AlfalfaGEDB | Msa0308090

M. sativa cultivar zhongmu-4 / Msa0308090

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0042802 GO:0097159 GO:1901363
PFAM: PF05182.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0308090	XP_013463834.1	96.716	1340	32	3	1	1340	1	1328	0.0	2615

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0308090	sp\|F4KDH9\|FIPS5_ARATH	45.848	554	214	16	1	518	1	504	7.14e-114	389
Msa0308090	sp\|F4KDH9\|FIPS5_ARATH	39.263	624	316	16	717	1325	603	1178	2.54e-89	319

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0064020	Msa0308090	0.819990	8.689525e-53	-8.615850e-47
Msa0206330	Msa0308090	0.868141	8.138538e-66	-8.615850e-47
Msa0249310	Msa0308090	0.808457	3.068672e-50	-8.615850e-47
Msa0308090	Msa0611220	0.860514	1.959069e-63	-8.615850e-47
Msa0308090	Msa0693880	0.881158	3.028999e-70	-8.615850e-47
Msa0308090	Msa1268230	0.846049	2.772077e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0308090	MtrunA17_Chr2g0304751	96.716	1340	32	3	1	1340	1	1328	0.0	2615
Msa0308090	MtrunA17_Chr4g0068351	32.353	204	88	5	315	517	157	311	2.38e-21	101

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0308090	AT5G58040.2	45.848	554	214	16	1	518	1	504	5.89e-115	390
Msa0308090	AT5G58040.2	40.312	640	317	17	717	1340	603	1193	9.00e-98	341
Msa0308090	AT5G58040.1	45.848	554	214	16	1	518	1	504	7.26e-115	389
Msa0308090	AT5G58040.1	39.263	624	316	16	717	1325	603	1178	2.58e-90	319
Msa0308090	AT3G66652.3	57.143	49	21	0	340	388	149	197	5.36e-11	68.2
Msa0308090	AT3G66652.1	57.143	49	21	0	340	388	149	197	5.36e-11	68.2
Msa0308090	AT3G66652.2	57.143	49	21	0	340	388	149	197	5.36e-11	68.2

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Find 476 sgRNAs with CRISPR-Local

Find 928 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTGGGGTTGTGGGTG+AGG	0.415719	2_4:+2141581	Msa0308090:CDS
AAAAGTCTAGAAAATCCAAA+TGG	0.556779	2_4:+2149108	Msa0308090:CDS
AAACATTAACTGGTTATTAC+AGG	0.345848	2_4:+2151224	Msa0308090:three_prime_UTR
AAAGGCGATCTAGGCAGGAA+AGG	0.618493	2_4:+2148953	Msa0308090:CDS
AAAGTTCACATCATAAGGGG+CGG	0.626082	2_4:+2148890	Msa0308090:CDS
AAATCACATGTAGTTAGATT+AGG	0.452692	2_4:+2151649	Msa0308090:three_prime_UTR
AAATCTGATGCATCAACATT+TGG	0.373327	2_4:-2145659	None:intergenic
AAATGGTCCATCAAATGAGA+AGG	0.597269	2_4:+2149125	Msa0308090:CDS
AAATTCTGTAAAATCCGATG+TGG	0.620683	2_4:+2146056	Msa0308090:CDS
AACAGGAATGCCACCAGCAG+CGG	0.571896	2_4:-2141760	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTAACCTAAGAATGATAGAG+AGG	+	chr2_4:2140870-2140889	Msa0308090:five_prime_UTR	30.0%
TCAATTTCAATTTCAACAGG+CGG	-	chr2_4:2141270-2141289	None:intergenic	30.0%
AATTGAAAAGGAACCTGAAT+CGG	+	chr2_4:2141284-2141303	Msa0308090:CDS	30.0%
TTAACATCATCTTGATCCAT+CGG	-	chr2_4:2141390-2141409	None:intergenic	30.0%
TGATGTTAAATTCGACATAG+AGG	+	chr2_4:2141401-2141420	Msa0308090:CDS	30.0%
GAAGAAACTAACCTTAAACT+GGG	-	chr2_4:2141838-2141857	None:intergenic	30.0%
TGAAGAAACTAACCTTAAAC+TGG	-	chr2_4:2141839-2141858	None:intergenic	30.0%
TGAATTGAAGTGTATATGCT+TGG	+	chr2_4:2141897-2141916	Msa0308090:intron	30.0%
AACAAGTTTGAAGAGCTAAA+TGG	+	chr2_4:2141990-2142009	Msa0308090:intron	30.0%
AGAGGTTTAATCCAATCTTA+GGG	-	chr2_4:2142054-2142073	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	2140824	2151699	2140824	ID=Msa0308090;Name=Msa0308090
chr2_4	mRNA	2140824	2151699	2140824	ID=Msa0308090-mRNA-1;Parent=Msa0308090;Name=Msa0308090-mRNA-1;_AED=0.12;_eAED=0.12;_QI=233\|1\|1\|1\|1\|1\|9\|674\|1340
chr2_4	exon	2140824	2141845	2140824	ID=Msa0308090-mRNA-1:exon:495;Parent=Msa0308090-mRNA-1
chr2_4	exon	2144331	2144578	2144331	ID=Msa0308090-mRNA-1:exon:496;Parent=Msa0308090-mRNA-1
chr2_4	exon	2145607	2145733	2145607	ID=Msa0308090-mRNA-1:exon:497;Parent=Msa0308090-mRNA-1
chr2_4	exon	2145812	2145880	2145812	ID=Msa0308090-mRNA-1:exon:498;Parent=Msa0308090-mRNA-1
chr2_4	exon	2145985	2146125	2145985	ID=Msa0308090-mRNA-1:exon:499;Parent=Msa0308090-mRNA-1
chr2_4	exon	2146288	2146389	2146288	ID=Msa0308090-mRNA-1:exon:500;Parent=Msa0308090-mRNA-1
chr2_4	exon	2146496	2146842	2146496	ID=Msa0308090-mRNA-1:exon:501;Parent=Msa0308090-mRNA-1
chr2_4	exon	2147505	2149146	2147505	ID=Msa0308090-mRNA-1:exon:502;Parent=Msa0308090-mRNA-1
chr2_4	exon	2150468	2151699	2150468	ID=Msa0308090-mRNA-1:exon:503;Parent=Msa0308090-mRNA-1
chr2_4	five_prime_UTR	2140824	2141056	2140824	ID=Msa0308090-mRNA-1:five_prime_utr;Parent=Msa0308090-mRNA-1
chr2_4	CDS	2141057	2141845	2141057	ID=Msa0308090-mRNA-1:cds;Parent=Msa0308090-mRNA-1
chr2_4	CDS	2144331	2144578	2144331	ID=Msa0308090-mRNA-1:cds;Parent=Msa0308090-mRNA-1
chr2_4	CDS	2145607	2145733	2145607	ID=Msa0308090-mRNA-1:cds;Parent=Msa0308090-mRNA-1
chr2_4	CDS	2145812	2145880	2145812	ID=Msa0308090-mRNA-1:cds;Parent=Msa0308090-mRNA-1
chr2_4	CDS	2145985	2146125	2145985	ID=Msa0308090-mRNA-1:cds;Parent=Msa0308090-mRNA-1
chr2_4	CDS	2146288	2146389	2146288	ID=Msa0308090-mRNA-1:cds;Parent=Msa0308090-mRNA-1
chr2_4	CDS	2146496	2146842	2146496	ID=Msa0308090-mRNA-1:cds;Parent=Msa0308090-mRNA-1
chr2_4	CDS	2147505	2149146	2147505	ID=Msa0308090-mRNA-1:cds;Parent=Msa0308090-mRNA-1
chr2_4	CDS	2150468	2151025	2150468	ID=Msa0308090-mRNA-1:cds;Parent=Msa0308090-mRNA-1
chr2_4	three_prime_UTR	2151026	2151699	2151026	ID=Msa0308090-mRNA-1:three_prime_utr;Parent=Msa0308090-mRNA-1

Gene Sequence

>Msa0308090

ATGGACGACGACGACGAATTCGGAGATTTATACACCGATGTTCTCCGTCCTTTTGCCACAGAATCAACACCCCCCTCTTCTGTTATTCACACCTCCCCTCCTCCACCCCCTTCCATCGATCTCAATCAGATCCCCTGCGCCACATCCAACTCTATCCACGATACACCTCATCAAATCGATCCTCCTGAAACCGCCCCAACACAAGATGACCCGCCTGTTGAAATTGAAATTGAAAAGGAACCTGAATCGGCCGACGGCCTTAGGGTTCTTCTTGAACCGCCGGATTCGAAACCGGTCGCGGTTGAGCCGCCTGTCGTTGAAGGCAACGATCCGATGGATCAAGATGATGTTAAATTCGACATAGAGGAAGAGAACGAAGAAGGTGGAGGCACAGAGCCGCTGATTCCGGGATTATCTGGAGGAGGTGGTGGTGGTGGTGGGAATGATGATGATTGGGACAGTGACAGTGATGATGATTTACAGATAGTGTTGAATGATGACAATCACATGGCCATGGCGATGGAAAAAGGTGGGGTTGTGGGTGAGGATGACGACGAAGATGATGATGAAGATGGTGGCCTTGTCATTGTAGCTGGTGAGCCTAATCAGGGTTTGGAAGAGCAAGAGTGGGGGGAGAGTGCCAATGTTCCGGTGGATGGTGAGAGAAAGGATGCCGTGGAACCGGGGAAGGCAGTCGCGGGTCCCGCTGCTGGTGGCATTCCTGTTGTTCCTAAAGTTGGTTATGGTAGTCATGTTCATGGGTATCATCCATTTCATTCCCAGTTTAAGTATATTAGGCCTGGTGCGACAACAATACCCGGAGCTCCTGGTGCTGCTCAAGGAGGTCCTCCTGGTCAGATTCGTCCACTTGCTAACATGATTGGTCGGGGTAGAGGAGATTGGAGACCACCTGGAATAAAAGGAGCTATTGGTATGCAAAAAGGTTTTCATGCGGGTCCTGGACTACCTAGTTGGGGCAACAATGCTGCAGGGCGGGGTTTTGGTGGTGGATTGGAATTCACTCTTCCTTCTCACAAAACTATATTTGACGTTGATATTGAGAGTTTTGAGGAGAAATTGTGGAAATATCCAAATGTTGATGCATCAGATTTTTTCAACTTCGGTTTGAATGAAGAGACCTGGAAAGATTATTGCAAACAGCTGGAGCAACTACGCCTGGAGTCTACAATGCAAAGCAAGATCCGTGTTTACGAGAGTGGTCGAACAGAGCATGATTATGATCCAGATTTGCCCCCTGAATTGGCTGCAGCTACTGGTTTACACGACGGTGCTGTTGAAAATGCAAATTCTGTAAAATCCGATGTGGGACAAAGTGATGTTATGAAAGGTTCTGGACGCATGCGACCGCCGATACCAACTGGTAGAGCAATACAGGTGGAAGGTGGCTATGGAGAACGTCTTCCTACCATTGATACCCGTCCTCCTCGATTGCGTGATTCAGATGCAATAATTGAGATTGTTTTACAGGGTGCCGAAGATGATGATTCCTCTGCGGGAGTAGGTGTCCAAGATCAATCAGAGGATGGAGAACCCCAGAGGGAGAGTTTTAGAGAAGACCTTGAAGCTGGAGATGAACCAAGTTTGGAGCCTGAGTATTCTGATGGTATTCCACAGGATTATAATCGACGAAAGAAAGAGCATGCAGGAAGAAAAATGCCATTTGTGACTTCTGTCTCTTCTAATGTAGCTAATGAAGATGAAAGCTTGTTCGTCGTCCAGGATGAGCCAATTGAATACTCTGGCTCAAGGGGCCAAAATCCCAGGTCTTATGGTGGCAATTCCAGCTCTTCTCAAGAGGAAAGGAAAATGCAAAAAACAGTGCGTAGTCAATCGCCTATTAGTCCTATCCGAAAACTGAATACAGATGACAATAAAAAAGAAGATTCAGTTGAAAGCATGGAAGTCAAAGATACCACACTTTCGTCTTCTCCTGTCATTGAGGATGTAAAGGAGTCCAGTTTGGAGGACAAAGATGGCGAGCTTGAGGATACTGGGACCGCTGATGGAAGTCCTAGATTGGGAAAGAAAGAAATTGATTTAAATGCAGTAGACAAGGTTGATGTCCTCAAGGATGGGATAGATAAGAAACAGAATTTGACATCTCAAGCTGAGCAACCTTTGCTTGATGAGAGTGATGATTGGGAGGACTTAAAAGCTGCCAGAAGCAGCGATAACAGCAAAGCAAGGTCAGCAAGCAGCAGAGATAATCAGAAACGACGAGAGGGTCTTGATGAAGAAGTAGTCCAGGATCCACGATCAACACGTCTGGCTAGCATCAGACAACACCCAGATGAAAATGAGCAGGGATTCTATAGAAGAGAGCATGATGGAAAGCAAGATCCCGAAAGAAATCACATGGTACTTAGAGGTAGAGAGGGATCATACCCTTACAAGGACCGACATCGTAGCTTGGCCCATCAATTGCATACAAATACTGACGGATTTGATAGGCAAAAAGATAGGGACAGTTCTGACATGGATTGGGCAAGGAGAGATGATGACGTCTATAACAGAAAGATTAGAACTAATGAACCTAGAAAGAGGGATAGGGCTAAGCTTCGAGAAAATGAGAGAAACGACAAAGAAGATAGCTTTCACTCTAGAAAGCAGTTGGATAATGGTAGCTACAGGATTCCTTATGAAAAGGATGTTGGGTCAAGAGACTCAAGACACAGGGAAAGAGATGAGGGCGTGAGGGTTAGGTACGAAGCTGTGGAGGATTACCATATCAAGAGGAGAAAGGACGAGGAGTATCTTAGGAGGGAACATATGGACAAAGAAGATATTCCACATGGCTACAGAGAAAATGCTAGTCGGCGTAGACGAGAAAGAGATGAAGTATTGGATCAACGTAAGAGAGATGAAATGCAAAGAAGTAGAGATTACCCTGATGATCAATACACCAATAGGCAGAAAGATGATGCCTGGCTAATGCAGGAGAGGGGCGATAGGCAAAGAGATAGGGAGGAGTGGCATCGGTTGAAACTGTCCCATGATGGACCCCTACCTAAGCGTGAAAGAGAGGAAGGAAGGAGTTCTGGAAGAAGTGTACGAGGGGCTGAAGAAAAAGCATGGGTTGGCCGTGTTAGTGCTAAAGATGAACATAAACTTTCTGAGAAAGATTACCAATCTAGGGAATCAGTTCGACACAATGACCAACTAAAGAGAAGGGATCGGATTCCAGAAGAAAGTTCACATCATAAGGGGCGGGATGATGCTTATGCCCGTGGAAATCAATATACCGCTGAAGAAAGGCGATCTAGGCAGGAAAGGTCAAGTAGTCGTAGTGATCGTGTTGCTAATGCTTCAGATAACCAAAGACTTCACGAGAGGAAACATAAAGAGGGCTCAAGGAAAAGCAAAGAGCGTGAGATTAGTGACCTCAATAGTTTAGGTCTGTCCAAGAAAAGTCTAGAAAATCCAAATGGTCCATCAAATGAGAAGGGCTTGAAAGAATCTGGTGATCAAGAACGTGCTGAGCATGAAATCCCAGGGCATCGCCTGTCCAGGAAACACCAGGACGGCATTTCTTCCGATGATGAACAGCAAGATTCTTACAGAGGACGTTCTAAACTGGAGCGCTGGACAAGCCATAAGGAAAGAGATTTCAGTATCAACAAGTCCTCCTCTTCCTTGAAGTTCAAAGACGTTGATAAGAATAATAATGGTGGGTCTTCTGAAGCTGGGAAACCTGTGGATGAATCTGCTAAAACAGTTGATTTGGATAACCAACAACCCTTGATGCCTGAAGCAAGGGATTCTGTAGACAGGGAGAGCAGGGATGGTGATTCCAAGGAATCAGGGGATCGGCACCTGGACACAGTTGAGAGGCTGAAGAAACGGAGTGAGCGGTTCAAGCTCCCAATGCCAAGTGAAAAAGAAACCCAGGTTATCAAGAAGCTAGAGAGTGAACCTTTGCCTTCTGCCAAAACTGAAAATCCAGTGGAGTCAGAGGTCAAACAAGAGAGACCTCCCAGAAAAAGGAGATGGATCAGTAACTAA

Protein sequence

>Msa0308090

MDDDDEFGDLYTDVLRPFATESTPPSSVIHTSPPPPPSIDLNQIPCATSNSIHDTPHQIDPPETAPTQDDPPVEIEIEKEPESADGLRVLLEPPDSKPVAVEPPVVEGNDPMDQDDVKFDIEEENEEGGGTEPLIPGLSGGGGGGGGNDDDWDSDSDDDLQIVLNDDNHMAMAMEKGGVVGEDDDEDDDEDGGLVIVAGEPNQGLEEQEWGESANVPVDGERKDAVEPGKAVAGPAAGGIPVVPKVGYGSHVHGYHPFHSQFKYIRPGATTIPGAPGAAQGGPPGQIRPLANMIGRGRGDWRPPGIKGAIGMQKGFHAGPGLPSWGNNAAGRGFGGGLEFTLPSHKTIFDVDIESFEEKLWKYPNVDASDFFNFGLNEETWKDYCKQLEQLRLESTMQSKIRVYESGRTEHDYDPDLPPELAAATGLHDGAVENANSVKSDVGQSDVMKGSGRMRPPIPTGRAIQVEGGYGERLPTIDTRPPRLRDSDAIIEIVLQGAEDDDSSAGVGVQDQSEDGEPQRESFREDLEAGDEPSLEPEYSDGIPQDYNRRKKEHAGRKMPFVTSVSSNVANEDESLFVVQDEPIEYSGSRGQNPRSYGGNSSSSQEERKMQKTVRSQSPISPIRKLNTDDNKKEDSVESMEVKDTTLSSSPVIEDVKESSLEDKDGELEDTGTADGSPRLGKKEIDLNAVDKVDVLKDGIDKKQNLTSQAEQPLLDESDDWEDLKAARSSDNSKARSASSRDNQKRREGLDEEVVQDPRSTRLASIRQHPDENEQGFYRREHDGKQDPERNHMVLRGREGSYPYKDRHRSLAHQLHTNTDGFDRQKDRDSSDMDWARRDDDVYNRKIRTNEPRKRDRAKLRENERNDKEDSFHSRKQLDNGSYRIPYEKDVGSRDSRHRERDEGVRVRYEAVEDYHIKRRKDEEYLRREHMDKEDIPHGYRENASRRRRERDEVLDQRKRDEMQRSRDYPDDQYTNRQKDDAWLMQERGDRQRDREEWHRLKLSHDGPLPKREREEGRSSGRSVRGAEEKAWVGRVSAKDEHKLSEKDYQSRESVRHNDQLKRRDRIPEESSHHKGRDDAYARGNQYTAEERRSRQERSSSRSDRVANASDNQRLHERKHKEGSRKSKEREISDLNSLGLSKKSLENPNGPSNEKGLKESGDQERAEHEIPGHRLSRKHQDGISSDDEQQDSYRGRSKLERWTSHKERDFSINKSSSSLKFKDVDKNNNGGSSEAGKPVDESAKTVDLDNQQPLMPEARDSVDRESRDGDSKESGDRHLDTVERLKKRSERFKLPMPSEKETQVIKKLESEPLPSAKTENPVESEVKQERPPRKRRWISN*