AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0389050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0389050 MtrunA17_Chr8g0338501 92.208 462 36 0 20 481 49 510 0.0 880
Msa0389050 MtrunA17_Chr8g0338471 82.366 465 78 1 17 481 17 477 0.0 794
Msa0389050 MtrunA17_Chr8g0338511 76.056 426 97 2 23 444 28 452 0.0 672
Msa0389050 MtrunA17_Chr8g0338521 71.588 359 88 5 39 391 9 359 2.08e-172 492
Msa0389050 MtrunA17_Chr8g0338531 62.233 421 115 7 88 481 8 411 1.30e-158 470
Msa0389050 MtrunA17_Chr8g0338481 68.826 247 52 1 190 436 1 222 1.24e-119 353
Msa0389050 MtrunA17_Chr2g0311551 41.649 461 249 7 28 483 259 704 5.07e-115 365
Msa0389050 MtrunA17_Chr2g0311541 41.469 463 249 9 28 482 18 466 3.12e-114 357
Msa0389050 MtrunA17_Chr2g0311521 41.866 461 251 9 29 483 261 710 6.40e-112 357
Msa0389050 MtrunA17_Chr5g0399591 39.913 461 237 17 39 479 34 474 6.84e-101 322
Msa0389050 MtrunA17_Chr5g0399561 38.362 464 254 14 36 479 32 483 1.92e-95 308
Msa0389050 MtrunA17_Chr2g0311511 39.943 353 193 9 4 339 7 357 2.40e-75 253
Msa0389050 MtrunA17_Chr5g0394381 32.215 447 255 21 1 433 1 413 1.35e-45 171
Msa0389050 MtrunA17_Chr4g0063701 31.221 426 240 20 42 442 51 448 1.52e-42 162
Msa0389050 MtrunA17_Chr4g0063691 30.443 519 299 23 1 479 1 497 3.57e-39 152
Msa0389050 MtrunA17_Chr3g0106201 26.947 475 292 17 34 486 24 465 8.67e-31 127
Msa0389050 MtrunA17_Chr3g0106121 26.316 475 300 14 34 486 24 470 3.01e-28 119
Msa0389050 MtrunA17_Chr3g0106141 25.840 476 312 13 34 493 24 474 3.17e-28 119
Msa0389050 MtrunA17_Chr0c04g0492001 25.783 415 265 16 27 422 24 414 1.31e-27 117
Msa0389050 MtrunA17_Chr1g0202331 26.695 472 276 24 3 430 2 447 1.86e-27 117
Msa0389050 MtrunA17_Chr3g0134291 25.783 415 265 16 27 422 24 414 4.37e-27 116
Msa0389050 MtrunA17_Chr0c04g0492031 25.783 415 265 16 27 422 24 414 5.87e-27 115
Msa0389050 MtrunA17_Chr3g0106131 27.273 418 252 13 34 429 24 411 2.77e-26 113
Msa0389050 MtrunA17_Chr3g0106151 26.139 417 260 12 34 434 27 411 2.58e-24 107
Msa0389050 MtrunA17_Chr7g0237351 25.607 453 282 18 4 433 2 422 1.67e-23 105
Msa0389050 MtrunA17_Chr3g0106211 26.790 377 234 13 34 393 27 378 1.77e-23 105
Msa0389050 MtrunA17_Chr3g0106221 24.878 410 260 13 3 394 6 385 1.57e-22 102
Msa0389050 MtrunA17_Chr7g0237341 27.208 419 237 21 45 434 43 422 1.60e-20 95.9
Msa0389050 MtrunA17_Chr7g0257821 25.641 429 266 19 5 421 11 398 1.54e-19 92.4
Msa0389050 MtrunA17_Chr2g0323301 23.877 423 259 17 5 395 1 392 6.57e-19 90.9
Msa0389050 MtrunA17_Chr4g0053161 25.943 424 261 20 32 433 49 441 1.10e-18 90.1
Msa0389050 MtrunA17_Chr4g0042401 24.694 409 261 15 6 393 3 385 1.15e-18 90.1
Msa0389050 MtrunA17_Chr7g0237331 25.296 423 265 16 32 434 32 423 1.18e-18 89.7
Msa0389050 MtrunA17_Chr8g0361311 25.293 427 242 18 1 394 1 383 4.25e-18 87.0
Msa0389050 MtrunA17_Chr3g0084621 23.989 371 235 16 45 395 44 387 1.44e-17 86.3
Msa0389050 MtrunA17_Chr8g0361251 25.059 427 243 18 1 394 1 383 3.86e-17 85.1
Msa0389050 MtrunA17_Chr7g0237391 24.144 526 315 25 45 535 42 518 6.02e-17 84.3
Msa0389050 MtrunA17_Chr8g0361441 25.659 417 248 19 1 395 12 388 1.04e-16 83.6
Msa0389050 MtrunA17_Chr3g0093161 24.934 377 249 15 33 395 25 381 1.42e-16 83.2
Msa0389050 MtrunA17_Chr3g0134321 33.140 172 104 6 27 190 21 189 1.60e-16 82.8
Msa0389050 MtrunA17_Chr2g0280701 24.468 376 229 13 45 395 38 383 1.96e-16 82.8
Msa0389050 MtrunA17_Chr2g0318811 25.122 410 253 17 4 395 6 379 3.58e-16 82.0
Msa0389050 MtrunA17_Chr4g0042441 23.529 408 265 13 7 393 3 384 4.28e-16 81.6
Msa0389050 MtrunA17_Chr3g0078531 25.899 417 256 18 6 393 15 407 5.00e-16 81.6
Msa0389050 MtrunA17_Chr4g0042391 24.505 404 260 16 6 393 3 377 6.15e-16 81.3
Msa0389050 MtrunA17_Chr8g0361431 25.490 408 238 18 4 395 15 372 1.30e-15 80.1
Msa0389050 MtrunA17_Chr5g0422921 24.331 411 251 16 11 394 4 381 1.42e-15 80.1
Msa0389050 MtrunA17_Chr2g0280681 25.195 385 219 15 39 393 38 383 1.89e-15 79.7
Msa0389050 MtrunA17_Chr2g0318841 24.103 390 239 17 28 395 25 379 2.69e-15 79.3
Msa0389050 MtrunA17_Chr3g0098791 23.460 422 249 18 5 395 8 386 8.19e-15 77.4
Msa0389050 MtrunA17_Chr4g0042421 23.571 420 251 15 7 393 3 385 1.01e-14 77.4
Msa0389050 MtrunA17_Chr3g0084681 23.670 376 230 15 45 395 44 387 1.23e-14 77.0
Msa0389050 MtrunA17_Chr4g0023071 25.118 422 252 18 11 398 6 397 1.24e-14 77.0
Msa0389050 MtrunA17_Chr4g0042361 25.316 395 240 18 27 395 60 425 1.89e-14 76.6
Msa0389050 MtrunA17_Chr4g0048721 24.550 444 243 18 6 403 11 408 2.14e-14 75.9
Msa0389050 MtrunA17_Chr2g0280751 23.620 453 271 19 45 465 50 459 3.32e-14 75.9
Msa0389050 MtrunA17_Chr4g0042341 25.355 422 252 18 6 395 3 393 4.73e-14 75.5
Msa0389050 MtrunA17_Chr8g0361301 26.087 414 245 19 5 395 9 384 4.83e-14 75.1
Msa0389050 MtrunA17_Chr2g0280711 22.917 384 226 15 45 394 42 389 5.88e-14 75.1
Msa0389050 MtrunA17_Chr3g0078521 25.654 382 225 16 45 393 40 395 5.97e-14 75.1
Msa0389050 MtrunA17_Chr3g0084431 22.084 403 264 14 14 395 8 381 8.24e-14 74.7
Msa0389050 MtrunA17_Chr3g0084651 22.074 376 235 14 45 393 41 385 1.36e-13 73.2
Msa0389050 MtrunA17_Chr2g0333091 28.312 385 201 21 40 399 46 380 1.63e-13 73.6
Msa0389050 MtrunA17_Chr7g0234561 24.048 420 249 18 91 485 34 408 1.78e-13 73.6
Msa0389050 MtrunA17_Chr8g0348661 24.054 370 230 13 45 393 27 366 2.68e-13 72.8
Msa0389050 MtrunA17_Chr2g0280731 26.377 345 212 14 10 336 14 334 2.80e-13 72.8
Msa0389050 MtrunA17_Chr8g0361261 24.209 537 329 23 5 512 40 527 3.05e-13 72.8
Msa0389050 MtrunA17_Chr7g0236121 22.340 470 277 19 45 477 44 462 6.12e-13 71.6
Msa0389050 MtrunA17_Chr2g0323241 24.944 445 244 23 7 410 9 404 6.21e-13 70.9
Msa0389050 MtrunA17_Chr3g0106161 27.966 236 144 8 256 486 90 304 7.23e-13 71.2
Msa0389050 MtrunA17_Chr7g0236201 23.023 430 255 18 45 437 44 434 9.57e-13 71.2
Msa0389050 MtrunA17_Chr7g0236161 23.023 430 255 18 45 437 44 434 1.06e-12 70.9
Msa0389050 MtrunA17_Chr3g0084491 23.035 369 240 14 45 395 57 399 1.70e-12 70.5
Msa0389050 MtrunA17_Chr2g0280801 23.797 395 233 21 46 404 45 407 2.42e-12 69.7
Msa0389050 MtrunA17_Chr1g0149381 35.971 139 80 5 41 174 54 188 3.29e-12 69.3
Msa0389050 MtrunA17_Chr4g0048791 25.065 383 224 16 45 395 55 406 5.80e-12 68.6
Msa0389050 MtrunA17_Chr2g0318831 24.444 495 307 24 4 479 9 455 6.97e-12 68.6
Msa0389050 MtrunA17_Chr3g0078551 24.582 419 257 19 7 393 5 396 1.20e-11 67.8
Msa0389050 MtrunA17_Chr4g0048631 23.077 520 304 24 9 488 7 470 1.24e-11 67.8
Msa0389050 MtrunA17_Chr2g0280841 23.605 466 276 23 5 428 10 437 1.42e-11 66.6
Msa0389050 MtrunA17_Chr4g0048641 25.000 344 189 16 45 349 63 376 6.12e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0389050 AT5G24080.2 30.065 459 263 22 6 430 13 447 2.21e-36 145
Msa0389050 AT4G21390.1 25.458 491 305 20 3 471 7 458 7.92e-22 100
Msa0389050 AT4G21390.2 25.458 491 305 20 3 471 7 458 9.94e-22 99.8
Msa0389050 AT4G21380.2 25.570 395 238 17 25 395 28 390 3.57e-19 91.7
Msa0389050 AT4G21380.1 25.570 395 238 17 25 395 28 390 5.40e-19 91.3
Msa0389050 AT1G65790.3 25.897 390 235 17 27 395 28 384 5.89e-18 87.8
Msa0389050 AT1G65790.2 25.897 390 235 17 27 395 28 384 5.89e-18 87.8
Msa0389050 AT1G65790.1 25.897 390 235 17 27 395 28 384 8.66e-18 87.8
Msa0389050 AT2G41890.1 26.450 431 258 21 11 421 14 405 1.35e-17 87.0
Msa0389050 AT1G65800.2 25.648 386 233 17 33 395 34 388 3.73e-16 82.0
Msa0389050 AT1G65800.1 25.648 386 233 17 33 395 34 388 5.15e-16 82.0
Msa0389050 AT1G61610.1 24.385 488 308 17 1 466 10 458 1.27e-15 80.9
Msa0389050 AT1G61610.2 24.385 488 308 17 1 466 10 458 1.28e-15 80.5
Msa0389050 AT1G11303.1 23.789 475 282 24 35 481 32 454 1.36e-14 77.4
Msa0389050 AT1G11300.2 22.045 440 269 17 35 439 32 432 1.55e-14 77.4
Msa0389050 AT1G11300.1 21.784 482 283 20 35 481 32 454 2.07e-14 77.0
Msa0389050 AT1G11330.3 23.029 482 299 17 45 503 47 479 4.51e-14 75.9
Msa0389050 AT1G11330.2 23.029 482 299 17 45 503 47 479 7.02e-14 75.1
Msa0389050 AT1G11330.1 24.804 383 246 14 45 404 47 410 8.34e-14 75.1
Msa0389050 AT1G61420.1 23.841 453 264 20 45 463 38 443 9.38e-14 74.7
Msa0389050 AT1G61420.2 23.841 453 264 20 45 463 38 443 9.98e-14 74.7
Msa0389050 AT1G61420.4 23.841 453 264 20 45 463 38 443 9.98e-14 74.7
Msa0389050 AT1G61550.1 23.810 420 265 20 10 409 7 391 3.53e-13 72.8
Msa0389050 AT4G03230.8 23.282 451 287 22 9 431 7 426 3.10e-12 70.1
Msa0389050 AT1G34300.1 25.815 399 233 21 27 408 25 377 3.51e-12 69.7
Msa0389050 AT4G03230.4 23.230 452 286 21 9 431 7 426 4.70e-12 69.3
Msa0389050 AT4G03230.1 23.230 452 286 21 9 431 7 426 4.70e-12 69.3
Msa0389050 AT2G19130.1 24.318 440 263 22 1 409 1 401 5.14e-12 69.3

Find 110 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACATTGTTCTTCGGTAAA+AGG 0.186668 3_1:-93662687 None:intergenic
ACCTATTCTAACTTTCAAAA+AGG 0.209877 3_1:-93662832 None:intergenic
CTTGGTTGGTTATGTGCTTT+TGG 0.214716 3_1:+93662932 Msa0389050:CDS
ACAATGGTTGAATTTGAATT+TGG 0.225138 3_1:-93662879 None:intergenic
ACATGGTTGCTTTCACCTTC+TGG 0.233098 3_1:+93661685 Msa0389050:CDS
TCACTCTCCGTTGAATTCTT+TGG 0.236658 3_1:-93662369 None:intergenic
CTACACTGCTCTTCAGTAAA+AGG 0.260924 3_1:+93665178 Msa0389050:CDS
AAATATGATCCAACTCTTAA+TGG 0.281448 3_1:+93662801 Msa0389050:CDS
CCTTCTGGTGACTTTGCCTT+TGG 0.284286 3_1:+93661700 Msa0389050:CDS
CTCCAAATGGTGTCGGGTTA+TGG 0.303311 3_1:+93661878 Msa0389050:CDS
TATAATAGCTTCTGTACTTT+GGG 0.339340 3_1:+93662468 Msa0389050:CDS
ATATGATCACATATATTATC+AGG 0.355587 3_1:-93662417 None:intergenic
AGACTTTGACTGACATTGAT+TGG 0.356501 3_1:+93662637 Msa0389050:CDS
TCAACCAGAGAGTATCGTTT+TGG 0.357800 3_1:-93662519 None:intergenic
ATATGTGATCATATTGCTAA+TGG 0.364021 3_1:+93662426 Msa0389050:CDS
TCACATCCTTCTATGAAGTC+TGG 0.368887 3_1:-93662570 None:intergenic
TTCCATAACCCGACACCATT+TGG 0.372228 3_1:-93661880 None:intergenic
ATCAGGGTACTTGTATGTAT+TGG 0.374307 3_1:+93662233 Msa0389050:CDS
CCTTCTCAGGTACTTCAAAA+AGG 0.375462 3_1:+93662018 Msa0389050:CDS
TGACAGGTATGGTGGAACTA+TGG 0.376095 3_1:+93665002 Msa0389050:intron
AAGAAGTTACCACTTTCAAA+TGG 0.384175 3_1:-93665088 None:intergenic
CATTCTATTAATTTACCATC+TGG 0.385953 3_1:+93662129 Msa0389050:CDS
AAGAAGTTACCGCTCTCAAA+TGG 0.386440 3_1:+93662777 Msa0389050:CDS
TGACACCTTGTTGCCTTCTC+AGG 0.388090 3_1:+93662005 Msa0389050:CDS
TCAGGGTACTTGTATGTATT+GGG 0.395591 3_1:+93662234 Msa0389050:CDS
AAAGCTTTCTCCAAGGCTTA+AGG 0.399611 3_1:+93662044 Msa0389050:CDS
GAAGATGAACTAAGTAAAAC+AGG 0.405112 3_1:+93662594 Msa0389050:CDS
TAACAGAGAAACTTTGGTCT+TGG 0.405785 3_1:+93662914 Msa0389050:CDS
AAGCAACCATGTAGAGTTGT+TGG 0.405956 3_1:-93661674 None:intergenic
AGCTTTCTTACATTGTTCTT+CGG 0.409140 3_1:-93662694 None:intergenic
AGTTCCAGCACCTGAAGTAT+TGG 0.410576 3_1:-93662193 None:intergenic
CGTGGTGTGTTCAACGATAC+AGG 0.420819 3_1:+93661934 Msa0389050:CDS
AGAGTTGATGCAACTCTTAA+TGG 0.425621 3_1:-93665064 None:intergenic
ATATAATAGCTTCTGTACTT+TGG 0.426922 3_1:+93662467 Msa0389050:CDS
ACAATGTAAGAAAGCTTGTA+TGG 0.435495 3_1:+93662701 Msa0389050:CDS
TCAGGTTAGGTGATAGTTGT+TGG 0.437474 3_1:+93662751 Msa0389050:CDS
TCAGGTTAGGTGATAGTTGT+TGG 0.437474 3_1:-93665114 None:intergenic
ACTGTGGGATCCAATACTTC+AGG 0.440454 3_1:+93662183 Msa0389050:CDS
GTGGAACTCAATGCCGATGA+TGG 0.444717 3_1:+93661841 Msa0389050:CDS
TGTGCTCGAGGGTGCTGGTT+GGG 0.444978 3_1:+93661963 Msa0389050:CDS
CAATTGGTCTTTGACAGATC+AGG 0.445065 3_1:+93662216 Msa0389050:CDS
ATGGTTGAATTTGAATTTGG+AGG 0.450638 3_1:-93662876 None:intergenic
GATCAATAACAGAGAAACTT+TGG 0.452660 3_1:+93662908 Msa0389050:CDS
AAATTTGACTCCTTAAGCCT+TGG 0.459704 3_1:-93662054 None:intergenic
TTCAGGTGCTGGAACTCAAT+TGG 0.460471 3_1:+93662200 Msa0389050:CDS
AACTTTGTGCTCGAGGGTGC+TGG 0.461080 3_1:+93661958 Msa0389050:CDS
AATGAAAACTACTATGAAAG+TGG 0.465194 3_1:+93662159 Msa0389050:CDS
ATTCAACGGAGAGTGATGTT+TGG 0.471012 3_1:+93662376 Msa0389050:CDS
TGCAAGCCAGACTTCATAGA+AGG 0.471207 3_1:+93662564 Msa0389050:CDS
CAGCTACCAAGTGGATCATC+GGG 0.492679 3_1:-93662543 None:intergenic
AAAAGGTCAGTGTCTTGGAT+TGG 0.492793 3_1:-93661730 None:intergenic
AGAAGTTACCACTTTCAAAT+GGG 0.494879 3_1:-93665087 None:intergenic
GCCTTAGCACCATTAAGAGT+TGG 0.495002 3_1:-93662810 None:intergenic
AGAGAAACTTTGGTCTTGGT+TGG 0.497119 3_1:+93662918 Msa0389050:CDS
GGATCCAATACTTCAGGTGC+TGG 0.498783 3_1:+93662189 Msa0389050:CDS
GCAGTGTAGGAAATCTTGTA+TGG 0.504417 3_1:-93665164 None:intergenic
AATGGAGGGAGTGGTGTTTG+TGG 0.505355 3_1:+93662444 Msa0389050:CDS
CTAACTTCTCCAAATGGTGT+CGG 0.507596 3_1:+93661871 Msa0389050:CDS
GGATGATTGTTTGTGTTCTG+TGG 0.510059 3_1:-93665143 None:intergenic
AGAGAAAGTCCTGCACCAAA+AGG 0.511034 3_1:+93661811 Msa0389050:CDS
GCAGCTACCAAGTGGATCAT+CGG 0.512201 3_1:-93662544 None:intergenic
AAAAGAATCACCAATGGCTA+TGG 0.512880 3_1:-93661641 None:intergenic
TACTATGAAAGTGGAACTGT+GGG 0.513986 3_1:+93662168 Msa0389050:CDS
TTGGTGCTAACTTCTCCAAA+TGG 0.515119 3_1:+93661865 Msa0389050:CDS
CTGAAACCAACAACTCTACA+TGG 0.519159 3_1:+93661668 Msa0389050:CDS
TAACTTCTCCAAATGGTGTC+GGG 0.522903 3_1:+93661872 Msa0389050:CDS
TGCAACTCTTAATGGTGCTA+AGG 0.523300 3_1:-93665056 None:intergenic
ATCAGGTTTAGACCACACTA+TGG 0.528173 3_1:-93662400 None:intergenic
GTGTCCAAAACGATACTCTC+TGG 0.529549 3_1:+93662515 Msa0389050:CDS
AGAAGTTACCGCTCTCAAAT+GGG 0.536492 3_1:+93662778 Msa0389050:CDS
AGAATAGGTAATACCTCCAT+TGG 0.536694 3_1:+93662846 Msa0389050:CDS
GGTTTGAGCTAGAACACTGA+TGG 0.540115 3_1:-93661611 None:intergenic
TCCAACTCTTAATGGTGCTA+AGG 0.543141 3_1:+93662809 Msa0389050:CDS
GTTATTGATCTTGTTCACAA+TGG 0.550618 3_1:-93662895 None:intergenic
GACAGGTATGGTGGAACTAT+GGG 0.550857 3_1:+93665003 Msa0389050:intron
TGAAGCACAGAATCTGACAT+AGG 0.552286 3_1:-93662660 None:intergenic
AATTGGTCTTTGACAGATCA+GGG 0.556649 3_1:+93662217 Msa0389050:CDS
TCAACTCTCCCATTTGAAAG+TGG 0.563194 3_1:+93665079 Msa0389050:CDS
TGCACCAAAAGGATCAAAAG+TGG 0.563251 3_1:+93661822 Msa0389050:CDS
GAAGGCAACAAGGTGTCACT+AGG 0.563488 3_1:-93662000 None:intergenic
TTGTGCTCGAGGGTGCTGGT+TGG 0.567290 3_1:+93661962 Msa0389050:CDS
ATAGGTAATACCTCCATTGG+TGG 0.571360 3_1:+93662849 Msa0389050:CDS
TACAGGTAACTTTGTGCTCG+AGG 0.573645 3_1:+93661951 Msa0389050:CDS
CTAATTTGTGACAGGTATGG+TGG 0.587677 3_1:+93664994 Msa0389050:intron
TGGAGGAAAGCCACCAATGG+AGG 0.591927 3_1:-93662859 None:intergenic
ATTTGGAGGAAAGCCACCAA+TGG 0.594950 3_1:-93662862 None:intergenic
TGTGATCATATTGCTAATGG+AGG 0.596060 3_1:+93662429 Msa0389050:CDS
AGTTAGCACCAACCCATCAT+CGG 0.597152 3_1:-93661854 None:intergenic
CATATTGCTAATGGAGGGAG+TGG 0.599618 3_1:+93662435 Msa0389050:CDS
CAAGCATCCAAAGAATTCAA+CGG 0.602872 3_1:+93662362 Msa0389050:CDS
CTACTATGAAAGTGGAACTG+TGG 0.604447 3_1:+93662167 Msa0389050:CDS
GTTGATCCCGATGATCCACT+TGG 0.612890 3_1:+93662537 Msa0389050:CDS
ACAGGTAACTTTGTGCTCGA+GGG 0.615211 3_1:+93661952 Msa0389050:CDS
ACTCAATGCCGATGATGGGT+TGG 0.617515 3_1:+93661846 Msa0389050:CDS
GTGATCATATTGCTAATGGA+GGG 0.623490 3_1:+93662430 Msa0389050:CDS
TGGAACTCAATGCCGATGAT+GGG 0.630231 3_1:+93661842 Msa0389050:CDS
TGCCCTAACATAAAATTCAG+TGG 0.633945 3_1:-93662307 None:intergenic
CCAAAGGCAAAGTCACCAGA+AGG 0.636933 3_1:-93661700 None:intergenic
TCATATTTCCCATTTGAGAG+CGG 0.638318 3_1:-93662786 None:intergenic
AAGGTGGAAAGCTTTCTCCA+AGG 0.645582 3_1:+93662037 Msa0389050:CDS
TTGGATTGGAAGAAAACCAA+AGG 0.646218 3_1:-93661716 None:intergenic
CTCAGTGCGAAAGTTTCTCG+TGG 0.646759 3_1:+93661916 Msa0389050:CDS
AGCAGTAAAAGAATCACCAA+TGG 0.648839 3_1:-93661647 None:intergenic
AGGTATGGTGGAACTATGGG+AGG 0.656973 3_1:+93665006 Msa0389050:intron
TCTGGCTTGCAGCTACCAAG+TGG 0.664665 3_1:-93662552 None:intergenic
AAGTACCTGAGAAGGCAACA+AGG 0.669423 3_1:-93662010 None:intergenic
GTGATGTTTGGACCATAGTG+TGG 0.682137 3_1:+93662388 Msa0389050:CDS
TTCCTGACAAAACTGTTGTG+TGG 0.703863 3_1:+93661779 Msa0389050:CDS
CGGGTTATGGAATACTACTG+AGG 0.708648 3_1:+93661891 Msa0389050:CDS
TTGATTGTAGCAATATGTGT+CGG 0.728253 3_1:+93662981 Msa0389050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATCATTTTAAATTGAATTA+GGG - chr3_1:93664348-93664367 None:intergenic 10.0%
!! TATAATATTGTGAAATATAT+AGG + chr3_1:93664448-93664467 Msa0389050:intron 10.0%
!! ATAATATTGTGAAATATATA+GGG + chr3_1:93664449-93664468 Msa0389050:intron 10.0%
!!! ATTCATTTTTTTATTTGTTT+TGG - chr3_1:93664475-93664494 None:intergenic 10.0%
!!! TAATTTTACCCATAAAATTA+TGG + chr3_1:93664321-93664340 Msa0389050:intron 15.0%
!!! CAATCATTTTAAATTGAATT+AGG - chr3_1:93664349-93664368 None:intergenic 15.0%
!! TTACAAATTATTCAATTTAC+AGG + chr3_1:93664740-93664759 Msa0389050:intron 15.0%
!!! ACAGAACATTTTATATTTTA+GGG - chr3_1:93664767-93664786 None:intergenic 15.0%
!! TAAATATTCTCTAAATAAGT+TGG - chr3_1:93664971-93664990 None:intergenic 15.0%
!! ATATGATCACATATATTATC+AGG - chr3_1:93662420-93662439 None:intergenic 20.0%
!! ATATCTCATTTAACATAAGT+AGG + chr3_1:93664409-93664428 Msa0389050:intron 20.0%
!! ATTTAACATAAGTAGGTAAA+AGG + chr3_1:93664416-93664435 Msa0389050:intron 20.0%
!! GAAAACAAACATTATGTAAA+AGG + chr3_1:93664498-93664517 Msa0389050:intron 20.0%
!!! TATAATATCAACCATTGATT+TGG - chr3_1:93664639-93664658 None:intergenic 20.0%
!!! GACAGAACATTTTATATTTT+AGG - chr3_1:93664768-93664787 None:intergenic 20.0%
!!! ATTTAATACTAATTTGTGAC+AGG + chr3_1:93664986-93665005 Msa0389050:intron 20.0%
! ATAAGTGAGAAGAGAAAAAA+GGG - chr3_1:93661583-93661602 None:intergenic 25.0%
! AATAAGTGAGAAGAGAAAAA+AGG - chr3_1:93661584-93661603 None:intergenic 25.0%
!!! AAGGAGTCAAATTTTAGTAA+AGG + chr3_1:93662063-93662082 Msa0389050:CDS 25.0%
!!! AGTCAAATTTTAGTAAAGGA+AGG + chr3_1:93662067-93662086 Msa0389050:CDS 25.0%
! CATTCTATTAATTTACCATC+TGG + chr3_1:93662129-93662148 Msa0389050:CDS 25.0%
! AATGAAAACTACTATGAAAG+TGG + chr3_1:93662159-93662178 Msa0389050:CDS 25.0%
!! TACCACTGAATTTTATGTTA+GGG + chr3_1:93662305-93662324 Msa0389050:CDS 25.0%
! ATATGTGATCATATTGCTAA+TGG + chr3_1:93662426-93662445 Msa0389050:CDS 25.0%
! ATATAATAGCTTCTGTACTT+TGG + chr3_1:93662467-93662486 Msa0389050:CDS 25.0%
! TATAATAGCTTCTGTACTTT+GGG + chr3_1:93662468-93662487 Msa0389050:CDS 25.0%
! AAATATGATCCAACTCTTAA+TGG + chr3_1:93662801-93662820 Msa0389050:CDS 25.0%
! ACCTATTCTAACTTTCAAAA+AGG - chr3_1:93662835-93662854 None:intergenic 25.0%
! ACAATGGTTGAATTTGAATT+TGG - chr3_1:93662882-93662901 None:intergenic 25.0%
!! AAAGTTAAACAGTTTTCTGT+TGG + chr3_1:93663214-93663233 Msa0389050:intron 25.0%
!! AATGCAAGAATTTCTGATTT+TGG + chr3_1:93663542-93663561 Msa0389050:intron 25.0%
! AATTTCATGTAGAAAATGTG+TGG + chr3_1:93663712-93663731 Msa0389050:intron 25.0%
!!! ACAAAGCAATTTTAACTGAT+TGG + chr3_1:93663759-93663778 Msa0389050:intron 25.0%
!!! CAAAGCAATTTTAACTGATT+GGG + chr3_1:93663760-93663779 Msa0389050:intron 25.0%
!! AATTGGTTATGATTGCTATT+TGG + chr3_1:93663867-93663886 Msa0389050:intron 25.0%
!! TATTGGATACTAATTTGTGA+GGG - chr3_1:93663983-93664002 None:intergenic 25.0%
!! ATATTGGATACTAATTTGTG+AGG - chr3_1:93663984-93664003 None:intergenic 25.0%
! CTTGTTAACTTAGAGAATAT+TGG - chr3_1:93664000-93664019 None:intergenic 25.0%
! AATGTTCATTAGTGATATTG+TGG + chr3_1:93664184-93664203 Msa0389050:intron 25.0%
!! ATTAGGGTCCATAATTTTAT+GGG - chr3_1:93664332-93664351 None:intergenic 25.0%
!! AATTAGGGTCCATAATTTTA+TGG - chr3_1:93664333-93664352 None:intergenic 25.0%
!! ATTTAAAATGATTGTCATGC+AGG + chr3_1:93664355-93664374 Msa0389050:intron 25.0%
! TATCCAAAACAAAACAACAA+TGG + chr3_1:93664822-93664841 Msa0389050:intron 25.0%
!!! ATTCCATTGTTGTTTTGTTT+TGG - chr3_1:93664828-93664847 None:intergenic 25.0%
! AACAAAACAACAATGGAATA+AGG + chr3_1:93664829-93664848 Msa0389050:intron 25.0%
! TGACTTTAAACAACAAAACA+AGG + chr3_1:93664923-93664942 Msa0389050:intron 25.0%
!!! ACCTTTTTTTGCTTTCCATT+TGG + chr3_1:93661746-93661765 Msa0389050:CDS 30.0%
ACCAAATGGAAAGCAAAAAA+AGG - chr3_1:93661750-93661769 None:intergenic 30.0%
!! AGGAATTTTAGCATACCAAA+TGG - chr3_1:93661764-93661783 None:intergenic 30.0%
! TTTTCATTAGCATAACCAGA+TGG - chr3_1:93662147-93662166 None:intergenic 30.0%
! CTACCACTGAATTTTATGTT+AGG + chr3_1:93662304-93662323 Msa0389050:CDS 30.0%
GAAGATGAACTAAGTAAAAC+AGG + chr3_1:93662594-93662613 Msa0389050:CDS 30.0%
TTACATTGTTCTTCGGTAAA+AGG - chr3_1:93662690-93662709 None:intergenic 30.0%
AGCTTTCTTACATTGTTCTT+CGG - chr3_1:93662697-93662716 None:intergenic 30.0%
ACAATGTAAGAAAGCTTGTA+TGG + chr3_1:93662701-93662720 Msa0389050:CDS 30.0%
!! GCCTTTTTGAAAGTTAGAAT+AGG + chr3_1:93662831-93662850 Msa0389050:CDS 30.0%
ATGGTTGAATTTGAATTTGG+AGG - chr3_1:93662879-93662898 None:intergenic 30.0%
GTTATTGATCTTGTTCACAA+TGG - chr3_1:93662898-93662917 None:intergenic 30.0%
GATCAATAACAGAGAAACTT+TGG + chr3_1:93662908-93662927 Msa0389050:CDS 30.0%
TTGATTGTAGCAATATGTGT+CGG + chr3_1:93662981-93663000 Msa0389050:CDS 30.0%
CTTCTTGTACTGAAAAATGA+AGG - chr3_1:93663012-93663031 None:intergenic 30.0%
! AAGAATTTGGTTCGTTTACT+TGG + chr3_1:93663293-93663312 Msa0389050:intron 30.0%
TTGCATTGAAGTAATCATCA+AGG - chr3_1:93663529-93663548 None:intergenic 30.0%
TTGATTCATGTTCAACAACT+TGG - chr3_1:93663573-93663592 None:intergenic 30.0%
AATCAAAGCAAAACAAACAC+TGG + chr3_1:93663587-93663606 Msa0389050:intron 30.0%
!! AAGGTTGATGTGTATAGTTA+TGG + chr3_1:93663670-93663689 Msa0389050:intron 30.0%
TAGAAAATGTGTGGAAGAAA+TGG + chr3_1:93663721-93663740 Msa0389050:intron 30.0%
ATTGTTGGACAAGGAAAATT+TGG + chr3_1:93663841-93663860 Msa0389050:intron 30.0%
CAAGGAAAATTTGGAGAAAT+TGG + chr3_1:93663850-93663869 Msa0389050:intron 30.0%
! ATTGGATACTAATTTGTGAG+GGG - chr3_1:93663982-93664001 None:intergenic 30.0%
ACAAGTTTGTAAGCAAAGAT+TGG + chr3_1:93664015-93664034 Msa0389050:intron 30.0%
TGAACTTAAAACAACACAAC+AGG - chr3_1:93664056-93664075 None:intergenic 30.0%
TTTATGTTTGTGTATCAAGC+TGG + chr3_1:93664090-93664109 Msa0389050:intron 30.0%
TTATGTTTGTGTATCAAGCT+GGG + chr3_1:93664091-93664110 Msa0389050:intron 30.0%
! ATAAGTTGAGTGACAACAAA+AGG - chr3_1:93664241-93664260 None:intergenic 30.0%
! ATAATCTCATCGATTAGAAG+CGG + chr3_1:93664592-93664611 Msa0389050:intron 30.0%
! ATACTAATTTGTGACAGGTA+TGG + chr3_1:93664991-93665010 Msa0389050:intron 30.0%
AGAAGTTACCACTTTCAAAT+GGG - chr3_1:93665090-93665109 None:intergenic 30.0%
AAGAAGTTACCACTTTCAAA+TGG - chr3_1:93665091-93665110 None:intergenic 30.0%
AAAAAAGGGAAGAAGTAGAG+TGG - chr3_1:93661569-93661588 None:intergenic 35.0%
AAAAGAATCACCAATGGCTA+TGG - chr3_1:93661644-93661663 None:intergenic 35.0%
AGCAGTAAAAGAATCACCAA+TGG - chr3_1:93661650-93661669 None:intergenic 35.0%
! TTGGATTGGAAGAAAACCAA+AGG - chr3_1:93661719-93661738 None:intergenic 35.0%
!! AGTTCCACTTTTGATCCTTT+TGG - chr3_1:93661829-93661848 None:intergenic 35.0%
AAATTTGACTCCTTAAGCCT+TGG - chr3_1:93662057-93662076 None:intergenic 35.0%
TACTATGAAAGTGGAACTGT+GGG + chr3_1:93662168-93662187 Msa0389050:CDS 35.0%
!! AATTGGTCTTTGACAGATCA+GGG + chr3_1:93662217-93662236 Msa0389050:CDS 35.0%
! ATCAGGGTACTTGTATGTAT+TGG + chr3_1:93662233-93662252 Msa0389050:CDS 35.0%
! TCAGGGTACTTGTATGTATT+GGG + chr3_1:93662234-93662253 Msa0389050:CDS 35.0%
TGCCCTAACATAAAATTCAG+TGG - chr3_1:93662310-93662329 None:intergenic 35.0%
! AGGGCAACTCTTAATTTTGA+TGG + chr3_1:93662324-93662343 Msa0389050:CDS 35.0%
CAAGCATCCAAAGAATTCAA+CGG + chr3_1:93662362-93662381 Msa0389050:CDS 35.0%
TGTGATCATATTGCTAATGG+AGG + chr3_1:93662429-93662448 Msa0389050:CDS 35.0%
GTGATCATATTGCTAATGGA+GGG + chr3_1:93662430-93662449 Msa0389050:CDS 35.0%
AGACTTTGACTGACATTGAT+TGG + chr3_1:93662637-93662656 Msa0389050:CDS 35.0%
!! TTTGTTCTGTGGCTATTTTC+AGG + chr3_1:93662733-93662752 Msa0389050:CDS 35.0%
TCATATTTCCCATTTGAGAG+CGG - chr3_1:93662789-93662808 None:intergenic 35.0%
AGAATAGGTAATACCTCCAT+TGG + chr3_1:93662846-93662865 Msa0389050:CDS 35.0%
TAACAGAGAAACTTTGGTCT+TGG + chr3_1:93662914-93662933 Msa0389050:CDS 35.0%
!! TTGGTTGGTTATGTGCTTTT+GGG + chr3_1:93662933-93662952 Msa0389050:CDS 35.0%
CTTGTACTGAAAAATGAAGG+AGG - chr3_1:93663009-93663028 None:intergenic 35.0%
ATAAGTGAAGCAACGCAAAT+TGG - chr3_1:93663075-93663094 None:intergenic 35.0%
TAGCTCTTTGTCAAATCCAT+TGG - chr3_1:93663117-93663136 None:intergenic 35.0%
! AATGGATTTGACAAAGAGCT+AGG + chr3_1:93663116-93663135 Msa0389050:intron 35.0%
ATTTGACAAAGAGCTAGGAA+GGG + chr3_1:93663121-93663140 Msa0389050:intron 35.0%
! GCTTTTGGTATTGTTTACGA+AGG + chr3_1:93663146-93663165 Msa0389050:intron 35.0%
AGGAATGAGCTGAATGTTAT+TGG + chr3_1:93663257-93663276 Msa0389050:intron 35.0%
TCTCACTCATCACAAGAATT+TGG + chr3_1:93663280-93663299 Msa0389050:intron 35.0%
TAAGGCTAGAACTTGCAATA+GGG + chr3_1:93663423-93663442 Msa0389050:intron 35.0%
AAAACAAACACTGGCATAAG+AGG + chr3_1:93663596-93663615 Msa0389050:intron 35.0%
GCTTATGATTGCTACAAAGA+TGG + chr3_1:93663782-93663801 Msa0389050:intron 35.0%
TAGACCAAACATGAGAAATG+TGG + chr3_1:93663913-93663932 Msa0389050:intron 35.0%
TGTACCACATTTCTCATGTT+TGG - chr3_1:93663920-93663939 None:intergenic 35.0%
AATGTGGTACATATGCTTGA+AGG + chr3_1:93663929-93663948 Msa0389050:intron 35.0%
! ATACTAATTTGTGAGGGGTA+TGG - chr3_1:93663977-93663996 None:intergenic 35.0%
TATGTTTGTGTATCAAGCTG+GGG + chr3_1:93664092-93664111 Msa0389050:intron 35.0%
TATTGGGACCTACCTTAATA+TGG - chr3_1:93664121-93664140 None:intergenic 35.0%
AACTCCAAAAAATACCAACC+CGG + chr3_1:93664544-93664563 Msa0389050:intron 35.0%
! TCCCAATGATTTGATTTACC+CGG - chr3_1:93664566-93664585 None:intergenic 35.0%
! ACGTCGATTAACCAAATCAA+TGG + chr3_1:93664625-93664644 Msa0389050:intron 35.0%
! GTATGTCTTGTATCAAGTTG+TGG - chr3_1:93664887-93664906 None:intergenic 35.0%
!! CTCTAAATAAGTTGGTTAGC+AGG - chr3_1:93664963-93664982 None:intergenic 35.0%
!! AGAGTTGATGCAACTCTTAA+TGG - chr3_1:93665067-93665086 None:intergenic 35.0%
ACCAAAAACACCATAGCCAT+TGG + chr3_1:93661631-93661650 Msa0389050:CDS 40.0%
! ACCAATGGCTATGGTGTTTT+TGG - chr3_1:93661635-93661654 None:intergenic 40.0%
CTGAAACCAACAACTCTACA+TGG + chr3_1:93661668-93661687 Msa0389050:CDS 40.0%
AAGCAACCATGTAGAGTTGT+TGG - chr3_1:93661677-93661696 None:intergenic 40.0%
AAAAGGTCAGTGTCTTGGAT+TGG - chr3_1:93661733-93661752 None:intergenic 40.0%
GCAAAAAAAGGTCAGTGTCT+TGG - chr3_1:93661738-93661757 None:intergenic 40.0%
TTCCTGACAAAACTGTTGTG+TGG + chr3_1:93661779-93661798 Msa0389050:CDS 40.0%
!! TACCACACAACAGTTTTGTC+AGG - chr3_1:93661784-93661803 None:intergenic 40.0%
!! ACTTTTGATCCTTTTGGTGC+AGG - chr3_1:93661823-93661842 None:intergenic 40.0%
TGCACCAAAAGGATCAAAAG+TGG + chr3_1:93661822-93661841 Msa0389050:CDS 40.0%
!! TTGGTGCTAACTTCTCCAAA+TGG + chr3_1:93661865-93661884 Msa0389050:CDS 40.0%
CTAACTTCTCCAAATGGTGT+CGG + chr3_1:93661871-93661890 Msa0389050:CDS 40.0%
TAACTTCTCCAAATGGTGTC+GGG + chr3_1:93661872-93661891 Msa0389050:CDS 40.0%
!!! CCTTTTTGAAGTACCTGAGA+AGG - chr3_1:93662021-93662040 None:intergenic 40.0%
CCTTCTCAGGTACTTCAAAA+AGG + chr3_1:93662018-93662037 Msa0389050:CDS 40.0%
TCTCAGGTACTTCAAAAAGG+TGG + chr3_1:93662021-93662040 Msa0389050:CDS 40.0%
AAAGCTTTCTCCAAGGCTTA+AGG + chr3_1:93662044-93662063 Msa0389050:CDS 40.0%
! GAGCTTCTTTTGCAAGATGA+TGG + chr3_1:93662093-93662112 Msa0389050:CDS 40.0%
CTACTATGAAAGTGGAACTG+TGG + chr3_1:93662167-93662186 Msa0389050:CDS 40.0%
!! CAATTGGTCTTTGACAGATC+AGG + chr3_1:93662216-93662235 Msa0389050:CDS 40.0%
TCACTCTCCGTTGAATTCTT+TGG - chr3_1:93662372-93662391 None:intergenic 40.0%
ATTCAACGGAGAGTGATGTT+TGG + chr3_1:93662376-93662395 Msa0389050:CDS 40.0%
ATCAGGTTTAGACCACACTA+TGG - chr3_1:93662403-93662422 None:intergenic 40.0%
!!! TCAACCAGAGAGTATCGTTT+TGG - chr3_1:93662522-93662541 None:intergenic 40.0%
TCACATCCTTCTATGAAGTC+TGG - chr3_1:93662573-93662592 None:intergenic 40.0%
TGAAGCACAGAATCTGACAT+AGG - chr3_1:93662663-93662682 None:intergenic 40.0%
!! GGAAGATTGCTTTTGTTCTG+TGG + chr3_1:93662722-93662741 Msa0389050:CDS 40.0%
!!! TCTGTGGCTATTTTCAGGTT+AGG + chr3_1:93662738-93662757 Msa0389050:CDS 40.0%
TCAGGTTAGGTGATAGTTGT+TGG + chr3_1:93662751-93662770 Msa0389050:CDS 40.0%
AAGAAGTTACCGCTCTCAAA+TGG + chr3_1:93662777-93662796 Msa0389050:CDS 40.0%
AGAAGTTACCGCTCTCAAAT+GGG + chr3_1:93662778-93662797 Msa0389050:CDS 40.0%
! TCCAACTCTTAATGGTGCTA+AGG + chr3_1:93662809-93662828 Msa0389050:CDS 40.0%
ATAGGTAATACCTCCATTGG+TGG + chr3_1:93662849-93662868 Msa0389050:CDS 40.0%
!! AGAGAAACTTTGGTCTTGGT+TGG + chr3_1:93662918-93662937 Msa0389050:CDS 40.0%
!! CTTGGTTGGTTATGTGCTTT+TGG + chr3_1:93662932-93662951 Msa0389050:CDS 40.0%
GATTTGACAAAGAGCTAGGA+AGG + chr3_1:93663120-93663139 Msa0389050:intron 40.0%
TTTGACAAAGAGCTAGGAAG+GGG + chr3_1:93663122-93663141 Msa0389050:intron 40.0%
TTCTGTTGGATCAAGCTCAT+AGG + chr3_1:93663228-93663247 Msa0389050:intron 40.0%
TCTGTTGGATCAAGCTCATA+GGG + chr3_1:93663229-93663248 Msa0389050:intron 40.0%
ATCAAGCTCATAGGGAATTC+AGG + chr3_1:93663237-93663256 Msa0389050:intron 40.0%
! TTACTTGGATTTTGCGAGAG+TGG + chr3_1:93663308-93663327 Msa0389050:intron 40.0%
GTACATGAGCAATAGCACTT+TGG + chr3_1:93663355-93663374 Msa0389050:intron 40.0%
AAGAGAAACAGAAGCCAAGT+TGG + chr3_1:93663396-93663415 Msa0389050:intron 40.0%
! AGAAGCCAAGTTGGAAACTA+AGG + chr3_1:93663405-93663424 Msa0389050:intron 40.0%
!! TCTAGCCTTAGTTTCCAACT+TGG - chr3_1:93663413-93663432 None:intergenic 40.0%
CTAAGGCTAGAACTTGCAAT+AGG + chr3_1:93663422-93663441 Msa0389050:intron 40.0%
! TACATGAAGAGTGCATCACT+AGG + chr3_1:93663468-93663487 Msa0389050:intron 40.0%
! TCTGAGGCTTTATGTCACAA+TGG - chr3_1:93663499-93663518 None:intergenic 40.0%
! TCATCAAGGAGTATGTTCTG+AGG - chr3_1:93663515-93663534 None:intergenic 40.0%
ACTGGCATAAGAGGAACAAA+AGG + chr3_1:93663605-93663624 Msa0389050:intron 40.0%
CTGGCATAAGAGGAACAAAA+GGG + chr3_1:93663606-93663625 Msa0389050:intron 40.0%
! AAGGGTATGTTGCACTTGAA+TGG + chr3_1:93663624-93663643 Msa0389050:intron 40.0%
AAACATGCCTATCACTGCTA+AGG + chr3_1:93663651-93663670 Msa0389050:intron 40.0%
ACATCAACCTTAGCAGTGAT+AGG - chr3_1:93663661-93663680 None:intergenic 40.0%
! AGATGGTGATGTAGATGCAT+TGG + chr3_1:93663799-93663818 Msa0389050:intron 40.0%
!! TGATGTAGATGCATTGGTTG+AGG + chr3_1:93663805-93663824 Msa0389050:intron 40.0%
!! GATGTAGATGCATTGGTTGA+GGG + chr3_1:93663806-93663825 Msa0389050:intron 40.0%
!! TGCTATTTGGTGTGTTCAAG+AGG + chr3_1:93663880-93663899 Msa0389050:intron 40.0%
! CTCATGTTTGGTCTAAGACA+TGG - chr3_1:93663908-93663927 None:intergenic 40.0%
AAGCTGGGGTTTCCATATTA+AGG + chr3_1:93664106-93664125 Msa0389050:intron 40.0%
TGGGGTTTCCATATTAAGGT+AGG + chr3_1:93664110-93664129 Msa0389050:intron 40.0%
CGATAAACTATCGTGAGAAC+TGG + chr3_1:93664278-93664297 Msa0389050:intron 40.0%
ACTCCAAAAAATACCAACCC+GGG + chr3_1:93664545-93664564 Msa0389050:intron 40.0%
!!! TTACCCGGGTTGGTATTTTT+TGG - chr3_1:93664551-93664570 None:intergenic 40.0%
! ATGATTTGATTTACCCGGGT+TGG - chr3_1:93664561-93664580 None:intergenic 40.0%
ACCCGGGTAAATCAAATCAT+TGG + chr3_1:93664561-93664580 Msa0389050:intron 40.0%
! CCCAATGATTTGATTTACCC+GGG - chr3_1:93664565-93664584 None:intergenic 40.0%
CCCGGGTAAATCAAATCATT+GGG + chr3_1:93664562-93664581 Msa0389050:intron 40.0%
! CTAATTTGTGACAGGTATGG+TGG + chr3_1:93664994-93665013 Msa0389050:intron 40.0%
! TGCAACTCTTAATGGTGCTA+AGG - chr3_1:93665059-93665078 None:intergenic 40.0%
TCAACTCTCCCATTTGAAAG+TGG + chr3_1:93665079-93665098 Msa0389050:CDS 40.0%
TCAGGTTAGGTGATAGTTGT+TGG - chr3_1:93662751-93662770 None:intergenic 40.0%
!!! TCTGTGGCTATTTTCAGGTT+AGG - chr3_1:93662738-93662757 None:intergenic 40.0%
!! TGTGTTCTGTGGCTATTTTC+AGG - chr3_1:93665135-93665154 None:intergenic 40.0%
GGATGATTGTTTGTGTTCTG+TGG - chr3_1:93665146-93665165 None:intergenic 40.0%
GCAGTGTAGGAAATCTTGTA+TGG - chr3_1:93665167-93665186 None:intergenic 40.0%
! CTTTTACTGAAGAGCAGTGT+AGG - chr3_1:93665180-93665199 None:intergenic 40.0%
CTACACTGCTCTTCAGTAAA+AGG + chr3_1:93665178-93665197 Msa0389050:CDS 40.0%
GGTTTGAGCTAGAACACTGA+TGG - chr3_1:93661614-93661633 None:intergenic 45.0%
! ACATGGTTGCTTTCACCTTC+TGG + chr3_1:93661685-93661704 Msa0389050:CDS 45.0%
AGAGAAAGTCCTGCACCAAA+AGG + chr3_1:93661811-93661830 Msa0389050:CDS 45.0%
TGGAACTCAATGCCGATGAT+GGG + chr3_1:93661842-93661861 Msa0389050:CDS 45.0%
AGTTAGCACCAACCCATCAT+CGG - chr3_1:93661857-93661876 None:intergenic 45.0%
TTCCATAACCCGACACCATT+TGG - chr3_1:93661883-93661902 None:intergenic 45.0%
CGGGTTATGGAATACTACTG+AGG + chr3_1:93661891-93661910 Msa0389050:CDS 45.0%
TACAGGTAACTTTGTGCTCG+AGG + chr3_1:93661951-93661970 Msa0389050:CDS 45.0%
ACAGGTAACTTTGTGCTCGA+GGG + chr3_1:93661952-93661971 Msa0389050:CDS 45.0%
AAGTACCTGAGAAGGCAACA+AGG - chr3_1:93662013-93662032 None:intergenic 45.0%
AAGGTGGAAAGCTTTCTCCA+AGG + chr3_1:93662037-93662056 Msa0389050:CDS 45.0%
ACTGTGGGATCCAATACTTC+AGG + chr3_1:93662183-93662202 Msa0389050:CDS 45.0%
AGTTCCAGCACCTGAAGTAT+TGG - chr3_1:93662196-93662215 None:intergenic 45.0%
!! TTCAGGTGCTGGAACTCAAT+TGG + chr3_1:93662200-93662219 Msa0389050:CDS 45.0%
GTGATGTTTGGACCATAGTG+TGG + chr3_1:93662388-93662407 Msa0389050:CDS 45.0%
CATATTGCTAATGGAGGGAG+TGG + chr3_1:93662435-93662454 Msa0389050:CDS 45.0%
!! CGTTTTGGACACTGACATGT+TGG - chr3_1:93662507-93662526 None:intergenic 45.0%
GTGTCCAAAACGATACTCTC+TGG + chr3_1:93662515-93662534 Msa0389050:CDS 45.0%
TGCAAGCCAGACTTCATAGA+AGG + chr3_1:93662564-93662583 Msa0389050:CDS 45.0%
GCCTTAGCACCATTAAGAGT+TGG - chr3_1:93665055-93665074 None:intergenic 45.0%
ATTTGGAGGAAAGCCACCAA+TGG - chr3_1:93662865-93662884 None:intergenic 45.0%
GAGCTTGAAGAAGCTACCAA+TGG + chr3_1:93663098-93663117 Msa0389050:intron 45.0%
! TGGATTTTGCGAGAGTGGAA+AGG + chr3_1:93663313-93663332 Msa0389050:intron 45.0%
CTTGCAATAGGGATAGCTAG+AGG + chr3_1:93663434-93663453 Msa0389050:intron 45.0%
ATTGGTTGAGGGTGACAATG+AGG + chr3_1:93663817-93663836 Msa0389050:intron 45.0%
!! CAATGAGGCATTGTTGGACA+AGG + chr3_1:93663832-93663851 Msa0389050:intron 45.0%
! CTAATTTGTGAGGGGTATGG+TGG - chr3_1:93663974-93663993 None:intergenic 45.0%
! TGACAGGTATGGTGGAACTA+TGG + chr3_1:93665002-93665021 Msa0389050:intron 45.0%
! GACAGGTATGGTGGAACTAT+GGG + chr3_1:93665003-93665022 Msa0389050:intron 45.0%
!!! AAATATTTTTATTCTATATT+GGG - chr3_1:93664137-93664156 None:intergenic 5.0%
!!! TAAATATTTTTATTCTATAT+TGG - chr3_1:93664138-93664157 None:intergenic 5.0%
CCAAAGGCAAAGTCACCAGA+AGG - chr3_1:93661703-93661722 None:intergenic 50.0%
CCTTCTGGTGACTTTGCCTT+TGG + chr3_1:93661700-93661719 Msa0389050:CDS 50.0%
GTGGAACTCAATGCCGATGA+TGG + chr3_1:93661841-93661860 Msa0389050:CDS 50.0%
!! ACTCAATGCCGATGATGGGT+TGG + chr3_1:93661846-93661865 Msa0389050:CDS 50.0%
! CTCCAAATGGTGTCGGGTTA+TGG + chr3_1:93661878-93661897 Msa0389050:CDS 50.0%
CTCAGTGCGAAAGTTTCTCG+TGG + chr3_1:93661916-93661935 Msa0389050:CDS 50.0%
CGTGGTGTGTTCAACGATAC+AGG + chr3_1:93661934-93661953 Msa0389050:CDS 50.0%
!! GAAGGCAACAAGGTGTCACT+AGG - chr3_1:93662003-93662022 None:intergenic 50.0%
TGACACCTTGTTGCCTTCTC+AGG + chr3_1:93662005-93662024 Msa0389050:CDS 50.0%
GGATCCAATACTTCAGGTGC+TGG + chr3_1:93662189-93662208 Msa0389050:CDS 50.0%
AATGGAGGGAGTGGTGTTTG+TGG + chr3_1:93662444-93662463 Msa0389050:CDS 50.0%
GTTGATCCCGATGATCCACT+TGG + chr3_1:93662537-93662556 Msa0389050:CDS 50.0%
CAGCTACCAAGTGGATCATC+GGG - chr3_1:93662546-93662565 None:intergenic 50.0%
GCAGCTACCAAGTGGATCAT+CGG - chr3_1:93662547-93662566 None:intergenic 50.0%
! TTTCACTGCCACGCGAGTTT+TGG - chr3_1:93663195-93663214 None:intergenic 50.0%
!! GGGTGACAATGAGGCATTGT+TGG + chr3_1:93663826-93663845 Msa0389050:intron 50.0%
GGTTAGCAGGTGTTAGATGC+TGG - chr3_1:93664950-93664969 None:intergenic 50.0%
! AGGTATGGTGGAACTATGGG+AGG + chr3_1:93665006-93665025 Msa0389050:intron 50.0%
! AACTTTGTGCTCGAGGGTGC+TGG + chr3_1:93661958-93661977 Msa0389050:CDS 55.0%
! TCTGGCTTGCAGCTACCAAG+TGG - chr3_1:93662555-93662574 None:intergenic 55.0%
TGGAGGAAAGCCACCAATGG+AGG - chr3_1:93662862-93662881 None:intergenic 55.0%
! GAGCTAGGAAGGGGAGCTTT+TGG + chr3_1:93663131-93663150 Msa0389050:intron 55.0%
CACAGCTTCCAAAACTCGCG+TGG + chr3_1:93663184-93663203 Msa0389050:intron 55.0%
!! TTGTGCTCGAGGGTGCTGGT+TGG + chr3_1:93661962-93661981 Msa0389050:CDS 60.0%
!! TGTGCTCGAGGGTGCTGGTT+GGG + chr3_1:93661963-93661982 Msa0389050:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 93661559 93665207 93661559 ID=Msa0389050;Name=Msa0389050
chr3_1 mRNA 93661559 93665207 93661559 ID=Msa0389050-mRNA-1;Parent=Msa0389050;Name=Msa0389050-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|0.5|1|1|2|0|547
chr3_1 exon 93661559 93663002 93661559 ID=Msa0389050-mRNA-1:exon:26527;Parent=Msa0389050-mRNA-1
chr3_1 exon 93665008 93665207 93665008 ID=Msa0389050-mRNA-1:exon:26528;Parent=Msa0389050-mRNA-1
chr3_1 CDS 93661559 93663002 93661559 ID=Msa0389050-mRNA-1:cds;Parent=Msa0389050-mRNA-1
chr3_1 CDS 93665008 93665207 93665008 ID=Msa0389050-mRNA-1:cds;Parent=Msa0389050-mRNA-1
Gene Sequence

>Msa0389050

ATGGCTTCCACTCTACTTCTTCCCTTTTTTCTCTTCTCACTTATTCTACAATCCATCAGTGTTCTAGCTCAAACCAAAAACACCATAGCCATTGGTGATTCTTTTACTGCTGAAACCAACAACTCTACATGGTTGCTTTCACCTTCTGGTGACTTTGCCTTTGGTTTTCTTCCAATCCAAGACACTGACCTTTTTTTGCTTTCCATTTGGTATGCTAAAATTCCTGACAAAACTGTTGTGTGGTATGCTAATAGAGAAAGTCCTGCACCAAAAGGATCAAAAGTGGAACTCAATGCCGATGATGGGTTGGTGCTAACTTCTCCAAATGGTGTCGGGTTATGGAATACTACTGAGGTACTCAGTGCGAAAGTTTCTCGTGGTGTGTTCAACGATACAGGTAACTTTGTGCTCGAGGGTGCTGGTTGGGATACTTTCAAGTTTCCTAGTGACACCTTGTTGCCTTCTCAGGTACTTCAAAAAGGTGGAAAGCTTTCTCCAAGGCTTAAGGAGTCAAATTTTAGTAAAGGAAGGTTTGAGCTTCTTTTGCAAGATGATGGTAATCTTGTTATGCATTCTATTAATTTACCATCTGGTTATGCTAATGAAAACTACTATGAAAGTGGAACTGTGGGATCCAATACTTCAGGTGCTGGAACTCAATTGGTCTTTGACAGATCAGGGTACTTGTATGTATTGGGAGAGAACGATGAGAAATACAATGTGTCAGAACAAGAGAATAAAGTCTCTACCACTGAATTTTATGTTAGGGCAACTCTTAATTTTGATGGAGTGTTCACACTTTACAAGCATCCAAAGAATTCAACGGAGAGTGATGTTTGGACCATAGTGTGGTCTAAACCTGATAATATATGTGATCATATTGCTAATGGAGGGAGTGGTGTTTGTGGATATAATAGCTTCTGTACTTTGGGAGTTGATAAGAGACCAACATGTCAGTGTCCAAAACGATACTCTCTGGTTGATCCCGATGATCCACTTGGTAGCTGCAAGCCAGACTTCATAGAAGGATGTGAAGAAGATGAACTAAGTAAAACAGGAAATGATCTGTATGAGTTTGAGACTTTGACTGACATTGATTGGCCTATGTCAGATTCTGTGCTTCAAAAGCCTTTTACCGAAGAACAATGTAAGAAAGCTTGTATGGAAGATTGCTTTTGTTCTGTGGCTATTTTCAGGTTAGGTGATAGTTGTTGGAAGAAGAAGTTACCGCTCTCAAATGGGAAATATGATCCAACTCTTAATGGTGCTAAGGCCTTTTTGAAAGTTAGAATAGGTAATACCTCCATTGGTGGCTTTCCTCCAAATTCAAATTCAACCATTGTGAACAAGATCAATAACAGAGAAACTTTGGTCTTGGTTGGTTATGTGCTTTTGGGTAGCTCTACTATTCTCAATGTTGTATTGATTGTAGCAATATGTGTCGGTATGGTGGAACTATGGGAGGCATTATCTTTTCTCACTTTCAAGAAAGCCTTAGCACCATTAAGAGTTGCATCAACTCTCCCATTTGAAAGTGGTAACTTCTTCTTCCAACAACTATCACCTAACCTGAAAATAGCCACAGAACACAAACAATCATCCATACAAGATTTCCTACACTGCTCTTCAGTAAAAGGCCTTTGA

Protein sequence

>Msa0389050

MASTLLLPFFLFSLILQSISVLAQTKNTIAIGDSFTAETNNSTWLLSPSGDFAFGFLPIQDTDLFLLSIWYAKIPDKTVVWYANRESPAPKGSKVELNADDGLVLTSPNGVGLWNTTEVLSAKVSRGVFNDTGNFVLEGAGWDTFKFPSDTLLPSQVLQKGGKLSPRLKESNFSKGRFELLLQDDGNLVMHSINLPSGYANENYYESGTVGSNTSGAGTQLVFDRSGYLYVLGENDEKYNVSEQENKVSTTEFYVRATLNFDGVFTLYKHPKNSTESDVWTIVWSKPDNICDHIANGGSGVCGYNSFCTLGVDKRPTCQCPKRYSLVDPDDPLGSCKPDFIEGCEEDELSKTGNDLYEFETLTDIDWPMSDSVLQKPFTEEQCKKACMEDCFCSVAIFRLGDSCWKKKLPLSNGKYDPTLNGAKAFLKVRIGNTSIGGFPPNSNSTIVNKINNRETLVLVGYVLLGSSTILNVVLIVAICVGMVELWEALSFLTFKKALAPLRVASTLPFESGNFFFQQLSPNLKIATEHKQSSIQDFLHCSSVKGL*