Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0310450 | XP_003593202.2 | 93.958 | 331 | 18 | 2 | 1 | 329 | 1 | 331 | 0.0 | 625 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0310450 | sp|Q9SH88|RRS1_ARATH | 60.308 | 325 | 120 | 3 | 1 | 324 | 1 | 317 | 3.54e-129 | 374 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0310450 | Msa0786650 | 0.801102 | 1.054999e-48 | -8.615850e-47 |
| Msa0310450 | Msa1372270 | 0.906754 | 1.058490e-80 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0310450 | MtrunA17_Chr2g0279161 | 93.958 | 331 | 18 | 2 | 1 | 329 | 1 | 331 | 0.0 | 625 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0310450 | AT2G37990.1 | 60.308 | 325 | 120 | 3 | 1 | 324 | 1 | 317 | 3.60e-130 | 374 |
Find 84 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCAAAATTACTGTGCTTT+TGG | 0.169446 | 2_4:-5239610 | None:intergenic |
| GGCCAAAACCTCCTACTAAA+TGG | 0.206025 | 2_4:+5236824 | Msa0310450:CDS |
| CGATTCTTTCCTTTATGTTT+TGG | 0.214740 | 2_4:-5239122 | None:intergenic |
| TCCCATTTAGTAGGAGGTTT+TGG | 0.249068 | 2_4:-5236826 | None:intergenic |
| CCTTAAATGACAATATAAAA+TGG | 0.282907 | 2_4:-5239717 | None:intergenic |
| GAGTATATCATGATTATTCT+TGG | 0.294298 | 2_4:-5239346 | None:intergenic |
| CTCGGGGTAATCTGGTGGTT+GGG | 0.302345 | 2_4:-5236677 | None:intergenic |
| GTGAAAGAGTGTTTACAAAA+AGG | 0.307046 | 2_4:+5236567 | Msa0310450:CDS |
| GGTGCGTGGGTTCCTGTTAT+AGG | 0.317411 | 2_4:-5238993 | None:intergenic |
| AAATTGAATCAGAAAGAAAA+TGG | 0.323039 | 2_4:+5236343 | Msa0310450:exon |
| GTAGGTTTAGCCTCAATAAT+AGG | 0.359792 | 2_4:-5237075 | None:intergenic |
| ATATCCATGTCTGCGTTTCC+AGG | 0.400440 | 2_4:-5237025 | None:intergenic |
| CCTTCGATTTATCATTCCTT+CGG | 0.407735 | 2_4:-5239519 | None:intergenic |
| GCGACATCTTTGCCTATAAC+AGG | 0.413812 | 2_4:+5238981 | Msa0310450:CDS |
| CCCTCTACTCAAGATGTTGA+AGG | 0.416054 | 2_4:+5236633 | Msa0310450:CDS |
| GCAAACAGGTCCCATTTAGT+AGG | 0.428944 | 2_4:-5236835 | None:intergenic |
| TCTCGGGGTAATCTGGTGGT+TGG | 0.429457 | 2_4:-5236678 | None:intergenic |
| CTACCGGTAGCAGAAGGAAC+AGG | 0.433565 | 2_4:+5239270 | Msa0310450:CDS |
| GGTTGACCTCGGTAATCTAA+TGG | 0.449578 | 2_4:+5236400 | Msa0310450:CDS |
| CAAGTTTATGATGAACCATC+TGG | 0.452578 | 2_4:+5237000 | Msa0310450:CDS |
| GCCAAAACCTCCTACTAAAT+GGG | 0.459534 | 2_4:+5236825 | Msa0310450:CDS |
| GAAAAGCCTCCAAAACATAA+AGG | 0.462069 | 2_4:+5239113 | Msa0310450:CDS |
| TCGGGGTAATCTGGTGGTTG+GGG | 0.468261 | 2_4:-5236676 | None:intergenic |
| TTGGCAAAAGGATCCTCGTC+TGG | 0.469582 | 2_4:-5237786 | None:intergenic |
| ACCCCTGTTCCTTCTGCTAC+CGG | 0.474967 | 2_4:-5239273 | None:intergenic |
| AGGAACAGGGGTAGGATCAA+AGG | 0.493785 | 2_4:+5239284 | Msa0310450:CDS |
| TCAATTTCAGAGAGTTGAAA+CGG | 0.493965 | 2_4:-5236327 | None:intergenic |
| GCCTCAACTGCCACAGCTAG+TGG | 0.494544 | 2_4:+5239062 | Msa0310450:CDS |
| GGCTGCTAAGAATTTGTTCG+AGG | 0.502076 | 2_4:+5236379 | Msa0310450:CDS |
| AAGGTTACCAAGGATGAATT+AGG | 0.504736 | 2_4:+5239023 | Msa0310450:CDS |
| CACAGTGACCAATGTGAAGA+AGG | 0.507110 | 2_4:+5239489 | Msa0310450:CDS |
| CTGCGTTTCCAGGTTCCAGA+TGG | 0.508540 | 2_4:-5237015 | None:intergenic |
| TACACTGCCTAATTCATCCT+TGG | 0.511559 | 2_4:-5239030 | None:intergenic |
| TGTGGTGCCTGGTGTTGTGA+TGG | 0.514224 | 2_4:-5239743 | None:intergenic |
| GATGAATTAGGCAGTGTAGC+AGG | 0.517015 | 2_4:+5239035 | Msa0310450:CDS |
| AAGAGAAAAGAAAACAAAAG+AGG | 0.517890 | 2_4:+5237807 | Msa0310450:CDS |
| ATGATGAACCATCTGGAACC+TGG | 0.518041 | 2_4:+5237007 | Msa0310450:CDS |
| AACCCACGCACCACAAAAGA+AGG | 0.519084 | 2_4:+5239004 | Msa0310450:CDS |
| AAAGAAAATGGAGATTGAGA+TGG | 0.520851 | 2_4:+5236355 | Msa0310450:exon |
| AGAAGCTATTCCTATTATTG+AGG | 0.529821 | 2_4:+5237065 | Msa0310450:CDS |
| CAAAGTTTGGGGCTTTACCT+AGG | 0.530560 | 2_4:+5237880 | Msa0310450:CDS |
| GAAAATGGAGATTGAGATGG+AGG | 0.531102 | 2_4:+5236358 | Msa0310450:exon |
| ACCACTAGCTGTGGCAGTTG+AGG | 0.531694 | 2_4:-5239063 | None:intergenic |
| CATACCCTTCTCAACAATCC+AGG | 0.537224 | 2_4:+5236441 | Msa0310450:CDS |
| GTATAATCACTTGTGGTGCC+TGG | 0.537491 | 2_4:-5239754 | None:intergenic |
| AACAGGTCCCATTTAGTAGG+AGG | 0.542260 | 2_4:-5236832 | None:intergenic |
| ACCATGCAGCCATGTTCAGT+TGG | 0.543010 | 2_4:+5238956 | Msa0310450:intron |
| ACATACCTGGATTGTTGAGA+AGG | 0.562948 | 2_4:-5236446 | None:intergenic |
| CCTTCAACATCTTGAGTAGA+GGG | 0.564606 | 2_4:-5236633 | None:intergenic |
| ATTTCAAGTATAATCACTTG+TGG | 0.569183 | 2_4:-5239761 | None:intergenic |
| ATGTCGCGGCCAACTGAACA+TGG | 0.570065 | 2_4:-5238965 | None:intergenic |
| TCAACTGCCACAGCTAGTGG+TGG | 0.576419 | 2_4:+5239065 | Msa0310450:CDS |
| ACCTTCAACATCTTGAGTAG+AGG | 0.587465 | 2_4:-5236634 | None:intergenic |
| AACAAATCAAATGAGTGATG+AGG | 0.589062 | 2_4:-5236304 | None:intergenic |
| ACAAATCAAATGAGTGATGA+GGG | 0.590577 | 2_4:-5236303 | None:intergenic |
| TGGAATTACTTACCATCGGT+AGG | 0.591410 | 2_4:-5237093 | None:intergenic |
| AAGGCTTCCATCACAACACC+AGG | 0.597161 | 2_4:+5239736 | Msa0310450:three_prime_UTR |
| CATACCTGGATTGTTGAGAA+GGG | 0.605884 | 2_4:-5236445 | None:intergenic |
| GGAACCTGGAAACGCAGACA+TGG | 0.610484 | 2_4:+5237021 | Msa0310450:CDS |
| TACCGGTAGCAGAAGGAACA+GGG | 0.611779 | 2_4:+5239271 | Msa0310450:CDS |
| AGGGGTAGGATCAAAGGAGA+GGG | 0.618168 | 2_4:+5239290 | Msa0310450:CDS |
| AGGCATTATTAAGCGGAACA+AGG | 0.619070 | 2_4:+5236972 | Msa0310450:intron |
| CAACTGCCACAGCTAGTGGT+GGG | 0.621815 | 2_4:+5239066 | Msa0310450:CDS |
| TAGTTCCTACCGGTAGCAGA+AGG | 0.622035 | 2_4:+5239264 | Msa0310450:intron |
| GTTATGCAGGCATTATTAAG+CGG | 0.622663 | 2_4:+5236965 | Msa0310450:intron |
| CTGTTCCTTCTGCTACCGGT+AGG | 0.633674 | 2_4:-5239269 | None:intergenic |
| CCGAAGGAATGATAAATCGA+AGG | 0.634190 | 2_4:+5239519 | Msa0310450:CDS |
| AAACTTCCCACCACTAGCTG+TGG | 0.634673 | 2_4:-5239072 | None:intergenic |
| GTATGAATGATGAGAGTCGA+AGG | 0.637332 | 2_4:-5236423 | None:intergenic |
| AATTTGTTCGAGGTTGACCT+CGG | 0.638182 | 2_4:+5236389 | Msa0310450:CDS |
| GTAGCAGAAGGAACAGGGGT+AGG | 0.639483 | 2_4:+5239276 | Msa0310450:CDS |
| TGATATACTCAATGTTAACA+AGG | 0.643030 | 2_4:+5239359 | Msa0310450:CDS |
| ATTATACTTGAAATTAACAG+AGG | 0.643088 | 2_4:+5239770 | Msa0310450:three_prime_UTR |
| CAGGGGTAGGATCAAAGGAG+AGG | 0.644223 | 2_4:+5239289 | Msa0310450:CDS |
| ATTGAGGCTAAACCTACCGA+TGG | 0.658675 | 2_4:+5237081 | Msa0310450:CDS |
| TGTTATAGGCAAAGATGTCG+CGG | 0.661140 | 2_4:-5238979 | None:intergenic |
| TGAAGAAGGAGAAAAGCCGA+AGG | 0.662135 | 2_4:+5239503 | Msa0310450:CDS |
| ACATAAAGGAAAGAATCGAA+AGG | 0.670337 | 2_4:+5239127 | Msa0310450:CDS |
| ACCACAAAAGAAGGTTACCA+AGG | 0.679267 | 2_4:+5239013 | Msa0310450:CDS |
| GGGGCAGACAATTGAACGAG+GGG | 0.691274 | 2_4:-5236657 | None:intergenic |
| TGGGGCAGACAATTGAACGA+GGG | 0.704031 | 2_4:-5236658 | None:intergenic |
| CGAAGGCCATTAGATTACCG+AGG | 0.720268 | 2_4:-5236406 | None:intergenic |
| TTGGGGCAGACAATTGAACG+AGG | 0.741722 | 2_4:-5236659 | None:intergenic |
| ACCGGTAGCAGAAGGAACAG+GGG | 0.747731 | 2_4:+5239272 | Msa0310450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACTATTTATAAATGTTAA+GGG | + | chr2_4:5237614-5237633 | Msa0310450:intron | 10.0% |
| !! | AAAAAATTGTAAATTCTTTA+TGG | - | chr2_4:5238353-5238372 | None:intergenic | 10.0% |
| !!! | ACTTTTGTTATTATTCTTTT+TGG | + | chr2_4:5237495-5237514 | Msa0310450:intron | 15.0% |
| !!! | CTTTTGTTATTATTCTTTTT+GGG | + | chr2_4:5237496-5237515 | Msa0310450:intron | 15.0% |
| !! | CAAACTATTTATAAATGTTA+AGG | + | chr2_4:5237613-5237632 | Msa0310450:intron | 15.0% |
| !! | TTGATAAAAATGAGAAAAAT+CGG | + | chr2_4:5237835-5237854 | Msa0310450:CDS | 15.0% |
| !! | TTATTTACAAATCTATAGAT+TGG | - | chr2_4:5238297-5238316 | None:intergenic | 15.0% |
| !!! | ACATTTTAACTTTATCTATA+AGG | + | chr2_4:5238456-5238475 | Msa0310450:intron | 15.0% |
| !!! | ACAGTAATTTTGATTTTTTA+TGG | + | chr2_4:5239618-5239637 | Msa0310450:exon | 15.0% |
| !! | AAATTGAATCAGAAAGAAAA+TGG | + | chr2_4:5236343-5236362 | Msa0310450:exon | 20.0% |
| !! | ATTGAAAAATCAAATTGAAG+TGG | - | chr2_4:5236500-5236519 | None:intergenic | 20.0% |
| !! | TGTTATTCATCTATTCTATT+AGG | + | chr2_4:5236535-5236554 | Msa0310450:intron | 20.0% |
| !! | GTTATTCATCTATTCTATTA+GGG | + | chr2_4:5236536-5236555 | Msa0310450:intron | 20.0% |
| !! | AATTTCTTCTTCAATAAGAA+GGG | - | chr2_4:5236718-5236737 | None:intergenic | 20.0% |
| !! | AAATTTCTTCTTCAATAAGA+AGG | - | chr2_4:5236719-5236738 | None:intergenic | 20.0% |
| !!! | ATACGTTTCAATTTTAACTT+TGG | + | chr2_4:5237237-5237256 | Msa0310450:intron | 20.0% |
| !! | TGTATACTTACATATGTATT+TGG | + | chr2_4:5238076-5238095 | Msa0310450:intron | 20.0% |
| !! | GTTATTAATAATGAGTTTCT+AGG | + | chr2_4:5238174-5238193 | Msa0310450:intron | 20.0% |
| !! | TTTGCAAATCTAATTAACAA+AGG | - | chr2_4:5238529-5238548 | None:intergenic | 20.0% |
| !!! | ACATTTTAACTTTATCCATA+AGG | + | chr2_4:5238698-5238717 | Msa0310450:intron | 20.0% |
| !! | TCGACAAATAATTATTTACA+AGG | - | chr2_4:5239190-5239209 | None:intergenic | 20.0% |
| !!! | TATGGAATTTTGTAGTTTTT+TGG | + | chr2_4:5239636-5239655 | Msa0310450:three_prime_UTR | 20.0% |
| !! | CCTTAAATGACAATATAAAA+TGG | - | chr2_4:5239720-5239739 | None:intergenic | 20.0% |
| !!! | CCATTTTATATTGTCATTTA+AGG | + | chr2_4:5239717-5239736 | Msa0310450:three_prime_UTR | 20.0% |
| !! | ATTATACTTGAAATTAACAG+AGG | + | chr2_4:5239770-5239789 | Msa0310450:three_prime_UTR | 20.0% |
| !!! | GACAAACTAACCTTTATTTT+TGG | - | chr2_4:5236860-5236879 | None:intergenic | 25.0% |
| ! | ACATAAACAACATCAACAAA+AGG | - | chr2_4:5236882-5236901 | None:intergenic | 25.0% |
| ! | TTGTTTATGTTGTCTGATTT+GGG | + | chr2_4:5236892-5236911 | Msa0310450:intron | 25.0% |
| !!! | CTGGTATTGATTTTTTTTCT+GGG | + | chr2_4:5237143-5237162 | Msa0310450:intron | 25.0% |
| ! | TTAGTACACACATGTTAAAT+AGG | - | chr2_4:5237279-5237298 | None:intergenic | 25.0% |
| ! | AAAGATCCAACATCTAAATT+AGG | + | chr2_4:5237349-5237368 | Msa0310450:intron | 25.0% |
| ! | AATCATAAGAATAGAACAAG+AGG | - | chr2_4:5237642-5237661 | None:intergenic | 25.0% |
| !!! | TCTTTTGTTTTCTTTTCTCT+TGG | - | chr2_4:5237808-5237827 | None:intergenic | 25.0% |
| ! | AAGAGAAAAGAAAACAAAAG+AGG | + | chr2_4:5237807-5237826 | Msa0310450:CDS | 25.0% |
| !! | TTACTGTTTTACAAGTTTGT+TGG | + | chr2_4:5238031-5238050 | Msa0310450:intron | 25.0% |
| ! | TGTAAGTATACAAATAGCAA+TGG | - | chr2_4:5238068-5238087 | None:intergenic | 25.0% |
| ! | GATAAAGTTAAAATGTGAAG+TGG | - | chr2_4:5238694-5238713 | None:intergenic | 25.0% |
| ! | AGCATAATATGAGAAAACAA+AGG | - | chr2_4:5238771-5238790 | None:intergenic | 25.0% |
| ! | ACTAGATGAAAAGATAACAA+AGG | - | chr2_4:5239248-5239267 | None:intergenic | 25.0% |
| ! | GAGTATATCATGATTATTCT+TGG | - | chr2_4:5239349-5239368 | None:intergenic | 25.0% |
| ! | TGATATACTCAATGTTAACA+AGG | + | chr2_4:5239359-5239378 | Msa0310450:CDS | 25.0% |
| !! | ATCAAAATTACTGTGCTTTT+GGG | - | chr2_4:5239612-5239631 | None:intergenic | 25.0% |
| !! | AATCAAAATTACTGTGCTTT+TGG | - | chr2_4:5239613-5239632 | None:intergenic | 25.0% |
| !! | ATTTCAAGTATAATCACTTG+TGG | - | chr2_4:5239764-5239783 | None:intergenic | 25.0% |
| ACAAATCAAATGAGTGATGA+GGG | - | chr2_4:5236306-5236325 | None:intergenic | 30.0% | |
| AACAAATCAAATGAGTGATG+AGG | - | chr2_4:5236307-5236326 | None:intergenic | 30.0% | |
| TCAATTTCAGAGAGTTGAAA+CGG | - | chr2_4:5236330-5236349 | None:intergenic | 30.0% | |
| AAAGAAAATGGAGATTGAGA+TGG | + | chr2_4:5236355-5236374 | Msa0310450:exon | 30.0% | |
| GAAAAATCAAATTGAAGTGG+CGG | - | chr2_4:5236497-5236516 | None:intergenic | 30.0% | |
| !! | GTGAAAGAGTGTTTACAAAA+AGG | + | chr2_4:5236567-5236586 | Msa0310450:CDS | 30.0% |
| GTGTTTATCATTTGCTCATA+AGG | + | chr2_4:5236777-5236796 | Msa0310450:intron | 30.0% | |
| !!! | AACCTTTATTTTTGGCAAAC+AGG | - | chr2_4:5236852-5236871 | None:intergenic | 30.0% |
| GTTGTTTATGTTGTCTGATT+TGG | + | chr2_4:5236891-5236910 | Msa0310450:intron | 30.0% | |
| AGAAGCTATTCCTATTATTG+AGG | + | chr2_4:5237065-5237084 | Msa0310450:CDS | 30.0% | |
| AATGTGGAATTACTTACCAT+CGG | - | chr2_4:5237100-5237119 | None:intergenic | 30.0% | |
| !!! | GCTGGTATTGATTTTTTTTC+TGG | + | chr2_4:5237142-5237161 | Msa0310450:intron | 30.0% |
| !!! | GTATTGATTTTTTTTCTGGG+TGG | + | chr2_4:5237146-5237165 | Msa0310450:intron | 30.0% |
| !! | TATCCTTCGTTTTGAATGTT+TGG | + | chr2_4:5237188-5237207 | Msa0310450:intron | 30.0% |
| TAACCAAACATTCAAAACGA+AGG | - | chr2_4:5237194-5237213 | None:intergenic | 30.0% | |
| CATGCTATGATTAAACATTG+TGG | - | chr2_4:5237398-5237417 | None:intergenic | 30.0% | |
| ATGTAGTGCTATATCGTTAA+TGG | + | chr2_4:5237743-5237762 | Msa0310450:intron | 30.0% | |
| ! | TTTTCTTTTCTCTTGGCAAA+AGG | - | chr2_4:5237801-5237820 | None:intergenic | 30.0% |
| TTGAAAAATGCTGCAAAGTT+TGG | + | chr2_4:5237867-5237886 | Msa0310450:CDS | 30.0% | |
| TGAAAAATGCTGCAAAGTTT+GGG | + | chr2_4:5237868-5237887 | Msa0310450:CDS | 30.0% | |
| !! | AGCTATCAATTAGTTTGTAC+AGG | + | chr2_4:5238197-5238216 | Msa0310450:intron | 30.0% |
| !! | GCTATCAATTAGTTTGTACA+GGG | + | chr2_4:5238198-5238217 | Msa0310450:intron | 30.0% |
| AATTGCAGTTTAGCCTATAT+AGG | + | chr2_4:5238228-5238247 | Msa0310450:intron | 30.0% | |
| ATTGCAGTTTAGCCTATATA+GGG | + | chr2_4:5238229-5238248 | Msa0310450:intron | 30.0% | |
| CAAAACTGTTAAACAGACTA+AGG | - | chr2_4:5238397-5238416 | None:intergenic | 30.0% | |
| GTTATTATGCTTCAGTGATT+TGG | + | chr2_4:5238478-5238497 | Msa0310450:intron | 30.0% | |
| AATGAAGCATAGAAACCTTA+TGG | - | chr2_4:5238716-5238735 | None:intergenic | 30.0% | |
| AATTCCACTGTAATTGTTAC+AGG | - | chr2_4:5238914-5238933 | None:intergenic | 30.0% | |
| TGTAACAATTACAGTGGAAT+TGG | + | chr2_4:5238913-5238932 | Msa0310450:intron | 30.0% | |
| GTAACAATTACAGTGGAATT+GGG | + | chr2_4:5238914-5238933 | Msa0310450:intron | 30.0% | |
| AAGTTTGACAAAAAATTGCC+AGG | + | chr2_4:5239089-5239108 | Msa0310450:CDS | 30.0% | |
| !! | TTCTTTCCTTTATGTTTTGG+AGG | - | chr2_4:5239122-5239141 | None:intergenic | 30.0% |
| ! | CGATTCTTTCCTTTATGTTT+TGG | - | chr2_4:5239125-5239144 | None:intergenic | 30.0% |
| ACATAAAGGAAAGAATCGAA+AGG | + | chr2_4:5239127-5239146 | Msa0310450:CDS | 30.0% | |
| !! | TCAGAAGAAGCCTTTTAAAA+AGG | + | chr2_4:5239570-5239589 | Msa0310450:CDS | 30.0% |
| !! | CAGAAGAAGCCTTTTAAAAA+GGG | + | chr2_4:5239571-5239590 | Msa0310450:CDS | 30.0% |
| ! | TTTTTGGATACACTTTTCAG+TGG | + | chr2_4:5239652-5239671 | Msa0310450:three_prime_UTR | 30.0% |
| ! | GTACATACATGTTTTTCTCG+GGG | - | chr2_4:5236696-5236715 | None:intergenic | 35.0% |
| ! | GGTACATACATGTTTTTCTC+GGG | - | chr2_4:5236697-5236716 | None:intergenic | 35.0% |
| ! | GGGTACATACATGTTTTTCT+CGG | - | chr2_4:5236698-5236717 | None:intergenic | 35.0% |
| ! | TATAATGTTTTCAGCTGCCA+AGG | + | chr2_4:5236803-5236822 | Msa0310450:intron | 35.0% |
| GACCTGTTTGCCAAAAATAA+AGG | + | chr2_4:5236847-5236866 | Msa0310450:CDS | 35.0% | |
| ! | CTTACTGAACTTTGTTATGC+AGG | + | chr2_4:5236952-5236971 | Msa0310450:intron | 35.0% |
| GTTATGCAGGCATTATTAAG+CGG | + | chr2_4:5236965-5236984 | Msa0310450:intron | 35.0% | |
| CAAGTTTATGATGAACCATC+TGG | + | chr2_4:5237000-5237019 | Msa0310450:CDS | 35.0% | |
| GTAGGTTTAGCCTCAATAAT+AGG | - | chr2_4:5237078-5237097 | None:intergenic | 35.0% | |
| TCGATAATAGGGATTGAATG+TGG | - | chr2_4:5237116-5237135 | None:intergenic | 35.0% | |
| AAAAAAATCAATACCAGCCC+AGG | - | chr2_4:5237140-5237159 | None:intergenic | 35.0% | |
| AATGTTTGGTTATCGCTGTT+GGG | + | chr2_4:5237202-5237221 | Msa0310450:intron | 35.0% | |
| ! | TTTAACTTTGGATACTTGCG+AGG | + | chr2_4:5237249-5237268 | Msa0310450:intron | 35.0% |
| ACATTGAATTTGACCTCCTT+TGG | + | chr2_4:5237319-5237338 | Msa0310450:intron | 35.0% | |
| ATCTTTAAACATGCCAAAGG+AGG | - | chr2_4:5237335-5237354 | None:intergenic | 35.0% | |
| TGGATCTTTAAACATGCCAA+AGG | - | chr2_4:5237338-5237357 | None:intergenic | 35.0% | |
| ACGGTTCCTAATTTAGATGT+TGG | - | chr2_4:5237358-5237377 | None:intergenic | 35.0% | |
| ACTACTCTTGAAAGCTCATA+AGG | - | chr2_4:5237428-5237447 | None:intergenic | 35.0% | |
| GAAAAATGCTGCAAAGTTTG+GGG | + | chr2_4:5237869-5237888 | Msa0310450:CDS | 35.0% | |
| AATGGTTAAGAGAGTTACCT+AGG | - | chr2_4:5237900-5237919 | None:intergenic | 35.0% | |
| ! | TCAAGGCTAGTTATTGGAAA+TGG | - | chr2_4:5237918-5237937 | None:intergenic | 35.0% |
| !! | ATTTCCAATAACTAGCCTTG+AGG | + | chr2_4:5237917-5237936 | Msa0310450:intron | 35.0% |
| ! | AAAACCTCAAGGCTAGTTAT+TGG | - | chr2_4:5237924-5237943 | None:intergenic | 35.0% |
| AACAATGCATGGATATGTCA+AGG | - | chr2_4:5238114-5238133 | None:intergenic | 35.0% | |
| GTTCAACAGAAAACAATGCA+TGG | - | chr2_4:5238125-5238144 | None:intergenic | 35.0% | |
| TAGGCTAAACTGCAATTAAG+TGG | - | chr2_4:5238225-5238244 | None:intergenic | 35.0% | |
| ATGATAGCTTCACCCTATAT+AGG | - | chr2_4:5238244-5238263 | None:intergenic | 35.0% | |
| AAAGTCCTTAGTCTGTTCAA+AGG | + | chr2_4:5238620-5238639 | Msa0310450:intron | 35.0% | |
| CAAAACCTTTGAACAGACTA+AGG | - | chr2_4:5238628-5238647 | None:intergenic | 35.0% | |
| ACACAACAGTAGATAACTGT+TGG | - | chr2_4:5238848-5238867 | None:intergenic | 35.0% | |
| TACACCTGTAACAATTACAG+TGG | + | chr2_4:5238907-5238926 | Msa0310450:intron | 35.0% | |
| AAGGTTACCAAGGATGAATT+AGG | + | chr2_4:5239023-5239042 | Msa0310450:CDS | 35.0% | |
| GAAAAGCCTCCAAAACATAA+AGG | + | chr2_4:5239113-5239132 | Msa0310450:CDS | 35.0% | |
| !! | TCTTTTCATCTAGTTCCTAC+CGG | + | chr2_4:5239254-5239273 | Msa0310450:intron | 35.0% |
| AATTGTACTCTCTGCATTCT+AGG | + | chr2_4:5239462-5239481 | Msa0310450:intron | 35.0% | |
| CCTTCGATTTATCATTCCTT+CGG | - | chr2_4:5239522-5239541 | None:intergenic | 35.0% | |
| ! | TTCTTGGCACCCTTTTTAAA+AGG | - | chr2_4:5239583-5239602 | None:intergenic | 35.0% |
| !! | TTTAAAAAGGGTGCCAAGAA+AGG | + | chr2_4:5239583-5239602 | Msa0310450:CDS | 35.0% |
| !! | GTGATGAGGGTTGTTTTGTA+AGG | - | chr2_4:5236293-5236312 | None:intergenic | 40.0% |
| GAAAATGGAGATTGAGATGG+AGG | + | chr2_4:5236358-5236377 | Msa0310450:exon | 40.0% | |
| ! | AATTTGTTCGAGGTTGACCT+CGG | + | chr2_4:5236389-5236408 | Msa0310450:CDS | 40.0% |
| GTATGAATGATGAGAGTCGA+AGG | - | chr2_4:5236426-5236445 | None:intergenic | 40.0% | |
| CATACCTGGATTGTTGAGAA+GGG | - | chr2_4:5236448-5236467 | None:intergenic | 40.0% | |
| ACATACCTGGATTGTTGAGA+AGG | - | chr2_4:5236449-5236468 | None:intergenic | 40.0% | |
| CCTTCAACATCTTGAGTAGA+GGG | - | chr2_4:5236636-5236655 | None:intergenic | 40.0% | |
| ACCTTCAACATCTTGAGTAG+AGG | - | chr2_4:5236637-5236656 | None:intergenic | 40.0% | |
| ! | ATGTTTTTCTCGGGGTAATC+TGG | - | chr2_4:5236688-5236707 | None:intergenic | 40.0% |
| GCCAAAACCTCCTACTAAAT+GGG | + | chr2_4:5236825-5236844 | Msa0310450:CDS | 40.0% | |
| ! | TCCCATTTAGTAGGAGGTTT+TGG | - | chr2_4:5236829-5236848 | None:intergenic | 40.0% |
| !!! | GTTGTCTGATTTGGGCTTTT+CGG | + | chr2_4:5236900-5236919 | Msa0310450:intron | 40.0% |
| AGGCATTATTAAGCGGAACA+AGG | + | chr2_4:5236972-5236991 | Msa0310450:intron | 40.0% | |
| TGGAATTACTTACCATCGGT+AGG | - | chr2_4:5237096-5237115 | None:intergenic | 40.0% | |
| TCAATCCCTATTATCGAACC+TGG | + | chr2_4:5237119-5237138 | Msa0310450:intron | 40.0% | |
| CAATCCCTATTATCGAACCT+GGG | + | chr2_4:5237120-5237139 | Msa0310450:intron | 40.0% | |
| GGTGGTTGAAAAATGAGACT+TGG | + | chr2_4:5237164-5237183 | Msa0310450:intron | 40.0% | |
| GAATGTTTGGTTATCGCTGT+TGG | + | chr2_4:5237201-5237220 | Msa0310450:intron | 40.0% | |
| ATGTTTGGTTATCGCTGTTG+GGG | + | chr2_4:5237203-5237222 | Msa0310450:intron | 40.0% | |
| !! | GGACGATCTGATGCTTTTTA+CGG | - | chr2_4:5237377-5237396 | None:intergenic | 40.0% |
| !!! | GTTTTGAAGTCCTGACTGAT+GGG | - | chr2_4:5237463-5237482 | None:intergenic | 40.0% |
| !!! | AGTTTTGAAGTCCTGACTGA+TGG | - | chr2_4:5237464-5237483 | None:intergenic | 40.0% |
| TCAGTCAGGACTTCAAAACT+TGG | + | chr2_4:5237464-5237483 | Msa0310450:intron | 40.0% | |
| TGCATGGATATGTCAAGGTA+GGG | - | chr2_4:5238109-5238128 | None:intergenic | 40.0% | |
| ATGCATGGATATGTCAAGGT+AGG | - | chr2_4:5238110-5238129 | None:intergenic | 40.0% | |
| GACGCGTAGTTACTCATAAT+TGG | - | chr2_4:5238672-5238691 | None:intergenic | 40.0% | |
| TGTTATAGGCAAAGATGTCG+CGG | - | chr2_4:5238982-5239001 | None:intergenic | 40.0% | |
| ACCACAAAAGAAGGTTACCA+AGG | + | chr2_4:5239013-5239032 | Msa0310450:CDS | 40.0% | |
| !! | TCCTTGGTAACCTTCTTTTG+TGG | - | chr2_4:5239017-5239036 | None:intergenic | 40.0% |
| TACACTGCCTAATTCATCCT+TGG | - | chr2_4:5239033-5239052 | None:intergenic | 40.0% | |
| ! | GCTTTTCTCCTTCTTCACAT+TGG | - | chr2_4:5239500-5239519 | None:intergenic | 40.0% |
| CCGAAGGAATGATAAATCGA+AGG | + | chr2_4:5239519-5239538 | Msa0310450:CDS | 40.0% | |
| ! | GGCTGCTAAGAATTTGTTCG+AGG | + | chr2_4:5236379-5236398 | Msa0310450:CDS | 45.0% |
| GGTTGACCTCGGTAATCTAA+TGG | + | chr2_4:5236400-5236419 | Msa0310450:CDS | 45.0% | |
| CATACCCTTCTCAACAATCC+AGG | + | chr2_4:5236441-5236460 | Msa0310450:CDS | 45.0% | |
| ! | AGAAAGGAGGTGTACATACC+TGG | - | chr2_4:5236462-5236481 | None:intergenic | 45.0% |
| CCCTCTACTCAAGATGTTGA+AGG | + | chr2_4:5236633-5236652 | Msa0310450:CDS | 45.0% | |
| ! | TTTTTCTCGGGGTAATCTGG+TGG | - | chr2_4:5236685-5236704 | None:intergenic | 45.0% |
| !! | TTAGTAGGAGGTTTTGGCCT+TGG | - | chr2_4:5236823-5236842 | None:intergenic | 45.0% |
| GGCCAAAACCTCCTACTAAA+TGG | + | chr2_4:5236824-5236843 | Msa0310450:CDS | 45.0% | |
| AACAGGTCCCATTTAGTAGG+AGG | - | chr2_4:5236835-5236854 | None:intergenic | 45.0% | |
| GCAAACAGGTCCCATTTAGT+AGG | - | chr2_4:5236838-5236857 | None:intergenic | 45.0% | |
| ! | ATGATGAACCATCTGGAACC+TGG | + | chr2_4:5237007-5237026 | Msa0310450:CDS | 45.0% |
| ATATCCATGTCTGCGTTTCC+AGG | - | chr2_4:5237028-5237047 | None:intergenic | 45.0% | |
| ATTGAGGCTAAACCTACCGA+TGG | + | chr2_4:5237081-5237100 | Msa0310450:CDS | 45.0% | |
| ! | CCTGACTGATGGGTAAATCA+TGG | - | chr2_4:5237453-5237472 | None:intergenic | 45.0% |
| CCATGATTTACCCATCAGTC+AGG | + | chr2_4:5237450-5237469 | Msa0310450:intron | 45.0% | |
| ! | ACATTTTGCAGATCCAGACG+AGG | + | chr2_4:5237773-5237792 | Msa0310450:intron | 45.0% |
| ! | CAAAGTTTGGGGCTTTACCT+AGG | + | chr2_4:5237880-5237899 | Msa0310450:CDS | 45.0% |
| ACCATGCAACGAAAACCTCA+AGG | - | chr2_4:5237935-5237954 | None:intergenic | 45.0% | |
| CACGAGCAGATGATGTATAG+TGG | - | chr2_4:5237978-5237997 | None:intergenic | 45.0% | |
| ATACATCATCTGCTCGTGCT+TGG | + | chr2_4:5237980-5237999 | Msa0310450:intron | 45.0% | |
| GGAGTTTGCACATAGTTCAG+AGG | - | chr2_4:5238376-5238395 | None:intergenic | 45.0% | |
| GCGACATCTTTGCCTATAAC+AGG | + | chr2_4:5238981-5239000 | Msa0310450:CDS | 45.0% | |
| ! | AACCTTCTTTTGTGGTGCGT+GGG | - | chr2_4:5239009-5239028 | None:intergenic | 45.0% |
| ! | TAACCTTCTTTTGTGGTGCG+TGG | - | chr2_4:5239010-5239029 | None:intergenic | 45.0% |
| GATGAATTAGGCAGTGTAGC+AGG | + | chr2_4:5239035-5239054 | Msa0310450:CDS | 45.0% | |
| CACAGTGACCAATGTGAAGA+AGG | + | chr2_4:5239489-5239508 | Msa0310450:CDS | 45.0% | |
| TGAAGAAGGAGAAAAGCCGA+AGG | + | chr2_4:5239503-5239522 | Msa0310450:CDS | 45.0% | |
| !!! | TGCTTTTGGGTTGCCTTTCT+TGG | - | chr2_4:5239599-5239618 | None:intergenic | 45.0% |
| GTATAATCACTTGTGGTGCC+TGG | - | chr2_4:5239757-5239776 | None:intergenic | 45.0% | |
| !!! | AAAAAATTGAAAATTTTTTA+TGG | - | chr2_4:5238585-5238604 | None:intergenic | 5.0% |
| CGAAGGCCATTAGATTACCG+AGG | - | chr2_4:5236409-5236428 | None:intergenic | 50.0% | |
| TGGGGCAGACAATTGAACGA+GGG | - | chr2_4:5236661-5236680 | None:intergenic | 50.0% | |
| TTGGGGCAGACAATTGAACG+AGG | - | chr2_4:5236662-5236681 | None:intergenic | 50.0% | |
| CCAGCCCAGGTTCGATAATA+GGG | - | chr2_4:5237127-5237146 | None:intergenic | 50.0% | |
| ACCAGCCCAGGTTCGATAAT+AGG | - | chr2_4:5237128-5237147 | None:intergenic | 50.0% | |
| TATCGCTGTTGGGGACAACT+AGG | + | chr2_4:5237212-5237231 | Msa0310450:intron | 50.0% | |
| TTGGCAAAAGGATCCTCGTC+TGG | - | chr2_4:5237789-5237808 | None:intergenic | 50.0% | |
| ! | GCCTTGAGGTTTTCGTTGCA+TGG | + | chr2_4:5237931-5237950 | Msa0310450:intron | 50.0% |
| ACCATGCAGCCATGTTCAGT+TGG | + | chr2_4:5238956-5238975 | Msa0310450:intron | 50.0% | |
| AACCCACGCACCACAAAAGA+AGG | + | chr2_4:5239004-5239023 | Msa0310450:CDS | 50.0% | |
| AAACTTCCCACCACTAGCTG+TGG | - | chr2_4:5239075-5239094 | None:intergenic | 50.0% | |
| !!! | TGTTTTGGAGGCTTTTCGCC+TGG | - | chr2_4:5239110-5239129 | None:intergenic | 50.0% |
| TAGTTCCTACCGGTAGCAGA+AGG | + | chr2_4:5239264-5239283 | Msa0310450:intron | 50.0% | |
| TACCGGTAGCAGAAGGAACA+GGG | + | chr2_4:5239271-5239290 | Msa0310450:CDS | 50.0% | |
| AGGAACAGGGGTAGGATCAA+AGG | + | chr2_4:5239284-5239303 | Msa0310450:CDS | 50.0% | |
| AGGGGTAGGATCAAAGGAGA+GGG | + | chr2_4:5239290-5239309 | Msa0310450:CDS | 50.0% | |
| AAGGCTTCCATCACAACACC+AGG | + | chr2_4:5239736-5239755 | Msa0310450:three_prime_UTR | 50.0% | |
| GCGCTCGAAAGGAAGAAAGG+AGG | - | chr2_4:5236475-5236494 | None:intergenic | 55.0% | |
| GGGGCAGACAATTGAACGAG+GGG | - | chr2_4:5236660-5236679 | None:intergenic | 55.0% | |
| TCGGGGTAATCTGGTGGTTG+GGG | - | chr2_4:5236679-5236698 | None:intergenic | 55.0% | |
| CTCGGGGTAATCTGGTGGTT+GGG | - | chr2_4:5236680-5236699 | None:intergenic | 55.0% | |
| TCTCGGGGTAATCTGGTGGT+TGG | - | chr2_4:5236681-5236700 | None:intergenic | 55.0% | |
| CTGCGTTTCCAGGTTCCAGA+TGG | - | chr2_4:5237018-5237037 | None:intergenic | 55.0% | |
| GGAACCTGGAAACGCAGACA+TGG | + | chr2_4:5237021-5237040 | Msa0310450:CDS | 55.0% | |
| CCCTATTATCGAACCTGGGC+TGG | + | chr2_4:5237124-5237143 | Msa0310450:intron | 55.0% | |
| GCCAACTGAACATGGCTGCA+TGG | - | chr2_4:5238960-5238979 | None:intergenic | 55.0% | |
| ATGTCGCGGCCAACTGAACA+TGG | - | chr2_4:5238968-5238987 | None:intergenic | 55.0% | |
| GGTGCGTGGGTTCCTGTTAT+AGG | - | chr2_4:5238996-5239015 | None:intergenic | 55.0% | |
| ACCACTAGCTGTGGCAGTTG+AGG | - | chr2_4:5239066-5239085 | None:intergenic | 55.0% | |
| TCAACTGCCACAGCTAGTGG+TGG | + | chr2_4:5239065-5239084 | Msa0310450:CDS | 55.0% | |
| CAACTGCCACAGCTAGTGGT+GGG | + | chr2_4:5239066-5239085 | Msa0310450:CDS | 55.0% | |
| CTGTTCCTTCTGCTACCGGT+AGG | - | chr2_4:5239272-5239291 | None:intergenic | 55.0% | |
| CTACCGGTAGCAGAAGGAAC+AGG | + | chr2_4:5239270-5239289 | Msa0310450:CDS | 55.0% | |
| ACCGGTAGCAGAAGGAACAG+GGG | + | chr2_4:5239272-5239291 | Msa0310450:CDS | 55.0% | |
| ACCCCTGTTCCTTCTGCTAC+CGG | - | chr2_4:5239276-5239295 | None:intergenic | 55.0% | |
| GTAGCAGAAGGAACAGGGGT+AGG | + | chr2_4:5239276-5239295 | Msa0310450:CDS | 55.0% | |
| CAGGGGTAGGATCAAAGGAG+AGG | + | chr2_4:5239289-5239308 | Msa0310450:CDS | 55.0% | |
| !! | TGTGGTGCCTGGTGTTGTGA+TGG | - | chr2_4:5239746-5239765 | None:intergenic | 55.0% |
| GCGGCGCTCGAAAGGAAGAA+AGG | - | chr2_4:5236478-5236497 | None:intergenic | 60.0% | |
| TTGAAGTGGCGGCGCTCGAA+AGG | - | chr2_4:5236486-5236505 | None:intergenic | 60.0% | |
| GCCTCAACTGCCACAGCTAG+TGG | + | chr2_4:5239062-5239081 | Msa0310450:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 5236260 | 5239844 | 5236260 | ID=Msa0310450;Name=Msa0310450 |
| chr2_4 | mRNA | 5236260 | 5239844 | 5236260 | ID=Msa0310450-mRNA-1;Parent=Msa0310450;Name=Msa0310450-mRNA-1;_AED=0.07;_eAED=0.07;_QI=102|1|1|1|1|1|8|220|329 |
| chr2_4 | exon | 5236260 | 5236462 | 5236260 | ID=Msa0310450-mRNA-1:exon:1821;Parent=Msa0310450-mRNA-1 |
| chr2_4 | exon | 5236557 | 5236707 | 5236557 | ID=Msa0310450-mRNA-1:exon:1822;Parent=Msa0310450-mRNA-1 |
| chr2_4 | exon | 5236817 | 5236868 | 5236817 | ID=Msa0310450-mRNA-1:exon:1823;Parent=Msa0310450-mRNA-1 |
| chr2_4 | exon | 5236974 | 5237102 | 5236974 | ID=Msa0310450-mRNA-1:exon:1824;Parent=Msa0310450-mRNA-1 |
| chr2_4 | exon | 5237784 | 5237901 | 5237784 | ID=Msa0310450-mRNA-1:exon:1825;Parent=Msa0310450-mRNA-1 |
| chr2_4 | exon | 5238965 | 5239148 | 5238965 | ID=Msa0310450-mRNA-1:exon:1826;Parent=Msa0310450-mRNA-1 |
| chr2_4 | exon | 5239267 | 5239380 | 5239267 | ID=Msa0310450-mRNA-1:exon:1827;Parent=Msa0310450-mRNA-1 |
| chr2_4 | exon | 5239484 | 5239844 | 5239484 | ID=Msa0310450-mRNA-1:exon:1828;Parent=Msa0310450-mRNA-1 |
| chr2_4 | five_prime_UTR | 5236260 | 5236361 | 5236260 | ID=Msa0310450-mRNA-1:five_prime_utr;Parent=Msa0310450-mRNA-1 |
| chr2_4 | CDS | 5236362 | 5236462 | 5236362 | ID=Msa0310450-mRNA-1:cds;Parent=Msa0310450-mRNA-1 |
| chr2_4 | CDS | 5236557 | 5236707 | 5236557 | ID=Msa0310450-mRNA-1:cds;Parent=Msa0310450-mRNA-1 |
| chr2_4 | CDS | 5236817 | 5236868 | 5236817 | ID=Msa0310450-mRNA-1:cds;Parent=Msa0310450-mRNA-1 |
| chr2_4 | CDS | 5236974 | 5237102 | 5236974 | ID=Msa0310450-mRNA-1:cds;Parent=Msa0310450-mRNA-1 |
| chr2_4 | CDS | 5237784 | 5237901 | 5237784 | ID=Msa0310450-mRNA-1:cds;Parent=Msa0310450-mRNA-1 |
| chr2_4 | CDS | 5238965 | 5239148 | 5238965 | ID=Msa0310450-mRNA-1:cds;Parent=Msa0310450-mRNA-1 |
| chr2_4 | CDS | 5239267 | 5239380 | 5239267 | ID=Msa0310450-mRNA-1:cds;Parent=Msa0310450-mRNA-1 |
| chr2_4 | CDS | 5239484 | 5239624 | 5239484 | ID=Msa0310450-mRNA-1:cds;Parent=Msa0310450-mRNA-1 |
| chr2_4 | three_prime_UTR | 5239625 | 5239844 | 5239625 | ID=Msa0310450-mRNA-1:three_prime_utr;Parent=Msa0310450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
