic
CAACTATGAATCTTATGAAG+TGG 0.531678 8_4:-19252114 Msa1317710:CDS
TGTGAATTTGCGGATCCAGC+GGG 0.538988 8_4:-19252202 Msa1317710:CDS
CACATTGAATGCATATGAAG+AGG 0.540073 8_4:-19252227 Msa1317710:CDS
AACTATGAATCTTATGAAGT+GGG 0.541276 8_4:-19252113 Msa1317710:CDS
CAAAATCAGGAAAAGTATGC+AGG 0.545705 8_4:-19251347 Msa1317710:intron
AGGATAAAGGAATTGGTCAC+TGG 0.548719 8_4:-19251731 Msa1317710:CDS
GCAAATTCTAAGGCCTAGCA+AGG 0.551037 8_4:-19251196 Msa1317710:CDS
CCTGAAAACGTTCAGGCATG+TGG 0.565673 8_4:-19251253 Msa1317710:intron
CTTCTTCAACAGATGGAGAA+CGG 0.568481 8_4:+19253533 None:intergenic
CCAGAAAGAATAGGTCTCCA+AGG 0.570816 8_4:+19251684 None:intergenic
TAATTATAGAAGTCTATGGT+AGG 0.578652 8_4:-19251048 Msa1317710:three_prime_UTR
TTAAAATAACAGCTCTAGTG+TGG 0.582268 8_4:+19253918 Msa1317720:five_prime_UTR
AAGAATAGGTCTCCAAGGAA+AGG 0.586808 8_4:+19251689 None:intergenic
GCTTAAAAGATTATGTGACT+AGG 0.588291 8_4:-19251167 Msa1317710:CDS
AGAACAAAGAAGTGTGGTGA+TGG 0.594904 8_4:+19253719 None:intergenic
ATTATACACATGTAAGTCTG+TGG 0.609997 8_4:-19251084 Msa1317710:three_prime_UTR
TTGTGAATTTGCGGATCCAG+CGG 0.612444 8_4:-19252203 Msa1317710:CDS
AGTCCTTTAAAAGATCCCGC+TGG 0.619834 8_4:+19252187 None:intergenic
TAATATATGCTGCAGCAACT+GGG 0.621935 8_4:-19251392 Msa1317710:intron
TAAAAGATTATGTGACTAGG+TGG 0.630969 8_4:-19251164 Msa1317710:CDS
AAATTTAAATACAAGGCAGG+TGG 0.662495 8_4:-19253838 Msa1317710:CDS
CAAATTCTAAGGCCTAGCAA+GGG 0.670959 8_4:-19251195 Msa1317710:CDS
ATGGTTTGAAGAAGTCTCTG+TGG 0.682726 8_4:+19253502 None:intergenic
GTGCAAAGAACAAAGAAGTG+TGG 0.724805 8_4:+19253713 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATGTAAAATTTAAATACA+AGG - chr8_4:19251031-19251050 Msa1317710:three_prime_UTR 10.0%
!!! GTTTCTAAAAAAAAAAAAAA+AGG - chr8_4:19252016-19252035 Msa1317710:intron 10.0%
!! ATAAAAAATTGAATCTTCTA+TGG + chr8_4:19250872-19250891 None:intergenic 15.0%
!!! TATAGTTTCAATTTTAAGTA+TGG - chr8_4:19251548-19251567 Msa1317710:intron 15.0%
!!! TCAAATTTGTTAGTTTAATT+AGG + chr8_4:19252057-19252076 None:intergenic 15.0%
!!! GTATTTTGATTATAATCAAA+TGG - chr8_4:19252585-19252604 Msa1317710:intron 15.0%
!!! AATTTAATTTTGTTCATCAA+TGG + chr8_4:19253257-19253276 None:intergenic 15.0%
!! ACAATATCATAAATCTCTAA+CGG - chr8_4:19252129-19252148 Msa1317710:CDS 20.0%
!!! TACTACTCAATAATGTTTTA+GGG - chr8_4:19252417-19252436 Msa1317710:intron 20.0%
!!! TTTTGTATCAGTCATTATAT+AGG + chr8_4:19252534-19252553 None:intergenic 20.0%
!! ATGTTCAAATTAACATGAAT+CGG - chr8_4:19253367-19253386 Msa1317710:intron 20.0%
!!! TACTATTTTGATACAAAATC+AGG - chr8_4:19253516-19253535 Msa1317710:CDS 20.0%
!! TTATAATTTACCTATTCACT+TGG + chr8_4:19253748-19253767 None:intergenic 20.0%
!!! AAAGTTTGCTTAATTATTGA+TGG - chr8_4:19254004-19254023 Msa1317710:five_prime_UTR 20.0%
! GTAAAATTTAAATACAAGGC+AGG - chr8_4:19251035-19251054 Msa1317710:three_prime_UTR 25.0%
! TGTTAGAATCTAAGAACAAA+CGG + chr8_4:19251067-19251086 None:intergenic 25.0%
!!! TATGGATTTTTGTGTTATTG+TGG + chr8_4:19251205-19251224 None:intergenic 25.0%
! ACAATAACACAAAAATCCAT+AGG - chr8_4:19251204-19251223 Msa1317710:CDS 25.0%
! ACAGAACAATGTATTTCTTA+AGG - chr8_4:19251274-19251293 Msa1317710:intron 25.0%
! AGAAAACAAAGGAAACAAAT+TGG + chr8_4:19251502-19251521 None:intergenic 25.0%
!!! TGTCTTTTTTACACATCATT+TGG - chr8_4:19251584-19251603 Msa1317710:intron 25.0%
!! GAGAAAAAGTTGATTACAAT+CGG - chr8_4:19251834-19251853 Msa1317710:intron 25.0%
! TGTTAAATGTAGTTAGAAGT+TGG + chr8_4:19252102-19252121 None:intergenic 25.0%
!!! ATTGCTATTTTAAGCACTTA+CGG + chr8_4:19252246-19252265 None:intergenic 25.0%
! TGCTTAAAATAGCAATACAA+AGG - chr8_4:19252250-19252269 Msa1317710:intron 25.0%
!! GTACTACTCAATAATGTTTT+AGG - chr8_4:19252416-19252435 Msa1317710:intron 25.0%
! CAAAATGAAGCTAATACAAT+TGG - chr8_4:19252549-19252568 Msa1317710:intron 25.0%
! TTATAATCAAATGGTTCACA+TGG - chr8_4:19252594-19252613 Msa1317710:intron 25.0%
! AACTATGAATCTTATGAAGT+GGG - chr8_4:19252763-19252782 Msa1317710:intron 25.0%
!! AATATAGAGTTTTGCAACTT+AGG - chr8_4:19252835-19252854 Msa1317710:intron 25.0%
!! TCAATCTTTTTATTGAGTGT+TGG - chr8_4:19253072-19253091 Msa1317710:intron 25.0%
! CTCAATCTATTAGATATACA+TGG + chr8_4:19253234-19253253 None:intergenic 25.0%
! TGTTCAAATTAACATGAATC+GGG - chr8_4:19253368-19253387 Msa1317710:intron 25.0%
! GTACTAATTATAGAAGTCTA+TGG - chr8_4:19253824-19253843 Msa1317710:CDS 25.0%
! TAATTATAGAAGTCTATGGT+AGG - chr8_4:19253828-19253847 Msa1317710:CDS 25.0%
! AGGAATATCCTGTATATATA+TGG - chr8_4:19253866-19253885 Msa1317710:CDS 25.0%
! TATGGTTTACCAGATTAATT+AGG - chr8_4:19253884-19253903 Msa1317710:exon 25.0%
!!! CTTTTCACTGTTATTTTTTC+TGG + chr8_4:19253931-19253950 Msa1317720:five_prime_UTR 25.0%
! CAGAAAAAATAACAGTGAAA+AGG - chr8_4:19253929-19253948 Msa1317710:five_prime_UTR 25.0%
!!! CTTCATTTTTTTTTGTGACG+TGG - chr8_4:19250904-19250923 Msa1317710:three_prime_UTR 30.0%
!!! TTTTTTTTGTGACGTGGATT+TGG - chr8_4:19250910-19250929 Msa1317710:three_prime_UTR 30.0%
! TTAAAATAACAGCTCTAGTG+TGG + chr8_4:19250961-19250980 None:intergenic 30.0%
! CCACATAAAAATGGTGATTT+TGG + chr8_4:19250985-19251004 None:intergenic 30.0%
!! CCAAAATCACCATTTTTATG+TGG - chr8_4:19250982-19251001 Msa1317710:three_prime_UTR 30.0%
TAATGCTAGCCACATAAAAA+TGG + chr8_4:19250994-19251013 None:intergenic 30.0%
AAATTTAAATACAAGGCAGG+TGG - chr8_4:19251038-19251057 Msa1317710:three_prime_UTR 30.0%
! TGTTCTCTTGTTTAGTTTCA+TGG - chr8_4:19251103-19251122 Msa1317710:three_prime_UTR 30.0%
! TGCATTGAATTTGAAACCTA+TGG + chr8_4:19251223-19251242 None:intergenic 30.0%
AGGTTTCAAATTCAATGCAA+TGG - chr8_4:19251224-19251243 Msa1317710:CDS 30.0%
! GTTGTTGTGATTCTTGATTT+TGG + chr8_4:19251256-19251275 None:intergenic 30.0%
ATGTATTTCTTAAGGTTGCA+TGG - chr8_4:19251282-19251301 Msa1317710:intron 30.0%
CTGTGACAAAATAAGATCTT+TGG + chr8_4:19251439-19251458 None:intergenic 30.0%
!!! CAAAGATCTTATTTTGTCAC+AGG - chr8_4:19251437-19251456 Msa1317710:intron 30.0%
!!! TGCTTTTTCTTGTCTTATGT+TGG - chr8_4:19251470-19251489 Msa1317710:intron 30.0%
!! TCATTTGGATGATTGATTTG+TGG - chr8_4:19251599-19251618 Msa1317710:intron 30.0%
!! GATGATTGATTTGTGGAAAA+AGG - chr8_4:19251606-19251625 Msa1317710:intron 30.0%
TATGACTATTCAGAGTTGTT+AGG - chr8_4:19251629-19251648 Msa1317710:intron 30.0%
!! GTATCTTTTACTTTTGAACC+AGG - chr8_4:19252361-19252380 Msa1317710:intron 30.0%
!!! CTCAATAATGTTTTAGGGAT+TGG - chr8_4:19252422-19252441 Msa1317710:intron 30.0%
! AAAAGGAACTGCACTAATTT+TGG - chr8_4:19252722-19252741 Msa1317710:intron 30.0%
CAACTATGAATCTTATGAAG+TGG - chr8_4:19252762-19252781 Msa1317710:intron 30.0%
!!! TAGGTTTTAAGTTGTAGTTG+CGG - chr8_4:19252854-19252873 Msa1317710:intron 30.0%
GTGTAATATCAAGAGTTACA+AGG + chr8_4:19252895-19252914 None:intergenic 30.0%
TTTAGCAACTCTATTCCTTT+AGG + chr8_4:19253010-19253029 None:intergenic 30.0%
TGAGATTTACCAGAAAGAAT+AGG + chr8_4:19253204-19253223 None:intergenic 30.0%
ACGAAAAATAAATCCAAGAG+AGG + chr8_4:19253329-19253348 None:intergenic 30.0%
! CGGGTTTTTAATAGAATATG+TGG - chr8_4:19253387-19253406 Msa1317710:intron 30.0%
TATTTAGCAGCAACAAAAAG+CGG - chr8_4:19253425-19253444 Msa1317710:intron 30.0%
CTTTGTTCAAGCAAATTCTA+AGG - chr8_4:19253670-19253689 Msa1317710:CDS 30.0%
GCTTAAAAGATTATGTGACT+AGG - chr8_4:19253709-19253728 Msa1317710:CDS 30.0%
TAAAAGATTATGTGACTAGG+TGG - chr8_4:19253712-19253731 Msa1317710:CDS 30.0%
ATTATACACATGTAAGTCTG+TGG - chr8_4:19253792-19253811 Msa1317710:CDS 30.0%
CTGGTAAACCATATATATAC+AGG + chr8_4:19253877-19253896 None:intergenic 30.0%
ATTCACAGACCTAATTAATC+TGG + chr8_4:19253896-19253915 None:intergenic 30.0%
ATTAATTAGGTCTGTGAATG+TGG - chr8_4:19253897-19253916 Msa1317710:exon 30.0%
TTCTATGGTGAACTCTATCA+AGG + chr8_4:19250857-19250876 None:intergenic 35.0%
!! TTGTGGTGATGATGTTGTTT+TGG + chr8_4:19251188-19251207 None:intergenic 35.0%
! AGACAAGAAAAAGCATGTGA+TGG + chr8_4:19251465-19251484 None:intergenic 35.0%
!!! TTTCCTTTGTTTTCTGCGTT+TGG - chr8_4:19251507-19251526 Msa1317710:intron 35.0%
AATCCAAACGCAGAAAACAA+AGG + chr8_4:19251513-19251532 None:intergenic 35.0%
ACTCGTAGTTACTGATAAGT+GGG - chr8_4:19251659-19251678 Msa1317710:intron 35.0%
! AACGTTTGTTGGGTTATGAT+TGG - chr8_4:19251699-19251718 Msa1317710:CDS 35.0%
! ACGTTTGTTGGGTTATGATT+GGG - chr8_4:19251700-19251719 Msa1317710:CDS 35.0%
GCAACAACAACAGAAAACAA+AGG + chr8_4:19251943-19251962 None:intergenic 35.0%
TCAGGAGCAATGTTGTAATA+TGG - chr8_4:19252181-19252200 Msa1317710:CDS 35.0%
CACATTGAATGCATATGAAG+AGG - chr8_4:19252649-19252668 Msa1317710:intron 35.0%
TGAAGAGGATTGTGAATTTG+CGG - chr8_4:19252664-19252683 Msa1317710:intron 35.0%
AAGGACTTCAACGTTTCAAA+AGG - chr8_4:19252705-19252724 Msa1317710:intron 35.0%
! CACTAATTTTGGATCACTTC+TGG - chr8_4:19252733-19252752 Msa1317710:intron 35.0%
! TATGAAGTGGGAAGATTTTG+AGG - chr8_4:19252775-19252794 Msa1317710:intron 35.0%
!! AAGCAGTAGAAAAGTGTTCA+AGG + chr8_4:19252810-19252829 None:intergenic 35.0%
TTACACGCAACTGATGATAA+AGG - chr8_4:19252909-19252928 Msa1317710:intron 35.0%
GATGATAAAGGTTTCTGATG+CGG - chr8_4:19252921-19252940 Msa1317710:intron 35.0%
! CTCTATTCCTTTAGGTTACA+CGG + chr8_4:19253002-19253021 None:intergenic 35.0%
TGCTGCAGCATATATTAACA+TGG + chr8_4:19253481-19253500 None:intergenic 35.0%
TTAATATATGCTGCAGCAAC+TGG - chr8_4:19253483-19253502 Msa1317710:CDS 35.0%
TAATATATGCTGCAGCAACT+GGG - chr8_4:19253484-19253503 Msa1317710:CDS 35.0%
! CAAAATCAGGAAAAGTATGC+AGG - chr8_4:19253529-19253548 Msa1317710:CDS 35.0%
CTAAATTCCTGAAAACGTTC+AGG - chr8_4:19253616-19253635 Msa1317710:CDS 35.0%
!! TGCTTGAACAAAGCCATTTT+TGG + chr8_4:19253663-19253682 None:intergenic 35.0%
TTTAAGCTAAATCCCTTGCT+AGG + chr8_4:19253696-19253715 None:intergenic 35.0%
TTGAAGTTGTCCAAGTGAAT+AGG - chr8_4:19253735-19253754 Msa1317710:CDS 35.0%
! AGAACAAAGAAGTGTGGTGA+TGG + chr8_4:19251160-19251179 None:intergenic 40.0%
GTGCAAAGAACAAAGAAGTG+TGG + chr8_4:19251166-19251185 None:intergenic 40.0%
!! TGGTATAGTTCTGAGCTTCT+AGG - chr8_4:19251302-19251321 Msa1317710:intron 40.0%
CTTCTTCAACAGATGGAGAA+CGG + chr8_4:19251346-19251365 None:intergenic 40.0%
GAAGCTTCTTCTTCAACAGA+TGG + chr8_4:19251353-19251372 None:intergenic 40.0%
ATGGTTTGAAGAAGTCTCTG+TGG + chr8_4:19251377-19251396 None:intergenic 40.0%
! TACAACAGAAGCACGATCAA+TGG + chr8_4:19251396-19251415 None:intergenic 40.0%
GACTCGTAGTTACTGATAAG+TGG - chr8_4:19251658-19251677 Msa1317710:intron 40.0%
! CGTTTGTTGGGTTATGATTG+GGG - chr8_4:19251701-19251720 Msa1317710:CDS 40.0%
! GTTTGTTGGGTTATGATTGG+GGG - chr8_4:19251702-19251721 Msa1317710:CDS 40.0%
TTTGTTGGGTTATGATTGGG+GGG - chr8_4:19251703-19251722 Msa1317710:CDS 40.0%
GTTAGAATAGAACAGCAACC+TGG + chr8_4:19252382-19252401 None:intergenic 40.0%
GCAATGCTGAGAACAAATAG+AGG - chr8_4:19252444-19252463 Msa1317710:intron 40.0%
TCATACATTTGCTCCATGAC+AGG - chr8_4:19253125-19253144 Msa1317710:intron 40.0%
TTTGCTCCATGACAGGATAA+AGG - chr8_4:19253132-19253151 Msa1317710:intron 40.0%
CCAATTCCTTTATCCTGTCA+TGG + chr8_4:19253141-19253160 None:intergenic 40.0%
CCATGACAGGATAAAGGAAT+TGG - chr8_4:19253138-19253157 Msa1317710:intron 40.0%
AGGATAAAGGAATTGGTCAC+TGG - chr8_4:19253145-19253164 Msa1317710:intron 40.0%
AAGAATAGGTCTCCAAGGAA+AGG + chr8_4:19253190-19253209 None:intergenic 40.0%
CATTTGACTGAAACCTCTCT+TGG - chr8_4:19253313-19253332 Msa1317710:intron 40.0%
GCAGGTGAGAAAAATGTTCA+TGG - chr8_4:19253547-19253566 Msa1317710:CDS 40.0%
GCATTGGAATGTGCCAAAAA+TGG - chr8_4:19253647-19253666 Msa1317710:CDS 40.0%
!! CAAATTCTAAGGCCTAGCAA+GGG - chr8_4:19253681-19253700 Msa1317710:CDS 40.0%
CACATGTAAGTCTGTGGTAT+TGG - chr8_4:19253798-19253817 Msa1317710:CDS 40.0%
GTAGGAGCTTATGATGTACT+AGG - chr8_4:19253846-19253865 Msa1317710:CDS 40.0%
!! GTGGTGATGGTTGTGACTAA+TGG + chr8_4:19251147-19251166 None:intergenic 45.0%
GTAGTTACTGATAAGTGGGC+AGG - chr8_4:19251663-19251682 Msa1317710:intron 45.0%
TTACTGATAAGTGGGCAGGT+CGG - chr8_4:19251667-19251686 Msa1317710:intron 45.0%
! TGTGGAATGGTTTGTGGAGA+TGG - chr8_4:19251877-19251896 Msa1317710:intron 45.0%
! AATGGTTTGTGGAGATGGCT+TGG - chr8_4:19251882-19251901 Msa1317710:intron 45.0%
!!! TGGAGATGGCTTGGTTTTTC+AGG - chr8_4:19251891-19251910 Msa1317710:intron 45.0%
!!! TGGCTTGGTTTTTCAGGTTG+TGG - chr8_4:19251897-19251916 Msa1317710:intron 45.0%
!!! GGCTTGGTTTTTCAGGTTGT+GGG - chr8_4:19251898-19251917 Msa1317710:intron 45.0%
!!! GCTTGGTTTTTCAGGTTGTG+GGG - chr8_4:19251899-19251918 Msa1317710:intron 45.0%
!!! CTTGGTTTTTCAGGTTGTGG+GGG - chr8_4:19251900-19251919 Msa1317710:intron 45.0%
GAGCACAACAAAAAACTCGC+GGG + chr8_4:19251965-19251984 None:intergenic 45.0%
GGAGCACAACAAAAAACTCG+CGG + chr8_4:19251966-19251985 None:intergenic 45.0%
AACACTTTGCTCCAACAGTG+TGG - chr8_4:19252157-19252176 Msa1317710:CDS 45.0%
ATCTATTCCTCCCAACTCTC+AGG - chr8_4:19252620-19252639 Msa1317710:intron 45.0%
TGTGAGATCTCCTGAGAGTT+GGG + chr8_4:19252633-19252652 None:intergenic 45.0%
ATGTGAGATCTCCTGAGAGT+TGG + chr8_4:19252634-19252653 None:intergenic 45.0%
TTGTGAATTTGCGGATCCAG+CGG - chr8_4:19252673-19252692 Msa1317710:intron 45.0%
! GATCCAGCGGGATCTTTTAA+AGG - chr8_4:19252686-19252705 Msa1317710:intron 45.0%
! AGTCCTTTAAAAGATCCCGC+TGG + chr8_4:19252692-19252711 None:intergenic 45.0%
CTAAGCAGTTAAGGCTGCTT+AGG + chr8_4:19252979-19252998 None:intergenic 45.0%
GTTACACGGCTAAGCAGTTA+AGG + chr8_4:19252988-19253007 None:intergenic 45.0%
TGCTTAGCCGTGTAACCTAA+AGG - chr8_4:19252992-19253011 Msa1317710:intron 45.0%
GCTGTATCTTGTCCTTTCCT+TGG - chr8_4:19253175-19253194 Msa1317710:intron 45.0%
CCAGAAAGAATAGGTCTCCA+AGG + chr8_4:19253195-19253214 None:intergenic 45.0%
CCTTGGAGACCTATTCTTTC+TGG - chr8_4:19253192-19253211 Msa1317710:intron 45.0%
!! GCAAATTCTAAGGCCTAGCA+AGG - chr8_4:19253680-19253699 Msa1317710:CDS 45.0%
GCCAGGCTCAAACGTTTGTT+GGG - chr8_4:19251689-19251708 Msa1317710:CDS 50.0%
ACCCAACAAACGTTTGAGCC+TGG + chr8_4:19251693-19251712 None:intergenic 50.0%
TCGGTGTAAATACACCCGTG+AGG - chr8_4:19251853-19251872 Msa1317710:intron 50.0%
CGGTGTAAATACACCCGTGA+GGG - chr8_4:19251854-19251873 Msa1317710:intron 50.0%
TAAATACACCCGTGAGGGTG+TGG - chr8_4:19251859-19251878 Msa1317710:intron 50.0%
AAACCATTCCACACCCTCAC+GGG + chr8_4:19251870-19251889 None:intergenic 50.0%
CAAACCATTCCACACCCTCA+CGG + chr8_4:19251871-19251890 None:intergenic 50.0%
! TGAGGGTGTGGAATGGTTTG+TGG - chr8_4:19251871-19251890 Msa1317710:intron 50.0%
ATTCACGACGAGTGTGTGCA+AGG + chr8_4:19251987-19252006 None:intergenic 50.0%
TTGCTCCAACAGTGTGGTTC+AGG - chr8_4:19252163-19252182 Msa1317710:CDS 50.0%
TTGCTCCTGAACCACACTGT+TGG + chr8_4:19252171-19252190 None:intergenic 50.0%
TGTGAATTTGCGGATCCAGC+GGG - chr8_4:19252674-19252693 Msa1317710:intron 50.0%
! CCACATGCCTGAACGTTTTC+AGG + chr8_4:19253626-19253645 None:intergenic 50.0%
CCTGAAAACGTTCAGGCATG+TGG - chr8_4:19253623-19253642 Msa1317710:CDS 50.0%
GGCCAGGCTCAAACGTTTGT+TGG - chr8_4:19251688-19251707 Msa1317710:CDS 55.0%
GGTTATGATTGGGGGGTTGC+TGG - chr8_4:19251710-19251729 Msa1317710:CDS 55.0%
TATGATTGGGGGGTTGCTGG+AGG - chr8_4:19251713-19251732 Msa1317710:CDS 55.0%
!! TTTCAGGTTGTGGGGGTTGC+TGG - chr8_4:19251907-19251926 Msa1317710:intron 55.0%
ACTGCATCCCGCTTTGCAGT+CGG - chr8_4:19252274-19252293 Msa1317710:intron 55.0%
TACGTCTCCGACTGCAAAGC+GGG + chr8_4:19252284-19252303 None:intergenic 55.0%
CTACGTCTCCGACTGCAAAG+CGG + chr8_4:19252285-19252304 None:intergenic 55.0%
GAGATCTCCTGAGAGTTGGG+AGG + chr8_4:19252630-19252649 None:intergenic 55.0%
CGTTCAGGCATGTGGAGCAT+TGG - chr8_4:19253631-19253650 Msa1317710:CDS 55.0%
! ACACCCGTGAGGGTGTGGAA+TGG - chr8_4:19251864-19251883 Msa1317710:intron 60.0%
CGCTTTGCAGTCGGAGACGT+AGG - chr8_4:19252283-19252302 Msa1317710:intron 60.0%
GATAAGTGGGCAGGTCGGCC+AGG - chr8_4:19251672-19251691 Msa1317710:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 19250852 19254046 19250852 ID=Msa1317710;Name=Msa1317710
chr8_4 mRNA 19250852 19254046 19250852 ID=Msa1317710-mRNA-1;Parent=Msa1317710;Name=Msa1317710-mRNA-1;_AED=0.20;_eAED=0.20;_QI=147|1|1|1|1|1|5|294|282
chr8_4 exon 19250852 19251260 19250852 ID=Msa1317710-mRNA-1:exon:7104;Parent=Msa1317710-mRNA-1
chr8_4 exon 19251348 19251399 19251348 ID=Msa1317710-mRNA-1:exon:7103;Parent=Msa1317710-mRNA-1
chr8_4 exon 19251685 19251751 19251685 ID=Msa1317710-mRNA-1:exon:7102;Parent=Msa1317710-mRNA-1
chr8_4 exon 19252102 19252256 19252102 ID=Msa1317710-mRNA-1:exon:7101;Parent=Msa1317710-mRNA-1
chr8_4 exon 19253440 19254046 19253440 ID=Msa1317710-mRNA-1:exon:7100;Parent=Msa1317710-mRNA-1
chr8_4 five_prime_UTR 19253900 19254046 19253900 ID=Msa1317710-mRNA-1:five_prime_utr;Parent=Msa1317710-mRNA-1
chr8_4 CDS 19253440 19253899 19253440 ID=Msa1317710-mRNA-1:cds;Parent=Msa1317710-mRNA-1
chr8_4 CDS 19252102 19252256 19252102 ID=Msa1317710-mRNA-1:cds;Parent=Msa1317710-mRNA-1
chr8_4 CDS 19251685 19251751 19251685 ID=Msa1317710-mRNA-1:cds;Parent=Msa1317710-mRNA-1
chr8_4 CDS 19251348 19251399 19251348 ID=Msa1317710-mRNA-1:cds;Parent=Msa1317710-mRNA-1
chr8_4 CDS 19251146 19251260 19251146 ID=Msa1317710-mRNA-1:cds;Parent=Msa1317710-mRNA-1
chr8_4 three_prime_UTR 19250852 19251145 19250852 ID=Msa1317710-mRNA-1:three_prime_utr;Parent=Msa1317710-mRNA-1
Gene Sequence

>Msa1317710

ATGTGGCTAGCATTAATTAGAAACTTAGATATTTATGTAAAATTTAAATACAAGGCAGGTGGCAACCGTTTGTTCTTAGATTCTAACAAAATCATTCTAACGTTTGTTCTCTTGTTTAGTTTCATGGCATTGTCTGCTATATCTTCCATTAGTCACAACCATCACCACACTTCTTTGTTCTTTGCACCAAAACAACATCATCACCACAATAACACAAAAATCCATAGGTTTCAAATTCAATGCAATGGAACAAACCAAAATCAAGAATCACAACAACAGAACAATGTATTTCTTAAGGTTGCATGGTATAGTTCTGAGCTTCTAGGCATTGCTGCTTCTGCTTTCCGTTCTCCATCTGTTGAAGAAGAAGCTTCTCCACAGAGACTTCTTCAAACCATTGATCGTGCTTCTGTTGTAGACACAATCAAACAAGACTTCCAAAGATCTTATTTTGTCACAGGAGATCTCACATTGAATGCATATGAAGAGGATTGTGAATTTGCGGATCCAGCGGGATCTTTTAAAGGACTTCAACGTTTCAAAAGGAACTGCACTAATTTTGGATCACTTCTGGAGAAGTCAACTATGAATCTTATGAAGTGGGAAGATTTTGAGGATAAAGGAATTGGTCACTGGCGATTCAGCTGTATCTTGTCCTTTCCTTGGAGACCTATTCTTTCTGCAACTGGGTACACAGAATACTATTTTGATACAAAATCAGGAAAAGTATGCAGGCATGTGGAGCATTGGAATGTGCCAAAAATGGCTTTGTTCAAGCAAATTCTAAGGCCTAGCAAGGGATTTAGCTTAAAAGATTATGTGACTAGGTGGTTGAAGTTGTCCAAGTGA

Protein sequence

>Msa1317710

MWLALIRNLDIYVKFKYKAGGNRLFLDSNKIILTFVLLFSFMALSAISSISHNHHHTSLFFAPKQHHHHNNTKIHRFQIQCNGTNQNQESQQQNNVFLKVAWYSSELLGIAASAFRSPSVEEEASPQRLLQTIDRASVVDTIKQDFQRSYFVTGDLTLNAYEEDCEFADPAGSFKGLQRFKRNCTNFGSLLEKSTMNLMKWEDFEDKGIGHWRFSCILSFPWRPILSATGYTEYYFDTKSGKVCRHVEHWNVPKMALFKQILRPSKGFSLKDYVTRWLKLSK*