AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0611220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0611220 MtrunA17_Chr4g0044551 99.336 1055 7 0 1 1055 1 1055 0.0 2145
Msa0611220 MtrunA17_Chr2g0286611 35.227 88 55 1 28 115 168 253 1.29e-11 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0611220 AT4G34100.2 77.353 1073 221 11 45 1110 48 1105 0.0 1680
Msa0611220 AT4G34100.1 76.887 1073 227 10 45 1110 48 1106 0.0 1668
Msa0611220 AT4G32670.2 30.700 557 349 9 518 1070 337 860 5.54e-76 269
Msa0611220 AT4G32670.2 29.448 326 189 9 44 368 8 293 5.21e-33 138
Msa0611220 AT4G32670.1 30.700 557 349 9 518 1070 337 860 5.54e-76 269
Msa0611220 AT4G32670.1 29.448 326 189 9 44 368 8 293 5.21e-33 138
Msa0611220 AT3G47550.1 33.663 101 57 3 23 119 24 118 1.70e-11 65.9
Msa0611220 AT3G47550.2 33.663 101 57 3 23 119 24 118 2.20e-11 65.9

Find 346 sgRNAs with CRISPR-Local

Find 519 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTATCTGTTGCGGTTTA+TGG 0.101834 4_2:+59338510 Msa0611220:CDS
AGAAGTTTCCTGTTAATTTA+TGG 0.137755 4_2:+59341584 Msa0611220:three_prime_UTR
TTCCTATTAGTTATTGAATT+AGG 0.156552 4_2:+59338110 Msa0611220:CDS
CGATCTTGTTGATTTATATT+TGG 0.156811 4_2:-59341201 None:intergenic
TGCTACACCACTTCCAAATT+TGG 0.159186 4_2:-59339665 None:intergenic
TGCACCTTATAATCTCTTTA+TGG 0.160377 4_2:-59334950 None:intergenic
TGGGCTTCTCTTTGAGCTTT+TGG 0.169577 4_2:+59339856 Msa0611220:CDS
TCTCCAGGCTGCAGGGTCTT+TGG 0.171181 4_2:+59340848 Msa0611220:CDS
TTTAGGCATTTAAGAGAAAT+TGG 0.174412 4_2:+59336435 Msa0611220:CDS
TCCTATTAGTTATTGAATTA+GGG 0.229202 4_2:+59338111 Msa0611220:CDS
CTCCAGGCTGCAGGGTCTTT+GGG 0.231290 4_2:+59340849 Msa0611220:CDS
GACAATGGTAATCAAGAAAA+TGG 0.233183 4_2:+59338884 Msa0611220:CDS
AGAGGAAGGGGAAGAGGAGG+AGG 0.244114 4_2:-59335338 None:intergenic
GCCTTATATTTCTCAAGATA+TGG 0.247700 4_2:+59339948 Msa0611220:CDS
CTTTCATAACATTCTGGATA+TGG 0.251750 4_2:+59336259 Msa0611220:CDS
CACTTAATGCCATGAGTTAT+AGG 0.266226 4_2:-59339449 None:intergenic
TTTGCCATAAAGAGATTATA+AGG 0.276109 4_2:+59334946 Msa0611220:five_prime_UTR
TGTTATCTGTTGCGGTTTAT+GGG 0.282545 4_2:+59338511 Msa0611220:CDS
CGCATCGATCTCCTTTCCTT+TGG 0.285667 4_2:-59335383 None:intergenic
AATCTTTCTGCCCTTCTCAT+TGG 0.294871 4_2:+59337581 Msa0611220:CDS
TCAAATCCCTTCTTCGCTAT+TGG 0.297044 4_2:+59338804 Msa0611220:CDS
ATTCCGGGATTGCCCTTGTT+TGG 0.297562 4_2:-59335120 None:intergenic
CGCCAACTTTCATCCATTAG+AGG 0.297935 4_2:-59340793 None:intergenic
CTTCTTTGAGAGATTACTTT+AGG 0.298635 4_2:+59336418 Msa0611220:CDS
AGGGGAAGAGGAGGAGGGTG+TGG 0.299524 4_2:-59335332 None:intergenic
TTATACCTTTCATAACATTC+TGG 0.304866 4_2:+59336253 Msa0611220:CDS
ATCCGCATTGCAAGTTTAAC+TGG 0.309471 4_2:-59338561 None:intergenic
TTCCGGGATTGCCCTTGTTT+GGG 0.321094 4_2:-59335119 None:intergenic
TTTGGTTGAAAATGCATTTA+CGG 0.323117 4_2:+59336767 Msa0611220:CDS
TAAACAGGTGAGAAGGAAAA+TGG 0.323156 4_2:-59336108 None:intergenic
TTTGAGAGGGTGAGAGATGA+TGG 0.325844 4_2:+59340823 Msa0611220:CDS
TTCTTCTGCTGGTCATTGCT+TGG 0.327923 4_2:+59339342 Msa0611220:CDS
AGCAAGCTCATTGGCTCATT+GGG 0.328335 4_2:+59338235 Msa0611220:CDS
GTGATCTGGACTGCTGTTGC+TGG 0.328384 4_2:+59339588 Msa0611220:CDS
AGAGGAAGAGGAAGGGGAAG+AGG 0.329013 4_2:-59335344 None:intergenic
GTCAATAGTTTCATTATGAT+TGG 0.330957 4_2:-59340892 None:intergenic
CAAGCTAATCGTAATGTTAA+TGG 0.332727 4_2:+59336528 Msa0611220:CDS
GTTTGCACCATACAGATGTT+TGG 0.342704 4_2:+59338167 Msa0611220:CDS
ATCTTTCTGCCCTTCTCATT+GGG 0.345449 4_2:+59337582 Msa0611220:CDS
TAAATAATTTAGCTAATAGT+AGG 0.345872 4_2:+59341470 Msa0611220:three_prime_UTR
CCCCTAATTCAATAACTAAT+AGG 0.352335 4_2:-59338112 None:intergenic
TAGCAAGCTCATTGGCTCAT+TGG 0.354155 4_2:+59338234 Msa0611220:CDS
GTTATGTGTACCTTATGTTT+TGG 0.354946 4_2:+59340918 Msa0611220:CDS
GAGGGTGTGGTGGCGGCGAT+TGG 0.359481 4_2:-59335319 None:intergenic
GTGCCAAGAGATTTCATGTC+TGG 0.360708 4_2:+59341043 Msa0611220:CDS
TTGTCATCCCAGTGCTGATT+GGG 0.361144 4_2:+59339837 Msa0611220:CDS
TCCATATCTTGAGAAATATA+AGG 0.361508 4_2:-59339949 None:intergenic
CTCTTGAAAGGAGGGTCAAT+TGG 0.362634 4_2:+59337861 Msa0611220:CDS
AGTATCCTTCCCAGTGATAT+TGG 0.364976 4_2:-59339404 None:intergenic
TCACGGAATGGATTATAGTT+TGG 0.365748 4_2:-59338447 None:intergenic
TCATTGGCTCATTGGGTTGT+AGG 0.365816 4_2:+59338242 Msa0611220:CDS
TGCAGGGTCTTTGGGTCCTA+CGG 0.366377 4_2:+59340857 Msa0611220:CDS
CGCTATTGGTTTACAGCAGT+TGG 0.367808 4_2:+59338818 Msa0611220:CDS
GGAAGAGGAGGAGGGTGTGG+TGG 0.368546 4_2:-59335329 None:intergenic
CCAACGCACCATAAATTAAC+AGG 0.368603 4_2:-59341592 None:intergenic
AGACAATTCCATCTCTCTTC+AGG 0.368907 4_2:+59338039 Msa0611220:CDS
TTAGGCATTTAAGAGAAATT+GGG 0.368924 4_2:+59336436 Msa0611220:CDS
GAGGGTCAATTGGAACTTCC+AGG 0.369709 4_2:+59337871 Msa0611220:CDS
GGTAATCAAGAAAATGGAAA+TGG 0.370594 4_2:+59338890 Msa0611220:CDS
GGTGCAGCACAAGGAGTTGC+GGG 0.371201 4_2:+59336573 Msa0611220:CDS
CAGGGTATGGTTCCATTTGC+TGG 0.374030 4_2:+59338965 Msa0611220:CDS
CTTTATCAAGACTGGGCATT+GGG 0.374454 4_2:+59339926 Msa0611220:CDS
CGAGCCACCACCCACACATC+AGG 0.376387 4_2:-59338142 None:intergenic
GTAATCAAGAAAATGGAAAT+GGG 0.378500 4_2:+59338891 Msa0611220:CDS
ACAGCAGTTGGTTGGGCGCT+TGG 0.379216 4_2:+59338830 Msa0611220:CDS
CGAGGAACTCACTCAGAATC+AGG 0.379699 4_2:-59339049 None:intergenic
AAGCATGTTAGCTGGAATTT+CGG 0.383364 4_2:-59338726 None:intergenic
ACAAGCAGGGGTGCACGATC+AGG 0.384312 4_2:+59338946 Msa0611220:CDS
GATCTGTATGCCTTCATCAT+TGG 0.384697 4_2:+59339558 Msa0611220:intron
TGATGGTTTCTCCAGGCTGC+AGG 0.385567 4_2:+59340840 Msa0611220:CDS
TTTGTACTTCCTTCGGGATC+CGG 0.386215 4_2:+59338419 Msa0611220:CDS
AGAGGAGGAGGGTGTGGTGG+CGG 0.387488 4_2:-59335326 None:intergenic
TGGTAGCGATGCGGTGTTAT+CGG 0.388548 4_2:+59337644 Msa0611220:CDS
TAATTCTTCATTATCTATCA+TGG 0.391548 4_2:+59337610 Msa0611220:CDS
AGAGGTGTGTTTCCAGCACT+TGG 0.391758 4_2:+59340943 Msa0611220:CDS
TATTCCTCCTTTATCAAGAC+TGG 0.396982 4_2:+59339918 Msa0611220:CDS
TGAACAGATGTTTGATGGTC+TGG 0.398397 4_2:+59336677 Msa0611220:CDS
ATATTTGTCAGCCTTCTTAG+AGG 0.400759 4_2:+59338290 Msa0611220:CDS
TTTGCACCATACAGATGTTT+GGG 0.402255 4_2:+59338168 Msa0611220:CDS
TCATTGGAAGTTATGTGATC+TGG 0.403756 4_2:+59339574 Msa0611220:CDS
TGGGAGTTTGATTGTTATGC+TGG 0.404265 4_2:+59338530 Msa0611220:CDS
TCTTGATAAAGGAGGAATAC+TGG 0.405833 4_2:-59339914 None:intergenic
ACTTCGCATTGTTCTTCTGC+TGG 0.406936 4_2:+59339331 Msa0611220:CDS
GTCTATCGATTTGCATGGTT+GGG 0.407664 4_2:+59340991 Msa0611220:CDS
ATTCTGACTGATTGCCTCCA+TGG 0.407876 4_2:+59336351 Msa0611220:CDS
GGAAGAGGAAGGGGAAGAGG+AGG 0.413121 4_2:-59335341 None:intergenic
CATTGGCTCATTGGGTTGTA+GGG 0.414825 4_2:+59338243 Msa0611220:CDS
TCATCCACCGGAACTCTCAT+TGG 0.418256 4_2:-59339887 None:intergenic
TGGTTGGTATATTTATGTTA+TGG 0.419305 4_2:-59335012 None:intergenic
GTTCATTGATTAGGTTATGT+TGG 0.421290 4_2:+59340759 Msa0611220:intron
TTCTCCTTTAGCAAGCTCAT+TGG 0.424882 4_2:+59338226 Msa0611220:CDS
TTTGTCATCCCAGTGCTGAT+TGG 0.425479 4_2:+59339836 Msa0611220:CDS
GAATTGTTTGTCAGGTAGGA+AGG 0.426695 4_2:+59341278 Msa0611220:three_prime_UTR
TTCAAATCATCGCCAGCAAA+TGG 0.427675 4_2:-59338977 None:intergenic
CATGTTGAACAGATGTTTGA+TGG 0.428416 4_2:+59336672 Msa0611220:CDS
TCTAGGAAGTGTTCAGTCTC+TGG 0.429699 4_2:+59341309 Msa0611220:three_prime_UTR
AATGAAGCTGCAACTTCTAC+AGG 0.432112 4_2:+59341153 Msa0611220:CDS
TTGGTTTACAGCAGTTGGTT+GGG 0.435463 4_2:+59338823 Msa0611220:CDS
TCTCAAGATATGGACTAGAT+TGG 0.436470 4_2:+59339958 Msa0611220:CDS
GGAGGGTTGTGATTTGTGTT+TGG 0.440008 4_2:-59335032 None:intergenic
CTGTAAACCAATAGCGAAGA+AGG 0.440125 4_2:-59338811 None:intergenic
CGTGATGACCGGTATCTGAT+TGG 0.441015 4_2:+59341090 Msa0611220:CDS
AGTTATGGTAGGTTATGTTA+TGG 0.442329 4_2:-59334981 None:intergenic
ATTGGTTTACAGCAGTTGGT+TGG 0.442356 4_2:+59338822 Msa0611220:CDS
AGACGAAGAGGAAGAGGAAG+GGG 0.442959 4_2:-59335350 None:intergenic
CCAATGCCCAGTCTTGATAA+AGG 0.443572 4_2:-59339925 None:intergenic
GGAGCATTCTCTGCATAAAC+AGG 0.443888 4_2:-59336123 None:intergenic
CGACTCGGTCGCCGCGGACT+CGG 0.445836 4_2:+59335252 Msa0611220:five_prime_UTR
TCTTGATTACCATTGTCATC+AGG 0.446607 4_2:-59338878 None:intergenic
AGAATGCATGCTAAGATAGA+TGG 0.446821 4_2:+59341548 Msa0611220:three_prime_UTR
GGACCACATGATGCCTCTAA+TGG 0.447991 4_2:+59340780 Msa0611220:CDS
TCCTTACCCATATAGACAAA+AGG 0.453024 4_2:-59339707 None:intergenic
TGTCTATCGATTTGCATGGT+TGG 0.454226 4_2:+59340990 Msa0611220:CDS
GGTTGTGATTTGTGTTTGGT+TGG 0.455642 4_2:-59335028 None:intergenic
AGTAGTAACATCAGAAATCC+TGG 0.457280 4_2:-59337889 None:intergenic
GGGCAGGTCAAGTAATTAGA+AGG 0.458120 4_2:+59336595 Msa0611220:CDS
TGTTCAGTCTCTGGCTGGCA+TGG 0.460400 4_2:+59341318 Msa0611220:three_prime_UTR
CCTTTATCAAGACTGGGCAT+TGG 0.460541 4_2:+59339925 Msa0611220:CDS
ATCCCAAACAAGGGCAATCC+CGG 0.460858 4_2:+59335117 Msa0611220:five_prime_UTR
AAATGGGGAGCGAGGTAGGC+AGG 0.461323 4_2:+59338907 Msa0611220:CDS
ACTTGTTGGCATGCAGGGTC+CGG 0.462784 4_2:+59336737 Msa0611220:CDS
GATATTAGAGAGAGAAAGAG+AGG 0.463672 4_2:-59335166 None:intergenic
GATTTCTGATGTTACTACTT+TGG 0.467866 4_2:+59337893 Msa0611220:CDS
AAGAGAGAGAAAGAGAGAAA+TGG 0.468233 4_2:-59335192 None:intergenic
GGGTATTTCCCCTGATGTGT+GGG 0.468376 4_2:+59338132 Msa0611220:CDS
AGGATGTTTGCCGTATTTGT+CGG 0.471836 4_2:+59335473 Msa0611220:CDS
GTCTGAGTGAATTGTTTGTC+AGG 0.472018 4_2:+59341270 Msa0611220:exon
TCCAGCACTTGGGTACCCAT+TGG 0.472600 4_2:+59340954 Msa0611220:CDS
AGAGAGAAAGAGAGAAATGG+TGG 0.472760 4_2:-59335189 None:intergenic
TGATGAACTTGTTGGCATGC+AGG 0.474170 4_2:+59336731 Msa0611220:CDS
CGGGTTGCTAGGAGGCCTGC+TGG 0.475558 4_2:+59336504 Msa0611220:CDS
AAGTGGACAGAAATGGTGCC+CGG 0.477000 4_2:+59336484 Msa0611220:CDS
GCAGGGTCTTTGGGTCCTAC+GGG 0.477110 4_2:+59340858 Msa0611220:CDS
ACACCTCTGGCCAAAACATA+AGG 0.478364 4_2:-59340928 None:intergenic
ATTGAGGCACGTAAATCAAC+AGG 0.478520 4_2:+59341245 Msa0611220:CDS
GGATTATAGTTTGGATCAGC+CGG 0.479913 4_2:-59338438 None:intergenic
TGCAACTTCTACAGGAGTGC+AGG 0.481879 4_2:+59341161 Msa0611220:CDS
ATCAAGATTGTCTCCTTCAG+TGG 0.482343 4_2:+59335563 Msa0611220:CDS
GCGTGGAGACGAAGAGGAAG+AGG 0.483146 4_2:-59335356 None:intergenic
AATGATTCAAGAATAACCTC+TGG 0.484324 4_2:-59336314 None:intergenic
AATGTTAATGGTGATGCAAA+TGG 0.485414 4_2:+59336540 Msa0611220:CDS
TCAAGAGTTTGTGGTGGGAA+TGG 0.485656 4_2:+59336161 Msa0611220:CDS
GTTATGGACGATGATAGTTA+TGG 0.485784 4_2:-59334996 None:intergenic
GTACCCTTTGATGAACTTGT+TGG 0.487335 4_2:+59336723 Msa0611220:CDS
GAAGATGAAGTGGACAGAAA+TGG 0.488415 4_2:+59336477 Msa0611220:CDS
GGTAGTTGTACCAATATCAC+TGG 0.491978 4_2:+59339394 Msa0611220:CDS
CCTGTTAATTTATGGTGCGT+TGG 0.493310 4_2:+59341592 Msa0611220:three_prime_UTR
CATTGTGCCAATGAGAGTTC+CGG 0.493623 4_2:+59339880 Msa0611220:CDS
AGCACTTGGGTACCCATTGG+TGG 0.494455 4_2:+59340957 Msa0611220:CDS
GCGTTAATTCGCTACACAAA+GGG 0.494571 4_2:+59337969 Msa0611220:CDS
TCGTCTCCACGCGGTTCCAA+AGG 0.495243 4_2:+59335367 Msa0611220:CDS
CCCACCACAAACTCTTGAAA+AGG 0.496004 4_2:-59336156 None:intergenic
GAAATGGTGCCCGGGTTGCT+AGG 0.496191 4_2:+59336493 Msa0611220:CDS
TTACCATTGTCATCAGGTCT+AGG 0.496643 4_2:-59338872 None:intergenic
GATGTTACTACTTTGGCAGT+TGG 0.498733 4_2:+59337900 Msa0611220:CDS
CTCCGAAGTTATGCAACCTC+CGG 0.500070 4_2:-59341113 None:intergenic
TTACGATTAGCTTGTCCAGC+AGG 0.500342 4_2:-59336519 None:intergenic
AAGAGAAGCCCAATCAGCAC+TGG 0.501798 4_2:-59339845 None:intergenic
TGTTTGTCAGGTAGGAAGGA+AGG 0.502700 4_2:+59341282 Msa0611220:three_prime_UTR
ATAAAGAGATTATAAGGTGC+AGG 0.502900 4_2:+59334952 Msa0611220:five_prime_UTR
TTAAAATGCTCAATAGCAAA+TGG 0.504195 4_2:-59338767 None:intergenic
GAGGAAGGGGAAGAGGAGGA+GGG 0.505373 4_2:-59335337 None:intergenic
GACCCAAAGACCCTGCAGCC+TGG 0.507054 4_2:-59340851 None:intergenic
CAGCAGGCCTCCTAGCAACC+CGG 0.507062 4_2:-59336503 None:intergenic
TGAAAGAGAAGCATGTTAGC+TGG 0.507863 4_2:-59338734 None:intergenic
CAAGATCGTGATGCAGATGT+TGG 0.510770 4_2:+59341216 Msa0611220:CDS
ACCAATGGGTACCCAAGTGC+TGG 0.511099 4_2:-59340955 None:intergenic
CTGAAAATGTTGCTGCGCGA+TGG 0.511230 4_2:+59336622 Msa0611220:CDS
CTGTGCACAAACATGCTCGC+AGG 0.512215 4_2:+59338484 Msa0611220:CDS
GGTCGCCGCGGACTCGGCGA+TGG 0.514249 4_2:+59335258 Msa0611220:exon
CAGATGTTGGACTTCGATTG+AGG 0.514689 4_2:+59341229 Msa0611220:CDS
CACATAACTTCCAATGATGA+AGG 0.514754 4_2:-59339568 None:intergenic
TATTTGTCAGCCTTCTTAGA+GGG 0.515008 4_2:+59338291 Msa0611220:CDS
CCTTGTCTTCAACTCTGCCC+TGG 0.515034 4_2:+59339373 Msa0611220:CDS
GATGAACTTGTTGGCATGCA+GGG 0.519507 4_2:+59336732 Msa0611220:CDS
TTCCCCTGATGTGTGGGTGG+TGG 0.520538 4_2:+59338138 Msa0611220:CDS
TCTTGAAAAGGCAACCTAGC+AGG 0.521442 4_2:-59336144 None:intergenic
AGTTATAGGAAGACGAGGAA+TGG 0.522267 4_2:-59339435 None:intergenic
CAATCGAGCAAATTAGAAAA+CGG 0.522531 4_2:+59339622 Msa0611220:CDS
CCTCGTCTTCCTATAACTCA+TGG 0.525560 4_2:+59339440 Msa0611220:CDS
CCTATTAGTTATTGAATTAG+GGG 0.526001 4_2:+59338112 Msa0611220:CDS
CACCAGGGTTCCGACAAATA+CGG 0.526229 4_2:-59335483 None:intergenic
ATATTAGAGAGAGAAAGAGA+GGG 0.526522 4_2:-59335165 None:intergenic
AGGAAATTACCCCTCTAAGA+AGG 0.526747 4_2:-59338301 None:intergenic
AGACAATGCTTGCAGAAAGC+AGG 0.527346 4_2:-59336377 None:intergenic
TGTCTTCCCAAACATCTGTA+TGG 0.527439 4_2:-59338174 None:intergenic
GTTTCAGATGATCTCTTGAA+AGG 0.529271 4_2:+59337849 Msa0611220:CDS
AGAGTCACTAATGCAGATGC+TGG 0.529500 4_2:+59339001 Msa0611220:CDS
GAGACGAAGAGGAAGAGGAA+GGG 0.530191 4_2:-59335351 None:intergenic
TCAACTGCTACTCAAGAAAG+TGG 0.531342 4_2:+59337747 Msa0611220:CDS
GTGATATTGGTACAACTACC+AGG 0.531686 4_2:-59339391 None:intergenic
CGAGTCCGCGGCGACCGAGT+CGG 0.531716 4_2:-59335251 None:intergenic
GATGGTTTCTCCAGGCTGCA+GGG 0.531938 4_2:+59340841 Msa0611220:CDS
GGAAGTGTTCAGTCTCTGGC+TGG 0.536458 4_2:+59341313 Msa0611220:three_prime_UTR
AGGGGTGCACGATCAGGGTA+TGG 0.536718 4_2:+59338952 Msa0611220:CDS
ATGCAGAGAATGCTCCTGCT+AGG 0.536815 4_2:+59336130 Msa0611220:CDS
GGGAGCGAGGTAGGCAGGAA+AGG 0.540221 4_2:+59338912 Msa0611220:CDS
ACAGCAGAATTGACCACCAA+TGG 0.542480 4_2:-59340970 None:intergenic
AGAAAGAGAGGGGTTGCCGT+AGG 0.543817 4_2:-59335154 None:intergenic
TGAGAGATGATGGTTTCTCC+AGG 0.544493 4_2:+59340833 Msa0611220:CDS
TATTTCCCCTGATGTGTGGG+TGG 0.544656 4_2:+59338135 Msa0611220:CDS
GAACCAGACATGAAATCTCT+TGG 0.545546 4_2:-59341046 None:intergenic
TGTTGAACCAAATTTGGAAG+TGG 0.546731 4_2:+59339658 Msa0611220:CDS
ATTGGAGTTCCGTCGAGAGA+AGG 0.548088 4_2:-59335301 None:intergenic
GGGGTATTTCCCCTGATGTG+TGG 0.548809 4_2:+59338131 Msa0611220:CDS
CTGCGAGCATGTTTGTGCAC+AGG 0.549091 4_2:-59338483 None:intergenic
ATGGAAATGGGGAGCGAGGT+AGG 0.550188 4_2:+59338903 Msa0611220:CDS
AACGGATTATCAGCATCACC+AGG 0.550685 4_2:-59335499 None:intergenic
CAGATGATCTCTTGAAAGGA+GGG 0.550858 4_2:+59337853 Msa0611220:CDS
ACGTGTGTTGGTGACGTATA+TGG 0.551034 4_2:-59335077 None:intergenic
TGAGCCAATGAGCTTGCTAA+AGG 0.551517 4_2:-59338230 None:intergenic
GAAAGAGAGGGGTTGCCGTA+GGG 0.551556 4_2:-59335153 None:intergenic
GGCCGGAGGTTGCATAACTT+CGG 0.552041 4_2:+59341111 Msa0611220:CDS
CTGCTGTCTATCGATTTGCA+TGG 0.552900 4_2:+59340986 Msa0611220:CDS
TTGGCGAGTAAAGTTTGAGA+GGG 0.553067 4_2:+59340810 Msa0611220:CDS
TGGTGCAGCACAAGGAGTTG+CGG 0.553517 4_2:+59336572 Msa0611220:CDS
TAGGCATTTAAGAGAAATTG+GGG 0.553875 4_2:+59336437 Msa0611220:CDS
CAGCAGAATTGACCACCAAT+GGG 0.553975 4_2:-59340969 None:intergenic
AGATTATAAGGTGCAGGCAA+TGG 0.554650 4_2:+59334958 Msa0611220:five_prime_UTR
GAGTGAATTGTTTGTCAGGT+AGG 0.555543 4_2:+59341274 Msa0611220:exon
CATGCCAACAAGTTCATCAA+AGG 0.555700 4_2:-59336727 None:intergenic
GGAGACGAAGAGGAAGAGGA+AGG 0.556513 4_2:-59335352 None:intergenic
TAAAATCTTCCTGCAGTCAA+AGG 0.556613 4_2:-59337996 None:intergenic
GTAGGAAGGAAGGAATCTCT+AGG 0.557679 4_2:+59341292 Msa0611220:three_prime_UTR
ACAATTCAATTCGTGATGAC+CGG 0.559314 4_2:+59341079 Msa0611220:CDS
CCTTACCCATATAGACAAAA+GGG 0.559557 4_2:-59339706 None:intergenic
AAGTGCTGGAAACACACCTC+TGG 0.559718 4_2:-59340941 None:intergenic
CTCTGCATAAACAGGTGAGA+AGG 0.560051 4_2:-59336115 None:intergenic
CACTAATGCAGATGCTGGAG+AGG 0.562098 4_2:+59339006 Msa0611220:CDS
GAAAGAGAAGTGTCTGTAGG+TGG 0.563881 4_2:-59337675 None:intergenic
CCAGCTTACAATATTTCAAG+TGG 0.564399 4_2:-59338600 None:intergenic
ATTCTTGAATCATTTATCAA+CGG 0.564982 4_2:+59336323 Msa0611220:CDS
TCATAACATTCTGGATATGG+AGG 0.565352 4_2:+59336262 Msa0611220:CDS
GAGGTGTGTTTCCAGCACTT+GGG 0.565419 4_2:+59340944 Msa0611220:CDS
AGGTTACAGATAGTACAAGC+AGG 0.566388 4_2:+59338932 Msa0611220:CDS
CGGTATCCGTGCGCGTGTAG+CGG 0.566435 4_2:+59335523 Msa0611220:CDS
TGCCGTATTTGTCGGAACCC+TGG 0.569453 4_2:+59335481 Msa0611220:CDS
TATTAGAGAGAGAAAGAGAG+GGG 0.571066 4_2:-59335164 None:intergenic
TCAGATGATCTCTTGAAAGG+AGG 0.571864 4_2:+59337852 Msa0611220:CDS
CGTAATATAAATCCCAAACA+AGG 0.573064 4_2:+59335107 Msa0611220:five_prime_UTR
GTCCGCGGCGACCGAGTCGG+TGG 0.573463 4_2:-59335248 None:intergenic
AAGGGTGAACCTTTGACTGC+AGG 0.575135 4_2:+59337987 Msa0611220:CDS
ATTCCTCCTTTATCAAGACT+GGG 0.575230 4_2:+59339919 Msa0611220:CDS
ACTCAAGAAAGTGGATCAGT+TGG 0.575644 4_2:+59337756 Msa0611220:CDS
ACCTCCGGCCAATCAGATAC+CGG 0.575902 4_2:-59341098 None:intergenic
CCAGGGCAGAGTTGAAGACA+AGG 0.576280 4_2:-59339373 None:intergenic
TTAGCTGGAATTTCGGTGAA+GGG 0.577394 4_2:-59338719 None:intergenic
GAAGATGCTGGTGCAGCACA+AGG 0.577486 4_2:+59336564 Msa0611220:CDS
TGAAAATGTTGCTGCGCGAT+GGG 0.578626 4_2:+59336623 Msa0611220:CDS
ATAGATAGAGTATTGCATAC+AGG 0.579081 4_2:-59341363 None:intergenic
TGACGACGATGAAGATGAAG+AGG 0.579648 4_2:+59335453 Msa0611220:CDS
ATGACCGGTATCTGATTGGC+CGG 0.580036 4_2:+59341094 Msa0611220:CDS
CAAGCAGGGGTGCACGATCA+GGG 0.582414 4_2:+59338947 Msa0611220:CDS
CAATGCTTAGTAAAGAGTTG+AGG 0.583399 4_2:+59341673 Msa0611220:three_prime_UTR
GTTGGCGAGTAAAGTTTGAG+AGG 0.584638 4_2:+59340809 Msa0611220:CDS
ACTCATGGCATTAAGTGCAA+TGG 0.584649 4_2:+59339455 Msa0611220:CDS
GTGCAGCACAAGGAGTTGCG+GGG 0.585709 4_2:+59336574 Msa0611220:CDS
ATGATTCAAGAATAACCTCT+GGG 0.587470 4_2:-59336313 None:intergenic
TGGTGACGTATATGGTCATG+TGG 0.588278 4_2:-59335069 None:intergenic
GTGATGCTGATAATCCGTTA+CGG 0.589189 4_2:+59335503 Msa0611220:CDS
AAAGGAGATCGATGCGGATG+CGG 0.589476 4_2:+59335390 Msa0611220:CDS
CATATCCAGAATGTTATGAA+AGG 0.590021 4_2:-59336258 None:intergenic
TGCGGATAGAGAAGATGAAG+TGG 0.590427 4_2:+59336467 Msa0611220:CDS
TCCACGCGGTTCCAAAGGAA+AGG 0.591443 4_2:+59335372 Msa0611220:CDS
GAGAGAAAGAGAGAAATGGT+GGG 0.592358 4_2:-59335188 None:intergenic
AGTTAAACTTGCAATGCGGA+TGG 0.593883 4_2:+59338563 Msa0611220:CDS
AAGAACAATGCGAAGTGCAA+AGG 0.595024 4_2:-59339324 None:intergenic
AGCAGGCCTCCTAGCAACCC+GGG 0.595777 4_2:-59336502 None:intergenic
GATGCAAGCAGCACGTCTCG+AGG 0.597618 4_2:+59336647 Msa0611220:CDS
ATGCCAACAAGTTCATCAAA+GGG 0.597789 4_2:-59336726 None:intergenic
TGCGTTAATTCGCTACACAA+AGG 0.598094 4_2:+59337968 Msa0611220:CDS
TGCTATGATTAAGCCACTGA+AGG 0.598864 4_2:-59335576 None:intergenic
TGCCTCTAATGGATGAAAGT+TGG 0.598881 4_2:+59340791 Msa0611220:CDS
GAACCACCGCCTTCTCTCGA+CGG 0.602943 4_2:+59335292 Msa0611220:CDS
GTTAGCTGGAATTTCGGTGA+AGG 0.603257 4_2:-59338720 None:intergenic
TTTGATGACCATGGTGAAGG+TGG 0.603390 4_2:+59338085 Msa0611220:CDS
AATTATGCGACCCAATGAGA+AGG 0.603861 4_2:-59337592 None:intergenic
GCAGAAAGATTACAACTCCA+AGG 0.604007 4_2:-59337569 None:intergenic
TGGACGATGATAGTTATGGT+AGG 0.604861 4_2:-59334992 None:intergenic
ATTTGTCAGCCTTCTTAGAG+GGG 0.607588 4_2:+59338292 Msa0611220:CDS
GAGCCACCACCCACACATCA+GGG 0.608319 4_2:-59338141 None:intergenic
ATTATGCGACCCAATGAGAA+GGG 0.611869 4_2:-59337591 None:intergenic
GATCTCCATCGCCGAGTCCG+CGG 0.613410 4_2:-59335263 None:intergenic
GATGGTCTGGATGACGCTGA+TGG 0.613749 4_2:+59336690 Msa0611220:CDS
TGTGCACAAACATGCTCGCA+GGG 0.613764 4_2:+59338485 Msa0611220:CDS
AAAGAGAAGTGTCTGTAGGT+GGG 0.614507 4_2:-59337674 None:intergenic
AGAGAAGCCCAATCAGCACT+GGG 0.614681 4_2:-59339844 None:intergenic
TCCTTTCCTTTGGAACCGCG+TGG 0.616101 4_2:-59335373 None:intergenic
AACACACGAAACTGAAAGAG+AGG 0.616372 4_2:-59341017 None:intergenic
TAGCAACGCTCGTCAATGCG+AGG 0.617597 4_2:+59335594 Msa0611220:CDS
GGTTACAGATAGTACAAGCA+GGG 0.617742 4_2:+59338933 Msa0611220:CDS
TTGTACCAATATCACTGGGA+AGG 0.623748 4_2:+59339399 Msa0611220:CDS
TGCAGCACAAGGAGTTGCGG+GGG 0.623891 4_2:+59336575 Msa0611220:CDS
TCATCTATCAGATCACGGAA+TGG 0.626890 4_2:-59338459 None:intergenic
CACGCGCACGGATACCGTAA+CGG 0.628074 4_2:-59335517 None:intergenic
AATACTGGACTTTCATCCAC+CGG 0.628533 4_2:-59339899 None:intergenic
GATGCAAATGGAGAAGATGC+TGG 0.629822 4_2:+59336552 Msa0611220:CDS
TTGGATCAGCCGGATCCCGA+AGG 0.630237 4_2:-59338428 None:intergenic
CAGGATCATCTATCAGATCA+CGG 0.631398 4_2:-59338464 None:intergenic
CCATGAGTTATAGGAAGACG+AGG 0.632867 4_2:-59339440 None:intergenic
ATGGTGCCCGGGTTGCTAGG+AGG 0.633326 4_2:+59336496 Msa0611220:CDS
AGGGAAAGAGAAGTGTCTGT+AGG 0.633562 4_2:-59337678 None:intergenic
CTTGAATCATTTATCAACGG+CGG 0.633577 4_2:+59336326 Msa0611220:CDS
GGAATAACATAAAATCCCTA+CGG 0.634285 4_2:+59335138 Msa0611220:five_prime_UTR
TGTAAACCAATAGCGAAGAA+GGG 0.635191 4_2:-59338810 None:intergenic
ACAGATGTTTGGGAAGACAA+TGG 0.641253 4_2:+59338178 Msa0611220:CDS
GGTCATCACGAATTGAATTG+TGG 0.642672 4_2:-59341077 None:intergenic
TGGCGGTGCTGTCGATGCGG+TGG 0.644576 4_2:-59335416 None:intergenic
ACCGGTATCTGATTGGCCGG+AGG 0.647436 4_2:+59341097 Msa0611220:CDS
CTCCACCGACTCGGTCGCCG+CGG 0.647652 4_2:+59335246 Msa0611220:five_prime_UTR
AGCAGAAAATTAGAGTCGAT+AGG 0.647688 4_2:-59337932 None:intergenic
GAAAATGGAAATGGGGAGCG+AGG 0.648990 4_2:+59338899 Msa0611220:CDS
GCATTTGATGACCATGGTGA+AGG 0.649658 4_2:+59338082 Msa0611220:CDS
GGAGTTCCGTCGAGAGAAGG+CGG 0.650193 4_2:-59335298 None:intergenic
TTGCAGAAAGCAGGAAACCA+TGG 0.651313 4_2:-59336368 None:intergenic
TAATCAAGAAAATGGAAATG+GGG 0.652387 4_2:+59338892 Msa0611220:CDS
TTGCCTAGACCTGATGACAA+TGG 0.653839 4_2:+59338869 Msa0611220:CDS
GGAACCGCGTGGAGACGAAG+AGG 0.655389 4_2:-59335362 None:intergenic
GTTCCGTCGAGAGAAGGCGG+TGG 0.655449 4_2:-59335295 None:intergenic
CATCCATTAGAGGCATCATG+TGG 0.655656 4_2:-59340783 None:intergenic
AGCCACCACCCACACATCAG+GGG 0.658349 4_2:-59338140 None:intergenic
TTACGCGTGTGTACGTGTGT+TGG 0.660204 4_2:-59335089 None:intergenic
AGTGGACAGAAATGGTGCCC+GGG 0.663742 4_2:+59336485 Msa0611220:CDS
TGTGCCAATGAGAGTTCCGG+TGG 0.678961 4_2:+59339883 Msa0611220:CDS
GTAGTTGTACCAATATCACT+GGG 0.680967 4_2:+59339395 Msa0611220:CDS
GGATGACGCTGATGGAGCAG+AGG 0.682504 4_2:+59336698 Msa0611220:CDS
ATACTGCCGCTACACGCGCA+CGG 0.683557 4_2:-59335529 None:intergenic
GTAATATAAATCCCAAACAA+GGG 0.686248 4_2:+59335108 Msa0611220:five_prime_UTR
GGTGACGTATATGGTCATGT+GGG 0.686662 4_2:-59335068 None:intergenic
ATGCCCAGTCTTGATAAAGG+AGG 0.687851 4_2:-59339922 None:intergenic
TAGGAAAGCCACCTTCACCA+TGG 0.688671 4_2:-59338093 None:intergenic
TAGCGATGCGGTGTTATCGG+TGG 0.691377 4_2:+59337647 Msa0611220:CDS
GGAGTTTCGGTGAAGCCCAG+AGG 0.696626 4_2:+59336298 Msa0611220:CDS
TTGGAAGAACAATCTCCCGT+AGG 0.698657 4_2:-59340873 None:intergenic
TGCCAGTTAAACTTGCAATG+CGG 0.699649 4_2:+59338559 Msa0611220:CDS
TGATATTGGTACAACTACCA+GGG 0.700682 4_2:-59339390 None:intergenic
TCGAGCAAATTAGAAAACGG+AGG 0.702540 4_2:+59339625 Msa0611220:CDS
AGGCATTTAAGAGAAATTGG+GGG 0.705875 4_2:+59336438 Msa0611220:CDS
ACGGATTATCAGCATCACCA+GGG 0.710347 4_2:-59335498 None:intergenic
CAGAAAGCAGGAAACCATGG+AGG 0.712468 4_2:-59336365 None:intergenic
AATGAGGCATTTGATGACCA+TGG 0.713027 4_2:+59338076 Msa0611220:CDS
GAGGCACGTAAATCAACAGG+CGG 0.720143 4_2:+59341248 Msa0611220:CDS
GTTACAGATAGTACAAGCAG+GGG 0.720717 4_2:+59338934 Msa0611220:CDS
TCTTCCTCTTCGTCTCCACG+CGG 0.721480 4_2:+59335358 Msa0611220:CDS
CAAAGGAAAGGAGATCGATG+CGG 0.735593 4_2:+59335384 Msa0611220:CDS
AGATGGCGGTGCTGTCGATG+CGG 0.748320 4_2:-59335419 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATATTTTTTTTTATTTT+TGG + chr4_2:59341516-59341535 Msa0611220:three_prime_UTR 0.0%
!! AATGAGAATTATTAAAAAAA+AGG - chr4_2:59335220-59335239 None:intergenic 10.0%
!! ATAATAATTTAACGAAAATT+TGG + chr4_2:59335807-59335826 Msa0611220:intron 10.0%
!! AAAAAAATCATATGTTTAAA+AGG - chr4_2:59337005-59337024 None:intergenic 10.0%
!!! TGCATTTTTTAATGTAATAT+TGG - chr4_2:59337706-59337725 None:intergenic 15.0%
!! TAAAATCCTATAACTATATT+AGG + chr4_2:59339077-59339096 Msa0611220:intron 15.0%
!! AATTTATGCATTATCAAATT+GGG - chr4_2:59339762-59339781 None:intergenic 15.0%
!! AAATTTATGCATTATCAAAT+TGG - chr4_2:59339763-59339782 None:intergenic 15.0%
!!! ATAAATTTTCATTTGTTCTT+TGG + chr4_2:59339775-59339794 Msa0611220:intron 15.0%
!!! ATTCGTTTTTTTTTTCTTTT+TGG + chr4_2:59339804-59339823 Msa0611220:intron 15.0%
!! ATAAATTCAAGAAAATTTCT+AGG - chr4_2:59340217-59340236 None:intergenic 15.0%
!! AGATTCATAGTTAATATAAT+TGG + chr4_2:59340424-59340443 Msa0611220:intron 15.0%
!! TAAATAATTTAGCTAATAGT+AGG + chr4_2:59341470-59341489 Msa0611220:three_prime_UTR 15.0%
!!! TTCTTTTGAAATTATGTAGT+AGG + chr4_2:59335966-59335985 Msa0611220:intron 20.0%
!! ATTCTTGAATCATTTATCAA+CGG + chr4_2:59336323-59336342 Msa0611220:CDS 20.0%
!! ATCAAAATATAACTGAACAT+AGG - chr4_2:59336933-59336952 None:intergenic 20.0%
!! AAAAGGATAAACTACAAAAA+CGG - chr4_2:59336988-59337007 None:intergenic 20.0%
!! TAATTCTTCATTATCTATCA+TGG + chr4_2:59337610-59337629 Msa0611220:CDS 20.0%
!!! TTTTAATGTAATATTGGCTA+GGG - chr4_2:59337700-59337719 None:intergenic 20.0%
!!! TTTTTAATGTAATATTGGCT+AGG - chr4_2:59337701-59337720 None:intergenic 20.0%
!! TTCCTATTAGTTATTGAATT+AGG + chr4_2:59338110-59338129 Msa0611220:CDS 20.0%
!! TCCTATTAGTTATTGAATTA+GGG + chr4_2:59338111-59338130 Msa0611220:CDS 20.0%
!! TATGATATATTTGTTTCGAA+TGG + chr4_2:59338376-59338395 Msa0611220:intron 20.0%
!! AACTATTAAAATTGCTTAAG+GGG - chr4_2:59338626-59338645 None:intergenic 20.0%
!! CAACTATTAAAATTGCTTAA+GGG - chr4_2:59338627-59338646 None:intergenic 20.0%
!! TCAACTATTAAAATTGCTTA+AGG - chr4_2:59338628-59338647 None:intergenic 20.0%
!! ATGATTCCTAATATAGTTAT+AGG - chr4_2:59339086-59339105 None:intergenic 20.0%
!!! ACTAATGATGTTGATTTTTT+TGG + chr4_2:59340354-59340373 Msa0611220:intron 20.0%
!!! CTAATGATGTTGATTTTTTT+GGG + chr4_2:59340355-59340374 Msa0611220:intron 20.0%
!!! TAATGATGTTGATTTTTTTG+GGG + chr4_2:59340356-59340375 Msa0611220:intron 20.0%
! TTTGCCATAAAGAGATTATA+AGG + chr4_2:59334946-59334965 Msa0611220:five_prime_UTR 25.0%
!! TGGTTGGTATATTTATGTTA+TGG - chr4_2:59335015-59335034 None:intergenic 25.0%
! GTAATATAAATCCCAAACAA+GGG + chr4_2:59335108-59335127 Msa0611220:five_prime_UTR 25.0%
! ATAAACAATAACGAAGAGAA+AGG - chr4_2:59335627-59335646 None:intergenic 25.0%
! TTTATGTGTATAGTGATCAT+AGG + chr4_2:59335642-59335661 Msa0611220:intron 25.0%
! GGTTATGCTATTGTATTATA+TGG + chr4_2:59335847-59335866 Msa0611220:intron 25.0%
! AAATCTATCACAATTTAGAG+AGG - chr4_2:59336030-59336049 None:intergenic 25.0%
!! AAATTGTGATAGATTTTCCT+TGG + chr4_2:59336034-59336053 Msa0611220:intron 25.0%
! TTATACCTTTCATAACATTC+TGG + chr4_2:59336253-59336272 Msa0611220:CDS 25.0%
! TTTAGGCATTTAAGAGAAAT+TGG + chr4_2:59336435-59336454 Msa0611220:CDS 25.0%
! TTAGGCATTTAAGAGAAATT+GGG + chr4_2:59336436-59336455 Msa0611220:CDS 25.0%
!! TTTTCAACCAAATGAAAAAC+CGG - chr4_2:59336759-59336778 None:intergenic 25.0%
! TTTGGTTGAAAATGCATTTA+CGG + chr4_2:59336767-59336786 Msa0611220:CDS 25.0%
! TGCTTCTCTATATAGAAAAT+GGG + chr4_2:59336863-59336882 Msa0611220:intron 25.0%
!! TTTTAACATCCAACTTCAAT+AGG + chr4_2:59337165-59337184 Msa0611220:intron 25.0%
! TTTAACATCCAACTTCAATA+GGG + chr4_2:59337166-59337185 Msa0611220:intron 25.0%
!! GATCATTTTCCAATGATAAT+TGG + chr4_2:59337368-59337387 Msa0611220:intron 25.0%
! CCTATTAGTTATTGAATTAG+GGG + chr4_2:59338112-59338131 Msa0611220:CDS 25.0%
! TAAGCATTATATCATGTGAA+AGG - chr4_2:59338324-59338343 None:intergenic 25.0%
!! CAATATTTCAAGTGGAAAAA+TGG - chr4_2:59338595-59338614 None:intergenic 25.0%
! TTAAAATGCTCAATAGCAAA+TGG - chr4_2:59338770-59338789 None:intergenic 25.0%
! GTAATCAAGAAAATGGAAAT+GGG + chr4_2:59338891-59338910 Msa0611220:CDS 25.0%
! TAATCAAGAAAATGGAAATG+GGG + chr4_2:59338892-59338911 Msa0611220:CDS 25.0%
!!! TTATAGGATTTTAATTTGCG+AGG - chr4_2:59339070-59339089 None:intergenic 25.0%
!! TTATGTACACTTTTGTCTTT+GGG + chr4_2:59339136-59339155 Msa0611220:intron 25.0%
!! ACTTTTCATGCATTTCATTA+TGG - chr4_2:59339212-59339231 None:intergenic 25.0%
! TCCATATCTTGAGAAATATA+AGG - chr4_2:59339952-59339971 None:intergenic 25.0%
! CAGAGGAAAAAAAATAATGA+AGG - chr4_2:59339995-59340014 None:intergenic 25.0%
! AATCAACAAAAGATTAACAG+AGG - chr4_2:59340012-59340031 None:intergenic 25.0%
!! TCTGTTAATCTTTTGTTGAT+TGG + chr4_2:59340011-59340030 Msa0611220:intron 25.0%
! CCATGTAATCTAAATTAAGA+TGG - chr4_2:59340127-59340146 None:intergenic 25.0%
! CCATCTTAATTTAGATTACA+TGG + chr4_2:59340124-59340143 Msa0611220:intron 25.0%
!!! GGATATATGAGTTTTATTAG+AGG + chr4_2:59340445-59340464 Msa0611220:intron 25.0%
! GGAAATTCATCATCTAAAAA+CGG - chr4_2:59340509-59340528 None:intergenic 25.0%
!!! AACATTTTGGCAATTTCTTT+TGG - chr4_2:59340557-59340576 None:intergenic 25.0%
! TTTCACATCTGACTAATAAT+AGG + chr4_2:59340576-59340595 Msa0611220:intron 25.0%
! TTCACATCTGACTAATAATA+GGG + chr4_2:59340577-59340596 Msa0611220:intron 25.0%
! AAACAACAAAAAACTACCAA+TGG - chr4_2:59340643-59340662 None:intergenic 25.0%
! GTCAATAGTTTCATTATGAT+TGG - chr4_2:59340895-59340914 None:intergenic 25.0%
!!! CGATCTTGTTGATTTATATT+TGG - chr4_2:59341204-59341223 None:intergenic 25.0%
! AGAAGTTTCCTGTTAATTTA+TGG + chr4_2:59341584-59341603 Msa0611220:three_prime_UTR 25.0%
TGCACCTTATAATCTCTTTA+TGG - chr4_2:59334953-59334972 None:intergenic 30.0%
ATAAAGAGATTATAAGGTGC+AGG + chr4_2:59334952-59334971 Msa0611220:five_prime_UTR 30.0%
AGTTATGGTAGGTTATGTTA+TGG - chr4_2:59334984-59335003 None:intergenic 30.0%
CGTAATATAAATCCCAAACA+AGG + chr4_2:59335107-59335126 Msa0611220:five_prime_UTR 30.0%
! TAGGGATTTTATGTTATTCC+GGG - chr4_2:59335138-59335157 None:intergenic 30.0%
! GTAGGGATTTTATGTTATTC+CGG - chr4_2:59335139-59335158 None:intergenic 30.0%
GGAATAACATAAAATCCCTA+CGG + chr4_2:59335138-59335157 Msa0611220:five_prime_UTR 30.0%
ATATTAGAGAGAGAAAGAGA+GGG - chr4_2:59335168-59335187 None:intergenic 30.0%
!! TTGGTGCTAAGAATTAAGAA+AGG + chr4_2:59335826-59335845 Msa0611220:intron 30.0%
CATATCCAGAATGTTATGAA+AGG - chr4_2:59336261-59336280 None:intergenic 30.0%
CTTTCATAACATTCTGGATA+TGG + chr4_2:59336259-59336278 Msa0611220:CDS 30.0%
ATGATTCAAGAATAACCTCT+GGG - chr4_2:59336316-59336335 None:intergenic 30.0%
AATGATTCAAGAATAACCTC+TGG - chr4_2:59336317-59336336 None:intergenic 30.0%
!! AGCATTGTCTTCATTTTTCT+TGG + chr4_2:59336390-59336409 Msa0611220:CDS 30.0%
!! GCATTGTCTTCATTTTTCTT+GGG + chr4_2:59336391-59336410 Msa0611220:CDS 30.0%
!! CATTGTCTTCATTTTTCTTG+GGG + chr4_2:59336392-59336411 Msa0611220:CDS 30.0%
! CTTCTTTGAGAGATTACTTT+AGG + chr4_2:59336418-59336437 Msa0611220:CDS 30.0%
TAGGCATTTAAGAGAAATTG+GGG + chr4_2:59336437-59336456 Msa0611220:CDS 30.0%
CAAGCTAATCGTAATGTTAA+TGG + chr4_2:59336528-59336547 Msa0611220:CDS 30.0%
! AATGTTAATGGTGATGCAAA+TGG + chr4_2:59336540-59336559 Msa0611220:CDS 30.0%
CTGCTTCTCTATATAGAAAA+TGG + chr4_2:59336862-59336881 Msa0611220:intron 30.0%
!! TTTTGATGATCATCTAATCC+TGG + chr4_2:59336946-59336965 Msa0611220:intron 30.0%
GATGTTTCTTGAGTACATTA+AGG - chr4_2:59337112-59337131 None:intergenic 30.0%
TTAACATCCAACTTCAATAG+GGG + chr4_2:59337167-59337186 Msa0611220:intron 30.0%
TTTCAACAAACAGAACATTG+AGG - chr4_2:59337209-59337228 None:intergenic 30.0%
AAGCAATTACATCGATAGAA+TGG - chr4_2:59337298-59337317 None:intergenic 30.0%
AAGCAATAGCCAATTATCAT+TGG - chr4_2:59337380-59337399 None:intergenic 30.0%
!! GAATGATTTGTTCATTATGC+AGG + chr4_2:59337524-59337543 Msa0611220:intron 30.0%
GATTTCTGATGTTACTACTT+TGG + chr4_2:59337893-59337912 Msa0611220:CDS 30.0%
!! ACTCTAATTTTCTGCTACTT+CGG + chr4_2:59337939-59337958 Msa0611220:CDS 30.0%
CCCCTAATTCAATAACTAAT+AGG - chr4_2:59338115-59338134 None:intergenic 30.0%
ATATATTTGTTTCGAATGGC+AGG + chr4_2:59338380-59338399 Msa0611220:intron 30.0%
! ATTTCAAGTGGAAAAATGGA+AGG - chr4_2:59338591-59338610 None:intergenic 30.0%
CAAGTTTAACAACTGTAACA+GGG - chr4_2:59338669-59338688 None:intergenic 30.0%
TCAAGTTTAACAACTGTAAC+AGG - chr4_2:59338670-59338689 None:intergenic 30.0%
!!! TGAATCTGTTTATTTTGTGC+AGG + chr4_2:59338687-59338706 Msa0611220:intron 30.0%
! CTATTGAGCATTTTAAACTC+AGG + chr4_2:59338774-59338793 Msa0611220:CDS 30.0%
GACAATGGTAATCAAGAAAA+TGG + chr4_2:59338884-59338903 Msa0611220:CDS 30.0%
GGTAATCAAGAAAATGGAAA+TGG + chr4_2:59338890-59338909 Msa0611220:CDS 30.0%
GATAGACACAAATGCAATAT+TGG - chr4_2:59339109-59339128 None:intergenic 30.0%
! GTTATGTACACTTTTGTCTT+TGG + chr4_2:59339135-59339154 Msa0611220:intron 30.0%
! TATGTACACTTTTGTCTTTG+GGG + chr4_2:59339137-59339156 Msa0611220:intron 30.0%
!!! CATGATGTGGTATTTTTTCA+TGG + chr4_2:59339173-59339192 Msa0611220:intron 30.0%
CAATCGAGCAAATTAGAAAA+CGG + chr4_2:59339622-59339641 Msa0611220:CDS 30.0%
!!! CAGTTTTGTTGAACCAAATT+TGG + chr4_2:59339652-59339671 Msa0611220:CDS 30.0%
GCCTTATATTTCTCAAGATA+TGG + chr4_2:59339948-59339967 Msa0611220:CDS 30.0%
!! GCATTTAAAGAAGTTGATAG+AGG - chr4_2:59340056-59340075 None:intergenic 30.0%
TAAATGCATGCTATCATATC+TGG + chr4_2:59340095-59340114 Msa0611220:intron 30.0%
CTATTTCATGTCTCATTACA+TGG - chr4_2:59340259-59340278 None:intergenic 30.0%
CATGTAATGAGACATGAAAT+AGG + chr4_2:59340257-59340276 Msa0611220:intron 30.0%
CATCAAATGAGAATACCATA+AGG - chr4_2:59340294-59340313 None:intergenic 30.0%
!!! GATTTTTTTGGGGATTGTAA+TGG + chr4_2:59340366-59340385 Msa0611220:intron 30.0%
! TAATTCTTTTGTCAGCTGAA+TGG - chr4_2:59340530-59340549 None:intergenic 30.0%
! AGTCAGATGTGAAAACATTT+TGG - chr4_2:59340570-59340589 None:intergenic 30.0%
!!! TTTTGTTGTTTTTGTGTCAC+TGG + chr4_2:59340652-59340671 Msa0611220:intron 30.0%
TGATTGTTAGAACAAACCTT+GGG - chr4_2:59340704-59340723 None:intergenic 30.0%
TTGATTGTTAGAACAAACCT+TGG - chr4_2:59340705-59340724 None:intergenic 30.0%
! GGTTTGTTCTAACAATCAAT+TGG + chr4_2:59340706-59340725 Msa0611220:intron 30.0%
!! ATGTTCTTCTAGTATTGACT+TGG + chr4_2:59340737-59340756 Msa0611220:intron 30.0%
!! ATTGACTTGGTTCATTGATT+AGG + chr4_2:59340750-59340769 Msa0611220:intron 30.0%
! GTTCATTGATTAGGTTATGT+TGG + chr4_2:59340759-59340778 Msa0611220:intron 30.0%
! GTTATGTGTACCTTATGTTT+TGG + chr4_2:59340918-59340937 Msa0611220:CDS 30.0%
!! ATAGATAGAGTATTGCATAC+AGG - chr4_2:59341366-59341385 None:intergenic 30.0%
GTTATGGACGATGATAGTTA+TGG - chr4_2:59334999-59335018 None:intergenic 35.0%
! TATATGGTCATGTGGGTTTT+TGG - chr4_2:59335064-59335083 None:intergenic 35.0%
TATTAGAGAGAGAAAGAGAG+GGG - chr4_2:59335167-59335186 None:intergenic 35.0%
GATATTAGAGAGAGAAAGAG+AGG - chr4_2:59335169-59335188 None:intergenic 35.0%
AAGAGAGAGAAAGAGAGAAA+TGG - chr4_2:59335195-59335214 None:intergenic 35.0%
! ACAATTTAGAGAGGTGCATA+GGG - chr4_2:59336021-59336040 None:intergenic 35.0%
! TGTGATAGATTTTCCTTGGT+TGG + chr4_2:59336038-59336057 Msa0611220:intron 35.0%
! GTGATAGATTTTCCTTGGTT+GGG + chr4_2:59336039-59336058 Msa0611220:intron 35.0%
! TGATAGATTTTCCTTGGTTG+GGG + chr4_2:59336040-59336059 Msa0611220:intron 35.0%
!! GTTGGGGTTATTTTGTTGAT+GGG + chr4_2:59336056-59336075 Msa0611220:intron 35.0%
TAAACAGGTGAGAAGGAAAA+TGG - chr4_2:59336111-59336130 None:intergenic 35.0%
TCATAACATTCTGGATATGG+AGG + chr4_2:59336262-59336281 Msa0611220:CDS 35.0%
!! TTAGCTTTTGTGAGGAGTTT+CGG + chr4_2:59336285-59336304 Msa0611220:CDS 35.0%
CTTGAATCATTTATCAACGG+CGG + chr4_2:59336326-59336345 Msa0611220:CDS 35.0%
AGGCATTTAAGAGAAATTGG+GGG + chr4_2:59336438-59336457 Msa0611220:CDS 35.0%
CATGTTGAACAGATGTTTGA+TGG + chr4_2:59336672-59336691 Msa0611220:CDS 35.0%
ATGCCAACAAGTTCATCAAA+GGG - chr4_2:59336729-59336748 None:intergenic 35.0%
! CTATGAGTTAGGTTTTTCCT+AGG - chr4_2:59336897-59336916 None:intergenic 35.0%
GTAGTATGCAACTATGAGTT+AGG - chr4_2:59336908-59336927 None:intergenic 35.0%
AGGATAAACTACAAAAACGG+TGG - chr4_2:59336985-59337004 None:intergenic 35.0%
! TCCGAACTCAAGAAACATTT+TGG + chr4_2:59337048-59337067 Msa0611220:intron 35.0%
GCCAAAATGTTTCTTGAGTT+CGG - chr4_2:59337052-59337071 None:intergenic 35.0%
TCAACATGCTCATTTAAACC+AGG - chr4_2:59337139-59337158 None:intergenic 35.0%
GGTTTAAATGAGCATGTTGA+TGG + chr4_2:59337139-59337158 Msa0611220:intron 35.0%
! GCAAGCAATATGATTTTCCT+TGG + chr4_2:59337552-59337571 Msa0611220:CDS 35.0%
! CTATCATGGTTCTTTTCAAC+TGG + chr4_2:59337624-59337643 Msa0611220:CDS 35.0%
GTTTCAGATGATCTCTTGAA+AGG + chr4_2:59337849-59337868 Msa0611220:CDS 35.0%
AGTAGTAACATCAGAAATCC+TGG - chr4_2:59337892-59337911 None:intergenic 35.0%
AGCAGAAAATTAGAGTCGAT+AGG - chr4_2:59337935-59337954 None:intergenic 35.0%
TAAAATCTTCCTGCAGTCAA+AGG - chr4_2:59337999-59338018 None:intergenic 35.0%
! TTGACTGCAGGAAGATTTTA+TGG + chr4_2:59337999-59338018 Msa0611220:CDS 35.0%
TTTGCACCATACAGATGTTT+GGG + chr4_2:59338168-59338187 Msa0611220:CDS 35.0%
ATATTTGTCAGCCTTCTTAG+AGG + chr4_2:59338290-59338309 Msa0611220:CDS 35.0%
TATTTGTCAGCCTTCTTAGA+GGG + chr4_2:59338291-59338310 Msa0611220:CDS 35.0%
!! TCACGGAATGGATTATAGTT+TGG - chr4_2:59338450-59338469 None:intergenic 35.0%
TTGTTATCTGTTGCGGTTTA+TGG + chr4_2:59338510-59338529 Msa0611220:CDS 35.0%
TGTTATCTGTTGCGGTTTAT+GGG + chr4_2:59338511-59338530 Msa0611220:CDS 35.0%
CCAGCTTACAATATTTCAAG+TGG - chr4_2:59338603-59338622 None:intergenic 35.0%
CCACTTGAAATATTGTAAGC+TGG + chr4_2:59338600-59338619 Msa0611220:intron 35.0%
AAGCATGTTAGCTGGAATTT+CGG - chr4_2:59338729-59338748 None:intergenic 35.0%
TGTAAACCAATAGCGAAGAA+GGG - chr4_2:59338813-59338832 None:intergenic 35.0%
TCTTGATTACCATTGTCATC+AGG - chr4_2:59338881-59338900 None:intergenic 35.0%
TGATATTGGTACAACTACCA+GGG - chr4_2:59339393-59339412 None:intergenic 35.0%
GTAGTTGTACCAATATCACT+GGG + chr4_2:59339395-59339414 Msa0611220:CDS 35.0%
CACTTAATGCCATGAGTTAT+AGG - chr4_2:59339452-59339471 None:intergenic 35.0%
CACATAACTTCCAATGATGA+AGG - chr4_2:59339571-59339590 None:intergenic 35.0%
TCATTGGAAGTTATGTGATC+TGG + chr4_2:59339574-59339593 Msa0611220:CDS 35.0%
TGTTGAACCAAATTTGGAAG+TGG + chr4_2:59339658-59339677 Msa0611220:CDS 35.0%
! TTCTGCCCTTTTGTCTATAT+GGG + chr4_2:59339701-59339720 Msa0611220:CDS 35.0%
CCTTACCCATATAGACAAAA+GGG - chr4_2:59339709-59339728 None:intergenic 35.0%
TCCTTACCCATATAGACAAA+AGG - chr4_2:59339710-59339729 None:intergenic 35.0%
TCTTGATAAAGGAGGAATAC+TGG - chr4_2:59339917-59339936 None:intergenic 35.0%
TATTCCTCCTTTATCAAGAC+TGG + chr4_2:59339918-59339937 Msa0611220:CDS 35.0%
ATTCCTCCTTTATCAAGACT+GGG + chr4_2:59339919-59339938 Msa0611220:CDS 35.0%
!! TCTCAAGATATGGACTAGAT+TGG + chr4_2:59339958-59339977 Msa0611220:CDS 35.0%
TAGGCACTATATTGTCCTTA+TGG + chr4_2:59340276-59340295 Msa0611220:intron 35.0%
CATCATCTAAAAACGGTAGA+TGG - chr4_2:59340502-59340521 None:intergenic 35.0%
CAACAAAAAACTACCAATGG+CGG - chr4_2:59340640-59340659 None:intergenic 35.0%
ACAGATAACCCATCTACAAA+TGG - chr4_2:59340678-59340697 None:intergenic 35.0%
GATTGTTAGAACAAACCTTG+GGG - chr4_2:59340703-59340722 None:intergenic 35.0%
ACAATTCAATTCGTGATGAC+CGG + chr4_2:59341079-59341098 Msa0611220:CDS 35.0%
AGAATGCATGCTAAGATAGA+TGG + chr4_2:59341548-59341567 Msa0611220:three_prime_UTR 35.0%
CAATGCTTAGTAAAGAGTTG+AGG + chr4_2:59341673-59341692 Msa0611220:three_prime_UTR 35.0%
AGATTATAAGGTGCAGGCAA+TGG + chr4_2:59334958-59334977 Msa0611220:five_prime_UTR 40.0%
TGGACGATGATAGTTATGGT+AGG - chr4_2:59334995-59335014 None:intergenic 40.0%
! GGTTGTGATTTGTGTTTGGT+TGG - chr4_2:59335031-59335050 None:intergenic 40.0%
GAGAGAAAGAGAGAAATGGT+GGG - chr4_2:59335191-59335210 None:intergenic 40.0%
AGAGAGAAAGAGAGAAATGG+TGG - chr4_2:59335192-59335211 None:intergenic 40.0%
! TCATCGTATTTTGCAGATGG+CGG - chr4_2:59335436-59335455 None:intergenic 40.0%
! TCGTCATCGTATTTTGCAGA+TGG - chr4_2:59335439-59335458 None:intergenic 40.0%
AGGATGTTTGCCGTATTTGT+CGG + chr4_2:59335473-59335492 Msa0611220:CDS 40.0%
GTGATGCTGATAATCCGTTA+CGG + chr4_2:59335503-59335522 Msa0611220:CDS 40.0%
ATCAAGATTGTCTCCTTCAG+TGG + chr4_2:59335563-59335582 Msa0611220:CDS 40.0%
TGCTATGATTAAGCCACTGA+AGG - chr4_2:59335579-59335598 None:intergenic 40.0%
! CACAATTTAGAGAGGTGCAT+AGG - chr4_2:59336022-59336041 None:intergenic 40.0%
CAACAAAATAACCCCAACCA+AGG - chr4_2:59336054-59336073 None:intergenic 40.0%
!! GGTTGGGGTTATTTTGTTGA+TGG + chr4_2:59336055-59336074 Msa0611220:intron 40.0%
ATGGGCTTAAAATGTGTTGC+AGG + chr4_2:59336074-59336093 Msa0611220:intron 40.0%
!! GTTGCCTTTTCAAGAGTTTG+TGG + chr4_2:59336152-59336171 Msa0611220:CDS 40.0%
!! CCTTTTCAAGAGTTTGTGGT+GGG + chr4_2:59336156-59336175 Msa0611220:CDS 40.0%
!!! TATGGAGGTTAGCTTTTGTG+AGG + chr4_2:59336277-59336296 Msa0611220:CDS 40.0%
TTTAAGAGAAATTGGGGGAC+AGG + chr4_2:59336443-59336462 Msa0611220:CDS 40.0%
GAAGATGAAGTGGACAGAAA+TGG + chr4_2:59336477-59336496 Msa0611220:CDS 40.0%
! TGAACAGATGTTTGATGGTC+TGG + chr4_2:59336677-59336696 Msa0611220:CDS 40.0%
GTACCCTTTGATGAACTTGT+TGG + chr4_2:59336723-59336742 Msa0611220:CDS 40.0%
CATGCCAACAAGTTCATCAA+AGG - chr4_2:59336730-59336749 None:intergenic 40.0%
GAAAATGGGTAATCTGACCT+AGG + chr4_2:59336877-59336896 Msa0611220:intron 40.0%
TCATCTAATCCTGGTGTTTC+TGG + chr4_2:59336955-59336974 Msa0611220:intron 40.0%
CTTGAGTTCGGAACACATTA+AGG - chr4_2:59337040-59337059 None:intergenic 40.0%
ACTCAAGAAACATCTTTGCC+TGG + chr4_2:59337118-59337137 Msa0611220:intron 40.0%
ATCGATAGAATGGCAACTAG+GGG - chr4_2:59337288-59337307 None:intergenic 40.0%
CATCGATAGAATGGCAACTA+GGG - chr4_2:59337289-59337308 None:intergenic 40.0%
ACATCGATAGAATGGCAACT+AGG - chr4_2:59337290-59337309 None:intergenic 40.0%
TCAACTGAAGCAGTATTCTC+TGG + chr4_2:59337343-59337362 Msa0611220:intron 40.0%
CAACTGAAGCAGTATTCTCT+GGG + chr4_2:59337344-59337363 Msa0611220:intron 40.0%
TTTGTTCATTATGCAGGTGC+TGG + chr4_2:59337530-59337549 Msa0611220:intron 40.0%
GCAGAAAGATTACAACTCCA+AGG - chr4_2:59337572-59337591 None:intergenic 40.0%
AATCTTTCTGCCCTTCTCAT+TGG + chr4_2:59337581-59337600 Msa0611220:CDS 40.0%
ATCTTTCTGCCCTTCTCATT+GGG + chr4_2:59337582-59337601 Msa0611220:CDS 40.0%
ATTATGCGACCCAATGAGAA+GGG - chr4_2:59337594-59337613 None:intergenic 40.0%
AATTATGCGACCCAATGAGA+AGG - chr4_2:59337595-59337614 None:intergenic 40.0%
!! AAAGAGAAGTGTCTGTAGGT+GGG - chr4_2:59337677-59337696 None:intergenic 40.0%
TCAACTGCTACTCAAGAAAG+TGG + chr4_2:59337747-59337766 Msa0611220:CDS 40.0%
ACTCAAGAAAGTGGATCAGT+TGG + chr4_2:59337756-59337775 Msa0611220:CDS 40.0%
TCAGATGATCTCTTGAAAGG+AGG + chr4_2:59337852-59337871 Msa0611220:CDS 40.0%
CAGATGATCTCTTGAAAGGA+GGG + chr4_2:59337853-59337872 Msa0611220:CDS 40.0%
GATGTTACTACTTTGGCAGT+TGG + chr4_2:59337900-59337919 Msa0611220:CDS 40.0%
TGCGTTAATTCGCTACACAA+AGG + chr4_2:59337968-59337987 Msa0611220:CDS 40.0%
GCGTTAATTCGCTACACAAA+GGG + chr4_2:59337969-59337988 Msa0611220:CDS 40.0%
AGACAATTCCATCTCTCTTC+AGG + chr4_2:59338039-59338058 Msa0611220:CDS 40.0%
AAAAACTGCCTGAAGAGAGA+TGG - chr4_2:59338050-59338069 None:intergenic 40.0%
! AATGAGGCATTTGATGACCA+TGG + chr4_2:59338076-59338095 Msa0611220:CDS 40.0%
GTTTGCACCATACAGATGTT+TGG + chr4_2:59338167-59338186 Msa0611220:CDS 40.0%
TGTCTTCCCAAACATCTGTA+TGG - chr4_2:59338177-59338196 None:intergenic 40.0%
ACAGATGTTTGGGAAGACAA+TGG + chr4_2:59338178-59338197 Msa0611220:CDS 40.0%
TTCTCCTTTAGCAAGCTCAT+TGG + chr4_2:59338226-59338245 Msa0611220:CDS 40.0%
ATTTGTCAGCCTTCTTAGAG+GGG + chr4_2:59338292-59338311 Msa0611220:CDS 40.0%
! AGGAAATTACCCCTCTAAGA+AGG - chr4_2:59338304-59338323 None:intergenic 40.0%
!! ATGGGGTTTTGTACTTCCTT+CGG + chr4_2:59338412-59338431 Msa0611220:CDS 40.0%
GGATTATAGTTTGGATCAGC+CGG - chr4_2:59338441-59338460 None:intergenic 40.0%
TCATCTATCAGATCACGGAA+TGG - chr4_2:59338462-59338481 None:intergenic 40.0%
CAGGATCATCTATCAGATCA+CGG - chr4_2:59338467-59338486 None:intergenic 40.0%
!!! CAGGGTTTTGTTATCTGTTG+CGG + chr4_2:59338503-59338522 Msa0611220:CDS 40.0%
TGGGAGTTTGATTGTTATGC+TGG + chr4_2:59338530-59338549 Msa0611220:CDS 40.0%
TGCCAGTTAAACTTGCAATG+CGG + chr4_2:59338559-59338578 Msa0611220:CDS 40.0%
ATCCGCATTGCAAGTTTAAC+TGG - chr4_2:59338564-59338583 None:intergenic 40.0%
AGTTAAACTTGCAATGCGGA+TGG + chr4_2:59338563-59338582 Msa0611220:CDS 40.0%
TTAGCTGGAATTTCGGTGAA+GGG - chr4_2:59338722-59338741 None:intergenic 40.0%
! TGAAAGAGAAGCATGTTAGC+TGG - chr4_2:59338737-59338756 None:intergenic 40.0%
TCAAATCCCTTCTTCGCTAT+TGG + chr4_2:59338804-59338823 Msa0611220:CDS 40.0%
CTGTAAACCAATAGCGAAGA+AGG - chr4_2:59338814-59338833 None:intergenic 40.0%
! ATTGGTTTACAGCAGTTGGT+TGG + chr4_2:59338822-59338841 Msa0611220:CDS 40.0%
TTGGTTTACAGCAGTTGGTT+GGG + chr4_2:59338823-59338842 Msa0611220:CDS 40.0%
TTACCATTGTCATCAGGTCT+AGG - chr4_2:59338875-59338894 None:intergenic 40.0%
AGGTTACAGATAGTACAAGC+AGG + chr4_2:59338932-59338951 Msa0611220:CDS 40.0%
GGTTACAGATAGTACAAGCA+GGG + chr4_2:59338933-59338952 Msa0611220:CDS 40.0%
GTTACAGATAGTACAAGCAG+GGG + chr4_2:59338934-59338953 Msa0611220:CDS 40.0%
TTCAAATCATCGCCAGCAAA+TGG - chr4_2:59338980-59338999 None:intergenic 40.0%
AAGAACAATGCGAAGTGCAA+AGG - chr4_2:59339327-59339346 None:intergenic 40.0%
GTGATATTGGTACAACTACC+AGG - chr4_2:59339394-59339413 None:intergenic 40.0%
GGTAGTTGTACCAATATCAC+TGG + chr4_2:59339394-59339413 Msa0611220:CDS 40.0%
TTGTACCAATATCACTGGGA+AGG + chr4_2:59339399-59339418 Msa0611220:CDS 40.0%
AGTATCCTTCCCAGTGATAT+TGG - chr4_2:59339407-59339426 None:intergenic 40.0%
AGTTATAGGAAGACGAGGAA+TGG - chr4_2:59339438-59339457 None:intergenic 40.0%
ACTCATGGCATTAAGTGCAA+TGG + chr4_2:59339455-59339474 Msa0611220:CDS 40.0%
GATCTGTATGCCTTCATCAT+TGG + chr4_2:59339558-59339577 Msa0611220:intron 40.0%
TCGAGCAAATTAGAAAACGG+AGG + chr4_2:59339625-59339644 Msa0611220:CDS 40.0%
TGCTACACCACTTCCAAATT+TGG - chr4_2:59339668-59339687 None:intergenic 40.0%
! GTTCTGCCCTTTTGTCTATA+TGG + chr4_2:59339700-59339719 Msa0611220:CDS 40.0%
! CCCTTTTGTCTATATGGGTA+AGG + chr4_2:59339706-59339725 Msa0611220:intron 40.0%
AATACTGGACTTTCATCCAC+CGG - chr4_2:59339902-59339921 None:intergenic 40.0%
CTTTATCAAGACTGGGCATT+GGG + chr4_2:59339926-59339945 Msa0611220:CDS 40.0%
AGTTACTTGAGTAGAGCAGA+AGG - chr4_2:59340150-59340169 None:intergenic 40.0%
AAATGTATCCTGCTGTGCAT+TGG + chr4_2:59340173-59340192 Msa0611220:intron 40.0%
TTTGGGGATTGTAATGGCAA+TGG + chr4_2:59340372-59340391 Msa0611220:intron 40.0%
AGAAACTAGTGTACTCAGTG+AGG - chr4_2:59340477-59340496 None:intergenic 40.0%
GAGAGACTGAAAAAGAAACG+AGG - chr4_2:59340614-59340633 None:intergenic 40.0%
! TGCCTCTAATGGATGAAAGT+TGG + chr4_2:59340791-59340810 Msa0611220:CDS 40.0%
TTGGCGAGTAAAGTTTGAGA+GGG + chr4_2:59340810-59340829 Msa0611220:CDS 40.0%
!! TGTCTATCGATTTGCATGGT+TGG + chr4_2:59340990-59341009 Msa0611220:CDS 40.0%
!! GTCTATCGATTTGCATGGTT+GGG + chr4_2:59340991-59341010 Msa0611220:CDS 40.0%
AACACACGAAACTGAAAGAG+AGG - chr4_2:59341020-59341039 None:intergenic 40.0%
GAACCAGACATGAAATCTCT+TGG - chr4_2:59341049-59341068 None:intergenic 40.0%
GGTCATCACGAATTGAATTG+TGG - chr4_2:59341080-59341099 None:intergenic 40.0%
AATGAAGCTGCAACTTCTAC+AGG + chr4_2:59341153-59341172 Msa0611220:CDS 40.0%
!!! GTGCAGGATGCTATTTTACT+TGG + chr4_2:59341177-59341196 Msa0611220:CDS 40.0%
ATTGAGGCACGTAAATCAAC+AGG + chr4_2:59341245-59341264 Msa0611220:CDS 40.0%
GTCTGAGTGAATTGTTTGTC+AGG + chr4_2:59341270-59341289 Msa0611220:exon 40.0%
GAGTGAATTGTTTGTCAGGT+AGG + chr4_2:59341274-59341293 Msa0611220:exon 40.0%
GAATTGTTTGTCAGGTAGGA+AGG + chr4_2:59341278-59341297 Msa0611220:three_prime_UTR 40.0%
CCAACGCACCATAAATTAAC+AGG - chr4_2:59341595-59341614 None:intergenic 40.0%
CCTGTTAATTTATGGTGCGT+TGG + chr4_2:59341592-59341611 Msa0611220:three_prime_UTR 40.0%
! GGAGGGTTGTGATTTGTGTT+TGG - chr4_2:59335035-59335054 None:intergenic 45.0%
GGTGACGTATATGGTCATGT+GGG - chr4_2:59335071-59335090 None:intergenic 45.0%
! TGGTGACGTATATGGTCATG+TGG - chr4_2:59335072-59335091 None:intergenic 45.0%
!! ACGTGTGTTGGTGACGTATA+TGG - chr4_2:59335080-59335099 None:intergenic 45.0%
!! ATTTTCACTCTCCACCGACT+CGG + chr4_2:59335237-59335256 Msa0611220:five_prime_UTR 45.0%
CAAAGGAAAGGAGATCGATG+CGG + chr4_2:59335384-59335403 Msa0611220:CDS 45.0%
TGACGACGATGAAGATGAAG+AGG + chr4_2:59335453-59335472 Msa0611220:CDS 45.0%
! ACGGATTATCAGCATCACCA+GGG - chr4_2:59335501-59335520 None:intergenic 45.0%
!! AACGGATTATCAGCATCACC+AGG - chr4_2:59335502-59335521 None:intergenic 45.0%
AGGTGCATAGGGCGAAAATT+TGG - chr4_2:59336010-59336029 None:intergenic 45.0%
CTCTGCATAAACAGGTGAGA+AGG - chr4_2:59336118-59336137 None:intergenic 45.0%
! GGAGCATTCTCTGCATAAAC+AGG - chr4_2:59336126-59336145 None:intergenic 45.0%
TCTTGAAAAGGCAACCTAGC+AGG - chr4_2:59336147-59336166 None:intergenic 45.0%
!! GCCTTTTCAAGAGTTTGTGG+TGG + chr4_2:59336155-59336174 Msa0611220:CDS 45.0%
CCCACCACAAACTCTTGAAA+AGG - chr4_2:59336159-59336178 None:intergenic 45.0%
! TCAAGAGTTTGTGGTGGGAA+TGG + chr4_2:59336161-59336180 Msa0611220:CDS 45.0%
!! TGAGTTTTGTGCTGTCTGTG+TGG + chr4_2:59336223-59336242 Msa0611220:CDS 45.0%
ATTCTGACTGATTGCCTCCA+TGG + chr4_2:59336351-59336370 Msa0611220:CDS 45.0%
TTGCAGAAAGCAGGAAACCA+TGG - chr4_2:59336371-59336390 None:intergenic 45.0%
AGACAATGCTTGCAGAAAGC+AGG - chr4_2:59336380-59336399 None:intergenic 45.0%
TGCGGATAGAGAAGATGAAG+TGG + chr4_2:59336467-59336486 Msa0611220:CDS 45.0%
!! TTACGATTAGCTTGTCCAGC+AGG - chr4_2:59336522-59336541 None:intergenic 45.0%
GATGCAAATGGAGAAGATGC+TGG + chr4_2:59336552-59336571 Msa0611220:CDS 45.0%
GGGCAGGTCAAGTAATTAGA+AGG + chr4_2:59336595-59336614 Msa0611220:CDS 45.0%
TGAAAATGTTGCTGCGCGAT+GGG + chr4_2:59336623-59336642 Msa0611220:CDS 45.0%
!! TGATGAACTTGTTGGCATGC+AGG + chr4_2:59336731-59336750 Msa0611220:CDS 45.0%
!! GATGAACTTGTTGGCATGCA+GGG + chr4_2:59336732-59336751 Msa0611220:CDS 45.0%
CAAGAAGCCCCTATTGAAGT+TGG - chr4_2:59337177-59337196 None:intergenic 45.0%
TCGATAGAATGGCAACTAGG+GGG - chr4_2:59337287-59337306 None:intergenic 45.0%
!! CTTTTCAACTGGTAGCGATG+CGG + chr4_2:59337635-59337654 Msa0611220:CDS 45.0%
!! GAAAGAGAAGTGTCTGTAGG+TGG - chr4_2:59337678-59337697 None:intergenic 45.0%
!! AGGGAAAGAGAAGTGTCTGT+AGG - chr4_2:59337681-59337700 None:intergenic 45.0%
CTCTTGAAAGGAGGGTCAAT+TGG + chr4_2:59337861-59337880 Msa0611220:CDS 45.0%
!!! GGCAGTTTTTAGCAGCAATG+AGG + chr4_2:59338060-59338079 Msa0611220:CDS 45.0%
! GCATTTGATGACCATGGTGA+AGG + chr4_2:59338082-59338101 Msa0611220:CDS 45.0%
! TTTGATGACCATGGTGAAGG+TGG + chr4_2:59338085-59338104 Msa0611220:CDS 45.0%
!! TGAGCCAATGAGCTTGCTAA+AGG - chr4_2:59338233-59338252 None:intergenic 45.0%
!! TAGCAAGCTCATTGGCTCAT+TGG + chr4_2:59338234-59338253 Msa0611220:CDS 45.0%
!! AGCAAGCTCATTGGCTCATT+GGG + chr4_2:59338235-59338254 Msa0611220:CDS 45.0%
!! TCATTGGCTCATTGGGTTGT+AGG + chr4_2:59338242-59338261 Msa0611220:CDS 45.0%
!! CATTGGCTCATTGGGTTGTA+GGG + chr4_2:59338243-59338262 Msa0611220:CDS 45.0%
! GTTTCGAATGGCAGGTTTTG+CGG + chr4_2:59338388-59338407 Msa0611220:intron 45.0%
! AATGGCAGGTTTTGCGGAAT+GGG + chr4_2:59338394-59338413 Msa0611220:intron 45.0%
!! TGGGGTTTTGTACTTCCTTC+GGG + chr4_2:59338413-59338432 Msa0611220:CDS 45.0%
TTTGTACTTCCTTCGGGATC+CGG + chr4_2:59338419-59338438 Msa0611220:CDS 45.0%
GTTAGCTGGAATTTCGGTGA+AGG - chr4_2:59338723-59338742 None:intergenic 45.0%
!! CGCTATTGGTTTACAGCAGT+TGG + chr4_2:59338818-59338837 Msa0611220:CDS 45.0%
TTGCCTAGACCTGATGACAA+TGG + chr4_2:59338869-59338888 Msa0611220:CDS 45.0%
AGAGTCACTAATGCAGATGC+TGG + chr4_2:59339001-59339020 Msa0611220:CDS 45.0%
!! GTACACTTTTGTCTTTGGGG+TGG + chr4_2:59339140-59339159 Msa0611220:intron 45.0%
ACTTCGCATTGTTCTTCTGC+TGG + chr4_2:59339331-59339350 Msa0611220:CDS 45.0%
TTCTTCTGCTGGTCATTGCT+TGG + chr4_2:59339342-59339361 Msa0611220:CDS 45.0%
CCATGAGTTATAGGAAGACG+AGG - chr4_2:59339443-59339462 None:intergenic 45.0%
CCTCGTCTTCCTATAACTCA+TGG + chr4_2:59339440-59339459 Msa0611220:CDS 45.0%
!! TTTGTCATCCCAGTGCTGAT+TGG + chr4_2:59339836-59339855 Msa0611220:CDS 45.0%
!! TTGTCATCCCAGTGCTGATT+GGG + chr4_2:59339837-59339856 Msa0611220:CDS 45.0%
! TGGGCTTCTCTTTGAGCTTT+TGG + chr4_2:59339856-59339875 Msa0611220:CDS 45.0%
CATTGTGCCAATGAGAGTTC+CGG + chr4_2:59339880-59339899 Msa0611220:CDS 45.0%
ATGCCCAGTCTTGATAAAGG+AGG - chr4_2:59339925-59339944 None:intergenic 45.0%
CCAATGCCCAGTCTTGATAA+AGG - chr4_2:59339928-59339947 None:intergenic 45.0%
CCTTTATCAAGACTGGGCAT+TGG + chr4_2:59339925-59339944 Msa0611220:CDS 45.0%
TGTCACTGGCCATTTGTAGA+TGG + chr4_2:59340666-59340685 Msa0611220:intron 45.0%
GTCACTGGCCATTTGTAGAT+GGG + chr4_2:59340667-59340686 Msa0611220:intron 45.0%
!! CATCCATTAGAGGCATCATG+TGG - chr4_2:59340786-59340805 None:intergenic 45.0%
CGCCAACTTTCATCCATTAG+AGG - chr4_2:59340796-59340815 None:intergenic 45.0%
GTTGGCGAGTAAAGTTTGAG+AGG + chr4_2:59340809-59340828 Msa0611220:CDS 45.0%
TTTGAGAGGGTGAGAGATGA+TGG + chr4_2:59340823-59340842 Msa0611220:CDS 45.0%
! TGAGAGATGATGGTTTCTCC+AGG + chr4_2:59340833-59340852 Msa0611220:CDS 45.0%
TTGGAAGAACAATCTCCCGT+AGG - chr4_2:59340876-59340895 None:intergenic 45.0%
!!! GTACCTTATGTTTTGGCCAG+AGG + chr4_2:59340925-59340944 Msa0611220:CDS 45.0%
ACACCTCTGGCCAAAACATA+AGG - chr4_2:59340931-59340950 None:intergenic 45.0%
CAGCAGAATTGACCACCAAT+GGG - chr4_2:59340972-59340991 None:intergenic 45.0%
ACAGCAGAATTGACCACCAA+TGG - chr4_2:59340973-59340992 None:intergenic 45.0%
!! CTGCTGTCTATCGATTTGCA+TGG + chr4_2:59340986-59341005 Msa0611220:CDS 45.0%
GTGCCAAGAGATTTCATGTC+TGG + chr4_2:59341043-59341062 Msa0611220:CDS 45.0%
CAAGATCGTGATGCAGATGT+TGG + chr4_2:59341216-59341235 Msa0611220:CDS 45.0%
CAGATGTTGGACTTCGATTG+AGG + chr4_2:59341229-59341248 Msa0611220:CDS 45.0%
TGTTTGTCAGGTAGGAAGGA+AGG + chr4_2:59341282-59341301 Msa0611220:three_prime_UTR 45.0%
GTAGGAAGGAAGGAATCTCT+AGG + chr4_2:59341292-59341311 Msa0611220:three_prime_UTR 45.0%
!! TCTAGGAAGTGTTCAGTCTC+TGG + chr4_2:59341309-59341328 Msa0611220:three_prime_UTR 45.0%
!!! TGGGTTTTTGGTGACGTGGA+GGG - chr4_2:59335052-59335071 None:intergenic 50.0%
!!! CATGTGGGTTTTTGGTGACG+TGG - chr4_2:59335056-59335075 None:intergenic 50.0%
TTACGCGTGTGTACGTGTGT+TGG - chr4_2:59335092-59335111 None:intergenic 50.0%
ATCCCAAACAAGGGCAATCC+CGG + chr4_2:59335117-59335136 Msa0611220:five_prime_UTR 50.0%
! TTCCGGGATTGCCCTTGTTT+GGG - chr4_2:59335122-59335141 None:intergenic 50.0%
ATTCCGGGATTGCCCTTGTT+TGG - chr4_2:59335123-59335142 None:intergenic 50.0%
ATTGGAGTTCCGTCGAGAGA+AGG - chr4_2:59335304-59335323 None:intergenic 50.0%
AGACGAAGAGGAAGAGGAAG+GGG - chr4_2:59335353-59335372 None:intergenic 50.0%
GAGACGAAGAGGAAGAGGAA+GGG - chr4_2:59335354-59335373 None:intergenic 50.0%
! CGCATCGATCTCCTTTCCTT+TGG - chr4_2:59335386-59335405 None:intergenic 50.0%
AAAGGAGATCGATGCGGATG+CGG + chr4_2:59335390-59335409 Msa0611220:CDS 50.0%
CACCAGGGTTCCGACAAATA+CGG - chr4_2:59335486-59335505 None:intergenic 50.0%
ATGCAGAGAATGCTCCTGCT+AGG + chr4_2:59336130-59336149 Msa0611220:CDS 50.0%
CAGAAAGCAGGAAACCATGG+AGG - chr4_2:59336368-59336387 None:intergenic 50.0%
AGAAATTGGGGGACAGGATG+CGG + chr4_2:59336449-59336468 Msa0611220:CDS 50.0%
AAGTGGACAGAAATGGTGCC+CGG + chr4_2:59336484-59336503 Msa0611220:CDS 50.0%
CTGAAAATGTTGCTGCGCGA+TGG + chr4_2:59336622-59336641 Msa0611220:CDS 50.0%
! GCAGGGTCCGGTTTTTCATT+TGG + chr4_2:59336749-59336768 Msa0611220:CDS 50.0%
CGATAGAATGGCAACTAGGG+GGG - chr4_2:59337286-59337305 None:intergenic 50.0%
!! TGGTAGCGATGCGGTGTTAT+CGG + chr4_2:59337644-59337663 Msa0611220:CDS 50.0%
GAGGGTCAATTGGAACTTCC+AGG + chr4_2:59337871-59337890 Msa0611220:CDS 50.0%
AAGGGTGAACCTTTGACTGC+AGG + chr4_2:59337987-59338006 Msa0611220:CDS 50.0%
TAGGAAAGCCACCTTCACCA+TGG - chr4_2:59338096-59338115 None:intergenic 50.0%
GGGTATTTCCCCTGATGTGT+GGG + chr4_2:59338132-59338151 Msa0611220:CDS 50.0%
TATTTCCCCTGATGTGTGGG+TGG + chr4_2:59338135-59338154 Msa0611220:CDS 50.0%
! GAATGGCAGGTTTTGCGGAA+TGG + chr4_2:59338393-59338412 Msa0611220:intron 50.0%
! ATGGCAGGTTTTGCGGAATG+GGG + chr4_2:59338395-59338414 Msa0611220:intron 50.0%
TGTGCACAAACATGCTCGCA+GGG + chr4_2:59338485-59338504 Msa0611220:CDS 50.0%
CAGGGTATGGTTCCATTTGC+TGG + chr4_2:59338965-59338984 Msa0611220:CDS 50.0%
CACTAATGCAGATGCTGGAG+AGG + chr4_2:59339006-59339025 Msa0611220:CDS 50.0%
CGAGGAACTCACTCAGAATC+AGG - chr4_2:59339052-59339071 None:intergenic 50.0%
!! TGTCTTTGGGGTGGAGAAAG+AGG + chr4_2:59339149-59339168 Msa0611220:intron 50.0%
!! GTCTTTGGGGTGGAGAAAGA+GGG + chr4_2:59339150-59339169 Msa0611220:intron 50.0%
! TGGAGAAAGAGGGCATGATG+TGG + chr4_2:59339160-59339179 Msa0611220:intron 50.0%
AGAGAAGCCCAATCAGCACT+GGG - chr4_2:59339847-59339866 None:intergenic 50.0%
AAGAGAAGCCCAATCAGCAC+TGG - chr4_2:59339848-59339867 None:intergenic 50.0%
TCATCCACCGGAACTCTCAT+TGG - chr4_2:59339890-59339909 None:intergenic 50.0%
AATCGCTACCAATGCACAGC+AGG - chr4_2:59340184-59340203 None:intergenic 50.0%
TCAGTCTCTCTTTCCGCCAT+TGG + chr4_2:59340624-59340643 Msa0611220:intron 50.0%
! ATGGGTTATCTGTGTCCCCA+AGG + chr4_2:59340685-59340704 Msa0611220:intron 50.0%
GGACCACATGATGCCTCTAA+TGG + chr4_2:59340780-59340799 Msa0611220:CDS 50.0%
!! AAGTGCTGGAAACACACCTC+TGG - chr4_2:59340944-59340963 None:intergenic 50.0%
! AGAGGTGTGTTTCCAGCACT+TGG + chr4_2:59340943-59340962 Msa0611220:CDS 50.0%
GAGGTGTGTTTCCAGCACTT+GGG + chr4_2:59340944-59340963 Msa0611220:CDS 50.0%
CGTGATGACCGGTATCTGAT+TGG + chr4_2:59341090-59341109 Msa0611220:CDS 50.0%
ATGACCGGTATCTGATTGGC+CGG + chr4_2:59341094-59341113 Msa0611220:CDS 50.0%
CTCCGAAGTTATGCAACCTC+CGG - chr4_2:59341116-59341135 None:intergenic 50.0%
! TGCAACTTCTACAGGAGTGC+AGG + chr4_2:59341161-59341180 Msa0611220:CDS 50.0%
GAGGCACGTAAATCAACAGG+CGG + chr4_2:59341248-59341267 Msa0611220:CDS 50.0%
!!! GTGGGTTTTTGGTGACGTGG+AGG - chr4_2:59335053-59335072 None:intergenic 55.0%
GAAAGAGAGGGGTTGCCGTA+GGG - chr4_2:59335156-59335175 None:intergenic 55.0%
AGAAAGAGAGGGGTTGCCGT+AGG - chr4_2:59335157-59335176 None:intergenic 55.0%
AGAGGAAGAGGAAGGGGAAG+AGG - chr4_2:59335347-59335366 None:intergenic 55.0%
GGAGACGAAGAGGAAGAGGA+AGG - chr4_2:59335355-59335374 None:intergenic 55.0%
TCTTCCTCTTCGTCTCCACG+CGG + chr4_2:59335358-59335377 Msa0611220:CDS 55.0%
TCCACGCGGTTCCAAAGGAA+AGG + chr4_2:59335372-59335391 Msa0611220:CDS 55.0%
!! TCCTTTCCTTTGGAACCGCG+TGG - chr4_2:59335376-59335395 None:intergenic 55.0%
TGCCGTATTTGTCGGAACCC+TGG + chr4_2:59335481-59335500 Msa0611220:CDS 55.0%
TAGCAACGCTCGTCAATGCG+AGG + chr4_2:59335594-59335613 Msa0611220:CDS 55.0%
AGTGGACAGAAATGGTGCCC+GGG + chr4_2:59336485-59336504 Msa0611220:CDS 55.0%
GAAGATGCTGGTGCAGCACA+AGG + chr4_2:59336564-59336583 Msa0611220:CDS 55.0%
TGGTGCAGCACAAGGAGTTG+CGG + chr4_2:59336572-59336591 Msa0611220:CDS 55.0%
GATGGTCTGGATGACGCTGA+TGG + chr4_2:59336690-59336709 Msa0611220:CDS 55.0%
! ACTTGTTGGCATGCAGGGTC+CGG + chr4_2:59336737-59336756 Msa0611220:CDS 55.0%
!! TAGCGATGCGGTGTTATCGG+TGG + chr4_2:59337647-59337666 Msa0611220:CDS 55.0%
! GGGGTATTTCCCCTGATGTG+TGG + chr4_2:59338131-59338150 Msa0611220:CDS 55.0%
CTGCGAGCATGTTTGTGCAC+AGG - chr4_2:59338486-59338505 None:intergenic 55.0%
CTGTGCACAAACATGCTCGC+AGG + chr4_2:59338484-59338503 Msa0611220:CDS 55.0%
CCAGGGCAGAGTTGAAGACA+AGG - chr4_2:59339376-59339395 None:intergenic 55.0%
CCTTGTCTTCAACTCTGCCC+TGG + chr4_2:59339373-59339392 Msa0611220:CDS 55.0%
GTGATCTGGACTGCTGTTGC+TGG + chr4_2:59339588-59339607 Msa0611220:CDS 55.0%
TGTGCCAATGAGAGTTCCGG+TGG + chr4_2:59339883-59339902 Msa0611220:CDS 55.0%
TGATGGTTTCTCCAGGCTGC+AGG + chr4_2:59340840-59340859 Msa0611220:CDS 55.0%
GATGGTTTCTCCAGGCTGCA+GGG + chr4_2:59340841-59340860 Msa0611220:CDS 55.0%
TGCAGGGTCTTTGGGTCCTA+CGG + chr4_2:59340857-59340876 Msa0611220:CDS 55.0%
TCCAGCACTTGGGTACCCAT+TGG + chr4_2:59340954-59340973 Msa0611220:CDS 55.0%
ACCAATGGGTACCCAAGTGC+TGG - chr4_2:59340958-59340977 None:intergenic 55.0%
AGCACTTGGGTACCCATTGG+TGG + chr4_2:59340957-59340976 Msa0611220:CDS 55.0%
ACCTCCGGCCAATCAGATAC+CGG - chr4_2:59341101-59341120 None:intergenic 55.0%
GGCCGGAGGTTGCATAACTT+CGG + chr4_2:59341111-59341130 Msa0611220:CDS 55.0%
!! GGAAGTGTTCAGTCTCTGGC+TGG + chr4_2:59341313-59341332 Msa0611220:three_prime_UTR 55.0%
TGTTCAGTCTCTGGCTGGCA+TGG + chr4_2:59341318-59341337 Msa0611220:three_prime_UTR 55.0%
GAACCACCGCCTTCTCTCGA+CGG + chr4_2:59335292-59335311 Msa0611220:CDS 60.0%
GGAGTTCCGTCGAGAGAAGG+CGG - chr4_2:59335301-59335320 None:intergenic 60.0%
GAGGAAGGGGAAGAGGAGGA+GGG - chr4_2:59335340-59335359 None:intergenic 60.0%
AGAGGAAGGGGAAGAGGAGG+AGG - chr4_2:59335341-59335360 None:intergenic 60.0%
GGAAGAGGAAGGGGAAGAGG+AGG - chr4_2:59335344-59335363 None:intergenic 60.0%
GCGTGGAGACGAAGAGGAAG+AGG - chr4_2:59335359-59335378 None:intergenic 60.0%
TCGTCTCCACGCGGTTCCAA+AGG + chr4_2:59335367-59335386 Msa0611220:CDS 60.0%
!! AGATGGCGGTGCTGTCGATG+CGG - chr4_2:59335422-59335441 None:intergenic 60.0%
CACGCGCACGGATACCGTAA+CGG - chr4_2:59335520-59335539 None:intergenic 60.0%
ATACTGCCGCTACACGCGCA+CGG - chr4_2:59335532-59335551 None:intergenic 60.0%
GGAGTTTCGGTGAAGCCCAG+AGG + chr4_2:59336298-59336317 Msa0611220:CDS 60.0%
GAAATGGTGCCCGGGTTGCT+AGG + chr4_2:59336493-59336512 Msa0611220:CDS 60.0%
GGTGCAGCACAAGGAGTTGC+GGG + chr4_2:59336573-59336592 Msa0611220:CDS 60.0%
GTGCAGCACAAGGAGTTGCG+GGG + chr4_2:59336574-59336593 Msa0611220:CDS 60.0%
TGCAGCACAAGGAGTTGCGG+GGG + chr4_2:59336575-59336594 Msa0611220:CDS 60.0%
GATGCAAGCAGCACGTCTCG+AGG + chr4_2:59336647-59336666 Msa0611220:CDS 60.0%
GGATGACGCTGATGGAGCAG+AGG + chr4_2:59336698-59336717 Msa0611220:CDS 60.0%
GGTGGCAAGCCAGAAACACC+AGG - chr4_2:59336967-59336986 None:intergenic 60.0%
TTCCCCTGATGTGTGGGTGG+TGG + chr4_2:59338138-59338157 Msa0611220:CDS 60.0%
AGCCACCACCCACACATCAG+GGG - chr4_2:59338143-59338162 None:intergenic 60.0%
GAGCCACCACCCACACATCA+GGG - chr4_2:59338144-59338163 None:intergenic 60.0%
TTGGATCAGCCGGATCCCGA+AGG - chr4_2:59338431-59338450 None:intergenic 60.0%
ACAGCAGTTGGTTGGGCGCT+TGG + chr4_2:59338830-59338849 Msa0611220:CDS 60.0%
! ACAAGCAGGGGTGCACGATC+AGG + chr4_2:59338946-59338965 Msa0611220:CDS 60.0%
! CAAGCAGGGGTGCACGATCA+GGG + chr4_2:59338947-59338966 Msa0611220:CDS 60.0%
! AGGGGTGCACGATCAGGGTA+TGG + chr4_2:59338952-59338971 Msa0611220:CDS 60.0%
TCTCCAGGCTGCAGGGTCTT+TGG + chr4_2:59340848-59340867 Msa0611220:CDS 60.0%
CTCCAGGCTGCAGGGTCTTT+GGG + chr4_2:59340849-59340868 Msa0611220:CDS 60.0%
GCAGGGTCTTTGGGTCCTAC+GGG + chr4_2:59340858-59340877 Msa0611220:CDS 60.0%
! ACCGGTATCTGATTGGCCGG+AGG + chr4_2:59341097-59341116 Msa0611220:CDS 60.0%
GATCTCCATCGCCGAGTCCG+CGG - chr4_2:59335266-59335285 None:intergenic 65.0%
GTTCCGTCGAGAGAAGGCGG+TGG - chr4_2:59335298-59335317 None:intergenic 65.0%
! AGAGGAGGAGGGTGTGGTGG+CGG - chr4_2:59335329-59335348 None:intergenic 65.0%
! GGAAGAGGAGGAGGGTGTGG+TGG - chr4_2:59335332-59335351 None:intergenic 65.0%
AGGGGAAGAGGAGGAGGGTG+TGG - chr4_2:59335335-59335354 None:intergenic 65.0%
GGAACCGCGTGGAGACGAAG+AGG - chr4_2:59335365-59335384 None:intergenic 65.0%
CGGTATCCGTGCGCGTGTAG+CGG + chr4_2:59335523-59335542 Msa0611220:CDS 65.0%
ATGGTGCCCGGGTTGCTAGG+AGG + chr4_2:59336496-59336515 Msa0611220:CDS 65.0%
AGCAGGCCTCCTAGCAACCC+GGG - chr4_2:59336505-59336524 None:intergenic 65.0%
CAGCAGGCCTCCTAGCAACC+CGG - chr4_2:59336506-59336525 None:intergenic 65.0%
CGAGCCACCACCCACACATC+AGG - chr4_2:59338145-59338164 None:intergenic 65.0%
GACCCAAAGACCCTGCAGCC+TGG - chr4_2:59340854-59340873 None:intergenic 65.0%
!! GAGGGTGTGGTGGCGGCGAT+TGG - chr4_2:59335322-59335341 None:intergenic 70.0%
!! TGGCGGTGCTGTCGATGCGG+TGG - chr4_2:59335419-59335438 None:intergenic 70.0%
CGGGTTGCTAGGAGGCCTGC+TGG + chr4_2:59336504-59336523 Msa0611220:CDS 70.0%
GCACAAGGAGTTGCGGGGGC+AGG + chr4_2:59336579-59336598 Msa0611220:CDS 70.0%
!! CTCCACCGACTCGGTCGCCG+CGG + chr4_2:59335246-59335265 Msa0611220:five_prime_UTR 75.0%
CGAGTCCGCGGCGACCGAGT+CGG - chr4_2:59335254-59335273 None:intergenic 75.0%
!! CGACTCGGTCGCCGCGGACT+CGG + chr4_2:59335252-59335271 Msa0611220:five_prime_UTR 75.0%
! GTCCGCGGCGACCGAGTCGG+TGG - chr4_2:59335251-59335270 None:intergenic 80.0%
! GGTCGCCGCGGACTCGGCGA+TGG + chr4_2:59335258-59335277 Msa0611220:exon 80.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 59334920 59341701 59334920 ID=Msa0611220;Name=Msa0611220
chr4_2 mRNA 59334920 59341701 59334920 ID=Msa0611220-mRNA-1;Parent=Msa0611220;Name=Msa0611220-mRNA-1;_AED=0.02;_eAED=0.02;_QI=357|1|1|1|1|1|9|426|1112
chr4_2 exon 59334920 59335615 59334920 ID=Msa0611220-mRNA-1:exon:15707;Parent=Msa0611220-mRNA-1
chr4_2 exon 59336096 59336788 59336096 ID=Msa0611220-mRNA-1:exon:15708;Parent=Msa0611220-mRNA-1
chr4_2 exon 59337546 59338313 59337546 ID=Msa0611220-mRNA-1:exon:15709;Parent=Msa0611220-mRNA-1
chr4_2 exon 59338402 59338613 59338402 ID=Msa0611220-mRNA-1:exon:15710;Parent=Msa0611220-mRNA-1
chr4_2 exon 59338709 59339059 59338709 ID=Msa0611220-mRNA-1:exon:15711;Parent=Msa0611220-mRNA-1
chr4_2 exon 59339316 59339476 59339316 ID=Msa0611220-mRNA-1:exon:15712;Parent=Msa0611220-mRNA-1
chr4_2 exon 59339559 59339722 59339559 ID=Msa0611220-mRNA-1:exon:15713;Parent=Msa0611220-mRNA-1
chr4_2 exon 59339833 59339979 59339833 ID=Msa0611220-mRNA-1:exon:15714;Parent=Msa0611220-mRNA-1
chr4_2 exon 59340772 59341701 59340772 ID=Msa0611220-mRNA-1:exon:15715;Parent=Msa0611220-mRNA-1
chr4_2 five_prime_UTR 59334920 59335276 59334920 ID=Msa0611220-mRNA-1:five_prime_utr;Parent=Msa0611220-mRNA-1
chr4_2 CDS 59335277 59335615 59335277 ID=Msa0611220-mRNA-1:cds;Parent=Msa0611220-mRNA-1
chr4_2 CDS 59336096 59336788 59336096 ID=Msa0611220-mRNA-1:cds;Parent=Msa0611220-mRNA-1
chr4_2 CDS 59337546 59338313 59337546 ID=Msa0611220-mRNA-1:cds;Parent=Msa0611220-mRNA-1
chr4_2 CDS 59338402 59338613 59338402 ID=Msa0611220-mRNA-1:cds;Parent=Msa0611220-mRNA-1
chr4_2 CDS 59338709 59339059 59338709 ID=Msa0611220-mRNA-1:cds;Parent=Msa0611220-mRNA-1
chr4_2 CDS 59339316 59339476 59339316 ID=Msa0611220-mRNA-1:cds;Parent=Msa0611220-mRNA-1
chr4_2 CDS 59339559 59339722 59339559 ID=Msa0611220-mRNA-1:cds;Parent=Msa0611220-mRNA-1
chr4_2 CDS 59339833 59339979 59339833 ID=Msa0611220-mRNA-1:cds;Parent=Msa0611220-mRNA-1
chr4_2 CDS 59340772 59341275 59340772 ID=Msa0611220-mRNA-1:cds;Parent=Msa0611220-mRNA-1
chr4_2 three_prime_UTR 59341276 59341701 59341276 ID=Msa0611220-mRNA-1:three_prime_utr;Parent=Msa0611220-mRNA-1
Gene Sequence

>Msa0611220

ATGGAGATCGCTAACGAACCACCGCCTTCTCTCGACGGAACTCCAATCGCCGCCACCACACCCTCCTCCTCTTCCCCTTCCTCTTCCTCTTCGTCTCCACGCGGTTCCAAAGGAAAGGAGATCGATGCGGATGCGGTCGCCACCGCATCGACAGCACCGCCATCTGCAAAATACGATGACGACGATGAAGATGAAGAGGATGTTTGCCGTATTTGTCGGAACCCTGGTGATGCTGATAATCCGTTACGGTATCCGTGCGCGTGTAGCGGCAGTATCAAATTTGTTCATCAAGATTGTCTCCTTCAGTGGCTTAATCATAGCAACGCTCGTCAATGCGAGGTTTGCAAGCATCCATTTTCCTTCTCACCTGTTTATGCAGAGAATGCTCCTGCTAGGTTGCCTTTTCAAGAGTTTGTGGTGGGAATGGCGATGAAAGCTTGTCATGTTCTGCAGTTCTTTGTGCGTCTGAGTTTTGTGCTGTCTGTGTGGCTCTTAATTATACCTTTCATAACATTCTGGATATGGAGGTTAGCTTTTGTGAGGAGTTTCGGTGAAGCCCAGAGGTTATTCTTGAATCATTTATCAACGGCGGTTATTCTGACTGATTGCCTCCATGGTTTCCTGCTTTCTGCAAGCATTGTCTTCATTTTTCTTGGGGCTACTTCTTTGAGAGATTACTTTAGGCATTTAAGAGAAATTGGGGGACAGGATGCGGATAGAGAAGATGAAGTGGACAGAAATGGTGCCCGGGTTGCTAGGAGGCCTGCTGGACAAGCTAATCGTAATGTTAATGGTGATGCAAATGGAGAAGATGCTGGTGCAGCACAAGGAGTTGCGGGGGCAGGTCAAGTAATTAGAAGGAATGCTGAAAATGTTGCTGCGCGATGGGAGATGCAAGCAGCACGTCTCGAGGCGCATGTTGAACAGATGTTTGATGGTCTGGATGACGCTGATGGAGCAGAGGATGTACCCTTTGATGAACTTGTTGGCATGCAGGGTCCGGTTTTTCATTTGGTTGAAAATGCATTTACGGTGCTGGCAAGCAATATGATTTTCCTTGGAGTTGTAATCTTTCTGCCCTTCTCATTGGGTCGCATAATTCTTCATTATCTATCATGGTTCTTTTCAACTGGTAGCGATGCGGTGTTATCGGTGGTAGTCCCACCTACAGACACTTCTCTTTCCCTAGCCAATATTACATTAAAAAATGCATTAACAGCTGTTCAAAATTTATCAACTGCTACTCAAGAAAGTGGATCAGTTGGTCAGATTGCAGAAATGCTAAAAGTGAATGCAAGTGAATTGAGTGAAATGTCGAACAACATAACTGCATCTGTTTCAGATGATCTCTTGAAAGGAGGGTCAATTGGAACTTCCAGGATTTCTGATGTTACTACTTTGGCAGTTGGATATATTTTCCTATCGACTCTAATTTTCTGCTACTTCGGTATTGTTGCGTTAATTCGCTACACAAAGGGTGAACCTTTGACTGCAGGAAGATTTTATGGTATTGCTTCTATAGCAGAGACAATTCCATCTCTCTTCAGGCAGTTTTTAGCAGCAATGAGGCATTTGATGACCATGGTGAAGGTGGCTTTCCTATTAGTTATTGAATTAGGGGTATTTCCCCTGATGTGTGGGTGGTGGCTCGATGTTTGCACCATACAGATGTTTGGGAAGACAATGGTTCACAGAGCTCAGTTCTTCTCTGCTTCTCCTTTAGCAAGCTCATTGGCTCATTGGGTTGTAGGGATCGTGTACATGCTACAAATTAGCATATTTGTCAGCCTTCTTAGAGGGGTTTTGCGGAATGGGGTTTTGTACTTCCTTCGGGATCCGGCTGATCCAAACTATAATCCATTCCGTGATCTGATAGATGATCCTGTGCACAAACATGCTCGCAGGGTTTTGTTATCTGTTGCGGTTTATGGGAGTTTGATTGTTATGCTGGTATTTTTGCCAGTTAAACTTGCAATGCGGATGGCACCTTCCATTTTTCCACTTGAAATATTGCTATCTGATCCCTTCACCGAAATTCCAGCTAACATGCTTCTCTTTCAGATCTGTATACCATTTGCTATTGAGCATTTTAAACTCAGGACAACTATCAAATCCCTTCTTCGCTATTGGTTTACAGCAGTTGGTTGGGCGCTTGGTTTAACTGATTTCTTATTGCCTAGACCTGATGACAATGGTAATCAAGAAAATGGAAATGGGGAGCGAGGTAGGCAGGAAAGGTTACAGATAGTACAAGCAGGGGTGCACGATCAGGGTATGGTTCCATTTGCTGGCGATGATTTGAACAGAGTCACTAATGCAGATGCTGGAGAGGATTACGACAGCGACGAACAACCTGATTCTGACAGTTATGCCTTTGCACTTCGCATTGTTCTTCTGCTGGTCATTGCTTGGATGACACTCCTTGTCTTCAACTCTGCCCTGGTAGTTGTACCAATATCACTGGGAAGGATACTTTTCAACTCCATTCCTCGTCTTCCTATAACTCATGGCATTAAGTGCAATGATCTGTATGCCTTCATCATTGGAAGTTATGTGATCTGGACTGCTGTTGCTGGAGTTAGATACTCAATCGAGCAAATTAGAAAACGGAGGACTTCAGTTTTGTTGAACCAAATTTGGAAGTGGTGTAGCATTGTTGTCAAGAGTTCTGCCCTTTTGTCTATATGGATATTTGTCATCCCAGTGCTGATTGGGCTTCTCTTTGAGCTTTTGGTCATTGTGCCAATGAGAGTTCCGGTGGATGAAAGTCCAGTATTCCTCCTTTATCAAGACTGGGCATTGGGCCTTATATTTCTCAAGATATGGACTAGATTGGTTATGTTGGACCACATGATGCCTCTAATGGATGAAAGTTGGCGAGTAAAGTTTGAGAGGGTGAGAGATGATGGTTTCTCCAGGCTGCAGGGTCTTTGGGTCCTACGGGAGATTGTTCTTCCAATCATAATGAAACTATTGACAGCGTTATGTGTACCTTATGTTTTGGCCAGAGGTGTGTTTCCAGCACTTGGGTACCCATTGGTGGTCAATTCTGCTGTCTATCGATTTGCATGGTTGGGATGCCTCTCTTTCAGTTTCGTGTGTTTTTGTGCCAAGAGATTTCATGTCTGGTTCACAAATCTCCACAATTCAATTCGTGATGACCGGTATCTGATTGGCCGGAGGTTGCATAACTTCGGAGAACATGTTGAGAAAGCAAATGAAGCTGCAACTTCTACAGGAGTGCAGGATGCTATTTTACTTGGTCCAAATATAAATCAACAAGATCGTGATGCAGATGTTGGACTTCGATTGAGGCACGTAAATCAACAGGCGGTCTGA
Protein sequence

>Msa0611220

MEIANEPPPSLDGTPIAATTPSSSSPSSSSSSPRGSKGKEIDADAVATASTAPPSAKYDDDDEDEEDVCRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHPFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFVRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLFLNHLSTAVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREIGGQDADREDEVDRNGARVARRPAGQANRNVNGDANGEDAGAAQGVAGAGQVIRRNAENVAARWEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFLPFSLGRIILHYLSWFFSTGSDAVLSVVVPPTDTSLSLANITLKNALTAVQNLSTATQESGSVGQIAEMLKVNASELSEMSNNITASVSDDLLKGGSIGTSRISDVTTLAVGYIFLSTLIFCYFGIVALIRYTKGEPLTAGRFYGIASIAETIPSLFRQFLAAMRHLMTMVKVAFLLVIELGVFPLMCGWWLDVCTIQMFGKTMVHRAQFFSASPLASSLAHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMAPSIFPLEILLSDPFTEIPANMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTDFLLPRPDDNGNQENGNGERGRQERLQIVQAGVHDQGMVPFAGDDLNRVTNADAGEDYDSDEQPDSDSYAFALRIVLLLVIAWMTLLVFNSALVVVPISLGRILFNSIPRLPITHGIKCNDLYAFIIGSYVIWTAVAGVRYSIEQIRKRRTSVLLNQIWKWCSIVVKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLMDESWRVKFERVRDDGFSRLQGLWVLREIVLPIIMKLLTALCVPYVLARGVFPALGYPLVVNSAVYRFAWLGCLSFSFVCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNFGEHVEKANEAATSTGVQDAILLGPNINQQDRDADVGLRLRHVNQQAV*