Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0303710 | AES75857.2 | 48.387 | 124 | 25 | 3 | 28 | 151 | 955 | 1039 | 2.40e-18 | 94.4 |
| Msa0303710 | AES75857.2 | 52.703 | 148 | 17 | 3 | 28 | 175 | 764 | 858 | 2.61e-27 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0303710 | G7KNB4 | 48.387 | 124 | 25 | 3 | 28 | 151 | 955 | 1039 | 1.15e-18 | 94.4 |
| Msa0303710 | G7KNB4 | 52.703 | 148 | 17 | 3 | 28 | 175 | 764 | 858 | 1.25e-27 | 120 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0265670 | Msa0303710 | 0.877005 | 8.883988e-69 | -8.615850e-47 |
| Msa0265680 | Msa0303710 | 0.977223 | 2.357009e-143 | -8.615850e-47 |
| Msa0303590 | Msa0303710 | -0.822329 | 2.510814e-53 | -8.615850e-47 |
| Msa0303710 | Msa0575010 | 0.801211 | 1.002158e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0303710 | MtrunA17_Chr6g0476361 | 62.264 | 53 | 12 | 1 | 28 | 80 | 152 | 196 | 1.29e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 55 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAACTCTTTGTACTGTTAT+AGG | 0.229022 | 2_3:+60926523 | Msa0303710:CDS |
| AACCAAGAAACGACGAACTA+TGG | 0.243423 | 2_3:-60926314 | None:intergenic |
| TCCCATAGTTCGTCGTTTCT+TGG | 0.250866 | 2_3:+60926312 | Msa0303710:CDS |
| TATTCATTGTATCAGGTTAT+GGG | 0.311859 | 2_3:+60926438 | Msa0303710:intron |
| GCATTCAGGGATTGGGATAA+AGG | 0.313844 | 2_3:+60925560 | Msa0303710:CDS |
| ACCAAGACTCTCGAATTTCT+TGG | 0.319346 | 2_3:+60925628 | Msa0303710:CDS |
| GCTCCATTTCTGTGTAATTC+AGG | 0.324092 | 2_3:+60925832 | Msa0303710:CDS |
| TATGGGGCTAGTTGCTTTGT+GGG | 0.353653 | 2_3:+60926455 | Msa0303710:CDS |
| CCAAGACTCTCGAATTTCTT+GGG | 0.366359 | 2_3:+60925629 | Msa0303710:CDS |
| GTATCAAGTTTGTGTCTGTT+TGG | 0.371729 | 2_3:+60926499 | Msa0303710:CDS |
| GATGTGCCCAACCTTCCTTC+TGG | 0.379370 | 2_3:-60926089 | None:intergenic |
| ATCTAGATCAGTTGAAGGTT+TGG | 0.389443 | 2_3:+60926109 | Msa0303710:CDS |
| TGTTTAGGCTAGTCAGTTAT+CGG | 0.390169 | 2_3:+60926221 | Msa0303710:intron |
| TGATGTACAAAGGCCGCTTC+AGG | 0.390610 | 2_3:+60925860 | Msa0303710:CDS |
| TTATGGGGCTAGTTGCTTTG+TGG | 0.395906 | 2_3:+60926454 | Msa0303710:CDS |
| AGAGGAAAAGAAAGGCATTC+AGG | 0.398187 | 2_3:+60925546 | Msa0303710:CDS |
| TATCAAGTTTGTGTCTGTTT+GGG | 0.409572 | 2_3:+60926500 | Msa0303710:CDS |
| AGACCAAGCTCTCGAATACT+TGG | 0.425754 | 2_3:+60925595 | Msa0303710:CDS |
| TGCTGATTGGAGGTCGTCAA+TGG | 0.428212 | 2_3:+60926046 | Msa0303710:CDS |
| AAAGAAAGGCATTCAGGGAT+TGG | 0.430978 | 2_3:+60925552 | Msa0303710:CDS |
| TAATGTACAAAAGCCGCATC+AGG | 0.439180 | 2_3:+60925885 | Msa0303710:CDS |
| GGCATTCCAGAAGGAAGGTT+GGG | 0.443657 | 2_3:+60926083 | Msa0303710:CDS |
| TCTGCGGCGGCGTCTGAGTT+CGG | 0.453289 | 2_3:+60926344 | Msa0303710:CDS |
| TTGGAGGTCGTCAATGGCTT+GGG | 0.454685 | 2_3:+60926052 | Msa0303710:CDS |
| ATTGGAGGTCGTCAATGGCT+TGG | 0.460063 | 2_3:+60926051 | Msa0303710:CDS |
| CTGCCTGAATTACACAGAAA+TGG | 0.460254 | 2_3:-60925835 | None:intergenic |
| GTGGCCTGTTAGTTCTTAAG+TGG | 0.470450 | 2_3:+60926002 | Msa0303710:intron |
| CCCAAGAAATTCGAGAGTCT+TGG | 0.472024 | 2_3:-60925629 | None:intergenic |
| GAGGAAAAGAAAGGCATTCA+GGG | 0.474389 | 2_3:+60925547 | Msa0303710:CDS |
| CATTTCTGTGTAATTCAGGC+AGG | 0.491745 | 2_3:+60925836 | Msa0303710:CDS |
| AAGAAAGGCATTCAGGGATT+GGG | 0.496028 | 2_3:+60925553 | Msa0303710:CDS |
| CAGGGATTGGGATAAAGGAT+TGG | 0.500432 | 2_3:+60925565 | Msa0303710:CDS |
| GGCACATCTAGATCAGTTGA+AGG | 0.503288 | 2_3:+60926104 | Msa0303710:CDS |
| TCAATCTAGTGCTGATCAGT+TGG | 0.504193 | 2_3:+60926280 | Msa0303710:CDS |
| CCTCCAAGTATTCGAGAGCT+TGG | 0.525115 | 2_3:-60925598 | None:intergenic |
| CCAAGCTCTCGAATACTTGG+AGG | 0.529396 | 2_3:+60925598 | Msa0303710:CDS |
| TGGCATTCCAGAAGGAAGGT+TGG | 0.534110 | 2_3:+60926082 | Msa0303710:CDS |
| ACCAAGAAACGACGAACTAT+GGG | 0.534141 | 2_3:-60926313 | None:intergenic |
| TGTATTATTCCTCTATGTTG+AGG | 0.542500 | 2_3:+60925810 | Msa0303710:CDS |
| ATTCATTGTATCAGGTTATG+GGG | 0.551857 | 2_3:+60926439 | Msa0303710:intron |
| TTTGTACATTAAACCTGAAG+CGG | 0.553809 | 2_3:-60925873 | None:intergenic |
| TCAATGGCTTGGGATATCAT+TGG | 0.557764 | 2_3:+60926062 | Msa0303710:CDS |
| GATTGGGATAAAGGATTGGT+AGG | 0.566218 | 2_3:+60925569 | Msa0303710:CDS |
| TAAGATGCAGAGGAAAAGAA+AGG | 0.571541 | 2_3:+60925538 | None:intergenic |
| TCATTGGCATTCCAGAAGGA+AGG | 0.583501 | 2_3:+60926078 | Msa0303710:CDS |
| GATATCATTGGCATTCCAGA+AGG | 0.591588 | 2_3:+60926074 | Msa0303710:CDS |
| GAAATGGAGCCTCAACATAG+AGG | 0.592283 | 2_3:-60925819 | None:intergenic |
| CAAGCTCTCGAATACTTGGA+GGG | 0.597894 | 2_3:+60925599 | Msa0303710:CDS |
| AGTCAGTTATCGGAATCGCT+TGG | 0.610681 | 2_3:+60926231 | Msa0303710:CDS |
| ATTGGGATAAAGGATTGGTA+GGG | 0.632576 | 2_3:+60925570 | Msa0303710:CDS |
| TATCGGAATCGCTTGGTGTG+TGG | 0.640747 | 2_3:+60926238 | Msa0303710:CDS |
| CAGTCCCAACAAACCTGATG+CGG | 0.644394 | 2_3:-60925898 | None:intergenic |
| TCAGGCAGGCTGATGTACAA+AGG | 0.645570 | 2_3:+60925850 | Msa0303710:CDS |
| GTATTATAAATAAGATGCAG+AGG | 0.650791 | 2_3:+60925528 | None:intergenic |
| AAGCTCTCGAATACTTGGAG+GGG | 0.676051 | 2_3:+60925600 | Msa0303710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCATCTTGATAGAGTTT+TGG | + | chr2_3:60925716-60925735 | Msa0303710:intron | 25.0% |
| !! | GACAGATTCAAATATTTTAC+AGG | + | chr2_3:60925757-60925776 | Msa0303710:intron | 25.0% |
| !!! | CATATGTTACTTAGTTTTGA+CGG | + | chr2_3:60925980-60925999 | Msa0303710:intron | 25.0% |
| !!! | TCATTTCTTTTTTTGCTGAT+TGG | + | chr2_3:60926033-60926052 | Msa0303710:CDS | 25.0% |
| !!! | AGTTTTTTACTTGCTGATTA+AGG | + | chr2_3:60926164-60926183 | Msa0303710:intron | 25.0% |
| !!! | GTTTTTTACTTGCTGATTAA+GGG | + | chr2_3:60926165-60926184 | Msa0303710:intron | 25.0% |
| ! | TTATTCATTGTATCAGGTTA+TGG | + | chr2_3:60926437-60926456 | Msa0303710:intron | 25.0% |
| ! | TATTCATTGTATCAGGTTAT+GGG | + | chr2_3:60926438-60926457 | Msa0303710:intron | 25.0% |
| !! | ATATCATCTTGATAGAGTTT+TGG | + | chr2_3:60925716-60925735 | Msa0303710:intron | 25.0% |
| !! | GACAGATTCAAATATTTTAC+AGG | + | chr2_3:60925757-60925776 | Msa0303710:intron | 25.0% |
| !!! | CATATGTTACTTAGTTTTGA+CGG | + | chr2_3:60925980-60925999 | Msa0303710:intron | 25.0% |
| !!! | TCATTTCTTTTTTTGCTGAT+TGG | + | chr2_3:60926033-60926052 | Msa0303710:CDS | 25.0% |
| !!! | AGTTTTTTACTTGCTGATTA+AGG | + | chr2_3:60926164-60926183 | Msa0303710:intron | 25.0% |
| !!! | GTTTTTTACTTGCTGATTAA+GGG | + | chr2_3:60926165-60926184 | Msa0303710:intron | 25.0% |
| ! | TTATTCATTGTATCAGGTTA+TGG | + | chr2_3:60926437-60926456 | Msa0303710:intron | 25.0% |
| ! | TATTCATTGTATCAGGTTAT+GGG | + | chr2_3:60926438-60926457 | Msa0303710:intron | 25.0% |
| TGTATTATTCCTCTATGTTG+AGG | + | chr2_3:60925810-60925829 | Msa0303710:CDS | 30.0% | |
| TTTGTACATTAAACCTGAAG+CGG | - | chr2_3:60925876-60925895 | None:intergenic | 30.0% | |
| AAATCCACTTAAGAACTAAC+AGG | - | chr2_3:60926009-60926028 | None:intergenic | 30.0% | |
| !!! | TTTCTTTTTTTGCTGATTGG+AGG | + | chr2_3:60926036-60926055 | Msa0303710:CDS | 30.0% |
| TTCAGATTATGTTCGCAATA+TGG | + | chr2_3:60926135-60926154 | Msa0303710:intron | 30.0% | |
| !!! | TTCTTGGTTTTAAGTTTCTG+CGG | + | chr2_3:60926328-60926347 | Msa0303710:CDS | 30.0% |
| CCAAAGAAAAGTAAATTGCA+GGG | - | chr2_3:60926406-60926425 | None:intergenic | 30.0% | |
| !! | CCTGCAATTTACTTTTCTTT+GGG | + | chr2_3:60926404-60926423 | Msa0303710:intron | 30.0% |
| !! | ATTTACTTTTCTTTGGGCAA+AGG | + | chr2_3:60926410-60926429 | Msa0303710:intron | 30.0% |
| ATTCATTGTATCAGGTTATG+GGG | + | chr2_3:60926439-60926458 | Msa0303710:intron | 30.0% | |
| TATCAAGTTTGTGTCTGTTT+GGG | + | chr2_3:60926500-60926519 | Msa0303710:CDS | 30.0% | |
| TGTATTATTCCTCTATGTTG+AGG | + | chr2_3:60925810-60925829 | Msa0303710:CDS | 30.0% | |
| TTTGTACATTAAACCTGAAG+CGG | - | chr2_3:60925876-60925895 | None:intergenic | 30.0% | |
| AAATCCACTTAAGAACTAAC+AGG | - | chr2_3:60926009-60926028 | None:intergenic | 30.0% | |
| !!! | TTTCTTTTTTTGCTGATTGG+AGG | + | chr2_3:60926036-60926055 | Msa0303710:CDS | 30.0% |
| TTCAGATTATGTTCGCAATA+TGG | + | chr2_3:60926135-60926154 | Msa0303710:intron | 30.0% | |
| !!! | TTCTTGGTTTTAAGTTTCTG+CGG | + | chr2_3:60926328-60926347 | Msa0303710:CDS | 30.0% |
| CCAAAGAAAAGTAAATTGCA+GGG | - | chr2_3:60926406-60926425 | None:intergenic | 30.0% | |
| !! | CCTGCAATTTACTTTTCTTT+GGG | + | chr2_3:60926404-60926423 | Msa0303710:intron | 30.0% |
| !! | ATTTACTTTTCTTTGGGCAA+AGG | + | chr2_3:60926410-60926429 | Msa0303710:intron | 30.0% |
| ATTCATTGTATCAGGTTATG+GGG | + | chr2_3:60926439-60926458 | Msa0303710:intron | 30.0% | |
| TATCAAGTTTGTGTCTGTTT+GGG | + | chr2_3:60926500-60926519 | Msa0303710:CDS | 30.0% | |
| ! | ATTGGGATAAAGGATTGGTA+GGG | + | chr2_3:60925570-60925589 | Msa0303710:CDS | 35.0% |
| ATCAGTTTCTATCACAGACT+CGG | + | chr2_3:60925689-60925708 | Msa0303710:intron | 35.0% | |
| AAAGACGATAAACTGATCTC+AGG | - | chr2_3:60925937-60925956 | None:intergenic | 35.0% | |
| !!! | ATGTTACTTAGTTTTGACGG+TGG | + | chr2_3:60925983-60926002 | Msa0303710:intron | 35.0% |
| ATCTAGATCAGTTGAAGGTT+TGG | + | chr2_3:60926109-60926128 | Msa0303710:CDS | 35.0% | |
| !! | GTTATTAGCCTTTCAAGCTT+CGG | + | chr2_3:60926192-60926211 | Msa0303710:intron | 35.0% |
| ! | TGTTTAGGCTAGTCAGTTAT+CGG | + | chr2_3:60926221-60926240 | Msa0303710:intron | 35.0% |
| !! | TGTTTTTGTTTGTTCCTAGC+CGG | + | chr2_3:60926374-60926393 | Msa0303710:intron | 35.0% |
| !! | CCCTGCAATTTACTTTTCTT+TGG | + | chr2_3:60926403-60926422 | Msa0303710:intron | 35.0% |
| CCCAAAGAAAAGTAAATTGC+AGG | - | chr2_3:60926407-60926426 | None:intergenic | 35.0% | |
| GGTCTGTTATTCATTGTATC+AGG | + | chr2_3:60926431-60926450 | Msa0303710:intron | 35.0% | |
| GTATCAAGTTTGTGTCTGTT+TGG | + | chr2_3:60926499-60926518 | Msa0303710:CDS | 35.0% | |
| CGAACTCTTTGTACTGTTAT+AGG | + | chr2_3:60926523-60926542 | Msa0303710:CDS | 35.0% | |
| ! | ATTGGGATAAAGGATTGGTA+GGG | + | chr2_3:60925570-60925589 | Msa0303710:CDS | 35.0% |
| ATCAGTTTCTATCACAGACT+CGG | + | chr2_3:60925689-60925708 | Msa0303710:intron | 35.0% | |
| AAAGACGATAAACTGATCTC+AGG | - | chr2_3:60925937-60925956 | None:intergenic | 35.0% | |
| !!! | ATGTTACTTAGTTTTGACGG+TGG | + | chr2_3:60925983-60926002 | Msa0303710:intron | 35.0% |
| ATCTAGATCAGTTGAAGGTT+TGG | + | chr2_3:60926109-60926128 | Msa0303710:CDS | 35.0% | |
| !! | GTTATTAGCCTTTCAAGCTT+CGG | + | chr2_3:60926192-60926211 | Msa0303710:intron | 35.0% |
| ! | TGTTTAGGCTAGTCAGTTAT+CGG | + | chr2_3:60926221-60926240 | Msa0303710:intron | 35.0% |
| !! | TGTTTTTGTTTGTTCCTAGC+CGG | + | chr2_3:60926374-60926393 | Msa0303710:intron | 35.0% |
| !! | CCCTGCAATTTACTTTTCTT+TGG | + | chr2_3:60926403-60926422 | Msa0303710:intron | 35.0% |
| CCCAAAGAAAAGTAAATTGC+AGG | - | chr2_3:60926407-60926426 | None:intergenic | 35.0% | |
| GGTCTGTTATTCATTGTATC+AGG | + | chr2_3:60926431-60926450 | Msa0303710:intron | 35.0% | |
| GTATCAAGTTTGTGTCTGTT+TGG | + | chr2_3:60926499-60926518 | Msa0303710:CDS | 35.0% | |
| CGAACTCTTTGTACTGTTAT+AGG | + | chr2_3:60926523-60926542 | Msa0303710:CDS | 35.0% | |
| !! | AGAGGAAAAGAAAGGCATTC+AGG | + | chr2_3:60925546-60925565 | Msa0303710:CDS | 40.0% |
| !! | GAGGAAAAGAAAGGCATTCA+GGG | + | chr2_3:60925547-60925566 | Msa0303710:CDS | 40.0% |
| !! | AAAGAAAGGCATTCAGGGAT+TGG | + | chr2_3:60925552-60925571 | Msa0303710:CDS | 40.0% |
| !! | AAGAAAGGCATTCAGGGATT+GGG | + | chr2_3:60925553-60925572 | Msa0303710:CDS | 40.0% |
| ! | GATTGGGATAAAGGATTGGT+AGG | + | chr2_3:60925569-60925588 | Msa0303710:CDS | 40.0% |
| ACCAAGACTCTCGAATTTCT+TGG | + | chr2_3:60925628-60925647 | Msa0303710:CDS | 40.0% | |
| CCAAGACTCTCGAATTTCTT+GGG | + | chr2_3:60925629-60925648 | Msa0303710:CDS | 40.0% | |
| GCTCCATTTCTGTGTAATTC+AGG | + | chr2_3:60925832-60925851 | Msa0303710:CDS | 40.0% | |
| CTGCCTGAATTACACAGAAA+TGG | - | chr2_3:60925838-60925857 | None:intergenic | 40.0% | |
| CATTTCTGTGTAATTCAGGC+AGG | + | chr2_3:60925836-60925855 | Msa0303710:CDS | 40.0% | |
| TAATGTACAAAAGCCGCATC+AGG | + | chr2_3:60925885-60925904 | Msa0303710:CDS | 40.0% | |
| GATCAGTTTATCGTCTTTGC+TGG | + | chr2_3:60925939-60925958 | Msa0303710:intron | 40.0% | |
| TTATCGTCTTTGCTGGAAGT+TGG | + | chr2_3:60925946-60925965 | Msa0303710:intron | 40.0% | |
| ! | TCAATGGCTTGGGATATCAT+TGG | + | chr2_3:60926062-60926081 | Msa0303710:CDS | 40.0% |
| GATATCATTGGCATTCCAGA+AGG | + | chr2_3:60926074-60926093 | Msa0303710:CDS | 40.0% | |
| !! | TCAATCTAGTGCTGATCAGT+TGG | + | chr2_3:60926280-60926299 | Msa0303710:CDS | 40.0% |
| ACCAAGAAACGACGAACTAT+GGG | - | chr2_3:60926316-60926335 | None:intergenic | 40.0% | |
| AACCAAGAAACGACGAACTA+TGG | - | chr2_3:60926317-60926336 | None:intergenic | 40.0% | |
| !!! | TTGGTTTTAAGTTTCTGCGG+CGG | + | chr2_3:60926331-60926350 | Msa0303710:CDS | 40.0% |
| ! | TGCTTTGTGGGAGACTTTTA+AGG | + | chr2_3:60926467-60926486 | Msa0303710:CDS | 40.0% |
| !! | AGAGGAAAAGAAAGGCATTC+AGG | + | chr2_3:60925546-60925565 | Msa0303710:CDS | 40.0% |
| !! | GAGGAAAAGAAAGGCATTCA+GGG | + | chr2_3:60925547-60925566 | Msa0303710:CDS | 40.0% |
| !! | AAAGAAAGGCATTCAGGGAT+TGG | + | chr2_3:60925552-60925571 | Msa0303710:CDS | 40.0% |
| !! | AAGAAAGGCATTCAGGGATT+GGG | + | chr2_3:60925553-60925572 | Msa0303710:CDS | 40.0% |
| ! | GATTGGGATAAAGGATTGGT+AGG | + | chr2_3:60925569-60925588 | Msa0303710:CDS | 40.0% |
| ACCAAGACTCTCGAATTTCT+TGG | + | chr2_3:60925628-60925647 | Msa0303710:CDS | 40.0% | |
| CCAAGACTCTCGAATTTCTT+GGG | + | chr2_3:60925629-60925648 | Msa0303710:CDS | 40.0% | |
| GCTCCATTTCTGTGTAATTC+AGG | + | chr2_3:60925832-60925851 | Msa0303710:CDS | 40.0% | |
| CTGCCTGAATTACACAGAAA+TGG | - | chr2_3:60925838-60925857 | None:intergenic | 40.0% | |
| CATTTCTGTGTAATTCAGGC+AGG | + | chr2_3:60925836-60925855 | Msa0303710:CDS | 40.0% | |
| TAATGTACAAAAGCCGCATC+AGG | + | chr2_3:60925885-60925904 | Msa0303710:CDS | 40.0% | |
| GATCAGTTTATCGTCTTTGC+TGG | + | chr2_3:60925939-60925958 | Msa0303710:intron | 40.0% | |
| TTATCGTCTTTGCTGGAAGT+TGG | + | chr2_3:60925946-60925965 | Msa0303710:intron | 40.0% | |
| ! | TCAATGGCTTGGGATATCAT+TGG | + | chr2_3:60926062-60926081 | Msa0303710:CDS | 40.0% |
| GATATCATTGGCATTCCAGA+AGG | + | chr2_3:60926074-60926093 | Msa0303710:CDS | 40.0% | |
| !! | TCAATCTAGTGCTGATCAGT+TGG | + | chr2_3:60926280-60926299 | Msa0303710:CDS | 40.0% |
| ACCAAGAAACGACGAACTAT+GGG | - | chr2_3:60926316-60926335 | None:intergenic | 40.0% | |
| AACCAAGAAACGACGAACTA+TGG | - | chr2_3:60926317-60926336 | None:intergenic | 40.0% | |
| !!! | TTGGTTTTAAGTTTCTGCGG+CGG | + | chr2_3:60926331-60926350 | Msa0303710:CDS | 40.0% |
| ! | TGCTTTGTGGGAGACTTTTA+AGG | + | chr2_3:60926467-60926486 | Msa0303710:CDS | 40.0% |
| GCATTCAGGGATTGGGATAA+AGG | + | chr2_3:60925560-60925579 | Msa0303710:CDS | 45.0% | |
| CAGGGATTGGGATAAAGGAT+TGG | + | chr2_3:60925565-60925584 | Msa0303710:CDS | 45.0% | |
| AGACCAAGCTCTCGAATACT+TGG | + | chr2_3:60925595-60925614 | Msa0303710:CDS | 45.0% | |
| CAAGCTCTCGAATACTTGGA+GGG | + | chr2_3:60925599-60925618 | Msa0303710:CDS | 45.0% | |
| AAGCTCTCGAATACTTGGAG+GGG | + | chr2_3:60925600-60925619 | Msa0303710:CDS | 45.0% | |
| CCCAAGAAATTCGAGAGTCT+TGG | - | chr2_3:60925632-60925651 | None:intergenic | 45.0% | |
| ! | TTGGAGTATTCTGCACAGAC+AGG | + | chr2_3:60925735-60925754 | Msa0303710:intron | 45.0% |
| GAAATGGAGCCTCAACATAG+AGG | - | chr2_3:60925822-60925841 | None:intergenic | 45.0% | |
| AAAAGCCGCATCAGGTTTGT+TGG | + | chr2_3:60925893-60925912 | Msa0303710:intron | 45.0% | |
| ! | AAAGCCGCATCAGGTTTGTT+GGG | + | chr2_3:60925894-60925913 | Msa0303710:intron | 45.0% |
| ! | GTGGCCTGTTAGTTCTTAAG+TGG | + | chr2_3:60926002-60926021 | Msa0303710:intron | 45.0% |
| TCATTGGCATTCCAGAAGGA+AGG | + | chr2_3:60926078-60926097 | Msa0303710:CDS | 45.0% | |
| GGCACATCTAGATCAGTTGA+AGG | + | chr2_3:60926104-60926123 | Msa0303710:CDS | 45.0% | |
| AGTCAGTTATCGGAATCGCT+TGG | + | chr2_3:60926231-60926250 | Msa0303710:CDS | 45.0% | |
| TCCCATAGTTCGTCGTTTCT+TGG | + | chr2_3:60926312-60926331 | Msa0303710:CDS | 45.0% | |
| !! | TTATGGGGCTAGTTGCTTTG+TGG | + | chr2_3:60926454-60926473 | Msa0303710:CDS | 45.0% |
| !! | TATGGGGCTAGTTGCTTTGT+GGG | + | chr2_3:60926455-60926474 | Msa0303710:CDS | 45.0% |
| GCATTCAGGGATTGGGATAA+AGG | + | chr2_3:60925560-60925579 | Msa0303710:CDS | 45.0% | |
| CAGGGATTGGGATAAAGGAT+TGG | + | chr2_3:60925565-60925584 | Msa0303710:CDS | 45.0% | |
| AGACCAAGCTCTCGAATACT+TGG | + | chr2_3:60925595-60925614 | Msa0303710:CDS | 45.0% | |
| CAAGCTCTCGAATACTTGGA+GGG | + | chr2_3:60925599-60925618 | Msa0303710:CDS | 45.0% | |
| AAGCTCTCGAATACTTGGAG+GGG | + | chr2_3:60925600-60925619 | Msa0303710:CDS | 45.0% | |
| CCCAAGAAATTCGAGAGTCT+TGG | - | chr2_3:60925632-60925651 | None:intergenic | 45.0% | |
| ! | TTGGAGTATTCTGCACAGAC+AGG | + | chr2_3:60925735-60925754 | Msa0303710:intron | 45.0% |
| GAAATGGAGCCTCAACATAG+AGG | - | chr2_3:60925822-60925841 | None:intergenic | 45.0% | |
| AAAAGCCGCATCAGGTTTGT+TGG | + | chr2_3:60925893-60925912 | Msa0303710:intron | 45.0% | |
| ! | AAAGCCGCATCAGGTTTGTT+GGG | + | chr2_3:60925894-60925913 | Msa0303710:intron | 45.0% |
| ! | GTGGCCTGTTAGTTCTTAAG+TGG | + | chr2_3:60926002-60926021 | Msa0303710:intron | 45.0% |
| TCATTGGCATTCCAGAAGGA+AGG | + | chr2_3:60926078-60926097 | Msa0303710:CDS | 45.0% | |
| GGCACATCTAGATCAGTTGA+AGG | + | chr2_3:60926104-60926123 | Msa0303710:CDS | 45.0% | |
| AGTCAGTTATCGGAATCGCT+TGG | + | chr2_3:60926231-60926250 | Msa0303710:CDS | 45.0% | |
| TCCCATAGTTCGTCGTTTCT+TGG | + | chr2_3:60926312-60926331 | Msa0303710:CDS | 45.0% | |
| !! | TTATGGGGCTAGTTGCTTTG+TGG | + | chr2_3:60926454-60926473 | Msa0303710:CDS | 45.0% |
| !! | TATGGGGCTAGTTGCTTTGT+GGG | + | chr2_3:60926455-60926474 | Msa0303710:CDS | 45.0% |
| CCTCCAAGTATTCGAGAGCT+TGG | - | chr2_3:60925601-60925620 | None:intergenic | 50.0% | |
| CCAAGCTCTCGAATACTTGG+AGG | + | chr2_3:60925598-60925617 | Msa0303710:CDS | 50.0% | |
| TCAGGCAGGCTGATGTACAA+AGG | + | chr2_3:60925850-60925869 | Msa0303710:CDS | 50.0% | |
| TGATGTACAAAGGCCGCTTC+AGG | + | chr2_3:60925860-60925879 | Msa0303710:CDS | 50.0% | |
| CAGTCCCAACAAACCTGATG+CGG | - | chr2_3:60925901-60925920 | None:intergenic | 50.0% | |
| ! | TGCTGATTGGAGGTCGTCAA+TGG | + | chr2_3:60926046-60926065 | Msa0303710:CDS | 50.0% |
| ATTGGAGGTCGTCAATGGCT+TGG | + | chr2_3:60926051-60926070 | Msa0303710:CDS | 50.0% | |
| TTGGAGGTCGTCAATGGCTT+GGG | + | chr2_3:60926052-60926071 | Msa0303710:CDS | 50.0% | |
| TGGCATTCCAGAAGGAAGGT+TGG | + | chr2_3:60926082-60926101 | Msa0303710:CDS | 50.0% | |
| GGCATTCCAGAAGGAAGGTT+GGG | + | chr2_3:60926083-60926102 | Msa0303710:CDS | 50.0% | |
| !! | AAGCTTCGGTGTCGCTGTTT+AGG | + | chr2_3:60926206-60926225 | Msa0303710:intron | 50.0% |
| !! | TATCGGAATCGCTTGGTGTG+TGG | + | chr2_3:60926238-60926257 | Msa0303710:CDS | 50.0% |
| TGTTTGTTCCTAGCCGGCAT+AGG | + | chr2_3:60926380-60926399 | Msa0303710:intron | 50.0% | |
| GTAAATTGCAGGGCCTATGC+CGG | - | chr2_3:60926396-60926415 | None:intergenic | 50.0% | |
| CCTCCAAGTATTCGAGAGCT+TGG | - | chr2_3:60925601-60925620 | None:intergenic | 50.0% | |
| CCAAGCTCTCGAATACTTGG+AGG | + | chr2_3:60925598-60925617 | Msa0303710:CDS | 50.0% | |
| TCAGGCAGGCTGATGTACAA+AGG | + | chr2_3:60925850-60925869 | Msa0303710:CDS | 50.0% | |
| TGATGTACAAAGGCCGCTTC+AGG | + | chr2_3:60925860-60925879 | Msa0303710:CDS | 50.0% | |
| CAGTCCCAACAAACCTGATG+CGG | - | chr2_3:60925901-60925920 | None:intergenic | 50.0% | |
| ! | TGCTGATTGGAGGTCGTCAA+TGG | + | chr2_3:60926046-60926065 | Msa0303710:CDS | 50.0% |
| ATTGGAGGTCGTCAATGGCT+TGG | + | chr2_3:60926051-60926070 | Msa0303710:CDS | 50.0% | |
| TTGGAGGTCGTCAATGGCTT+GGG | + | chr2_3:60926052-60926071 | Msa0303710:CDS | 50.0% | |
| TGGCATTCCAGAAGGAAGGT+TGG | + | chr2_3:60926082-60926101 | Msa0303710:CDS | 50.0% | |
| GGCATTCCAGAAGGAAGGTT+GGG | + | chr2_3:60926083-60926102 | Msa0303710:CDS | 50.0% | |
| !! | AAGCTTCGGTGTCGCTGTTT+AGG | + | chr2_3:60926206-60926225 | Msa0303710:intron | 50.0% |
| !! | TATCGGAATCGCTTGGTGTG+TGG | + | chr2_3:60926238-60926257 | Msa0303710:CDS | 50.0% |
| TGTTTGTTCCTAGCCGGCAT+AGG | + | chr2_3:60926380-60926399 | Msa0303710:intron | 50.0% | |
| GTAAATTGCAGGGCCTATGC+CGG | - | chr2_3:60926396-60926415 | None:intergenic | 50.0% | |
| GATGTGCCCAACCTTCCTTC+TGG | - | chr2_3:60926092-60926111 | None:intergenic | 55.0% | |
| CAGCGACACCGAAGCTTGAA+AGG | - | chr2_3:60926203-60926222 | None:intergenic | 55.0% | |
| GATGTGCCCAACCTTCCTTC+TGG | - | chr2_3:60926092-60926111 | None:intergenic | 55.0% | |
| CAGCGACACCGAAGCTTGAA+AGG | - | chr2_3:60926203-60926222 | None:intergenic | 55.0% | |
| TCTGCGGCGGCGTCTGAGTT+CGG | + | chr2_3:60926344-60926363 | Msa0303710:CDS | 65.0% | |
| ! | TTGCAGGGCCTATGCCGGCT+AGG | - | chr2_3:60926391-60926410 | None:intergenic | 65.0% |
| TCTGCGGCGGCGTCTGAGTT+CGG | + | chr2_3:60926344-60926363 | Msa0303710:CDS | 65.0% | |
| ! | TTGCAGGGCCTATGCCGGCT+AGG | - | chr2_3:60926391-60926410 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 60925542 | 60926554 | 60925542 | ID=Msa0303710;Name=Msa0303710 |
| chr2_3 | mRNA | 60925542 | 60926554 | 60925542 | ID=Msa0303710-mRNA-1;Parent=Msa0303710;Name=Msa0303710-mRNA-1;_AED=0.61;_eAED=0.69;_QI=0|0|0|0.6|1|1|5|0|208 |
| chr2_3 | exon | 60925542 | 60925674 | 60925542 | ID=Msa0303710-mRNA-1:exon:20000;Parent=Msa0303710-mRNA-1 |
| chr2_3 | exon | 60925779 | 60925906 | 60925779 | ID=Msa0303710-mRNA-1:exon:20001;Parent=Msa0303710-mRNA-1 |
| chr2_3 | exon | 60926014 | 60926130 | 60926014 | ID=Msa0303710-mRNA-1:exon:20002;Parent=Msa0303710-mRNA-1 |
| chr2_3 | exon | 60926228 | 60926374 | 60926228 | ID=Msa0303710-mRNA-1:exon:20003;Parent=Msa0303710-mRNA-1 |
| chr2_3 | exon | 60926453 | 60926554 | 60926453 | ID=Msa0303710-mRNA-1:exon:20004;Parent=Msa0303710-mRNA-1 |
| chr2_3 | CDS | 60925542 | 60925674 | 60925542 | ID=Msa0303710-mRNA-1:cds;Parent=Msa0303710-mRNA-1 |
| chr2_3 | CDS | 60925779 | 60925906 | 60925779 | ID=Msa0303710-mRNA-1:cds;Parent=Msa0303710-mRNA-1 |
| chr2_3 | CDS | 60926014 | 60926130 | 60926014 | ID=Msa0303710-mRNA-1:cds;Parent=Msa0303710-mRNA-1 |
| chr2_3 | CDS | 60926228 | 60926374 | 60926228 | ID=Msa0303710-mRNA-1:cds;Parent=Msa0303710-mRNA-1 |
| chr2_3 | CDS | 60926453 | 60926554 | 60926453 | ID=Msa0303710-mRNA-1:cds;Parent=Msa0303710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
