Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0312730 | XP_003593568.1 | 99.003 | 301 | 3 | 0 | 1 | 301 | 1 | 301 | 0.0 | 613 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0312730 | sp|Q9UET6|TRM7_HUMAN | 59.000 | 300 | 105 | 2 | 1 | 300 | 1 | 282 | 1.31e-116 | 342 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0272520 | Msa0312730 | 0.861924 | 7.284642e-64 | -8.615850e-47 |
| Msa0312730 | Msa0981780 | 0.812019 | 5.231984e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0312730 | MtrunA17_Chr2g0282131 | 99.003 | 301 | 3 | 0 | 1 | 301 | 1 | 301 | 0.0 | 613 |
| Msa0312730 | MtrunA17_Chr4g0040381 | 33.473 | 239 | 137 | 7 | 1 | 230 | 1 | 226 | 1.05e-34 | 133 |
| Msa0312730 | MtrunA17_Chr4g0035141 | 33.333 | 225 | 131 | 6 | 12 | 230 | 15 | 226 | 1.89e-32 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0312730 | AT5G01230.1 | 92.715 | 302 | 21 | 1 | 1 | 301 | 1 | 302 | 0.0 | 578 |
| Msa0312730 | AT5G01230.2 | 100.000 | 57 | 0 | 0 | 1 | 57 | 1 | 57 | 4.79e-35 | 122 |
| Msa0312730 | AT4G25730.1 | 34.167 | 240 | 134 | 8 | 1 | 231 | 1 | 225 | 2.57e-34 | 132 |
Find 114 sgRNAs with CRISPR-Local
Find 361 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGCAGTGATAATATTTA+TGG | 0.099808 | 2_4:-7884115 | Msa0312730:three_prime_UTR |
| CACTGATTCGTAGTGTTATT+TGG | 0.132341 | 2_4:-7884151 | Msa0312730:three_prime_UTR |
| AATGGGATATACACCTTATT+AGG | 0.161234 | 2_4:+7884379 | None:intergenic |
| ATCGGAAAAGATTACAAGTT+TGG | 0.240764 | 2_4:+7883989 | None:intergenic |
| TTTGTTGGATAGTTTGATTC+AGG | 0.249399 | 2_4:-7889465 | Msa0312730:five_prime_UTR |
| AGAAGCCGATGAAGATCTTT+TGG | 0.261957 | 2_4:+7884732 | None:intergenic |
| CTAGCTTGCGGGGACCTTAC+TGG | 0.280561 | 2_4:-7884355 | Msa0312730:CDS |
| TTCATTGCGAAGATATTTAG+AGG | 0.318467 | 2_4:-7885890 | Msa0312730:CDS |
| ATATCCCATTTCTAGCTTGC+GGG | 0.337528 | 2_4:-7884366 | Msa0312730:CDS |
| CCGATGGATAATGTTGATAA+TGG | 0.357652 | 2_4:-7883971 | Msa0312730:three_prime_UTR |
| AACTCTAGAGCTCTCTTGTA+AGG | 0.363418 | 2_4:+7884244 | None:intergenic |
| TGCTCCAGGCAGCTGGAGTC+AGG | 0.367296 | 2_4:-7888848 | Msa0312730:intron |
| TGTGATTCTGTGAAATTTGT+TGG | 0.370019 | 2_4:-7889480 | Msa0312730:five_prime_UTR |
| GCATCAGGTGCAAGCTTGGC+TGG | 0.374216 | 2_4:+7887885 | None:intergenic |
| GCAAAGCTTCAAGGGATAAG+AGG | 0.379131 | 2_4:-7889286 | Msa0312730:CDS |
| GTTTGGGTGATGATTATCTA+AGG | 0.388429 | 2_4:+7884006 | None:intergenic |
| ATTTAATTTGCATCATAAAC+CGG | 0.395472 | 2_4:+7889642 | None:intergenic |
| CTTTGCATCAGGTGCAAGCT+TGG | 0.398733 | 2_4:+7887881 | None:intergenic |
| TATCCACTGCCTAAAGTTGC+TGG | 0.400318 | 2_4:-7884313 | Msa0312730:CDS |
| CAAATACCTGACAGTATAGA+AGG | 0.404894 | 2_4:+7885855 | None:intergenic |
| AGGTCCCCGCAAGCTAGAAA+TGG | 0.414251 | 2_4:+7884361 | None:intergenic |
| TCGGAAAAGATTACAAGTTT+GGG | 0.416079 | 2_4:+7883990 | None:intergenic |
| GAGAAGGTTGGAAGTCCATC+AGG | 0.420443 | 2_4:-7884708 | Msa0312730:CDS |
| ACTAAAGTTCTTACCTATGC+TGG | 0.426966 | 2_4:+7885153 | None:intergenic |
| CAGCCAATGGCTCCGATTGA+AGG | 0.431915 | 2_4:-7887382 | Msa0312730:CDS |
| ATGGGATATACACCTTATTA+GGG | 0.432233 | 2_4:+7884380 | None:intergenic |
| ATAGTTTGATTCAGGAGAAA+AGG | 0.443837 | 2_4:-7889457 | Msa0312730:intron |
| TGGAAAACTTACTTTGCATC+AGG | 0.444078 | 2_4:+7887870 | None:intergenic |
| AAATCAATAGCTACAATAAG+AGG | 0.445424 | 2_4:+7887406 | None:intergenic |
| TATGTGCTGCTCCAGGCAGC+TGG | 0.452462 | 2_4:-7888855 | Msa0312730:CDS |
| TGCTTACTGCAAGTATGAGT+TGG | 0.458021 | 2_4:+7886291 | None:intergenic |
| AAACCATGGGCAAAGCTTCA+AGG | 0.459913 | 2_4:-7889295 | Msa0312730:exon |
| GAGTTTGCAGATTGTGTTAG+TGG | 0.463559 | 2_4:-7884415 | Msa0312730:intron |
| AGGAATAATTTGTATTCACT+TGG | 0.470280 | 2_4:+7884026 | None:intergenic |
| CATCGGCTTCTTGAGAAGGT+TGG | 0.470461 | 2_4:-7884720 | Msa0312730:CDS |
| CAACAAAAGACTCGGAAGAA+AGG | 0.471356 | 2_4:+7884051 | None:intergenic |
| TTCATCCATGTCATGAAGTC+CGG | 0.472049 | 2_4:+7886325 | None:intergenic |
| ATCAGTGGATATGCAAGATC+AGG | 0.472705 | 2_4:+7884167 | None:intergenic |
| TTACTGGATATGATTCTGAT+AGG | 0.474435 | 2_4:-7884339 | Msa0312730:CDS |
| ATCCCTTGAAGCTTTGCCCA+TGG | 0.475121 | 2_4:+7889292 | None:intergenic |
| GCTTACTGCAAGTATGAGTT+GGG | 0.475427 | 2_4:+7886292 | None:intergenic |
| TGAAGGTGTTATCCAGGTGC+AGG | 0.479392 | 2_4:-7887365 | Msa0312730:CDS |
| GGCTTTGCAAAAGTCACCAC+AGG | 0.483167 | 2_4:+7885193 | None:intergenic |
| ATCCACTGCCTAAAGTTGCT+GGG | 0.488195 | 2_4:-7884312 | Msa0312730:CDS |
| CCATCAGGGGTAGATGATAC+AGG | 0.496409 | 2_4:-7884693 | Msa0312730:intron |
| AGCTATTGATTTGCAGCCAA+TGG | 0.497084 | 2_4:-7887395 | Msa0312730:CDS |
| TATATCCCATTTCTAGCTTG+CGG | 0.497714 | 2_4:-7884367 | Msa0312730:CDS |
| TCTTCATCGGCTTCTTGAGA+AGG | 0.501095 | 2_4:-7884724 | Msa0312730:CDS |
| AGTACCTGACTCCAGCTGCC+TGG | 0.508337 | 2_4:+7888844 | None:intergenic |
| ACACCTTCAATCGGAGCCAT+TGG | 0.510050 | 2_4:+7887379 | None:intergenic |
| TTGGATTGAATCCTTCTGGA+GGG | 0.511479 | 2_4:+7884751 | None:intergenic |
| GGGGCAATAGGAGGTTGTAC+TGG | 0.511552 | 2_4:+7884268 | None:intergenic |
| GTGGTTGGAAGGCCCTAATA+AGG | 0.511729 | 2_4:-7884392 | Msa0312730:CDS |
| GGTCCCCGCAAGCTAGAAAT+GGG | 0.513086 | 2_4:+7884362 | None:intergenic |
| TCCGATTGAAGGTGTTATCC+AGG | 0.517786 | 2_4:-7887371 | Msa0312730:CDS |
| TAGTTATATCACCCTGCACC+TGG | 0.518978 | 2_4:+7887353 | None:intergenic |
| CACAAGCCTTCTATACTGTC+AGG | 0.519250 | 2_4:-7885861 | Msa0312730:intron |
| TATCAGAATCATATCCAGTA+AGG | 0.519570 | 2_4:+7884341 | None:intergenic |
| ATTGAAGAAGCCATGAACTT+AGG | 0.519813 | 2_4:+7889587 | None:intergenic |
| ATATGCAAGATCAGGAATCC+AGG | 0.523232 | 2_4:+7884175 | None:intergenic |
| CAGGTGCAAGCTTGGCTGGA+AGG | 0.527605 | 2_4:+7887889 | None:intergenic |
| ACTCTAGAGCTCTCTTGTAA+GGG | 0.527637 | 2_4:+7884245 | None:intergenic |
| TGCGAAGATATTTAGAGGAA+AGG | 0.528045 | 2_4:-7885885 | Msa0312730:CDS |
| TCAATCCAAAAGATCTTCAT+CGG | 0.528148 | 2_4:-7884737 | Msa0312730:CDS |
| GTAGATTTATGTGCTGCTCC+AGG | 0.528472 | 2_4:-7888862 | Msa0312730:CDS |
| TGTGTTAGTGGGTGGTTGGA+AGG | 0.530748 | 2_4:-7884403 | Msa0312730:CDS |
| ACCTGGATAACACCTTCAAT+CGG | 0.534040 | 2_4:+7887370 | None:intergenic |
| TGGATTGAATCCTTCTGGAG+GGG | 0.538206 | 2_4:+7884752 | None:intergenic |
| TACCGAAAAGCGAAAGAAGA+AGG | 0.538413 | 2_4:-7889167 | Msa0312730:CDS |
| GCCGACCTTGTTGTGTGCGA+TGG | 0.542550 | 2_4:-7886592 | Msa0312730:CDS |
| AACCATGGGCAAAGCTTCAA+GGG | 0.544253 | 2_4:-7889294 | Msa0312730:exon |
| AGTTTGCAGATTGTGTTAGT+GGG | 0.550426 | 2_4:-7884414 | Msa0312730:intron |
| CCTGTATCATCTACCCCTGA+TGG | 0.551247 | 2_4:+7884693 | None:intergenic |
| AGATTGTGTTAGTGGGTGGT+TGG | 0.553179 | 2_4:-7884407 | Msa0312730:CDS |
| AGTAGTCGTAATTCCAGCAT+AGG | 0.557095 | 2_4:-7885166 | Msa0312730:intron |
| GGAATAATTTGTATTCACTT+GGG | 0.559032 | 2_4:+7884027 | None:intergenic |
| TCCACTGCCTAAAGTTGCTG+GGG | 0.574703 | 2_4:-7884311 | Msa0312730:CDS |
| GAAAATTACTCCCCTCCAGA+AGG | 0.574957 | 2_4:-7884762 | Msa0312730:CDS |
| TTGCAGATTGTGTTAGTGGG+TGG | 0.575776 | 2_4:-7884411 | Msa0312730:intron |
| CTCTAGAGCTCTCTTGTAAG+GGG | 0.577035 | 2_4:+7884246 | None:intergenic |
| GAAAAGCGAAAGAAGAAGGT+TGG | 0.578774 | 2_4:-7889163 | Msa0312730:CDS |
| CAAAGCTTCAAGGGATAAGA+GGG | 0.579751 | 2_4:-7889285 | Msa0312730:intron |
| CTCATGTACTGAAGGAAGGA+GGG | 0.582274 | 2_4:-7885916 | Msa0312730:CDS |
| AGAACTTGAAAATCTCTCCC+TGG | 0.583460 | 2_4:-7884193 | Msa0312730:exon |
| GTGTGCGATGGTGCTCCTGA+TGG | 0.586485 | 2_4:-7886580 | Msa0312730:intron |
| TATCCCATTTCTAGCTTGCG+GGG | 0.586932 | 2_4:-7884365 | Msa0312730:CDS |
| TAATGCTCGGACTGCTGAAG+TGG | 0.587470 | 2_4:-7887332 | Msa0312730:intron |
| GTTTCTTAGGCAAGTAAGTG+AGG | 0.591445 | 2_4:-7889321 | Msa0312730:intron |
| AATTGTTACTCATGTACTGA+AGG | 0.593299 | 2_4:-7885924 | Msa0312730:CDS |
| GTTACTCATGTACTGAAGGA+AGG | 0.596222 | 2_4:-7885920 | Msa0312730:CDS |
| TTTGGATTGAATCCTTCTGG+AGG | 0.598385 | 2_4:+7884750 | None:intergenic |
| GAAGAAGCCATGAACTTAGG+AGG | 0.598700 | 2_4:+7889590 | None:intergenic |
| CTAGAGCTCTCTTGTAAGGG+GGG | 0.605069 | 2_4:+7884248 | None:intergenic |
| AGAAGGTTGGAAGTCCATCA+GGG | 0.611108 | 2_4:-7884707 | Msa0312730:CDS |
| CAAATAACACTACGAATCAG+TGG | 0.612508 | 2_4:+7884152 | None:intergenic |
| ACTCATGTACTGAAGGAAGG+AGG | 0.615741 | 2_4:-7885917 | Msa0312730:CDS |
| CCATTATCAACATTATCCAT+CGG | 0.624889 | 2_4:+7883971 | None:intergenic |
| ACCATCGCACACAACAAGGT+CGG | 0.624891 | 2_4:+7886591 | None:intergenic |
| AGTAAGTGAGGAATAAACCA+TGG | 0.627845 | 2_4:-7889309 | Msa0312730:exon |
| TATGCAAGATCAGGAATCCA+GGG | 0.628400 | 2_4:+7884176 | None:intergenic |
| GAGCACCATCGCACACAACA+AGG | 0.633636 | 2_4:+7886587 | None:intergenic |
| TCTAGAGCTCTCTTGTAAGG+GGG | 0.635566 | 2_4:+7884247 | None:intergenic |
| ATAATATGAGTAAAATTGTG+AGG | 0.639750 | 2_4:-7883906 | None:intergenic |
| GAAGGTGTTATCCAGGTGCA+GGG | 0.645167 | 2_4:-7887364 | Msa0312730:CDS |
| AGGGTGATATAACTAATGCT+CGG | 0.647655 | 2_4:-7887345 | Msa0312730:CDS |
| GTAAGTGAGGAATAAACCAT+GGG | 0.651712 | 2_4:-7889308 | Msa0312730:exon |
| AAAGACTCGGAAGAAAGGAA+AGG | 0.655032 | 2_4:+7884056 | None:intergenic |
| ACTTGGGACAACAAAAGACT+CGG | 0.658387 | 2_4:+7884043 | None:intergenic |
| GCTTTGCAAAAGTCACCACA+GGG | 0.664958 | 2_4:+7885194 | None:intergenic |
| TAGAGCTCTCTTGTAAGGGG+GGG | 0.669752 | 2_4:+7884249 | None:intergenic |
| AGAATCTCGTACAGTGTACG+AGG | 0.693696 | 2_4:+7889562 | None:intergenic |
| CCACTGCCTAAAGTTGCTGG+GGG | 0.698850 | 2_4:-7884310 | Msa0312730:CDS |
| AGTTACCGGACTTCATGACA+TGG | 0.714363 | 2_4:-7886330 | Msa0312730:CDS |
| GAAGGTTGGAAGTCCATCAG+GGG | 0.734678 | 2_4:-7884706 | Msa0312730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATAAATGAAAACTTT+GGG | + | chr2_4:7885269-7885288 | None:intergenic | 10.0% |
| !!! | TTTTATATAAATGAAAACTT+TGG | + | chr2_4:7885270-7885289 | None:intergenic | 10.0% |
| !!! | TAAATTTTTAAAGTATTATC+CGG | + | chr2_4:7885615-7885634 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTGTTGGTTTTT+TGG | - | chr2_4:7884319-7884338 | Msa0312730:CDS | 15.0% |
| !!! | TTTTTTTTTGTTGGTTTTTT+GGG | - | chr2_4:7884320-7884339 | Msa0312730:CDS | 15.0% |
| !! | AATTACATTTAAATGATACT+AGG | + | chr2_4:7884873-7884892 | None:intergenic | 15.0% |
| !!! | CTTAAAGTGAATTATATTTT+AGG | + | chr2_4:7885116-7885135 | None:intergenic | 15.0% |
| !! | CTAAAATATAATTCACTTTA+AGG | - | chr2_4:7885114-7885133 | Msa0312730:intron | 15.0% |
| !! | TTATATAAATGAAAACTTTG+GGG | + | chr2_4:7885268-7885287 | None:intergenic | 15.0% |
| !!! | TACTTTAAAAATTTATATGC+AGG | - | chr2_4:7885620-7885639 | Msa0312730:intron | 15.0% |
| !! | GAAAAAAGAAAAAGAAATTA+AGG | + | chr2_4:7886615-7886634 | None:intergenic | 15.0% |
| !! | AAAAAAAATAGTAACAAACA+AGG | + | chr2_4:7888426-7888445 | None:intergenic | 15.0% |
| !! | TATTAGATTTGAATCTTTAA+CGG | - | chr2_4:7888652-7888671 | Msa0312730:intron | 15.0% |
| !!! | ATTTAATTTGCATCATAAAC+CGG | + | chr2_4:7883912-7883931 | None:intergenic | 20.0% |
| !!! | CTGTTCTTTTTTTTTTTTGT+TGG | - | chr2_4:7884311-7884330 | Msa0312730:CDS | 20.0% |
| !!! | TTTTTTTTGTTGGTTTTTTG+GGG | - | chr2_4:7884321-7884340 | Msa0312730:CDS | 20.0% |
| !!! | GAAGAATTTAACATTTTTGA+AGG | - | chr2_4:7884447-7884466 | Msa0312730:intron | 20.0% |
| !! | ATAATTAAAATCAGCTTTCA+AGG | + | chr2_4:7884486-7884505 | None:intergenic | 20.0% |
| !! | CTATCTCTAATTATATATTC+AGG | + | chr2_4:7884566-7884585 | None:intergenic | 20.0% |
| !! | ATTCTTAAGATAAGTTTAAG+AGG | + | chr2_4:7885011-7885030 | None:intergenic | 20.0% |
| !!! | AATATAATTCACTTTAAGGA+AGG | - | chr2_4:7885118-7885137 | Msa0312730:intron | 20.0% |
| !! | TATATAAATGAAAACTTTGG+GGG | + | chr2_4:7885267-7885286 | None:intergenic | 20.0% |
| !! | TAAAAAAGATAACACCATTA+CGG | - | chr2_4:7885449-7885468 | Msa0312730:intron | 20.0% |
| !!! | AAAAGGATACTATAGTTTTA+AGG | + | chr2_4:7885794-7885813 | None:intergenic | 20.0% |
| !! | CAATAAATTCAAAAGAAAAC+AGG | + | chr2_4:7885959-7885978 | None:intergenic | 20.0% |
| !! | TTAATGTATTAGAATTGACA+TGG | + | chr2_4:7887139-7887158 | None:intergenic | 20.0% |
| !! | TTGGTTGTAGTTTAAAAATT+TGG | - | chr2_4:7887185-7887204 | Msa0312730:intron | 20.0% |
| !!! | TGTAACTATTTATCTCTTTT+AGG | - | chr2_4:7887307-7887326 | Msa0312730:intron | 20.0% |
| !!! | TGATAGTTGATATTTCATTA+TGG | - | chr2_4:7887347-7887366 | Msa0312730:CDS | 20.0% |
| !!! | GGTGTATAGTTTAATTTAAA+CGG | - | chr2_4:7887502-7887521 | Msa0312730:intron | 20.0% |
| !! | AGTTATAAAAGCTAACTAAA+AGG | + | chr2_4:7887819-7887838 | None:intergenic | 20.0% |
| !!! | TCATTTCTGGAAATAAATTA+TGG | - | chr2_4:7887857-7887876 | Msa0312730:intron | 20.0% |
| !!! | GACAAAATAATTGACTTTAA+AGG | - | chr2_4:7888025-7888044 | Msa0312730:intron | 20.0% |
| !! | TGCTAAATAACTCATAATAA+AGG | - | chr2_4:7888242-7888261 | Msa0312730:intron | 20.0% |
| !! | GCTAAATAACTCATAATAAA+GGG | - | chr2_4:7888243-7888262 | Msa0312730:intron | 20.0% |
| !! | CTAAATAACTCATAATAAAG+GGG | - | chr2_4:7888244-7888263 | Msa0312730:intron | 20.0% |
| !!! | GTATATGGAATTATGATTTT+TGG | + | chr2_4:7888302-7888321 | None:intergenic | 20.0% |
| !! | AGTTTCTTTATGAATTGTTA+TGG | - | chr2_4:7888478-7888497 | Msa0312730:intron | 20.0% |
| !!! | TCATGTATACTTAATTTTCA+TGG | - | chr2_4:7889087-7889106 | Msa0312730:intron | 20.0% |
| !!! | GTTGTATGTTTTTGTTTCTT+AGG | - | chr2_4:7884217-7884236 | Msa0312730:CDS | 25.0% |
| ! | TGATTTGATGTTAGCTAAAT+TGG | - | chr2_4:7884345-7884364 | Msa0312730:CDS | 25.0% |
| ! | ATTACTATCTCTGCTAAAAA+TGG | + | chr2_4:7884534-7884553 | None:intergenic | 25.0% |
| ! | TGAAACTATAAGTAATACAG+TGG | + | chr2_4:7884636-7884655 | None:intergenic | 25.0% |
| ! | TGTAATTGACATGAATATCT+TGG | - | chr2_4:7884886-7884905 | Msa0312730:intron | 25.0% |
| ! | TAAGATAAGTTTAAGAGGAA+GGG | + | chr2_4:7885006-7885025 | None:intergenic | 25.0% |
| ! | TTAAGATAAGTTTAAGAGGA+AGG | + | chr2_4:7885007-7885026 | None:intergenic | 25.0% |
| !! | AACAGCAAATGATTTTTGAT+GGG | + | chr2_4:7885425-7885444 | None:intergenic | 25.0% |
| !! | AAACAGCAAATGATTTTTGA+TGG | + | chr2_4:7885426-7885445 | None:intergenic | 25.0% |
| ! | TATTGCCATGTATAAACAAT+AGG | - | chr2_4:7885535-7885554 | Msa0312730:intron | 25.0% |
| ! | ATTGCCATGTATAAACAATA+GGG | - | chr2_4:7885536-7885555 | Msa0312730:intron | 25.0% |
| !! | ACTATAGTATCCTTTTATGT+TGG | - | chr2_4:7885798-7885817 | Msa0312730:intron | 25.0% |
| ! | ATAATTACGACCAACATAAA+AGG | + | chr2_4:7885811-7885830 | None:intergenic | 25.0% |
| ! | AAACAATGTTTAAAAGGATG+AGG | + | chr2_4:7885932-7885951 | None:intergenic | 25.0% |
| ! | GGAAGAAAACAATGTTTAAA+AGG | + | chr2_4:7885938-7885957 | None:intergenic | 25.0% |
| ! | TGCTGTATTATCTTATGTTA+AGG | - | chr2_4:7886015-7886034 | Msa0312730:intron | 25.0% |
| ! | AAATCAATAGCTACAATAAG+AGG | + | chr2_4:7886148-7886167 | None:intergenic | 25.0% |
| ! | AGTGAAATAATGAAAAGACA+TGG | - | chr2_4:7886680-7886699 | Msa0312730:intron | 25.0% |
| ! | ATACATTAACTCTGATATGT+AGG | - | chr2_4:7887150-7887169 | Msa0312730:intron | 25.0% |
| !! | ATTTCATTATGGTTACCTTT+TGG | - | chr2_4:7887358-7887377 | Msa0312730:CDS | 25.0% |
| ! | AACAAGCATATGTCTATTAA+AGG | + | chr2_4:7887425-7887444 | None:intergenic | 25.0% |
| ! | CGCATTTATTAGATTAGATA+AGG | + | chr2_4:7887467-7887486 | None:intergenic | 25.0% |
| ! | TATAAAAGCTAACTAAAAGG+TGG | + | chr2_4:7887816-7887835 | None:intergenic | 25.0% |
| !! | ATTACTTCCATTGTTTTCAA+AGG | + | chr2_4:7887908-7887927 | None:intergenic | 25.0% |
| !!! | CAATTATTTTGTCAACCAAT+TGG | + | chr2_4:7888018-7888037 | None:intergenic | 25.0% |
| !!! | AGTTATATTTTAACTCCTAC+AGG | + | chr2_4:7888103-7888122 | None:intergenic | 25.0% |
| ! | ATTTAGATATGATCATGAGT+AGG | + | chr2_4:7888181-7888200 | None:intergenic | 25.0% |
| ! | ACAAAAAGCAACTTAGTATA+TGG | + | chr2_4:7888317-7888336 | None:intergenic | 25.0% |
| ! | TCCATAGCTTAGTAATTAAT+TGG | - | chr2_4:7888509-7888528 | Msa0312730:intron | 25.0% |
| ! | ACCAATTAATTACTAAGCTA+TGG | + | chr2_4:7888513-7888532 | None:intergenic | 25.0% |
| ! | ATCTAATAATTGCAAGTGTT+TGG | + | chr2_4:7888640-7888659 | None:intergenic | 25.0% |
| ! | TGATTAACAATCTACATGTA+GGG | + | chr2_4:7888992-7889011 | None:intergenic | 25.0% |
| ! | ATGATTAACAATCTACATGT+AGG | + | chr2_4:7888993-7889012 | None:intergenic | 25.0% |
| !!! | TAAAAAAAAGCATCAACTCA+AGG | - | chr2_4:7889329-7889348 | Msa0312730:intron | 25.0% |
| ! | TCTTGCAGTGATAATATTTA+TGG | - | chr2_4:7889436-7889455 | Msa0312730:intron | 25.0% |
| !! | GGAATAATTTGTATTCACTT+GGG | + | chr2_4:7889527-7889546 | None:intergenic | 25.0% |
| !! | AGGAATAATTTGTATTCACT+TGG | + | chr2_4:7889528-7889547 | None:intergenic | 25.0% |
| TAGAACACAAAAACGAATAC+AGG | + | chr2_4:7884045-7884064 | None:intergenic | 30.0% | |
| TGTGATTCTGTGAAATTTGT+TGG | - | chr2_4:7884071-7884090 | Msa0312730:three_prime_UTR | 30.0% | |
| TTTGTTGGATAGTTTGATTC+AGG | - | chr2_4:7884086-7884105 | Msa0312730:three_prime_UTR | 30.0% | |
| ATAGTTTGATTCAGGAGAAA+AGG | - | chr2_4:7884094-7884113 | Msa0312730:three_prime_UTR | 30.0% | |
| AATGTCTCAGAAATAGTGAA+AGG | - | chr2_4:7884591-7884610 | Msa0312730:intron | 30.0% | |
| !!! | TCAATTTCGTTCTTTTTTGC+AGG | - | chr2_4:7884653-7884672 | Msa0312730:intron | 30.0% |
| !!! | CAATTTCGTTCTTTTTTGCA+GGG | - | chr2_4:7884654-7884673 | Msa0312730:intron | 30.0% |
| !!! | AATTTCGTTCTTTTTTGCAG+GGG | - | chr2_4:7884655-7884674 | Msa0312730:intron | 30.0% |
| CAATTACCAAACACAAACTA+TGG | - | chr2_4:7884789-7884808 | Msa0312730:intron | 30.0% | |
| ATCTTGGTTTAGATTTCTTC+TGG | - | chr2_4:7884902-7884921 | Msa0312730:intron | 30.0% | |
| AAGATAAGTTTAAGAGGAAG+GGG | + | chr2_4:7885005-7885024 | None:intergenic | 30.0% | |
| TAACTGATATCACAACACAA+AGG | + | chr2_4:7885050-7885069 | None:intergenic | 30.0% | |
| GGATTTGAATTTAAACCTAG+AGG | - | chr2_4:7885139-7885158 | Msa0312730:intron | 30.0% | |
| ! | AAACAATGATAATGACCTCT+AGG | + | chr2_4:7885157-7885176 | None:intergenic | 30.0% |
| !! | GACTATTTCTAAGAAACAAG+TGG | + | chr2_4:7885370-7885389 | None:intergenic | 30.0% |
| ATGAAAACCAAATCAGACTT+AGG | - | chr2_4:7885472-7885491 | Msa0312730:intron | 30.0% | |
| ATTCATACCTAAGTCTGATT+TGG | + | chr2_4:7885482-7885501 | None:intergenic | 30.0% | |
| TTGCCATGTATAAACAATAG+GGG | - | chr2_4:7885537-7885556 | Msa0312730:intron | 30.0% | |
| AACAAAGCATATAATCTCCA+TGG | + | chr2_4:7885704-7885723 | None:intergenic | 30.0% | |
| ATGTCAATGAATGCATTTAC+AGG | + | chr2_4:7885754-7885773 | None:intergenic | 30.0% | |
| GTAAATGCATTCATTGACAT+AGG | - | chr2_4:7885754-7885773 | Msa0312730:intron | 30.0% | |
| ! | GTGATAATTAACAGAGTGTT+TGG | + | chr2_4:7886056-7886075 | None:intergenic | 30.0% |
| TCTAATTCTAATGACAAGAG+TGG | + | chr2_4:7886324-7886343 | None:intergenic | 30.0% | |
| !! | TGTTTCTGCTCTAAAATTTC+TGG | - | chr2_4:7886471-7886490 | Msa0312730:intron | 30.0% |
| ! | AACAAAAACCTTTTTCCACT+AGG | + | chr2_4:7886538-7886557 | None:intergenic | 30.0% |
| CAAAAGAAAGCAGAAATATG+TGG | + | chr2_4:7886587-7886606 | None:intergenic | 30.0% | |
| ATGAACTGAACAAAAGCAAT+TGG | + | chr2_4:7886637-7886656 | None:intergenic | 30.0% | |
| AATAATGAAAAGACATGGTG+TGG | - | chr2_4:7886685-7886704 | Msa0312730:intron | 30.0% | |
| GTCAAACTATACACATGAAT+TGG | + | chr2_4:7886749-7886768 | None:intergenic | 30.0% | |
| !!! | ATATAGGTCTTGCTTTTTTG+AGG | - | chr2_4:7886847-7886866 | Msa0312730:intron | 30.0% |
| ! | TATGCATTTTCTTTACCATC+AGG | + | chr2_4:7886989-7887008 | None:intergenic | 30.0% |
| TCAAATCATTTGTAGCTGTT+TGG | + | chr2_4:7887047-7887066 | None:intergenic | 30.0% | |
| AGGGATAAATTTATTCTCGT+TGG | + | chr2_4:7887105-7887124 | None:intergenic | 30.0% | |
| !! | ATGTAGGCTTTTTCTCATTT+TGG | - | chr2_4:7887166-7887185 | Msa0312730:intron | 30.0% |
| CTAATTACTTACTTCTTGCA+GGG | - | chr2_4:7887598-7887617 | Msa0312730:intron | 30.0% | |
| TAATTACTTACTTCTTGCAG+GGG | - | chr2_4:7887599-7887618 | Msa0312730:intron | 30.0% | |
| AATTGTTACTCATGTACTGA+AGG | - | chr2_4:7887627-7887646 | Msa0312730:intron | 30.0% | |
| TTCATTGCGAAGATATTTAG+AGG | - | chr2_4:7887661-7887680 | Msa0312730:intron | 30.0% | |
| TCCAATTCCTGAAATCTTAA+TGG | + | chr2_4:7887735-7887754 | None:intergenic | 30.0% | |
| !! | TGCTATTTCAAACAATGTGT+AGG | + | chr2_4:7887760-7887779 | None:intergenic | 30.0% |
| AATAAAGTGACACTCATTTC+TGG | - | chr2_4:7887844-7887863 | Msa0312730:intron | 30.0% | |
| ! | TTCCAAACCTTTGAAAACAA+TGG | - | chr2_4:7887898-7887917 | Msa0312730:CDS | 30.0% |
| ! | TTCCATTGTTTTCAAAGGTT+TGG | + | chr2_4:7887903-7887922 | None:intergenic | 30.0% |
| ! | TCCAGAGTTTTACCAAAATT+CGG | - | chr2_4:7887977-7887996 | Msa0312730:intron | 30.0% |
| !!! | ATTGTTTCTGTTCCGAATTT+TGG | + | chr2_4:7887992-7888011 | None:intergenic | 30.0% |
| GTTGTATTTATCAAGAGAGT+AGG | + | chr2_4:7888061-7888080 | None:intergenic | 30.0% | |
| ACTCATAATAAAGGGGAAAA+TGG | - | chr2_4:7888251-7888270 | Msa0312730:intron | 30.0% | |
| AATAAAGGGGAAAATGGTAA+AGG | - | chr2_4:7888257-7888276 | Msa0312730:intron | 30.0% | |
| AAACAGCTAAATTCAACTAG+TGG | + | chr2_4:7888606-7888625 | None:intergenic | 30.0% | |
| TAATAATTGCAAGTGTTTGG+AGG | + | chr2_4:7888637-7888656 | None:intergenic | 30.0% | |
| ! | TAGTTATGAATCTTTTGACG+AGG | - | chr2_4:7888682-7888701 | Msa0312730:intron | 30.0% |
| TCAATCCAAAAGATCTTCAT+CGG | - | chr2_4:7888814-7888833 | Msa0312730:intron | 30.0% | |
| TAGATGATACAGGTATATGT+CGG | - | chr2_4:7888868-7888887 | Msa0312730:CDS | 30.0% | |
| TGCATTAATTACTCACATCA+AGG | + | chr2_4:7889113-7889132 | None:intergenic | 30.0% | |
| ATGGGATATACACCTTATTA+GGG | + | chr2_4:7889174-7889193 | None:intergenic | 30.0% | |
| AATGGGATATACACCTTATT+AGG | + | chr2_4:7889175-7889194 | None:intergenic | 30.0% | |
| TATCAGAATCATATCCAGTA+AGG | + | chr2_4:7889213-7889232 | None:intergenic | 30.0% | |
| TTACTGGATATGATTCTGAT+AGG | - | chr2_4:7889212-7889231 | Msa0312730:intron | 30.0% | |
| TCGGAAAAGATTACAAGTTT+GGG | + | chr2_4:7889564-7889583 | None:intergenic | 30.0% | |
| ATCGGAAAAGATTACAAGTT+TGG | + | chr2_4:7889565-7889584 | None:intergenic | 30.0% | |
| ! | AAACTTGTAATCTTTTCCGA+TGG | - | chr2_4:7889564-7889583 | Msa0312730:five_prime_UTR | 30.0% |
| CCATTATCAACATTATCCAT+CGG | + | chr2_4:7889583-7889602 | None:intergenic | 30.0% | |
| ! | AGTGCTTTTGTAACGAAACT+GGG | + | chr2_4:7883937-7883956 | None:intergenic | 35.0% |
| ! | AAGTGCTTTTGTAACGAAAC+TGG | + | chr2_4:7883938-7883957 | None:intergenic | 35.0% |
| ATTGAAGAAGCCATGAACTT+AGG | + | chr2_4:7883967-7883986 | None:intergenic | 35.0% | |
| AGTAAGTGAGGAATAAACCA+TGG | - | chr2_4:7884242-7884261 | Msa0312730:CDS | 35.0% | |
| GTAAGTGAGGAATAAACCAT+GGG | - | chr2_4:7884243-7884262 | Msa0312730:CDS | 35.0% | |
| !! | TGTTAGCTAAATTGGTTTGC+AGG | - | chr2_4:7884353-7884372 | Msa0312730:CDS | 35.0% |
| !! | AACCTTCTTCTTTCGCTTTT+CGG | + | chr2_4:7884389-7884408 | None:intergenic | 35.0% |
| ! | TGAGAAGAAGTACAAGAGAA+TGG | + | chr2_4:7884752-7884771 | None:intergenic | 35.0% |
| AAGAAACCGTAATGTCAATG+AGG | - | chr2_4:7884836-7884855 | Msa0312730:intron | 35.0% | |
| AGAAACCGTAATGTCAATGA+GGG | - | chr2_4:7884837-7884856 | Msa0312730:intron | 35.0% | |
| TCTGGTTATCCTTCATTGAT+AGG | - | chr2_4:7884920-7884939 | Msa0312730:intron | 35.0% | |
| CATAGACAACCTATCAATGA+AGG | + | chr2_4:7884932-7884951 | None:intergenic | 35.0% | |
| AGATAAGTTTAAGAGGAAGG+GGG | + | chr2_4:7885004-7885023 | None:intergenic | 35.0% | |
| !! | AACACAAAGGAGTACTATAC+AGG | + | chr2_4:7885037-7885056 | None:intergenic | 35.0% |
| ! | TCTAGTACAACTGGATTTTC+AGG | + | chr2_4:7885345-7885364 | None:intergenic | 35.0% |
| AGTCTAACTATTAACAGACC+TGG | - | chr2_4:7885386-7885405 | Msa0312730:intron | 35.0% | |
| !!! | GATTTGGTTTTCATCCGTAA+TGG | + | chr2_4:7885466-7885485 | None:intergenic | 35.0% |
| TGCCATGTATAAACAATAGG+GGG | - | chr2_4:7885538-7885557 | Msa0312730:intron | 35.0% | |
| GTATTATCCGGATATCAAGA+TGG | + | chr2_4:7885603-7885622 | None:intergenic | 35.0% | |
| TGGAAAACTTACTTTGCATC+AGG | + | chr2_4:7885684-7885703 | None:intergenic | 35.0% | |
| ! | GATGCAAAGTAAGTTTTCCA+TGG | - | chr2_4:7885684-7885703 | Msa0312730:intron | 35.0% |
| ACCTCACATAACACATATCA+GGG | + | chr2_4:7885891-7885910 | None:intergenic | 35.0% | |
| AGGGTGATATAACTAATGCT+CGG | - | chr2_4:7886206-7886225 | Msa0312730:intron | 35.0% | |
| ACATCTGTCAACAGAATTGA+AGG | + | chr2_4:7886262-7886281 | None:intergenic | 35.0% | |
| TCAAATCGTGTTTCGAAATG+GGG | + | chr2_4:7886296-7886315 | None:intergenic | 35.0% | |
| CTCAAATCGTGTTTCGAAAT+GGG | + | chr2_4:7886297-7886316 | None:intergenic | 35.0% | |
| ACTCAAATCGTGTTTCGAAA+TGG | + | chr2_4:7886298-7886317 | None:intergenic | 35.0% | |
| TCTCATGATGAATGAACTTG+AGG | + | chr2_4:7886384-7886403 | None:intergenic | 35.0% | |
| ! | AAAACCTTTTTCCACTAGGT+CGG | + | chr2_4:7886534-7886553 | None:intergenic | 35.0% |
| TTGGCTAGACTTTATAATGC+AGG | + | chr2_4:7886730-7886749 | None:intergenic | 35.0% | |
| ACATCACCAAAGGATCAATT+TGG | + | chr2_4:7886797-7886816 | None:intergenic | 35.0% | |
| !!! | ATCCTTTGGTGATGTTGTTT+TGG | - | chr2_4:7886802-7886821 | Msa0312730:intron | 35.0% |
| AACCAAAACAACATCACCAA+AGG | + | chr2_4:7886807-7886826 | None:intergenic | 35.0% | |
| !!! | GTGATGTTGTTTTGGTTTGT+TGG | - | chr2_4:7886810-7886829 | Msa0312730:intron | 35.0% |
| !!! | TGTTTTGGTTTGTTGGAACT+TGG | - | chr2_4:7886817-7886836 | Msa0312730:intron | 35.0% |
| ! | TGTTTTCTCTTGTTCTGTTC+AGG | - | chr2_4:7886910-7886929 | Msa0312730:intron | 35.0% |
| ! | CAGGTCATTAGACATTTTGA+TGG | - | chr2_4:7886929-7886948 | Msa0312730:intron | 35.0% |
| !! | TAGACATTTTGATGGTTGCA+AGG | - | chr2_4:7886937-7886956 | Msa0312730:intron | 35.0% |
| TGACATGGAGCAACAAAAAA+GGG | + | chr2_4:7887124-7887143 | None:intergenic | 35.0% | |
| TTGACATGGAGCAACAAAAA+AGG | + | chr2_4:7887125-7887144 | None:intergenic | 35.0% | |
| !!! | GCTTCATTTTTTGCAGTTAC+CGG | - | chr2_4:7887207-7887226 | Msa0312730:intron | 35.0% |
| !!! | TATTTTTTGCGATCGCCAAA+AGG | + | chr2_4:7887376-7887395 | None:intergenic | 35.0% |
| GCGATCGCAAAAAATATTGA+AGG | - | chr2_4:7887380-7887399 | Msa0312730:CDS | 35.0% | |
| GCATATGTCTATTAAAGGTG+AGG | + | chr2_4:7887420-7887439 | None:intergenic | 35.0% | |
| TTAAACTATACACCAAGCAC+TGG | + | chr2_4:7887496-7887515 | None:intergenic | 35.0% | |
| ATGAAACTCTACGCAAATCA+AGG | + | chr2_4:7887534-7887553 | None:intergenic | 35.0% | |
| GCTAATTACTTACTTCTTGC+AGG | - | chr2_4:7887597-7887616 | Msa0312730:intron | 35.0% | |
| TGCGAAGATATTTAGAGGAA+AGG | - | chr2_4:7887666-7887685 | Msa0312730:intron | 35.0% | |
| CAAATACCTGACAGTATAGA+AGG | + | chr2_4:7887699-7887718 | None:intergenic | 35.0% | |
| GCCATTAAGATTTCAGGAAT+TGG | - | chr2_4:7887731-7887750 | Msa0312730:intron | 35.0% | |
| TTCAAAGTTAGAAGTCGTAG+TGG | + | chr2_4:7887938-7887957 | None:intergenic | 35.0% | |
| !! | TCCGAATTTTGGTAAAACTC+TGG | + | chr2_4:7887981-7888000 | None:intergenic | 35.0% |
| AACAGAAACAATGAGCCAAT+TGG | - | chr2_4:7888000-7888019 | Msa0312730:intron | 35.0% | |
| ! | ACTTGTAGCATGCTTTTGTT+TGG | - | chr2_4:7888142-7888161 | Msa0312730:intron | 35.0% |
| !! | GCTAAAATTGTTTTTCCCTG+TGG | - | chr2_4:7888342-7888361 | Msa0312730:intron | 35.0% |
| !! | CTGGAATTACGACTACTTTT+TGG | + | chr2_4:7888382-7888401 | None:intergenic | 35.0% |
| ACTAAAGTTCTTACCTATGC+TGG | + | chr2_4:7888401-7888420 | None:intergenic | 35.0% | |
| ! | TTATGAATCTTTTGACGAGG+TGG | - | chr2_4:7888685-7888704 | Msa0312730:intron | 35.0% |
| TTTGACGAGGTGGTTTAAAA+TGG | - | chr2_4:7888695-7888714 | Msa0312730:intron | 35.0% | |
| ! | TCTTTTGGATTGAATCCTTC+TGG | + | chr2_4:7888807-7888826 | None:intergenic | 35.0% |
| GCTGAATTCATTTCCATTCA+GGG | + | chr2_4:7888956-7888975 | None:intergenic | 35.0% | |
| AGCTGAATTCATTTCCATTC+AGG | + | chr2_4:7888957-7888976 | None:intergenic | 35.0% | |
| AGTTTGCAGATTGTGTTAGT+GGG | - | chr2_4:7889137-7889156 | Msa0312730:CDS | 35.0% | |
| !! | TATATCCCATTTCTAGCTTG+CGG | - | chr2_4:7889184-7889203 | Msa0312730:intron | 35.0% |
| CAAATAACACTACGAATCAG+TGG | + | chr2_4:7889402-7889421 | None:intergenic | 35.0% | |
| !! | CACTGATTCGTAGTGTTATT+TGG | - | chr2_4:7889400-7889419 | Msa0312730:intron | 35.0% |
| GTTTGGGTGATGATTATCTA+AGG | + | chr2_4:7889548-7889567 | None:intergenic | 35.0% | |
| ! | CCGATGGATAATGTTGATAA+TGG | - | chr2_4:7889580-7889599 | Msa0312730:five_prime_UTR | 35.0% |
| ! | ACTTTTGCCTCCTAAGTTCA+TGG | - | chr2_4:7883954-7883973 | Msa0312730:three_prime_UTR | 40.0% |
| CAGACATTTACTCAAACACC+TGG | + | chr2_4:7884152-7884171 | None:intergenic | 40.0% | |
| GTTTCTTAGGCAAGTAAGTG+AGG | - | chr2_4:7884230-7884249 | Msa0312730:CDS | 40.0% | |
| CAAAGCTTCAAGGGATAAGA+GGG | - | chr2_4:7884266-7884285 | Msa0312730:CDS | 40.0% | |
| TACCGAAAAGCGAAAGAAGA+AGG | - | chr2_4:7884384-7884403 | Msa0312730:CDS | 40.0% | |
| GAAAAGCGAAAGAAGAAGGT+TGG | - | chr2_4:7884388-7884407 | Msa0312730:CDS | 40.0% | |
| ! | AAAGCGCCATAGTTTGTGTT+TGG | + | chr2_4:7884798-7884817 | None:intergenic | 40.0% |
| GAAACCGTAATGTCAATGAG+GGG | - | chr2_4:7884838-7884857 | Msa0312730:intron | 40.0% | |
| CAATCCCCTCATTGACATTA+CGG | + | chr2_4:7884845-7884864 | None:intergenic | 40.0% | |
| GATAAGTTTAAGAGGAAGGG+GGG | + | chr2_4:7885003-7885022 | None:intergenic | 40.0% | |
| ! | AAATGAAAACTTTGGGGGCT+GGG | + | chr2_4:7885262-7885281 | None:intergenic | 40.0% |
| ! | TAAATGAAAACTTTGGGGGC+TGG | + | chr2_4:7885263-7885282 | None:intergenic | 40.0% |
| TGCCTCACTAATGCAAATGA+AGG | - | chr2_4:7885307-7885326 | Msa0312730:intron | 40.0% | |
| CTCCTTCATTTGCATTAGTG+AGG | + | chr2_4:7885312-7885331 | None:intergenic | 40.0% | |
| CTCACTAATGCAAATGAAGG+AGG | - | chr2_4:7885310-7885329 | Msa0312730:intron | 40.0% | |
| !! | CAAGTGGTTTCTAGTACAAC+TGG | + | chr2_4:7885354-7885373 | None:intergenic | 40.0% |
| GCCATGTATAAACAATAGGG+GGG | - | chr2_4:7885539-7885558 | Msa0312730:intron | 40.0% | |
| TCCCCCCTATTGTTTATACA+TGG | + | chr2_4:7885543-7885562 | None:intergenic | 40.0% | |
| GATGTGAGATCTCAATGTCA+TGG | + | chr2_4:7885732-7885751 | None:intergenic | 40.0% | |
| TCCCTGATATGTGTTATGTG+AGG | - | chr2_4:7885887-7885906 | Msa0312730:CDS | 40.0% | |
| CACCTCACATAACACATATC+AGG | + | chr2_4:7885892-7885911 | None:intergenic | 40.0% | |
| ! | ACAGAGTGTTTGGAATGTGA+AGG | + | chr2_4:7886046-7886065 | None:intergenic | 40.0% |
| TTGCTGCATCATGATATGCA+GGG | - | chr2_4:7886111-7886130 | Msa0312730:intron | 40.0% | |
| !! | AGCTATTGATTTGCAGCCAA+TGG | - | chr2_4:7886156-7886175 | Msa0312730:intron | 40.0% |
| ACCTGGATAACACCTTCAAT+CGG | + | chr2_4:7886184-7886203 | None:intergenic | 40.0% | |
| CAAATCGTGTTTCGAAATGG+GGG | + | chr2_4:7886295-7886314 | None:intergenic | 40.0% | |
| ! | AAACCTTTTTCCACTAGGTC+GGG | + | chr2_4:7886533-7886552 | None:intergenic | 40.0% |
| ATGTGGTTGAAATTCGACAG+AGG | + | chr2_4:7886570-7886589 | None:intergenic | 40.0% | |
| ! | AAGGATCAATTTGGAGCAAC+AGG | + | chr2_4:7886788-7886807 | None:intergenic | 40.0% |
| GTTGCTCCAAATTGATCCTT+TGG | - | chr2_4:7886788-7886807 | Msa0312730:intron | 40.0% | |
| !! | TTGGTTTGTTGGAACTTGGA+AGG | - | chr2_4:7886821-7886840 | Msa0312730:intron | 40.0% |
| GGAACTTGGAAGGATCATAT+AGG | - | chr2_4:7886831-7886850 | Msa0312730:intron | 40.0% | |
| TTACCCTCAACCTCTTTCAT+CGG | - | chr2_4:7887078-7887097 | Msa0312730:intron | 40.0% | |
| TTCATCCATGTCATGAAGTC+CGG | + | chr2_4:7887229-7887248 | None:intergenic | 40.0% | |
| GCTTACTGCAAGTATGAGTT+GGG | + | chr2_4:7887262-7887281 | None:intergenic | 40.0% | |
| TGCTTACTGCAAGTATGAGT+TGG | + | chr2_4:7887263-7887282 | None:intergenic | 40.0% | |
| AGATAAGGTAGTAGACTGAC+TGG | + | chr2_4:7887452-7887471 | None:intergenic | 40.0% | |
| GTTACTCATGTACTGAAGGA+AGG | - | chr2_4:7887631-7887650 | Msa0312730:intron | 40.0% | |
| TCCTGAAATCTTAATGGCGA+GGG | + | chr2_4:7887729-7887748 | None:intergenic | 40.0% | |
| TTCCTGAAATCTTAATGGCG+AGG | + | chr2_4:7887730-7887749 | None:intergenic | 40.0% | |
| !! | GTAGCATGCTTTTGTTTGGT+TGG | - | chr2_4:7888146-7888165 | Msa0312730:intron | 40.0% |
| AGTAGTCGTAATTCCAGCAT+AGG | - | chr2_4:7888385-7888404 | Msa0312730:intron | 40.0% | |
| ! | ACGAGGTGGTTTAAAATGGT+AGG | - | chr2_4:7888699-7888718 | Msa0312730:intron | 40.0% |
| ! | GGTGGTTTAAAATGGTAGGA+AGG | - | chr2_4:7888703-7888722 | Msa0312730:intron | 40.0% |
| ! | GGTTTAAAATGGTAGGAAGG+CGG | - | chr2_4:7888706-7888725 | Msa0312730:intron | 40.0% |
| ! | GTTTAAAATGGTAGGAAGGC+GGG | - | chr2_4:7888707-7888726 | Msa0312730:intron | 40.0% |
| TTGGATTGAATCCTTCTGGA+GGG | + | chr2_4:7888803-7888822 | None:intergenic | 40.0% | |
| TTTGGATTGAATCCTTCTGG+AGG | + | chr2_4:7888804-7888823 | None:intergenic | 40.0% | |
| ! | AGAAGCCGATGAAGATCTTT+TGG | + | chr2_4:7888822-7888841 | None:intergenic | 40.0% |
| TTCAAAGTTGCATCCCTGAA+TGG | - | chr2_4:7888940-7888959 | Msa0312730:intron | 40.0% | |
| GAGTTTGCAGATTGTGTTAG+TGG | - | chr2_4:7889136-7889155 | Msa0312730:CDS | 40.0% | |
| !! | ATATCCCATTTCTAGCTTGC+GGG | - | chr2_4:7889185-7889204 | Msa0312730:intron | 40.0% |
| !! | ACTCTAGAGCTCTCTTGTAA+GGG | + | chr2_4:7889309-7889328 | None:intergenic | 40.0% |
| !! | AACTCTAGAGCTCTCTTGTA+AGG | + | chr2_4:7889310-7889329 | None:intergenic | 40.0% |
| !!! | GGGAGAGATTTTCAAGTTCT+CGG | + | chr2_4:7889358-7889377 | None:intergenic | 40.0% |
| AGAACTTGAAAATCTCTCCC+TGG | - | chr2_4:7889358-7889377 | Msa0312730:intron | 40.0% | |
| TATGCAAGATCAGGAATCCA+GGG | + | chr2_4:7889378-7889397 | None:intergenic | 40.0% | |
| ATATGCAAGATCAGGAATCC+AGG | + | chr2_4:7889379-7889398 | None:intergenic | 40.0% | |
| ATCAGTGGATATGCAAGATC+AGG | + | chr2_4:7889387-7889406 | None:intergenic | 40.0% | |
| AAAGACTCGGAAGAAAGGAA+AGG | + | chr2_4:7889498-7889517 | None:intergenic | 40.0% | |
| CAACAAAAGACTCGGAAGAA+AGG | + | chr2_4:7889503-7889522 | None:intergenic | 40.0% | |
| ACTTGGGACAACAAAAGACT+CGG | + | chr2_4:7889511-7889530 | None:intergenic | 40.0% | |
| GAAGAAGCCATGAACTTAGG+AGG | + | chr2_4:7883964-7883983 | None:intergenic | 45.0% | |
| AGAATCTCGTACAGTGTACG+AGG | + | chr2_4:7883992-7884011 | None:intergenic | 45.0% | |
| CCTGGAGTGCATATCAACAT+AGG | + | chr2_4:7884134-7884153 | None:intergenic | 45.0% | |
| CCTATGTTGATATGCACTCC+AGG | - | chr2_4:7884131-7884150 | Msa0312730:three_prime_UTR | 45.0% | |
| AAACCATGGGCAAAGCTTCA+AGG | - | chr2_4:7884256-7884275 | Msa0312730:CDS | 45.0% | |
| AACCATGGGCAAAGCTTCAA+GGG | - | chr2_4:7884257-7884276 | Msa0312730:CDS | 45.0% | |
| GCAAAGCTTCAAGGGATAAG+AGG | - | chr2_4:7884265-7884284 | Msa0312730:CDS | 45.0% | |
| CTTCAAGGGATAAGAGGGTA+TGG | - | chr2_4:7884271-7884290 | Msa0312730:CDS | 45.0% | |
| ! | GTAGATTTATGTGCTGCTCC+AGG | - | chr2_4:7884689-7884708 | Msa0312730:intron | 45.0% |
| CGTAATGTCAATGAGGGGAT+TGG | - | chr2_4:7884843-7884862 | Msa0312730:intron | 45.0% | |
| GGGGAACTAACATTCTGTAC+TGG | + | chr2_4:7885235-7885254 | None:intergenic | 45.0% | |
| ! | AATGAAAACTTTGGGGGCTG+GGG | + | chr2_4:7885261-7885280 | None:intergenic | 45.0% |
| ATGGGTCGTATACTATGACC+AGG | + | chr2_4:7885407-7885426 | None:intergenic | 45.0% | |
| GTTGCAGCCATCTTGATATC+CGG | - | chr2_4:7885593-7885612 | Msa0312730:intron | 45.0% | |
| CTGCATATCATGATGCAGCA+AGG | + | chr2_4:7886112-7886131 | None:intergenic | 45.0% | |
| CTTGCTGCATCATGATATGC+AGG | - | chr2_4:7886110-7886129 | Msa0312730:intron | 45.0% | |
| !! | TCCGATTGAAGGTGTTATCC+AGG | - | chr2_4:7886180-7886199 | Msa0312730:intron | 45.0% |
| TAGTTATATCACCCTGCACC+TGG | + | chr2_4:7886201-7886220 | None:intergenic | 45.0% | |
| ! | AACCTTTTTCCACTAGGTCG+GGG | + | chr2_4:7886532-7886551 | None:intergenic | 45.0% |
| AGTTACCGGACTTCATGACA+TGG | - | chr2_4:7887221-7887240 | Msa0312730:intron | 45.0% | |
| ACTCATGTACTGAAGGAAGG+AGG | - | chr2_4:7887634-7887653 | Msa0312730:intron | 45.0% | |
| CTCATGTACTGAAGGAAGGA+GGG | - | chr2_4:7887635-7887654 | Msa0312730:intron | 45.0% | |
| CACAAGCCTTCTATACTGTC+AGG | - | chr2_4:7887690-7887709 | Msa0312730:intron | 45.0% | |
| CCTGAAATCTTAATGGCGAG+GGG | + | chr2_4:7887728-7887747 | None:intergenic | 45.0% | |
| GCTTTGCAAAAGTCACCACA+GGG | + | chr2_4:7888360-7888379 | None:intergenic | 45.0% | |
| TTAGTTGTTCACCCTTGCAG+AGG | - | chr2_4:7888752-7888771 | Msa0312730:intron | 45.0% | |
| AACTGCAAATGCCTCTGCAA+GGG | + | chr2_4:7888766-7888785 | None:intergenic | 45.0% | |
| AAACTGCAAATGCCTCTGCA+AGG | + | chr2_4:7888767-7888786 | None:intergenic | 45.0% | |
| GAAAATTACTCCCCTCCAGA+AGG | - | chr2_4:7888789-7888808 | Msa0312730:intron | 45.0% | |
| ! | TGGATTGAATCCTTCTGGAG+GGG | + | chr2_4:7888802-7888821 | None:intergenic | 45.0% |
| !! | TCTTCATCGGCTTCTTGAGA+AGG | - | chr2_4:7888827-7888846 | Msa0312730:intron | 45.0% |
| AGAAGGTTGGAAGTCCATCA+GGG | - | chr2_4:7888844-7888863 | Msa0312730:intron | 45.0% | |
| TTGCAGATTGTGTTAGTGGG+TGG | - | chr2_4:7889140-7889159 | Msa0312730:CDS | 45.0% | |
| ! | AGATTGTGTTAGTGGGTGGT+TGG | - | chr2_4:7889144-7889163 | Msa0312730:CDS | 45.0% |
| !! | TATCCCATTTCTAGCTTGCG+GGG | - | chr2_4:7889186-7889205 | Msa0312730:intron | 45.0% |
| TATCCACTGCCTAAAGTTGC+TGG | - | chr2_4:7889238-7889257 | Msa0312730:intron | 45.0% | |
| ATCCACTGCCTAAAGTTGCT+GGG | - | chr2_4:7889239-7889258 | Msa0312730:intron | 45.0% | |
| TATGTTCCCCCAGCAACTTT+AGG | + | chr2_4:7889250-7889269 | None:intergenic | 45.0% | |
| ! | TCTAGAGCTCTCTTGTAAGG+GGG | + | chr2_4:7889307-7889326 | None:intergenic | 45.0% |
| !! | CTCTAGAGCTCTCTTGTAAG+GGG | + | chr2_4:7889308-7889327 | None:intergenic | 45.0% |
| ATCCCTTGAAGCTTTGCCCA+TGG | + | chr2_4:7884262-7884281 | None:intergenic | 50.0% | |
| ! | ATGAAAACTTTGGGGGCTGG+GGG | + | chr2_4:7885260-7885279 | None:intergenic | 50.0% |
| CTTTGCATCAGGTGCAAGCT+TGG | + | chr2_4:7885673-7885692 | None:intergenic | 50.0% | |
| ACACCTTCAATCGGAGCCAT+TGG | + | chr2_4:7886175-7886194 | None:intergenic | 50.0% | |
| !! | TGAAGGTGTTATCCAGGTGC+AGG | - | chr2_4:7886186-7886205 | Msa0312730:intron | 50.0% |
| !! | GAAGGTGTTATCCAGGTGCA+GGG | - | chr2_4:7886187-7886206 | Msa0312730:intron | 50.0% |
| TAATGCTCGGACTGCTGAAG+TGG | - | chr2_4:7886219-7886238 | Msa0312730:intron | 50.0% | |
| ACCATCGCACACAACAAGGT+CGG | + | chr2_4:7886963-7886982 | None:intergenic | 50.0% | |
| GGTCCGATGAAAGAGGTTGA+GGG | + | chr2_4:7887084-7887103 | None:intergenic | 50.0% | |
| TGGTCCGATGAAAGAGGTTG+AGG | + | chr2_4:7887085-7887104 | None:intergenic | 50.0% | |
| TCTCGTTGGTCCGATGAAAG+AGG | + | chr2_4:7887091-7887110 | None:intergenic | 50.0% | |
| CCCCTCGCCATTAAGATTTC+AGG | - | chr2_4:7887725-7887744 | Msa0312730:intron | 50.0% | |
| ACTCCTACAGGTGCACTTGT+TGG | + | chr2_4:7888091-7888110 | None:intergenic | 50.0% | |
| GGCTTTGCAAAAGTCACCAC+AGG | + | chr2_4:7888361-7888380 | None:intergenic | 50.0% | |
| ! | GCAAGTGTTTGGAGGCACAA+GGG | + | chr2_4:7888629-7888648 | None:intergenic | 50.0% |
| ! | TGCAAGTGTTTGGAGGCACA+AGG | + | chr2_4:7888630-7888649 | None:intergenic | 50.0% |
| !! | CATCGGCTTCTTGAGAAGGT+TGG | - | chr2_4:7888831-7888850 | Msa0312730:intron | 50.0% |
| GAGAAGGTTGGAAGTCCATC+AGG | - | chr2_4:7888843-7888862 | Msa0312730:intron | 50.0% | |
| GAAGGTTGGAAGTCCATCAG+GGG | - | chr2_4:7888845-7888864 | Msa0312730:intron | 50.0% | |
| CCTGTATCATCTACCCCTGA+TGG | + | chr2_4:7888861-7888880 | None:intergenic | 50.0% | |
| CCATCAGGGGTAGATGATAC+AGG | - | chr2_4:7888858-7888877 | Msa0312730:CDS | 50.0% | |
| ! | TGTGTTAGTGGGTGGTTGGA+AGG | - | chr2_4:7889148-7889167 | Msa0312730:CDS | 50.0% |
| GTGGTTGGAAGGCCCTAATA+AGG | - | chr2_4:7889159-7889178 | Msa0312730:CDS | 50.0% | |
| TCCACTGCCTAAAGTTGCTG+GGG | - | chr2_4:7889240-7889259 | Msa0312730:intron | 50.0% | |
| TGGGGGAACATATCAGAGCT+TGG | - | chr2_4:7889258-7889277 | Msa0312730:intron | 50.0% | |
| TAGAGCTCTCTTGTAAGGGG+GGG | + | chr2_4:7889305-7889324 | None:intergenic | 50.0% | |
| CTAGAGCTCTCTTGTAAGGG+GGG | + | chr2_4:7889306-7889325 | None:intergenic | 50.0% | |
| CAGCCAATGGCTCCGATTGA+AGG | - | chr2_4:7886169-7886188 | Msa0312730:intron | 55.0% | |
| ATGTATCCACCCCGACCTAG+TGG | - | chr2_4:7886520-7886539 | Msa0312730:intron | 55.0% | |
| ! | CTTTTTCCACTAGGTCGGGG+TGG | + | chr2_4:7886529-7886548 | None:intergenic | 55.0% |
| CACCCCGACCTAGTGGAAAA+AGG | - | chr2_4:7886527-7886546 | Msa0312730:intron | 55.0% | |
| GAGCACCATCGCACACAACA+AGG | + | chr2_4:7886967-7886986 | None:intergenic | 55.0% | |
| AATGCGCACACACCAGTGCT+TGG | - | chr2_4:7887481-7887500 | Msa0312730:intron | 55.0% | |
| GCACCAACAAGTGCACCTGT+AGG | - | chr2_4:7888085-7888104 | Msa0312730:intron | 55.0% | |
| GGTCCCCGCAAGCTAGAAAT+GGG | + | chr2_4:7889192-7889211 | None:intergenic | 55.0% | |
| AGGTCCCCGCAAGCTAGAAA+TGG | + | chr2_4:7889193-7889212 | None:intergenic | 55.0% | |
| CCACTGCCTAAAGTTGCTGG+GGG | - | chr2_4:7889241-7889260 | Msa0312730:intron | 55.0% | |
| GGGGCAATAGGAGGTTGTAC+TGG | + | chr2_4:7889286-7889305 | None:intergenic | 55.0% | |
| TTGTAAGGGGGGGCAATAGG+AGG | + | chr2_4:7889295-7889314 | None:intergenic | 55.0% | |
| CTCTTGTAAGGGGGGGCAAT+AGG | + | chr2_4:7889298-7889317 | None:intergenic | 55.0% | |
| ! | TATGTGCTGCTCCAGGCAGC+TGG | - | chr2_4:7884696-7884715 | Msa0312730:CDS | 60.0% |
| AGTACCTGACTCCAGCTGCC+TGG | + | chr2_4:7884710-7884729 | None:intergenic | 60.0% | |
| AGGCAGCTGGAGTCAGGTAC+TGG | - | chr2_4:7884709-7884728 | Msa0312730:CDS | 60.0% | |
| ! | AACTTTGGGGGCTGGGGGTA+GGG | + | chr2_4:7885255-7885274 | None:intergenic | 60.0% |
| ! | AAACTTTGGGGGCTGGGGGT+AGG | + | chr2_4:7885256-7885275 | None:intergenic | 60.0% |
| CAGGTGCAAGCTTGGCTGGA+AGG | + | chr2_4:7885665-7885684 | None:intergenic | 60.0% | |
| GCATCAGGTGCAAGCTTGGC+TGG | + | chr2_4:7885669-7885688 | None:intergenic | 60.0% | |
| ! | GCCGACCTTGTTGTGTGCGA+TGG | - | chr2_4:7886959-7886978 | Msa0312730:intron | 60.0% |
| GTGTGCGATGGTGCTCCTGA+TGG | - | chr2_4:7886971-7886990 | Msa0312730:intron | 60.0% | |
| ! | CTAGCTTGCGGGGACCTTAC+TGG | - | chr2_4:7889196-7889215 | Msa0312730:intron | 60.0% |
| CCCCCAGCAACTTTAGGCAG+TGG | + | chr2_4:7889244-7889263 | None:intergenic | 60.0% | |
| TGCTCCAGGCAGCTGGAGTC+AGG | - | chr2_4:7884703-7884722 | Msa0312730:CDS | 65.0% | |
| ! | ACTTTGGGGGCTGGGGGTAG+GGG | + | chr2_4:7885254-7885273 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 7883909 | 7889664 | 7883909 | ID=Msa0312730;Name=Msa0312730 |
| chr2_4 | mRNA | 7883909 | 7889664 | 7883909 | ID=Msa0312730-mRNA-1;Parent=Msa0312730;Name=Msa0312730-mRNA-1;_AED=0.07;_eAED=0.07;_QI=229|1|1|1|0.90|0.83|12|298|309 |
| chr2_4 | exon | 7883909 | 7884427 | 7883909 | ID=Msa0312730-mRNA-1:exon:3045;Parent=Msa0312730-mRNA-1 |
| chr2_4 | exon | 7884694 | 7884801 | 7884694 | ID=Msa0312730-mRNA-1:exon:3044;Parent=Msa0312730-mRNA-1 |
| chr2_4 | exon | 7885167 | 7885230 | 7885167 | ID=Msa0312730-mRNA-1:exon:3043;Parent=Msa0312730-mRNA-1 |
| chr2_4 | exon | 7885862 | 7885954 | 7885862 | ID=Msa0312730-mRNA-1:exon:3042;Parent=Msa0312730-mRNA-1 |
| chr2_4 | exon | 7886298 | 7886350 | 7886298 | ID=Msa0312730-mRNA-1:exon:3041;Parent=Msa0312730-mRNA-1 |
| chr2_4 | exon | 7886581 | 7886641 | 7886581 | ID=Msa0312730-mRNA-1:exon:3040;Parent=Msa0312730-mRNA-1 |
| chr2_4 | exon | 7887333 | 7887441 | 7887333 | ID=Msa0312730-mRNA-1:exon:3039;Parent=Msa0312730-mRNA-1 |
| chr2_4 | exon | 7887882 | 7887931 | 7887882 | ID=Msa0312730-mRNA-1:exon:3038;Parent=Msa0312730-mRNA-1 |
| chr2_4 | exon | 7888849 | 7888898 | 7888849 | ID=Msa0312730-mRNA-1:exon:3037;Parent=Msa0312730-mRNA-1 |
| chr2_4 | exon | 7889105 | 7889198 | 7889105 | ID=Msa0312730-mRNA-1:exon:3036;Parent=Msa0312730-mRNA-1 |
| chr2_4 | exon | 7889286 | 7889334 | 7889286 | ID=Msa0312730-mRNA-1:exon:3035;Parent=Msa0312730-mRNA-1 |
| chr2_4 | exon | 7889458 | 7889664 | 7889458 | ID=Msa0312730-mRNA-1:exon:3034;Parent=Msa0312730-mRNA-1 |
| chr2_4 | five_prime_UTR | 7889458 | 7889664 | 7889458 | ID=Msa0312730-mRNA-1:five_prime_utr;Parent=Msa0312730-mRNA-1 |
| chr2_4 | five_prime_UTR | 7889313 | 7889334 | 7889313 | ID=Msa0312730-mRNA-1:five_prime_utr;Parent=Msa0312730-mRNA-1 |
| chr2_4 | CDS | 7889286 | 7889312 | 7889286 | ID=Msa0312730-mRNA-1:cds;Parent=Msa0312730-mRNA-1 |
| chr2_4 | CDS | 7889105 | 7889198 | 7889105 | ID=Msa0312730-mRNA-1:cds;Parent=Msa0312730-mRNA-1 |
| chr2_4 | CDS | 7888849 | 7888898 | 7888849 | ID=Msa0312730-mRNA-1:cds;Parent=Msa0312730-mRNA-1 |
| chr2_4 | CDS | 7887882 | 7887931 | 7887882 | ID=Msa0312730-mRNA-1:cds;Parent=Msa0312730-mRNA-1 |
| chr2_4 | CDS | 7887333 | 7887441 | 7887333 | ID=Msa0312730-mRNA-1:cds;Parent=Msa0312730-mRNA-1 |
| chr2_4 | CDS | 7886581 | 7886641 | 7886581 | ID=Msa0312730-mRNA-1:cds;Parent=Msa0312730-mRNA-1 |
| chr2_4 | CDS | 7886298 | 7886350 | 7886298 | ID=Msa0312730-mRNA-1:cds;Parent=Msa0312730-mRNA-1 |
| chr2_4 | CDS | 7885862 | 7885954 | 7885862 | ID=Msa0312730-mRNA-1:cds;Parent=Msa0312730-mRNA-1 |
| chr2_4 | CDS | 7885167 | 7885230 | 7885167 | ID=Msa0312730-mRNA-1:cds;Parent=Msa0312730-mRNA-1 |
| chr2_4 | CDS | 7884694 | 7884801 | 7884694 | ID=Msa0312730-mRNA-1:cds;Parent=Msa0312730-mRNA-1 |
| chr2_4 | CDS | 7884207 | 7884427 | 7884207 | ID=Msa0312730-mRNA-1:cds;Parent=Msa0312730-mRNA-1 |
| chr2_4 | three_prime_UTR | 7883909 | 7884206 | 7883909 | ID=Msa0312730-mRNA-1:three_prime_utr;Parent=Msa0312730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
