Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372270 | XP_003593202.2 | 94.260 | 331 | 17 | 2 | 1 | 329 | 1 | 331 | 0.0 | 628 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372270 | sp|Q9SH88|RRS1_ARATH | 60.615 | 325 | 119 | 3 | 1 | 324 | 1 | 317 | 5.47e-130 | 376 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372270 | G7INW4 | 94.260 | 331 | 17 | 2 | 1 | 329 | 1 | 331 | 0.0 | 628 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0138890 | Msa1372270 | 0.810569 | 1.080027e-50 | -8.615850e-47 |
| Msa0310450 | Msa1372270 | 0.906754 | 1.058490e-80 | -8.615850e-47 |
| Msa1218170 | Msa1372270 | 0.810319 | 1.222577e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372270 | MtrunA17_Chr2g0279161 | 94.260 | 331 | 17 | 2 | 1 | 329 | 1 | 331 | 0.0 | 628 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1372270 | AT2G37990.1 | 60.615 | 325 | 119 | 3 | 1 | 324 | 1 | 317 | 5.56e-131 | 376 |
Find 85 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCAAAATTACTGTGCTTT+TGG | 0.169446 | tig0019276:+25571 | None:intergenic |
| GGCCAAAACCTCCTACTAAA+TGG | 0.206025 | tig0019276:-28357 | Msa1372270:CDS |
| CGATTCTTTCCTTTATGTTT+TGG | 0.214740 | tig0019276:+26059 | None:intergenic |
| TCCCATTTAGTAGGAGGTTT+TGG | 0.249068 | tig0019276:+28355 | None:intergenic |
| CCTTAAATGACAATATAAAA+TGG | 0.282907 | tig0019276:+25464 | None:intergenic |
| GAGTATATCATGATTATTCT+TGG | 0.294298 | tig0019276:+25835 | None:intergenic |
| CTCGGGGTAATCTGGTGGTT+GGG | 0.302345 | tig0019276:+28509 | None:intergenic |
| GTGAAAGAGTGTTTACAAAA+AGG | 0.307046 | tig0019276:-28619 | Msa1372270:CDS |
| GGTGCGTGGGTTCCTGTTAT+AGG | 0.317411 | tig0019276:+26188 | None:intergenic |
| AAATTGAATCAGAAAGAAAA+TGG | 0.323039 | tig0019276:-28845 | Msa1372270:exon |
| GTAGGTTTAGCCTCAATAAT+AGG | 0.359792 | tig0019276:+28105 | None:intergenic |
| ATATCCATGTCTGCGTTTCC+AGG | 0.400440 | tig0019276:+28155 | None:intergenic |
| CCTTCGATTTATCATTCCTT+CGG | 0.407735 | tig0019276:+25662 | None:intergenic |
| GCGACATCTTTGCCTATAAC+AGG | 0.413812 | tig0019276:-26200 | Msa1372270:CDS |
| CCCTCTACTCAAGATGTTGA+AGG | 0.416054 | tig0019276:-28553 | Msa1372270:CDS |
| GGTAATCTGGTGGTTGGGGC+AGG | 0.425628 | tig0019276:+28514 | None:intergenic |
| GCAAACAGGTCCCATTTAGT+AGG | 0.428944 | tig0019276:+28346 | None:intergenic |
| TCTCGGGGTAATCTGGTGGT+TGG | 0.429457 | tig0019276:+28508 | None:intergenic |
| CTACCGGTAGCAGAAGGAAC+AGG | 0.433565 | tig0019276:-25911 | Msa1372270:CDS |
| GGTTGACCTCGGTAATCTAA+TGG | 0.449578 | tig0019276:-28788 | Msa1372270:CDS |
| CAAGTTTATGATGAACCATC+TGG | 0.452578 | tig0019276:-28180 | Msa1372270:CDS |
| GCCAAAACCTCCTACTAAAT+GGG | 0.459534 | tig0019276:-28356 | Msa1372270:CDS |
| GAAAAGCCTCCAAAACATAA+AGG | 0.462069 | tig0019276:-26068 | Msa1372270:CDS |
| TCGGGGTAATCTGGTGGTTG+GGG | 0.468261 | tig0019276:+28510 | None:intergenic |
| TTGGCAAAAGGATCCTCGTC+TGG | 0.469582 | tig0019276:+27395 | None:intergenic |
| ACCCCTGTTCCTTCTGCTAC+CGG | 0.474967 | tig0019276:+25908 | None:intergenic |
| AGGAACAGGGGTAGGATCAA+AGG | 0.493785 | tig0019276:-25897 | Msa1372270:CDS |
| TCAATTTCAGAGAGTTGAAA+CGG | 0.493965 | tig0019276:+28861 | None:intergenic |
| GCCTCAACTGCCACAGCTAG+TGG | 0.494544 | tig0019276:-26119 | Msa1372270:CDS |
| GGCTGCTAAGAATTTGTTCG+AGG | 0.502076 | tig0019276:-28809 | Msa1372270:CDS |
| AAGGTTACCAAGGATGAATT+AGG | 0.504736 | tig0019276:-26158 | Msa1372270:CDS |
| CACAGTGACCAATGTGAAGA+AGG | 0.507110 | tig0019276:-25692 | Msa1372270:CDS |
| CTGCGTTTCCAGGTTCCAGA+TGG | 0.508540 | tig0019276:+28165 | None:intergenic |
| TACACTGCCTAATTCATCCT+TGG | 0.511559 | tig0019276:+26151 | None:intergenic |
| TGTGGTGCCTGGTGTTGTGA+TGG | 0.514224 | tig0019276:+25438 | None:intergenic |
| GATGAATTAGGCAGTGTAGC+AGG | 0.517015 | tig0019276:-26146 | Msa1372270:CDS |
| AAGAGAAAAGAAAACAAAAG+AGG | 0.517890 | tig0019276:-27374 | Msa1372270:CDS |
| ATGATGAACCATCTGGAACC+TGG | 0.518041 | tig0019276:-28173 | Msa1372270:CDS |
| AACCCACGCACCACAAAAGA+AGG | 0.519084 | tig0019276:-26177 | Msa1372270:CDS |
| AAAGAAAATGGAGATTGAGA+TGG | 0.520851 | tig0019276:-28833 | Msa1372270:exon |
| AGAAGCTATTCCTATTATTG+AGG | 0.529821 | tig0019276:-28115 | Msa1372270:CDS |
| CAAAGTTTGGGGCTTTACCT+AGG | 0.530560 | tig0019276:-27301 | Msa1372270:intron |
| GAAAATGGAGATTGAGATGG+AGG | 0.531102 | tig0019276:-28830 | Msa1372270:exon |
| ACCACTAGCTGTGGCAGTTG+AGG | 0.531694 | tig0019276:+26118 | None:intergenic |
| CATACCCTTCTCAACAATCC+AGG | 0.537224 | tig0019276:-28747 | Msa1372270:intron |
| GTATAATCACTTGTGGTGCC+TGG | 0.537491 | tig0019276:+25427 | None:intergenic |
| AACAGGTCCCATTTAGTAGG+AGG | 0.542260 | tig0019276:+28349 | None:intergenic |
| ACCATGCAGCCATGTTCAGT+TGG | 0.543010 | tig0019276:-26225 | Msa1372270:intron |
| ACATACCTGGATTGTTGAGA+AGG | 0.562948 | tig0019276:+28742 | None:intergenic |
| CCTTCAACATCTTGAGTAGA+GGG | 0.564606 | tig0019276:+28553 | None:intergenic |
| ATTTCAAGTATAATCACTTG+TGG | 0.569183 | tig0019276:+25420 | None:intergenic |
| ATGTCGCGGCCAACTGAACA+TGG | 0.570065 | tig0019276:+26216 | None:intergenic |
| TCAACTGCCACAGCTAGTGG+TGG | 0.576419 | tig0019276:-26116 | Msa1372270:CDS |
| TTGGGGCAGGCAATTGAACG+AGG | 0.586894 | tig0019276:+28527 | None:intergenic |
| ACCTTCAACATCTTGAGTAG+AGG | 0.587465 | tig0019276:+28552 | None:intergenic |
| AACAAATCAAATGAGTGATG+AGG | 0.589062 | tig0019276:+28884 | None:intergenic |
| ACAAATCAAATGAGTGATGA+GGG | 0.590577 | tig0019276:+28885 | None:intergenic |
| TGGAATTACTTACCATCGGT+AGG | 0.591410 | tig0019276:+28087 | None:intergenic |
| AAGGCTTCCATCACAACACC+AGG | 0.597161 | tig0019276:-25445 | Msa1372270:three_prime_UTR |
| CATACCTGGATTGTTGAGAA+GGG | 0.605884 | tig0019276:+28743 | None:intergenic |
| GGAACCTGGAAACGCAGACA+TGG | 0.610484 | tig0019276:-28159 | Msa1372270:CDS |
| TACCGGTAGCAGAAGGAACA+GGG | 0.611779 | tig0019276:-25910 | Msa1372270:CDS |
| TGGGGCAGGCAATTGAACGA+GGG | 0.618140 | tig0019276:+28528 | None:intergenic |
| AGGGGTAGGATCAAAGGAGA+GGG | 0.618168 | tig0019276:-25891 | Msa1372270:CDS |
| AGGCATTATTAAGCGGAACA+AGG | 0.619070 | tig0019276:-28208 | Msa1372270:CDS |
| CAACTGCCACAGCTAGTGGT+GGG | 0.621815 | tig0019276:-26115 | Msa1372270:CDS |
| TAGTTCCTACCGGTAGCAGA+AGG | 0.622035 | tig0019276:-25917 | Msa1372270:CDS |
| GTTATGCAGGCATTATTAAG+CGG | 0.622663 | tig0019276:-28215 | Msa1372270:intron |
| CTGTTCCTTCTGCTACCGGT+AGG | 0.633674 | tig0019276:+25912 | None:intergenic |
| CCGAAGGAATGATAAATCGA+AGG | 0.634190 | tig0019276:-25662 | Msa1372270:CDS |
| AAACTTCCCACCACTAGCTG+TGG | 0.634673 | tig0019276:+26109 | None:intergenic |
| GTATGAATGATGAGAGTCGA+AGG | 0.637332 | tig0019276:+28765 | None:intergenic |
| AATTTGTTCGAGGTTGACCT+CGG | 0.638182 | tig0019276:-28799 | Msa1372270:CDS |
| GTAGCAGAAGGAACAGGGGT+AGG | 0.639483 | tig0019276:-25905 | Msa1372270:CDS |
| GGGGCAGGCAATTGAACGAG+GGG | 0.642046 | tig0019276:+28529 | None:intergenic |
| TGATATACTCAATGTTAACA+AGG | 0.643030 | tig0019276:-25822 | Msa1372270:intron |
| ATTATACTTGAAATTAACAG+AGG | 0.643088 | tig0019276:-25411 | Msa1372270:three_prime_UTR |
| CAGGGGTAGGATCAAAGGAG+AGG | 0.644223 | tig0019276:-25892 | Msa1372270:CDS |
| ATTGAGGCTAAACCTACCGA+TGG | 0.658675 | tig0019276:-28099 | Msa1372270:intron |
| TGTTATAGGCAAAGATGTCG+CGG | 0.661140 | tig0019276:+26202 | None:intergenic |
| TGAAGAAGGAGAAAAGCCGA+AGG | 0.662135 | tig0019276:-25678 | Msa1372270:CDS |
| ACATAAAGGAAAGAATCGAA+AGG | 0.670337 | tig0019276:-26054 | Msa1372270:intron |
| ACCACAAAAGAAGGTTACCA+AGG | 0.679267 | tig0019276:-26168 | Msa1372270:CDS |
| CGAAGGCCATTAGATTACCG+AGG | 0.720268 | tig0019276:+28782 | None:intergenic |
| ACCGGTAGCAGAAGGAACAG+GGG | 0.747731 | tig0019276:-25909 | Msa1372270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACTATTTATAAATGTTAA+GGG | - | tig0019276:26720-26739 | Msa1372270:intron | 10.0% |
| !! | AAAAAATTGTAAATTCTTTA+TGG | + | tig0019276:27459-27478 | None:intergenic | 10.0% |
| !! | TAATTAATCTATTCTCTATT+AGG | - | tig0019276:25636-25655 | Msa1372270:CDS | 15.0% |
| !! | AATTAATCTATTCTCTATTA+GGG | - | tig0019276:25637-25656 | Msa1372270:CDS | 15.0% |
| !!! | ACTTTTGTTATTATTCTTTT+TGG | - | tig0019276:26601-26620 | Msa1372270:intron | 15.0% |
| !!! | CTTTTGTTATTATTCTTTTT+GGG | - | tig0019276:26602-26621 | Msa1372270:intron | 15.0% |
| !! | CAAACTATTTATAAATGTTA+AGG | - | tig0019276:26719-26738 | Msa1372270:intron | 15.0% |
| !! | TTGATAAAAATGAGAAAAAT+CGG | - | tig0019276:26941-26960 | Msa1372270:intron | 15.0% |
| !! | TTATTTACAAATCTATAGAT+TGG | + | tig0019276:27403-27422 | None:intergenic | 15.0% |
| !!! | ACATTTTAACTTTATCTATA+AGG | - | tig0019276:27562-27581 | Msa1372270:intron | 15.0% |
| !!! | ACAGTAATTTTGATTTTTTA+TGG | - | tig0019276:28724-28743 | Msa1372270:intron | 15.0% |
| !! | AAATTGAATCAGAAAGAAAA+TGG | - | tig0019276:25442-25461 | Msa1372270:three_prime_UTR | 20.0% |
| !! | ATTGAAAAATCAAATTGAAG+TGG | + | tig0019276:25599-25618 | None:intergenic | 20.0% |
| !! | ATTTCTTCTTTCAATAAGAA+GGG | + | tig0019276:25819-25838 | None:intergenic | 20.0% |
| !! | AATTTCTTCTTTCAATAAGA+AGG | + | tig0019276:25820-25839 | None:intergenic | 20.0% |
| !!! | ATACGTTTCAATTTTAACTT+TGG | - | tig0019276:26343-26362 | Msa1372270:intron | 20.0% |
| !! | TGTATACTTACATATGTATT+TGG | - | tig0019276:27182-27201 | Msa1372270:intron | 20.0% |
| !! | GTTATTAATAATGAGTTTCT+AGG | - | tig0019276:27280-27299 | Msa1372270:intron | 20.0% |
| !! | TTTGCAAATCTAATTAACAA+AGG | + | tig0019276:27635-27654 | None:intergenic | 20.0% |
| !!! | ACATTTTAACTTTATCCATA+AGG | - | tig0019276:27804-27823 | Msa1372270:intron | 20.0% |
| !! | TCGACAAATAATTATTTACA+AGG | + | tig0019276:28296-28315 | None:intergenic | 20.0% |
| !!! | TATGGAATTTTGTAGTTTTT+TGG | - | tig0019276:28742-28761 | Msa1372270:intron | 20.0% |
| !! | CCTTAAATGACAATATAAAA+TGG | + | tig0019276:28826-28845 | None:intergenic | 20.0% |
| !!! | CCATTTTATATTGTCATTTA+AGG | - | tig0019276:28823-28842 | Msa1372270:CDS | 20.0% |
| !! | ATTATACTTGAAATTAACAG+AGG | - | tig0019276:28876-28895 | Msa1372270:five_prime_UTR | 20.0% |
| !!! | GACAAACTAACCTTTATTTT+TGG | + | tig0019276:25966-25985 | None:intergenic | 25.0% |
| ! | ACATAAACAACATCAACAAA+AGG | + | tig0019276:25988-26007 | None:intergenic | 25.0% |
| ! | TTGTTTATGTTGTCTGATTT+GGG | - | tig0019276:25998-26017 | Msa1372270:intron | 25.0% |
| ! | TTAGTACACACATGTTAAAT+AGG | + | tig0019276:26385-26404 | None:intergenic | 25.0% |
| ! | AAAGATCCAACATCTAAATT+AGG | - | tig0019276:26455-26474 | Msa1372270:intron | 25.0% |
| ! | AATCATAAGAATAGAACAAG+AGG | + | tig0019276:26748-26767 | None:intergenic | 25.0% |
| !!! | TCTTTTGTTTTCTTTTCTCT+TGG | + | tig0019276:26914-26933 | None:intergenic | 25.0% |
| ! | AAGAGAAAAGAAAACAAAAG+AGG | - | tig0019276:26913-26932 | Msa1372270:intron | 25.0% |
| !! | TTACTGTTTTACAAGTTTGT+TGG | - | tig0019276:27137-27156 | Msa1372270:intron | 25.0% |
| ! | TGTAAGTATACAAATAGCAA+TGG | + | tig0019276:27174-27193 | None:intergenic | 25.0% |
| ! | GATAAAGTTAAAATGTGAAG+TGG | + | tig0019276:27800-27819 | None:intergenic | 25.0% |
| ! | AGCATAATATGAGAAAACAA+AGG | + | tig0019276:27877-27896 | None:intergenic | 25.0% |
| ! | ACTAGATGAAAAGATAACAA+AGG | + | tig0019276:28354-28373 | None:intergenic | 25.0% |
| ! | GAGTATATCATGATTATTCT+TGG | + | tig0019276:28455-28474 | None:intergenic | 25.0% |
| ! | TGATATACTCAATGTTAACA+AGG | - | tig0019276:28465-28484 | Msa1372270:intron | 25.0% |
| !! | ATCAAAATTACTGTGCTTTT+GGG | + | tig0019276:28718-28737 | None:intergenic | 25.0% |
| !! | AATCAAAATTACTGTGCTTT+TGG | + | tig0019276:28719-28738 | None:intergenic | 25.0% |
| !! | ATTTCAAGTATAATCACTTG+TGG | + | tig0019276:28870-28889 | None:intergenic | 25.0% |
| ACAAATCAAATGAGTGATGA+GGG | + | tig0019276:25405-25424 | None:intergenic | 30.0% | |
| AACAAATCAAATGAGTGATG+AGG | + | tig0019276:25406-25425 | None:intergenic | 30.0% | |
| TCAATTTCAGAGAGTTGAAA+CGG | + | tig0019276:25429-25448 | None:intergenic | 30.0% | |
| AAAGAAAATGGAGATTGAGA+TGG | - | tig0019276:25454-25473 | Msa1372270:three_prime_UTR | 30.0% | |
| GAAAAATCAAATTGAAGTGG+CGG | + | tig0019276:25596-25615 | None:intergenic | 30.0% | |
| !! | GTGAAAGAGTGTTTACAAAA+AGG | - | tig0019276:25668-25687 | Msa1372270:CDS | 30.0% |
| GTGTTTATCATTTGCTCATA+AGG | - | tig0019276:25883-25902 | Msa1372270:CDS | 30.0% | |
| !!! | AACCTTTATTTTTGGCAAAC+AGG | + | tig0019276:25958-25977 | None:intergenic | 30.0% |
| GTTGTTTATGTTGTCTGATT+TGG | - | tig0019276:25997-26016 | Msa1372270:intron | 30.0% | |
| AGAAGCTATTCCTATTATTG+AGG | - | tig0019276:26172-26191 | Msa1372270:CDS | 30.0% | |
| AATGTGGAATTACTTACCAT+CGG | + | tig0019276:26207-26226 | None:intergenic | 30.0% | |
| !!! | GCTGGTATTGATTTTTTTCT+GGG | - | tig0019276:26249-26268 | Msa1372270:intron | 30.0% |
| !! | TATCCTTCGTTTTGAATGTT+TGG | - | tig0019276:26294-26313 | Msa1372270:intron | 30.0% |
| TAACCAAACATTCAAAACGA+AGG | + | tig0019276:26300-26319 | None:intergenic | 30.0% | |
| CATGCTATGATTAAACATTG+TGG | + | tig0019276:26504-26523 | None:intergenic | 30.0% | |
| ATGTAGTGCTATATCGTTAA+TGG | - | tig0019276:26849-26868 | Msa1372270:intron | 30.0% | |
| ! | TTTTCTTTTCTCTTGGCAAA+AGG | + | tig0019276:26907-26926 | None:intergenic | 30.0% |
| TTGAAAAATGCTGCAAAGTT+TGG | - | tig0019276:26973-26992 | Msa1372270:intron | 30.0% | |
| TGAAAAATGCTGCAAAGTTT+GGG | - | tig0019276:26974-26993 | Msa1372270:intron | 30.0% | |
| !! | AGCTATCAATTAGTTTGTAC+AGG | - | tig0019276:27303-27322 | Msa1372270:CDS | 30.0% |
| !! | GCTATCAATTAGTTTGTACA+GGG | - | tig0019276:27304-27323 | Msa1372270:CDS | 30.0% |
| AATTGCAGTTTAGCCTATAT+AGG | - | tig0019276:27334-27353 | Msa1372270:CDS | 30.0% | |
| ATTGCAGTTTAGCCTATATA+GGG | - | tig0019276:27335-27354 | Msa1372270:CDS | 30.0% | |
| CAAAACTGTTAAACAGACTA+AGG | + | tig0019276:27503-27522 | None:intergenic | 30.0% | |
| GTTATTATGCTTCAGTGATT+TGG | - | tig0019276:27584-27603 | Msa1372270:intron | 30.0% | |
| AATGAAGCATAGAAACCTTA+TGG | + | tig0019276:27822-27841 | None:intergenic | 30.0% | |
| AATTCCACTGTAATTGTTAC+AGG | + | tig0019276:28020-28039 | None:intergenic | 30.0% | |
| TGTAACAATTACAGTGGAAT+TGG | - | tig0019276:28019-28038 | Msa1372270:intron | 30.0% | |
| GTAACAATTACAGTGGAATT+GGG | - | tig0019276:28020-28039 | Msa1372270:intron | 30.0% | |
| AAGTTTGACAAAAAATTGCC+AGG | - | tig0019276:28195-28214 | Msa1372270:CDS | 30.0% | |
| !! | TTCTTTCCTTTATGTTTTGG+AGG | + | tig0019276:28228-28247 | None:intergenic | 30.0% |
| ! | CGATTCTTTCCTTTATGTTT+TGG | + | tig0019276:28231-28250 | None:intergenic | 30.0% |
| ACATAAAGGAAAGAATCGAA+AGG | - | tig0019276:28233-28252 | Msa1372270:intron | 30.0% | |
| !! | TCAGAAGAAGCCTTTTAAAA+AGG | - | tig0019276:28676-28695 | Msa1372270:intron | 30.0% |
| !! | CAGAAGAAGCCTTTTAAAAA+GGG | - | tig0019276:28677-28696 | Msa1372270:intron | 30.0% |
| ! | TTTTTGGATACACTTTTCAG+TGG | - | tig0019276:28758-28777 | Msa1372270:CDS | 30.0% |
| ! | GTACATACATGTTTTTCTCG+GGG | + | tig0019276:25797-25816 | None:intergenic | 35.0% |
| ! | GGTACATACATGTTTTTCTC+GGG | + | tig0019276:25798-25817 | None:intergenic | 35.0% |
| ! | GGGTACATACATGTTTTTCT+CGG | + | tig0019276:25799-25818 | None:intergenic | 35.0% |
| ! | TATAATGTTTTCAGCTGCCA+AGG | - | tig0019276:25909-25928 | Msa1372270:CDS | 35.0% |
| GACCTGTTTGCCAAAAATAA+AGG | - | tig0019276:25953-25972 | Msa1372270:intron | 35.0% | |
| ! | CTTACTGAACTTTGTTATGC+AGG | - | tig0019276:26059-26078 | Msa1372270:CDS | 35.0% |
| GTTATGCAGGCATTATTAAG+CGG | - | tig0019276:26072-26091 | Msa1372270:CDS | 35.0% | |
| CAAGTTTATGATGAACCATC+TGG | - | tig0019276:26107-26126 | Msa1372270:CDS | 35.0% | |
| GTAGGTTTAGCCTCAATAAT+AGG | + | tig0019276:26185-26204 | None:intergenic | 35.0% | |
| TCGATAATAGGGATTGAATG+TGG | + | tig0019276:26223-26242 | None:intergenic | 35.0% | |
| AAAAAAATCAATACCAGCCC+AGG | + | tig0019276:26247-26266 | None:intergenic | 35.0% | |
| !!! | GGCTGGTATTGATTTTTTTC+TGG | - | tig0019276:26248-26267 | Msa1372270:intron | 35.0% |
| !!! | GGTATTGATTTTTTTCTGGG+TGG | - | tig0019276:26252-26271 | Msa1372270:intron | 35.0% |
| AATGTTTGGTTATCGCTGTT+GGG | - | tig0019276:26308-26327 | Msa1372270:intron | 35.0% | |
| ! | TTTAACTTTGGATACTTGCG+AGG | - | tig0019276:26355-26374 | Msa1372270:intron | 35.0% |
| ACATTGAATTTGACCTCCTT+TGG | - | tig0019276:26425-26444 | Msa1372270:intron | 35.0% | |
| ATCTTTAAACATGCCAAAGG+AGG | + | tig0019276:26441-26460 | None:intergenic | 35.0% | |
| TGGATCTTTAAACATGCCAA+AGG | + | tig0019276:26444-26463 | None:intergenic | 35.0% | |
| ACGGTTCCTAATTTAGATGT+TGG | + | tig0019276:26464-26483 | None:intergenic | 35.0% | |
| ACTACTCTTGAAAGCTCATA+AGG | + | tig0019276:26534-26553 | None:intergenic | 35.0% | |
| GAAAAATGCTGCAAAGTTTG+GGG | - | tig0019276:26975-26994 | Msa1372270:intron | 35.0% | |
| AATGGTTAAGAGAGTTACCT+AGG | + | tig0019276:27006-27025 | None:intergenic | 35.0% | |
| ! | TCAAGGCTAGTTATTGGAAA+TGG | + | tig0019276:27024-27043 | None:intergenic | 35.0% |
| !! | ATTTCCAATAACTAGCCTTG+AGG | - | tig0019276:27023-27042 | Msa1372270:intron | 35.0% |
| ! | AAAACCTCAAGGCTAGTTAT+TGG | + | tig0019276:27030-27049 | None:intergenic | 35.0% |
| AACAATGCATGGATATGTCA+AGG | + | tig0019276:27220-27239 | None:intergenic | 35.0% | |
| GTTCAACAGAAAACAATGCA+TGG | + | tig0019276:27231-27250 | None:intergenic | 35.0% | |
| TAGGCTAAACTGCAATTAAG+TGG | + | tig0019276:27331-27350 | None:intergenic | 35.0% | |
| ATGATAGCTTCACCCTATAT+AGG | + | tig0019276:27350-27369 | None:intergenic | 35.0% | |
| AAAGTCCTTAGTCTGTTCAA+AGG | - | tig0019276:27726-27745 | Msa1372270:intron | 35.0% | |
| CAAAACCTTTGAACAGACTA+AGG | + | tig0019276:27734-27753 | None:intergenic | 35.0% | |
| ACACAACAGTAGATAACTGT+TGG | + | tig0019276:27954-27973 | None:intergenic | 35.0% | |
| TACACCTGTAACAATTACAG+TGG | - | tig0019276:28013-28032 | Msa1372270:intron | 35.0% | |
| AAGGTTACCAAGGATGAATT+AGG | - | tig0019276:28129-28148 | Msa1372270:CDS | 35.0% | |
| GAAAAGCCTCCAAAACATAA+AGG | - | tig0019276:28219-28238 | Msa1372270:intron | 35.0% | |
| !! | TCTTTTCATCTAGTTCCTAC+CGG | - | tig0019276:28360-28379 | Msa1372270:CDS | 35.0% |
| AATTGTACTCTCTGCATTCT+AGG | - | tig0019276:28568-28587 | Msa1372270:CDS | 35.0% | |
| CCTTCGATTTATCATTCCTT+CGG | + | tig0019276:28628-28647 | None:intergenic | 35.0% | |
| ! | TTCTTGGCACCCTTTTTAAA+AGG | + | tig0019276:28689-28708 | None:intergenic | 35.0% |
| !! | TTTAAAAAGGGTGCCAAGAA+AGG | - | tig0019276:28689-28708 | Msa1372270:intron | 35.0% |
| !! | GTGATGAGGGTTGTTTTGTA+AGG | + | tig0019276:25392-25411 | None:intergenic | 40.0% |
| GAAAATGGAGATTGAGATGG+AGG | - | tig0019276:25457-25476 | Msa1372270:three_prime_UTR | 40.0% | |
| ! | AATTTGTTCGAGGTTGACCT+CGG | - | tig0019276:25488-25507 | Msa1372270:three_prime_UTR | 40.0% |
| GTATGAATGATGAGAGTCGA+AGG | + | tig0019276:25525-25544 | None:intergenic | 40.0% | |
| CATACCTGGATTGTTGAGAA+GGG | + | tig0019276:25547-25566 | None:intergenic | 40.0% | |
| ACATACCTGGATTGTTGAGA+AGG | + | tig0019276:25548-25567 | None:intergenic | 40.0% | |
| CCTTCAACATCTTGAGTAGA+GGG | + | tig0019276:25737-25756 | None:intergenic | 40.0% | |
| ACCTTCAACATCTTGAGTAG+AGG | + | tig0019276:25738-25757 | None:intergenic | 40.0% | |
| ! | ATGTTTTTCTCGGGGTAATC+TGG | + | tig0019276:25789-25808 | None:intergenic | 40.0% |
| GCCAAAACCTCCTACTAAAT+GGG | - | tig0019276:25931-25950 | Msa1372270:intron | 40.0% | |
| ! | TCCCATTTAGTAGGAGGTTT+TGG | + | tig0019276:25935-25954 | None:intergenic | 40.0% |
| !!! | GTTGTCTGATTTGGGCTTTT+CGG | - | tig0019276:26006-26025 | Msa1372270:intron | 40.0% |
| AGGCATTATTAAGCGGAACA+AGG | - | tig0019276:26079-26098 | Msa1372270:CDS | 40.0% | |
| TGGAATTACTTACCATCGGT+AGG | + | tig0019276:26203-26222 | None:intergenic | 40.0% | |
| TCAATCCCTATTATCGAACC+TGG | - | tig0019276:26226-26245 | Msa1372270:intron | 40.0% | |
| CAATCCCTATTATCGAACCT+GGG | - | tig0019276:26227-26246 | Msa1372270:intron | 40.0% | |
| GGTGGTTGAAAAATGAGACT+TGG | - | tig0019276:26270-26289 | Msa1372270:intron | 40.0% | |
| GAATGTTTGGTTATCGCTGT+TGG | - | tig0019276:26307-26326 | Msa1372270:intron | 40.0% | |
| ATGTTTGGTTATCGCTGTTG+GGG | - | tig0019276:26309-26328 | Msa1372270:intron | 40.0% | |
| !! | GGACGATCTGATGCTTTTTA+CGG | + | tig0019276:26483-26502 | None:intergenic | 40.0% |
| !!! | GTTTTGAAGTCCTGACTGAT+GGG | + | tig0019276:26569-26588 | None:intergenic | 40.0% |
| !!! | AGTTTTGAAGTCCTGACTGA+TGG | + | tig0019276:26570-26589 | None:intergenic | 40.0% |
| TCAGTCAGGACTTCAAAACT+TGG | - | tig0019276:26570-26589 | Msa1372270:intron | 40.0% | |
| TGCATGGATATGTCAAGGTA+GGG | + | tig0019276:27215-27234 | None:intergenic | 40.0% | |
| ATGCATGGATATGTCAAGGT+AGG | + | tig0019276:27216-27235 | None:intergenic | 40.0% | |
| GACGCGTAGTTACTCATAAT+TGG | + | tig0019276:27778-27797 | None:intergenic | 40.0% | |
| TGTTATAGGCAAAGATGTCG+CGG | + | tig0019276:28088-28107 | None:intergenic | 40.0% | |
| ACCACAAAAGAAGGTTACCA+AGG | - | tig0019276:28119-28138 | Msa1372270:CDS | 40.0% | |
| !! | TCCTTGGTAACCTTCTTTTG+TGG | + | tig0019276:28123-28142 | None:intergenic | 40.0% |
| TACACTGCCTAATTCATCCT+TGG | + | tig0019276:28139-28158 | None:intergenic | 40.0% | |
| ! | GCTTTTCTCCTTCTTCACAT+TGG | + | tig0019276:28606-28625 | None:intergenic | 40.0% |
| CCGAAGGAATGATAAATCGA+AGG | - | tig0019276:28625-28644 | Msa1372270:CDS | 40.0% | |
| ! | GGCTGCTAAGAATTTGTTCG+AGG | - | tig0019276:25478-25497 | Msa1372270:three_prime_UTR | 45.0% |
| GGTTGACCTCGGTAATCTAA+TGG | - | tig0019276:25499-25518 | Msa1372270:three_prime_UTR | 45.0% | |
| CATACCCTTCTCAACAATCC+AGG | - | tig0019276:25540-25559 | Msa1372270:three_prime_UTR | 45.0% | |
| ! | AGAAAGGAGGTGTACATACC+TGG | + | tig0019276:25561-25580 | None:intergenic | 45.0% |
| CCCTCTACTCAAGATGTTGA+AGG | - | tig0019276:25734-25753 | Msa1372270:intron | 45.0% | |
| ! | TTTTTCTCGGGGTAATCTGG+TGG | + | tig0019276:25786-25805 | None:intergenic | 45.0% |
| !! | TTAGTAGGAGGTTTTGGCCT+TGG | + | tig0019276:25929-25948 | None:intergenic | 45.0% |
| GGCCAAAACCTCCTACTAAA+TGG | - | tig0019276:25930-25949 | Msa1372270:intron | 45.0% | |
| AACAGGTCCCATTTAGTAGG+AGG | + | tig0019276:25941-25960 | None:intergenic | 45.0% | |
| GCAAACAGGTCCCATTTAGT+AGG | + | tig0019276:25944-25963 | None:intergenic | 45.0% | |
| ! | ATGATGAACCATCTGGAACC+TGG | - | tig0019276:26114-26133 | Msa1372270:CDS | 45.0% |
| ATATCCATGTCTGCGTTTCC+AGG | + | tig0019276:26135-26154 | None:intergenic | 45.0% | |
| ATTGAGGCTAAACCTACCGA+TGG | - | tig0019276:26188-26207 | Msa1372270:CDS | 45.0% | |
| ! | CCTGACTGATGGGTAAATCA+TGG | + | tig0019276:26559-26578 | None:intergenic | 45.0% |
| CCATGATTTACCCATCAGTC+AGG | - | tig0019276:26556-26575 | Msa1372270:intron | 45.0% | |
| ! | ACATTTTGCAGATCCAGACG+AGG | - | tig0019276:26879-26898 | Msa1372270:intron | 45.0% |
| ! | CAAAGTTTGGGGCTTTACCT+AGG | - | tig0019276:26986-27005 | Msa1372270:intron | 45.0% |
| ACCATGCAACGAAAACCTCA+AGG | + | tig0019276:27041-27060 | None:intergenic | 45.0% | |
| CACGAGCAGATGATGTATAG+TGG | + | tig0019276:27084-27103 | None:intergenic | 45.0% | |
| ATACATCATCTGCTCGTGCT+TGG | - | tig0019276:27086-27105 | Msa1372270:intron | 45.0% | |
| GGAGTTTGCACATAGTTCAG+AGG | + | tig0019276:27482-27501 | None:intergenic | 45.0% | |
| GCGACATCTTTGCCTATAAC+AGG | - | tig0019276:28087-28106 | Msa1372270:intron | 45.0% | |
| ! | AACCTTCTTTTGTGGTGCGT+GGG | + | tig0019276:28115-28134 | None:intergenic | 45.0% |
| ! | TAACCTTCTTTTGTGGTGCG+TGG | + | tig0019276:28116-28135 | None:intergenic | 45.0% |
| GATGAATTAGGCAGTGTAGC+AGG | - | tig0019276:28141-28160 | Msa1372270:CDS | 45.0% | |
| CACAGTGACCAATGTGAAGA+AGG | - | tig0019276:28595-28614 | Msa1372270:CDS | 45.0% | |
| TGAAGAAGGAGAAAAGCCGA+AGG | - | tig0019276:28609-28628 | Msa1372270:CDS | 45.0% | |
| !!! | TGCTTTTGGGTTGCCTTTCT+TGG | + | tig0019276:28705-28724 | None:intergenic | 45.0% |
| GTATAATCACTTGTGGTGCC+TGG | + | tig0019276:28863-28882 | None:intergenic | 45.0% | |
| !!! | AAAAAATTGAAAATTTTTTA+TGG | + | tig0019276:27691-27710 | None:intergenic | 5.0% |
| CGAAGGCCATTAGATTACCG+AGG | + | tig0019276:25508-25527 | None:intergenic | 50.0% | |
| CCAGCCCAGGTTCGATAATA+GGG | + | tig0019276:26234-26253 | None:intergenic | 50.0% | |
| ACCAGCCCAGGTTCGATAAT+AGG | + | tig0019276:26235-26254 | None:intergenic | 50.0% | |
| TATCGCTGTTGGGGACAACT+AGG | - | tig0019276:26318-26337 | Msa1372270:intron | 50.0% | |
| TTGGCAAAAGGATCCTCGTC+TGG | + | tig0019276:26895-26914 | None:intergenic | 50.0% | |
| ! | GCCTTGAGGTTTTCGTTGCA+TGG | - | tig0019276:27037-27056 | Msa1372270:intron | 50.0% |
| ACCATGCAGCCATGTTCAGT+TGG | - | tig0019276:28062-28081 | Msa1372270:intron | 50.0% | |
| AACCCACGCACCACAAAAGA+AGG | - | tig0019276:28110-28129 | Msa1372270:CDS | 50.0% | |
| AAACTTCCCACCACTAGCTG+TGG | + | tig0019276:28181-28200 | None:intergenic | 50.0% | |
| !!! | TGTTTTGGAGGCTTTTCGCC+TGG | + | tig0019276:28216-28235 | None:intergenic | 50.0% |
| TAGTTCCTACCGGTAGCAGA+AGG | - | tig0019276:28370-28389 | Msa1372270:intron | 50.0% | |
| TACCGGTAGCAGAAGGAACA+GGG | - | tig0019276:28377-28396 | Msa1372270:intron | 50.0% | |
| AGGAACAGGGGTAGGATCAA+AGG | - | tig0019276:28390-28409 | Msa1372270:intron | 50.0% | |
| AGGGGTAGGATCAAAGGAGA+GGG | - | tig0019276:28396-28415 | Msa1372270:intron | 50.0% | |
| AAGGCTTCCATCACAACACC+AGG | - | tig0019276:28842-28861 | Msa1372270:exon | 50.0% | |
| GCGCTCGAAAGGAAGAAAGG+AGG | + | tig0019276:25574-25593 | None:intergenic | 55.0% | |
| TGGGGCAGGCAATTGAACGA+GGG | + | tig0019276:25762-25781 | None:intergenic | 55.0% | |
| TTGGGGCAGGCAATTGAACG+AGG | + | tig0019276:25763-25782 | None:intergenic | 55.0% | |
| TCGGGGTAATCTGGTGGTTG+GGG | + | tig0019276:25780-25799 | None:intergenic | 55.0% | |
| CTCGGGGTAATCTGGTGGTT+GGG | + | tig0019276:25781-25800 | None:intergenic | 55.0% | |
| TCTCGGGGTAATCTGGTGGT+TGG | + | tig0019276:25782-25801 | None:intergenic | 55.0% | |
| CTGCGTTTCCAGGTTCCAGA+TGG | + | tig0019276:26125-26144 | None:intergenic | 55.0% | |
| GGAACCTGGAAACGCAGACA+TGG | - | tig0019276:26128-26147 | Msa1372270:CDS | 55.0% | |
| CCCTATTATCGAACCTGGGC+TGG | - | tig0019276:26231-26250 | Msa1372270:intron | 55.0% | |
| GCCAACTGAACATGGCTGCA+TGG | + | tig0019276:28066-28085 | None:intergenic | 55.0% | |
| ATGTCGCGGCCAACTGAACA+TGG | + | tig0019276:28074-28093 | None:intergenic | 55.0% | |
| GGTGCGTGGGTTCCTGTTAT+AGG | + | tig0019276:28102-28121 | None:intergenic | 55.0% | |
| ACCACTAGCTGTGGCAGTTG+AGG | + | tig0019276:28172-28191 | None:intergenic | 55.0% | |
| TCAACTGCCACAGCTAGTGG+TGG | - | tig0019276:28171-28190 | Msa1372270:CDS | 55.0% | |
| CAACTGCCACAGCTAGTGGT+GGG | - | tig0019276:28172-28191 | Msa1372270:CDS | 55.0% | |
| CTGTTCCTTCTGCTACCGGT+AGG | + | tig0019276:28378-28397 | None:intergenic | 55.0% | |
| CTACCGGTAGCAGAAGGAAC+AGG | - | tig0019276:28376-28395 | Msa1372270:intron | 55.0% | |
| ACCGGTAGCAGAAGGAACAG+GGG | - | tig0019276:28378-28397 | Msa1372270:intron | 55.0% | |
| ACCCCTGTTCCTTCTGCTAC+CGG | + | tig0019276:28382-28401 | None:intergenic | 55.0% | |
| GTAGCAGAAGGAACAGGGGT+AGG | - | tig0019276:28382-28401 | Msa1372270:intron | 55.0% | |
| CAGGGGTAGGATCAAAGGAG+AGG | - | tig0019276:28395-28414 | Msa1372270:intron | 55.0% | |
| !! | TGTGGTGCCTGGTGTTGTGA+TGG | + | tig0019276:28852-28871 | None:intergenic | 55.0% |
| GCGGCGCTCGAAAGGAAGAA+AGG | + | tig0019276:25577-25596 | None:intergenic | 60.0% | |
| TTGAAGTGGCGGCGCTCGAA+AGG | + | tig0019276:25585-25604 | None:intergenic | 60.0% | |
| GGGGCAGGCAATTGAACGAG+GGG | + | tig0019276:25761-25780 | None:intergenic | 60.0% | |
| GGTAATCTGGTGGTTGGGGC+AGG | + | tig0019276:25776-25795 | None:intergenic | 60.0% | |
| GCCTCAACTGCCACAGCTAG+TGG | - | tig0019276:28168-28187 | Msa1372270:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019276 | gene | 25359 | 28950 | 25359 | ID=Msa1372270;Name=Msa1372270 |
| tig0019276 | mRNA | 25359 | 28950 | 25359 | ID=Msa1372270-mRNA-1;Parent=Msa1372270;Name=Msa1372270-mRNA-1;_AED=0.09;_eAED=0.09;_QI=102|1|1|1|1|1|8|220|329 |
| tig0019276 | exon | 25359 | 25719 | 25359 | ID=Msa1372270-mRNA-1:exon:2741;Parent=Msa1372270-mRNA-1 |
| tig0019276 | exon | 25823 | 25936 | 25823 | ID=Msa1372270-mRNA-1:exon:2740;Parent=Msa1372270-mRNA-1 |
| tig0019276 | exon | 26055 | 26238 | 26055 | ID=Msa1372270-mRNA-1:exon:2739;Parent=Msa1372270-mRNA-1 |
| tig0019276 | exon | 27302 | 27419 | 27302 | ID=Msa1372270-mRNA-1:exon:2738;Parent=Msa1372270-mRNA-1 |
| tig0019276 | exon | 28100 | 28228 | 28100 | ID=Msa1372270-mRNA-1:exon:2737;Parent=Msa1372270-mRNA-1 |
| tig0019276 | exon | 28335 | 28386 | 28335 | ID=Msa1372270-mRNA-1:exon:2736;Parent=Msa1372270-mRNA-1 |
| tig0019276 | exon | 28501 | 28651 | 28501 | ID=Msa1372270-mRNA-1:exon:2735;Parent=Msa1372270-mRNA-1 |
| tig0019276 | exon | 28748 | 28950 | 28748 | ID=Msa1372270-mRNA-1:exon:2734;Parent=Msa1372270-mRNA-1 |
| tig0019276 | five_prime_UTR | 28849 | 28950 | 28849 | ID=Msa1372270-mRNA-1:five_prime_utr;Parent=Msa1372270-mRNA-1 |
| tig0019276 | CDS | 28748 | 28848 | 28748 | ID=Msa1372270-mRNA-1:cds;Parent=Msa1372270-mRNA-1 |
| tig0019276 | CDS | 28501 | 28651 | 28501 | ID=Msa1372270-mRNA-1:cds;Parent=Msa1372270-mRNA-1 |
| tig0019276 | CDS | 28335 | 28386 | 28335 | ID=Msa1372270-mRNA-1:cds;Parent=Msa1372270-mRNA-1 |
| tig0019276 | CDS | 28100 | 28228 | 28100 | ID=Msa1372270-mRNA-1:cds;Parent=Msa1372270-mRNA-1 |
| tig0019276 | CDS | 27302 | 27419 | 27302 | ID=Msa1372270-mRNA-1:cds;Parent=Msa1372270-mRNA-1 |
| tig0019276 | CDS | 26055 | 26238 | 26055 | ID=Msa1372270-mRNA-1:cds;Parent=Msa1372270-mRNA-1 |
| tig0019276 | CDS | 25823 | 25936 | 25823 | ID=Msa1372270-mRNA-1:cds;Parent=Msa1372270-mRNA-1 |
| tig0019276 | CDS | 25579 | 25719 | 25579 | ID=Msa1372270-mRNA-1:cds;Parent=Msa1372270-mRNA-1 |
| tig0019276 | three_prime_UTR | 25359 | 25578 | 25359 | ID=Msa1372270-mRNA-1:three_prime_utr;Parent=Msa1372270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
