AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0981780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0981780 MtrunA17_Chr2g0282131 97.951 244 5 0 3 246 73 316 3.27e-178 492
Msa0981780 MtrunA17_Chr4g0035141 33.758 157 97 5 10 160 71 226 9.64e-20 88.2
Msa0981780 MtrunA17_Chr4g0040381 31.847 157 100 5 10 160 71 226 1.78e-18 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0981780 AT5G01230.1 92.308 234 17 1 4 236 74 307 2.63e-160 446
Msa0981780 AT4G25730.1 32.335 167 99 7 6 161 62 225 1.19e-17 82.4

Find 90 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGCAGTGATAATATTTA+TGG 0.099808 6_4:+21347753 Msa0981780:three_prime_UTR
CACTGATTCGTAGTGTTATT+TGG 0.132341 6_4:+21347717 Msa0981780:three_prime_UTR
AATGGGATATACACCTTATT+AGG 0.161234 6_4:-21347490 None:intergenic
ATCGGAAAAGTTTATAAGTT+TGG 0.192523 6_4:-21347879 None:intergenic
AGGAATAATTTGTATTCATT+TGG 0.244032 6_4:-21347842 None:intergenic
AGAAGCCGATGAAGATCTTT+TGG 0.261957 6_4:-21347135 None:intergenic
CTAGCTTGCGGGGACCTTAC+TGG 0.280561 6_4:+21347514 Msa0981780:CDS
TCGGAAAAGTTTATAAGTTT+GGG 0.305571 6_4:-21347878 None:intergenic
GTTTGGGTTATGATTATCTA+AGG 0.309017 6_4:-21347862 None:intergenic
TTCATTGCGAAGATATTTAG+AGG 0.318467 6_4:+21345983 Msa0981780:CDS
ATATCCCATTTCTAGCTTGC+GGG 0.337528 6_4:+21347503 Msa0981780:CDS
GGAATAATTTGTATTCATTT+GGG 0.341056 6_4:-21347841 None:intergenic
AACTCTAGAGCTCTCTTGTA+AGG 0.363418 6_4:-21347625 None:intergenic
TATCCACTGCCTAAAGTTGC+TGG 0.400318 6_4:+21347556 Msa0981780:CDS
CAAATACCTGACAGTATAGA+AGG 0.404894 6_4:-21346018 None:intergenic
AGGTCCCCGCAAGCTAGAAA+TGG 0.414251 6_4:-21347508 None:intergenic
GAGAAGGTTGGAAGTCCATC+AGG 0.420443 6_4:+21347159 Msa0981780:CDS
ACTAAAGTTCTTACCTATGC+TGG 0.426966 6_4:-21346720 None:intergenic
CAGCCAATGGCTCCGATTGA+AGG 0.431915 6_4:+21344491 Msa0981780:CDS
ATGGGATATACACCTTATTA+GGG 0.432233 6_4:-21347489 None:intergenic
AAATCAATAGCTACAATAAG+AGG 0.445424 6_4:-21344467 None:intergenic
TGCTTACTGCAAGTATGAGT+TGG 0.458021 6_4:-21345582 None:intergenic
GAGTTTGCAGATTGTGTTAG+TGG 0.463559 6_4:+21347454 Msa0981780:intron
CATCGGCTTCTTGAGAAGGT+TGG 0.470461 6_4:+21347147 Msa0981780:CDS
CAACAAAAGACTCGGAAGAA+AGG 0.471356 6_4:-21347817 None:intergenic
TTCATCCATGTCATGAAGTC+CGG 0.472049 6_4:-21345548 None:intergenic
ATCAGTGGATATGCAAGATC+AGG 0.472705 6_4:-21347701 None:intergenic
TTACTGGATATGATTCTGAT+AGG 0.474435 6_4:+21347530 Msa0981780:CDS
GCTTACTGCAAGTATGAGTT+GGG 0.475427 6_4:-21345581 None:intergenic
TGAAGGTGTTATCCAGGTGC+AGG 0.479392 6_4:+21344508 Msa0981780:CDS
GGCTTTGCAAAAGTCACCAC+AGG 0.483167 6_4:-21346680 None:intergenic
CTTGCTGCATCATGATATGC+AGG 0.484698 6_4:+21344432 None:intergenic
ATCCACTGCCTAAAGTTGCT+GGG 0.488195 6_4:+21347557 Msa0981780:CDS
CCATCAGGGGTAGATGATAC+AGG 0.496409 6_4:+21347174 Msa0981780:CDS
AGCTATTGATTTGCAGCCAA+TGG 0.497084 6_4:+21344478 Msa0981780:CDS
TATATCCCATTTCTAGCTTG+CGG 0.497714 6_4:+21347502 Msa0981780:CDS
TCTTCATCGGCTTCTTGAGA+AGG 0.501095 6_4:+21347143 Msa0981780:CDS
ACACCTTCAATCGGAGCCAT+TGG 0.510050 6_4:-21344494 None:intergenic
TTGGATTGAATCCTTCTGGA+GGG 0.511479 6_4:-21347116 None:intergenic
GGGGCAATAGGAGGTTGTAC+TGG 0.511552 6_4:-21347601 None:intergenic
GTGGTTGGAAGGCCCTAATA+AGG 0.511729 6_4:+21347477 Msa0981780:CDS
GGTCCCCGCAAGCTAGAAAT+GGG 0.513086 6_4:-21347507 None:intergenic
TCCGATTGAAGGTGTTATCC+AGG 0.517786 6_4:+21344502 Msa0981780:CDS
TAGTTATATCACCCTGCACC+TGG 0.518978 6_4:-21344520 None:intergenic
CACAAGCCTTCTATACTGTC+AGG 0.519250 6_4:+21346012 Msa0981780:CDS
TATCAGAATCATATCCAGTA+AGG 0.519570 6_4:-21347528 None:intergenic
ATATGCAAGATCAGGAATCC+AGG 0.523232 6_4:-21347693 None:intergenic
ACTCTAGAGCTCTCTTGTAA+GGG 0.527637 6_4:-21347624 None:intergenic
TGCGAAGATATTTAGAGGAA+AGG 0.528045 6_4:+21345988 Msa0981780:CDS
TCAATCCAAAAGATCTTCAT+CGG 0.528148 6_4:+21347130 Msa0981780:CDS
TGTGTTAGTGGGTGGTTGGA+AGG 0.530748 6_4:+21347466 Msa0981780:CDS
ACCTGGATAACACCTTCAAT+CGG 0.534040 6_4:-21344503 None:intergenic
TGGATTGAATCCTTCTGGAG+GGG 0.538206 6_4:-21347115 None:intergenic
GCCGACCTTGTTGTGTGCGA+TGG 0.542550 6_4:+21345281 Msa0981780:CDS
AGTTTGCAGATTGTGTTAGT+GGG 0.550426 6_4:+21347455 Msa0981780:intron
CCTGTATCATCTACCCCTGA+TGG 0.551247 6_4:-21347174 None:intergenic
AGATTGTGTTAGTGGGTGGT+TGG 0.553179 6_4:+21347462 Msa0981780:intron
AGTAGTCGTAATTCCAGCAT+AGG 0.557095 6_4:+21346707 Msa0981780:CDS
TCCACTGCCTAAAGTTGCTG+GGG 0.574703 6_4:+21347558 Msa0981780:CDS
GAAAATTACTCCCCTCCAGA+AGG 0.574957 6_4:+21347105 Msa0981780:CDS
TTGCAGATTGTGTTAGTGGG+TGG 0.575776 6_4:+21347458 Msa0981780:intron
CTCTAGAGCTCTCTTGTAAG+GGG 0.577035 6_4:-21347623 None:intergenic
CTCATGTACTGAAGGAAGGA+GGG 0.582274 6_4:+21345957 Msa0981780:CDS
AGAACTTGAAAATCTCTCCC+TGG 0.583460 6_4:+21347675 Msa0981780:CDS
GTGTGCGATGGTGCTCCTGA+TGG 0.586485 6_4:+21345293 Msa0981780:CDS
TATCCCATTTCTAGCTTGCG+GGG 0.586932 6_4:+21347504 Msa0981780:CDS
TAATGCTCGGACTGCTGAAG+TGG 0.587470 6_4:+21344541 Msa0981780:CDS
AATTGTTACTCATGTACTGA+AGG 0.593299 6_4:+21345949 Msa0981780:CDS
GTTACTCATGTACTGAAGGA+AGG 0.596222 6_4:+21345953 Msa0981780:CDS
TTTGGATTGAATCCTTCTGG+AGG 0.598385 6_4:-21347117 None:intergenic
CTAGAGCTCTCTTGTAAGGG+GGG 0.605069 6_4:-21347621 None:intergenic
ATTTGGGACAACAAAAGACT+CGG 0.605473 6_4:-21347825 None:intergenic
AGAAGGTTGGAAGTCCATCA+GGG 0.611108 6_4:+21347160 Msa0981780:CDS
CAAATAACACTACGAATCAG+TGG 0.612508 6_4:-21347716 None:intergenic
ACTCATGTACTGAAGGAAGG+AGG 0.615741 6_4:+21345956 Msa0981780:CDS
ACATTATCAACATTATCCAT+CGG 0.623898 6_4:-21347897 None:intergenic
ACCATCGCACACAACAAGGT+CGG 0.624891 6_4:-21345282 None:intergenic
TATGCAAGATCAGGAATCCA+GGG 0.628400 6_4:-21347692 None:intergenic
GAGCACCATCGCACACAACA+AGG 0.633636 6_4:-21345286 None:intergenic
TCTAGAGCTCTCTTGTAAGG+GGG 0.635566 6_4:-21347622 None:intergenic
ATAATATGAGTAAAATTGTG+AGG 0.639750 6_4:+21347962 Msa0981780:three_prime_UTR
GAAGGTGTTATCCAGGTGCA+GGG 0.645167 6_4:+21344509 Msa0981780:CDS
AGGGTGATATAACTAATGCT+CGG 0.647655 6_4:+21344528 Msa0981780:CDS
AAAGACTCGGAAGAAAGGAA+AGG 0.655032 6_4:-21347812 None:intergenic
GCTTTGCAAAAGTCACCACA+GGG 0.664958 6_4:-21346679 None:intergenic
TAGAGCTCTCTTGTAAGGGG+GGG 0.669752 6_4:-21347620 None:intergenic
TTGCTGCATCATGATATGCA+GGG 0.684050 6_4:+21344433 None:intergenic
CCACTGCCTAAAGTTGCTGG+GGG 0.698850 6_4:+21347559 Msa0981780:CDS
AGTTACCGGACTTCATGACA+TGG 0.714363 6_4:+21345543 Msa0981780:intron
GAAGGTTGGAAGTCCATCAG+GGG 0.734678 6_4:+21347161 Msa0981780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAAAGAAAAAGAAATTA+AGG - chr6_4:21344937-21344956 None:intergenic 15.0%
!! AAAAAAAATAGTAACAAACA+AGG - chr6_4:21346748-21346767 None:intergenic 15.0%
!! TATTAGATTTGAATCTTTAA+CGG + chr6_4:21346968-21346987 Msa0981780:intron 15.0%
!! TTAATGTATTAGAATTGACA+TGG - chr6_4:21345461-21345480 None:intergenic 20.0%
!! TTGGTTGTAGTTTAAAAATT+TGG + chr6_4:21345507-21345526 Msa0981780:intron 20.0%
!!! TGTAACTATTTATCTCTTTT+AGG + chr6_4:21345629-21345648 Msa0981780:intron 20.0%
!!! TGATAGTTGATATTTCATTA+TGG + chr6_4:21345669-21345688 Msa0981780:intron 20.0%
!!! GGTGTATAGTTTAATTTAAA+CGG + chr6_4:21345824-21345843 Msa0981780:intron 20.0%
!! AGTTATAAAAGCTAACTAAA+AGG - chr6_4:21346141-21346160 None:intergenic 20.0%
!!! TCATTTCTGGAAATAAATTA+TGG + chr6_4:21346179-21346198 Msa0981780:intron 20.0%
!!! GACAAAATAATTGACTTTAA+AGG + chr6_4:21346347-21346366 Msa0981780:intron 20.0%
!! TGCTAAATAACTCATAATAA+AGG + chr6_4:21346564-21346583 Msa0981780:intron 20.0%
!! GCTAAATAACTCATAATAAA+GGG + chr6_4:21346565-21346584 Msa0981780:intron 20.0%
!! CTAAATAACTCATAATAAAG+GGG + chr6_4:21346566-21346585 Msa0981780:intron 20.0%
!!! GTATATGGAATTATGATTTT+TGG - chr6_4:21346624-21346643 None:intergenic 20.0%
!! AGTTTCTTTATGAATTGTTA+TGG + chr6_4:21346798-21346817 Msa0981780:intron 20.0%
!!! TCATGTATACTTAATTTTCA+TGG + chr6_4:21347404-21347423 Msa0981780:intron 20.0%
!!! GGAATAATTTGTATTCATTT+GGG - chr6_4:21347844-21347863 None:intergenic 20.0%
!!! AGGAATAATTTGTATTCATT+TGG - chr6_4:21347845-21347864 None:intergenic 20.0%
! AAATCAATAGCTACAATAAG+AGG - chr6_4:21344470-21344489 None:intergenic 25.0%
!!! TGTTTCTGCTCTAAAATTTA+TGG + chr6_4:21344793-21344812 Msa0981780:intron 25.0%
! AGTGAAATAATGAAAAGACA+TGG + chr6_4:21345002-21345021 Msa0981780:intron 25.0%
! ATACATTAACTCTGATATGT+AGG + chr6_4:21345472-21345491 Msa0981780:intron 25.0%
!! ATTTCATTATGGTTACCTTT+TGG + chr6_4:21345680-21345699 Msa0981780:intron 25.0%
! AACAAGCATATGTCTATTAA+AGG - chr6_4:21345747-21345766 None:intergenic 25.0%
! CGCATTTATTAGATTAGATA+AGG - chr6_4:21345789-21345808 None:intergenic 25.0%
! TATAAAAGCTAACTAAAAGG+TGG - chr6_4:21346138-21346157 None:intergenic 25.0%
!! ATTACTTCCATTGTTTTCAA+AGG - chr6_4:21346230-21346249 None:intergenic 25.0%
!!! CAATTATTTTGTCAACCAAT+TGG - chr6_4:21346340-21346359 None:intergenic 25.0%
! TTTGTATTTATCAAGAGAGT+AGG - chr6_4:21346383-21346402 None:intergenic 25.0%
!!! AGTTATATTTTAACTCCTAC+AGG - chr6_4:21346425-21346444 None:intergenic 25.0%
! ATTTAGATATGATCATGAGT+AGG - chr6_4:21346503-21346522 None:intergenic 25.0%
! ACAAAAAGCAACTTAGTATA+TGG - chr6_4:21346639-21346658 None:intergenic 25.0%
!! ATTTTCCATAGCTTAGTAAT+TGG + chr6_4:21346825-21346844 Msa0981780:intron 25.0%
! ATCTAATAATTGCAAGTGTT+TGG - chr6_4:21346956-21346975 None:intergenic 25.0%
! TGCTCTTAAGAATTTCTATA+AGG - chr6_4:21347211-21347230 None:intergenic 25.0%
! TGATTAACAATCTACATGTA+GGG - chr6_4:21347308-21347327 None:intergenic 25.0%
! ATGATTAACAATCTACATGT+AGG - chr6_4:21347309-21347328 None:intergenic 25.0%
!!! TTAAAAAAAGCATCAACTCA+AGG + chr6_4:21347646-21347665 Msa0981780:CDS 25.0%
! TCTTGCAGTGATAATATTTA+TGG + chr6_4:21347753-21347772 Msa0981780:three_prime_UTR 25.0%
! TCGGAAAAGTTTATAAGTTT+GGG - chr6_4:21347881-21347900 None:intergenic 25.0%
! ATCGGAAAAGTTTATAAGTT+TGG - chr6_4:21347882-21347901 None:intergenic 25.0%
!! AAACTTATAAACTTTTCCGA+TGG + chr6_4:21347881-21347900 Msa0981780:three_prime_UTR 25.0%
! ACATTATCAACATTATCCAT+CGG - chr6_4:21347900-21347919 None:intergenic 25.0%
TCTAATTCTAATGACTAGAG+TGG - chr6_4:21344646-21344665 None:intergenic 30.0%
! AACAAAAACCTTTTTCCACT+AGG - chr6_4:21344860-21344879 None:intergenic 30.0%
CAAAAGAAAGCAGAAATATG+TGG - chr6_4:21344909-21344928 None:intergenic 30.0%
ATGAACTGAACAAAAGCAAT+TGG - chr6_4:21344959-21344978 None:intergenic 30.0%
AATAATGAAAAGACATGGTG+TGG + chr6_4:21345007-21345026 Msa0981780:intron 30.0%
GTCAAACTATACACATGAAT+TGG - chr6_4:21345071-21345090 None:intergenic 30.0%
!!! ATATAGGTCTTGCTTTTTTG+AGG + chr6_4:21345169-21345188 Msa0981780:intron 30.0%
! TATGCATTTTCTTTACCATC+AGG - chr6_4:21345311-21345330 None:intergenic 30.0%
TCAAATCATTTGTAGCTGTT+TGG - chr6_4:21345369-21345388 None:intergenic 30.0%
AGGGATAAATTTATTCTCCT+TGG - chr6_4:21345427-21345446 None:intergenic 30.0%
!! ATGTAGGCTTTTTCTCATTT+TGG + chr6_4:21345488-21345507 Msa0981780:intron 30.0%
CTAATTACTTACTTCTTGCA+GGG + chr6_4:21345920-21345939 Msa0981780:intron 30.0%
TAATTACTTACTTCTTGCAG+GGG + chr6_4:21345921-21345940 Msa0981780:intron 30.0%
AATTGTTACTCATGTACTGA+AGG + chr6_4:21345949-21345968 Msa0981780:CDS 30.0%
TTCATTGCGAAGATATTTAG+AGG + chr6_4:21345983-21346002 Msa0981780:CDS 30.0%
TCCAATTCCTGAAATCTTAA+TGG - chr6_4:21346057-21346076 None:intergenic 30.0%
!! TGCTATTTCAAACAATGTGT+AGG - chr6_4:21346082-21346101 None:intergenic 30.0%
AATAAAGTGACACTCATTTC+TGG + chr6_4:21346166-21346185 Msa0981780:intron 30.0%
! TTCCAAACCTTTGAAAACAA+TGG + chr6_4:21346220-21346239 Msa0981780:intron 30.0%
! TTCCATTGTTTTCAAAGGTT+TGG - chr6_4:21346225-21346244 None:intergenic 30.0%
! TCCAGAGTTTTACCAAAATT+CGG + chr6_4:21346299-21346318 Msa0981780:intron 30.0%
!!! ATTGTTTCTGTTCCGAATTT+TGG - chr6_4:21346314-21346333 None:intergenic 30.0%
ACTCATAATAAAGGGGAAAA+TGG + chr6_4:21346573-21346592 Msa0981780:intron 30.0%
AATAAAGGGGAAAATGGTAA+AGG + chr6_4:21346579-21346598 Msa0981780:intron 30.0%
AACTACCAATTACTAAGCTA+TGG - chr6_4:21346833-21346852 None:intergenic 30.0%
AAACAGCTAAATTCAACTAG+TGG - chr6_4:21346922-21346941 None:intergenic 30.0%
TAATAATTGCAAGTGTTTGG+AGG - chr6_4:21346953-21346972 None:intergenic 30.0%
! TAGTTATGAATCTTTTGACG+AGG + chr6_4:21346998-21347017 Msa0981780:intron 30.0%
TCAATCCAAAAGATCTTCAT+CGG + chr6_4:21347130-21347149 Msa0981780:CDS 30.0%
TAGATGATACAGGTATATGT+CGG + chr6_4:21347184-21347203 Msa0981780:intron 30.0%
ATGGGATATACACCTTATTA+GGG - chr6_4:21347492-21347511 None:intergenic 30.0%
AATGGGATATACACCTTATT+AGG - chr6_4:21347493-21347512 None:intergenic 30.0%
TATCAGAATCATATCCAGTA+AGG - chr6_4:21347531-21347550 None:intergenic 30.0%
TTACTGGATATGATTCTGAT+AGG + chr6_4:21347530-21347549 Msa0981780:CDS 30.0%
! GTTTGGGTTATGATTATCTA+AGG - chr6_4:21347865-21347884 None:intergenic 30.0%
AGGGTGATATAACTAATGCT+CGG + chr6_4:21344528-21344547 Msa0981780:CDS 35.0%
ACATCTGTCAACAGAATTGA+AGG - chr6_4:21344584-21344603 None:intergenic 35.0%
TCAAATCGTGTTTCGAAATG+GGG - chr6_4:21344618-21344637 None:intergenic 35.0%
CTCAAATCGTGTTTCGAAAT+GGG - chr6_4:21344619-21344638 None:intergenic 35.0%
ACTCAAATCGTGTTTCGAAA+TGG - chr6_4:21344620-21344639 None:intergenic 35.0%
TCTCATGATGAATGAACTTG+AGG - chr6_4:21344706-21344725 None:intergenic 35.0%
! AAAACCTTTTTCCACTAGGT+CGG - chr6_4:21344856-21344875 None:intergenic 35.0%
TTGGCTAGACTTTATAATGC+AGG - chr6_4:21345052-21345071 None:intergenic 35.0%
ACATCACCAAAGGATCAATT+TGG - chr6_4:21345119-21345138 None:intergenic 35.0%
! TGTTTTCTCTTGTTCTGTTC+AGG + chr6_4:21345232-21345251 Msa0981780:intron 35.0%
! CAGGTCATTAGACATTTTGA+TGG + chr6_4:21345251-21345270 Msa0981780:intron 35.0%
!! TAGACATTTTGATGGTTGCA+AGG + chr6_4:21345259-21345278 Msa0981780:CDS 35.0%
TGACATGGAGCAACAAAAAA+GGG - chr6_4:21345446-21345465 None:intergenic 35.0%
TTGACATGGAGCAACAAAAA+AGG - chr6_4:21345447-21345466 None:intergenic 35.0%
!!! GCTTCATTTTTTGCAGTTAC+CGG + chr6_4:21345529-21345548 Msa0981780:intron 35.0%
!!! TATTTTTTGCGATCGCCAAA+AGG - chr6_4:21345698-21345717 None:intergenic 35.0%
GCGATCGCAAAAAATATTGA+AGG + chr6_4:21345702-21345721 Msa0981780:intron 35.0%
GCATATGTCTATTAAAGGTG+AGG - chr6_4:21345742-21345761 None:intergenic 35.0%
ATGAAACTCTACGCAAATCA+AGG - chr6_4:21345856-21345875 None:intergenic 35.0%
GCTAATTACTTACTTCTTGC+AGG + chr6_4:21345919-21345938 Msa0981780:intron 35.0%
TGCGAAGATATTTAGAGGAA+AGG + chr6_4:21345988-21346007 Msa0981780:CDS 35.0%
CAAATACCTGACAGTATAGA+AGG - chr6_4:21346021-21346040 None:intergenic 35.0%
GCCATTAAGATTTCAGGAAT+TGG + chr6_4:21346053-21346072 Msa0981780:intron 35.0%
TTCAAAGTTAGAAGTCGTAG+TGG - chr6_4:21346260-21346279 None:intergenic 35.0%
!! TCCGAATTTTGGTAAAACTC+TGG - chr6_4:21346303-21346322 None:intergenic 35.0%
AACAGAAACAATGAGCCAAT+TGG + chr6_4:21346322-21346341 Msa0981780:intron 35.0%
! ACTTGTAGCATGCTTTTGTT+TGG + chr6_4:21346464-21346483 Msa0981780:intron 35.0%
!! GCTAAAATTGTTTTTCCCTG+TGG + chr6_4:21346664-21346683 Msa0981780:intron 35.0%
!! CTGGAATTACGACTACTTTT+TGG - chr6_4:21346704-21346723 None:intergenic 35.0%
ACTAAAGTTCTTACCTATGC+TGG - chr6_4:21346723-21346742 None:intergenic 35.0%
! TTATGAATCTTTTGACGAGG+TGG + chr6_4:21347001-21347020 Msa0981780:intron 35.0%
TTTGACGAGGTGGTTTAAAA+TGG + chr6_4:21347011-21347030 Msa0981780:intron 35.0%
! TCTTTTGGATTGAATCCTTC+TGG - chr6_4:21347123-21347142 None:intergenic 35.0%
GCTGAATTCATTTCCATTCA+GGG - chr6_4:21347272-21347291 None:intergenic 35.0%
AGCTGAATTCATTTCCATTC+AGG - chr6_4:21347273-21347292 None:intergenic 35.0%
!! TAATTTTCATGGCCTTGATG+TGG + chr6_4:21347415-21347434 Msa0981780:intron 35.0%
GCATTAATTACTCCACATCA+AGG - chr6_4:21347430-21347449 None:intergenic 35.0%
AGTTTGCAGATTGTGTTAGT+GGG + chr6_4:21347455-21347474 Msa0981780:intron 35.0%
!! TATATCCCATTTCTAGCTTG+CGG + chr6_4:21347502-21347521 Msa0981780:CDS 35.0%
CAAATAACACTACGAATCAG+TGG - chr6_4:21347719-21347738 None:intergenic 35.0%
!! CACTGATTCGTAGTGTTATT+TGG + chr6_4:21347717-21347736 Msa0981780:three_prime_UTR 35.0%
! ATTTGGGACAACAAAAGACT+CGG - chr6_4:21347828-21347847 None:intergenic 35.0%
!! AGCTATTGATTTGCAGCCAA+TGG + chr6_4:21344478-21344497 Msa0981780:CDS 40.0%
ACCTGGATAACACCTTCAAT+CGG - chr6_4:21344506-21344525 None:intergenic 40.0%
CAAATCGTGTTTCGAAATGG+GGG - chr6_4:21344617-21344636 None:intergenic 40.0%
! AAACCTTTTTCCACTAGGTC+GGG - chr6_4:21344855-21344874 None:intergenic 40.0%
ATGTGGTTGAAATTCGACAG+AGG - chr6_4:21344892-21344911 None:intergenic 40.0%
! AAGGATCAATTTGGAGCAAC+AGG - chr6_4:21345110-21345129 None:intergenic 40.0%
GTTGCTCCAAATTGATCCTT+TGG + chr6_4:21345110-21345129 Msa0981780:intron 40.0%
!!! ATCCTTTGGTGATGTCGTTT+TGG + chr6_4:21345124-21345143 Msa0981780:intron 40.0%
AACCAAAACGACATCACCAA+AGG - chr6_4:21345129-21345148 None:intergenic 40.0%
!!! GTGATGTCGTTTTGGTTTGT+TGG + chr6_4:21345132-21345151 Msa0981780:intron 40.0%
!!! CGTTTTGGTTTGTTGGAACT+TGG + chr6_4:21345139-21345158 Msa0981780:intron 40.0%
!! TTGGTTTGTTGGAACTTGGA+AGG + chr6_4:21345143-21345162 Msa0981780:intron 40.0%
GGAACTTGGAAGGATCATAT+AGG + chr6_4:21345153-21345172 Msa0981780:intron 40.0%
TTACCCTCAACCTCTTTCAT+CGG + chr6_4:21345400-21345419 Msa0981780:intron 40.0%
TTCATCCATGTCATGAAGTC+CGG - chr6_4:21345551-21345570 None:intergenic 40.0%
GCTTACTGCAAGTATGAGTT+GGG - chr6_4:21345584-21345603 None:intergenic 40.0%
TGCTTACTGCAAGTATGAGT+TGG - chr6_4:21345585-21345604 None:intergenic 40.0%
AGATAAGGTAGTAGACTGAC+TGG - chr6_4:21345774-21345793 None:intergenic 40.0%
TTAAACTATACACCACGCAC+TGG - chr6_4:21345818-21345837 None:intergenic 40.0%
GTTACTCATGTACTGAAGGA+AGG + chr6_4:21345953-21345972 Msa0981780:CDS 40.0%
TCCTGAAATCTTAATGGCGA+GGG - chr6_4:21346051-21346070 None:intergenic 40.0%
TTCCTGAAATCTTAATGGCG+AGG - chr6_4:21346052-21346071 None:intergenic 40.0%
!! GTAGCATGCTTTTGTTTGGT+TGG + chr6_4:21346468-21346487 Msa0981780:intron 40.0%
AGTAGTCGTAATTCCAGCAT+AGG + chr6_4:21346707-21346726 Msa0981780:CDS 40.0%
! ACGAGGTGGTTTAAAATGGT+AGG + chr6_4:21347015-21347034 Msa0981780:intron 40.0%
! GGTGGTTTAAAATGGTAGGA+AGG + chr6_4:21347019-21347038 Msa0981780:intron 40.0%
! GGTTTAAAATGGTAGGAAGG+CGG + chr6_4:21347022-21347041 Msa0981780:intron 40.0%
! GTTTAAAATGGTAGGAAGGC+GGG + chr6_4:21347023-21347042 Msa0981780:intron 40.0%
TTGGATTGAATCCTTCTGGA+GGG - chr6_4:21347119-21347138 None:intergenic 40.0%
TTTGGATTGAATCCTTCTGG+AGG - chr6_4:21347120-21347139 None:intergenic 40.0%
! AGAAGCCGATGAAGATCTTT+TGG - chr6_4:21347138-21347157 None:intergenic 40.0%
TTCAAAGTTGCATCCCTGAA+TGG + chr6_4:21347256-21347275 Msa0981780:intron 40.0%
GAGTTTGCAGATTGTGTTAG+TGG + chr6_4:21347454-21347473 Msa0981780:intron 40.0%
!! ATATCCCATTTCTAGCTTGC+GGG + chr6_4:21347503-21347522 Msa0981780:CDS 40.0%
!! ACTCTAGAGCTCTCTTGTAA+GGG - chr6_4:21347627-21347646 None:intergenic 40.0%
!! AACTCTAGAGCTCTCTTGTA+AGG - chr6_4:21347628-21347647 None:intergenic 40.0%
!!! GGGAGAGATTTTCAAGTTCT+CGG - chr6_4:21347675-21347694 None:intergenic 40.0%
AGAACTTGAAAATCTCTCCC+TGG + chr6_4:21347675-21347694 Msa0981780:CDS 40.0%
TATGCAAGATCAGGAATCCA+GGG - chr6_4:21347695-21347714 None:intergenic 40.0%
ATATGCAAGATCAGGAATCC+AGG - chr6_4:21347696-21347715 None:intergenic 40.0%
ATCAGTGGATATGCAAGATC+AGG - chr6_4:21347704-21347723 None:intergenic 40.0%
AAAGACTCGGAAGAAAGGAA+AGG - chr6_4:21347815-21347834 None:intergenic 40.0%
CAACAAAAGACTCGGAAGAA+AGG - chr6_4:21347820-21347839 None:intergenic 40.0%
!! TCCGATTGAAGGTGTTATCC+AGG + chr6_4:21344502-21344521 Msa0981780:CDS 45.0%
TAGTTATATCACCCTGCACC+TGG - chr6_4:21344523-21344542 None:intergenic 45.0%
! AACCTTTTTCCACTAGGTCG+GGG - chr6_4:21344854-21344873 None:intergenic 45.0%
AGTTACCGGACTTCATGACA+TGG + chr6_4:21345543-21345562 Msa0981780:intron 45.0%
ACTCATGTACTGAAGGAAGG+AGG + chr6_4:21345956-21345975 Msa0981780:CDS 45.0%
CTCATGTACTGAAGGAAGGA+GGG + chr6_4:21345957-21345976 Msa0981780:CDS 45.0%
CACAAGCCTTCTATACTGTC+AGG + chr6_4:21346012-21346031 Msa0981780:CDS 45.0%
CCTGAAATCTTAATGGCGAG+GGG - chr6_4:21346050-21346069 None:intergenic 45.0%
GCTTTGCAAAAGTCACCACA+GGG - chr6_4:21346682-21346701 None:intergenic 45.0%
TTAGTTGTTCACCCTTGCAG+AGG + chr6_4:21347068-21347087 Msa0981780:intron 45.0%
AACTGCAAATGCCTCTGCAA+GGG - chr6_4:21347082-21347101 None:intergenic 45.0%
AAACTGCAAATGCCTCTGCA+AGG - chr6_4:21347083-21347102 None:intergenic 45.0%
GAAAATTACTCCCCTCCAGA+AGG + chr6_4:21347105-21347124 Msa0981780:CDS 45.0%
! TGGATTGAATCCTTCTGGAG+GGG - chr6_4:21347118-21347137 None:intergenic 45.0%
!! TCTTCATCGGCTTCTTGAGA+AGG + chr6_4:21347143-21347162 Msa0981780:CDS 45.0%
AGAAGGTTGGAAGTCCATCA+GGG + chr6_4:21347160-21347179 Msa0981780:CDS 45.0%
TTGCAGATTGTGTTAGTGGG+TGG + chr6_4:21347458-21347477 Msa0981780:intron 45.0%
! AGATTGTGTTAGTGGGTGGT+TGG + chr6_4:21347462-21347481 Msa0981780:intron 45.0%
!! TATCCCATTTCTAGCTTGCG+GGG + chr6_4:21347504-21347523 Msa0981780:CDS 45.0%
TATCCACTGCCTAAAGTTGC+TGG + chr6_4:21347556-21347575 Msa0981780:CDS 45.0%
ATCCACTGCCTAAAGTTGCT+GGG + chr6_4:21347557-21347576 Msa0981780:CDS 45.0%
TATGTTCCCCCAGCAACTTT+AGG - chr6_4:21347568-21347587 None:intergenic 45.0%
! TCTAGAGCTCTCTTGTAAGG+GGG - chr6_4:21347625-21347644 None:intergenic 45.0%
!! CTCTAGAGCTCTCTTGTAAG+GGG - chr6_4:21347626-21347645 None:intergenic 45.0%
ACACCTTCAATCGGAGCCAT+TGG - chr6_4:21344497-21344516 None:intergenic 50.0%
!! TGAAGGTGTTATCCAGGTGC+AGG + chr6_4:21344508-21344527 Msa0981780:CDS 50.0%
!! GAAGGTGTTATCCAGGTGCA+GGG + chr6_4:21344509-21344528 Msa0981780:CDS 50.0%
TAATGCTCGGACTGCTGAAG+TGG + chr6_4:21344541-21344560 Msa0981780:CDS 50.0%
ACCATCGCACACAACAAGGT+CGG - chr6_4:21345285-21345304 None:intergenic 50.0%
GGTCCGATGAAAGAGGTTGA+GGG - chr6_4:21345406-21345425 None:intergenic 50.0%
TGGTCCGATGAAAGAGGTTG+AGG - chr6_4:21345407-21345426 None:intergenic 50.0%
CAACCTCTTTCATCGGACCA+AGG + chr6_4:21345407-21345426 Msa0981780:intron 50.0%
TCTCCTTGGTCCGATGAAAG+AGG - chr6_4:21345413-21345432 None:intergenic 50.0%
CCCCTCGCCATTAAGATTTC+AGG + chr6_4:21346047-21346066 Msa0981780:intron 50.0%
ACTCCTACAGGTGCACTTGT+TGG - chr6_4:21346413-21346432 None:intergenic 50.0%
GGCTTTGCAAAAGTCACCAC+AGG - chr6_4:21346683-21346702 None:intergenic 50.0%
! GCAAGTGTTTGGAGGCACAA+GGG - chr6_4:21346945-21346964 None:intergenic 50.0%
! TGCAAGTGTTTGGAGGCACA+AGG - chr6_4:21346946-21346965 None:intergenic 50.0%
!! CATCGGCTTCTTGAGAAGGT+TGG + chr6_4:21347147-21347166 Msa0981780:CDS 50.0%
GAGAAGGTTGGAAGTCCATC+AGG + chr6_4:21347159-21347178 Msa0981780:CDS 50.0%
GAAGGTTGGAAGTCCATCAG+GGG + chr6_4:21347161-21347180 Msa0981780:CDS 50.0%
CCTGTATCATCTACCCCTGA+TGG - chr6_4:21347177-21347196 None:intergenic 50.0%
CCATCAGGGGTAGATGATAC+AGG + chr6_4:21347174-21347193 Msa0981780:CDS 50.0%
! TGTGTTAGTGGGTGGTTGGA+AGG + chr6_4:21347466-21347485 Msa0981780:CDS 50.0%
GTGGTTGGAAGGCCCTAATA+AGG + chr6_4:21347477-21347496 Msa0981780:CDS 50.0%
TCCACTGCCTAAAGTTGCTG+GGG + chr6_4:21347558-21347577 Msa0981780:CDS 50.0%
TGGGGGAACATATCAGAGCT+TGG + chr6_4:21347576-21347595 Msa0981780:CDS 50.0%
TAGAGCTCTCTTGTAAGGGG+GGG - chr6_4:21347623-21347642 None:intergenic 50.0%
CTAGAGCTCTCTTGTAAGGG+GGG - chr6_4:21347624-21347643 None:intergenic 50.0%
CAGCCAATGGCTCCGATTGA+AGG + chr6_4:21344491-21344510 Msa0981780:CDS 55.0%
ATGTATCCACCCCGACCTAG+TGG + chr6_4:21344842-21344861 Msa0981780:intron 55.0%
! CTTTTTCCACTAGGTCGGGG+TGG - chr6_4:21344851-21344870 None:intergenic 55.0%
CACCCCGACCTAGTGGAAAA+AGG + chr6_4:21344849-21344868 Msa0981780:intron 55.0%
GAGCACCATCGCACACAACA+AGG - chr6_4:21345289-21345308 None:intergenic 55.0%
GCACCAACAAGTGCACCTGT+AGG + chr6_4:21346407-21346426 Msa0981780:intron 55.0%
GGTCCCCGCAAGCTAGAAAT+GGG - chr6_4:21347510-21347529 None:intergenic 55.0%
AGGTCCCCGCAAGCTAGAAA+TGG - chr6_4:21347511-21347530 None:intergenic 55.0%
CCACTGCCTAAAGTTGCTGG+GGG + chr6_4:21347559-21347578 Msa0981780:CDS 55.0%
GGGGCAATAGGAGGTTGTAC+TGG - chr6_4:21347604-21347623 None:intergenic 55.0%
TTGTAAGGGGGGGCAATAGG+AGG - chr6_4:21347613-21347632 None:intergenic 55.0%
CTCTTGTAAGGGGGGGCAAT+AGG - chr6_4:21347616-21347635 None:intergenic 55.0%
! GCCGACCTTGTTGTGTGCGA+TGG + chr6_4:21345281-21345300 Msa0981780:CDS 60.0%
GTGTGCGATGGTGCTCCTGA+TGG + chr6_4:21345293-21345312 Msa0981780:CDS 60.0%
AATGCGCACACACCAGTGCG+TGG + chr6_4:21345803-21345822 Msa0981780:intron 60.0%
! CTAGCTTGCGGGGACCTTAC+TGG + chr6_4:21347514-21347533 Msa0981780:CDS 60.0%
CCCCCAGCAACTTTAGGCAG+TGG - chr6_4:21347562-21347581 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 21344443 21347981 21344443 ID=Msa0981780;Name=Msa0981780
chr6_4 mRNA 21344443 21347981 21344443 ID=Msa0981780-mRNA-1;Parent=Msa0981780;Name=Msa0981780-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.85|1|1|1|7|276|246
chr6_4 exon 21344443 21344562 21344443 ID=Msa0981780-mRNA-1:exon:6544;Parent=Msa0981780-mRNA-1
chr6_4 exon 21345254 21345314 21345254 ID=Msa0981780-mRNA-1:exon:6545;Parent=Msa0981780-mRNA-1
chr6_4 exon 21345545 21345597 21345545 ID=Msa0981780-mRNA-1:exon:6546;Parent=Msa0981780-mRNA-1
chr6_4 exon 21345941 21346033 21345941 ID=Msa0981780-mRNA-1:exon:6547;Parent=Msa0981780-mRNA-1
chr6_4 exon 21346665 21346728 21346665 ID=Msa0981780-mRNA-1:exon:6548;Parent=Msa0981780-mRNA-1
chr6_4 exon 21347088 21347195 21347088 ID=Msa0981780-mRNA-1:exon:6549;Parent=Msa0981780-mRNA-1
chr6_4 exon 21347464 21347981 21347464 ID=Msa0981780-mRNA-1:exon:6550;Parent=Msa0981780-mRNA-1
chr6_4 CDS 21344443 21344562 21344443 ID=Msa0981780-mRNA-1:cds;Parent=Msa0981780-mRNA-1
chr6_4 CDS 21345254 21345314 21345254 ID=Msa0981780-mRNA-1:cds;Parent=Msa0981780-mRNA-1
chr6_4 CDS 21345545 21345597 21345545 ID=Msa0981780-mRNA-1:cds;Parent=Msa0981780-mRNA-1
chr6_4 CDS 21345941 21346033 21345941 ID=Msa0981780-mRNA-1:cds;Parent=Msa0981780-mRNA-1
chr6_4 CDS 21346665 21346728 21346665 ID=Msa0981780-mRNA-1:cds;Parent=Msa0981780-mRNA-1
chr6_4 CDS 21347088 21347195 21347088 ID=Msa0981780-mRNA-1:cds;Parent=Msa0981780-mRNA-1
chr6_4 CDS 21347464 21347705 21347464 ID=Msa0981780-mRNA-1:cds;Parent=Msa0981780-mRNA-1
chr6_4 three_prime_UTR 21347706 21347981 21347706 ID=Msa0981780-mRNA-1:three_prime_utr;Parent=Msa0981780-mRNA-1
Gene Sequence

>Msa0981780

ATGATATGCAGGGATGAAAAGCTTCCTCTTATTGTAGCTATTGATTTGCAGCCAATGGCTCCGATTGAAGGTGTTATCCAGGTGCAGGGTGATATAACTAATGCTCGGACTGCTGAAGTGGTCATTAGACATTTTGATGGTTGCAAGGCCGACCTTGTTGTGTGCGATGGTGCTCCTGATGTTACCGGACTTCATGACATGGATGAATTTGTTCAATCCCAACTCATACTTGCAGGGTTAACAATTGTTACTCATGTACTGAAGGAAGGAGGGAAGTTCATTGCGAAGATATTTAGAGGAAAGGACACAAGCCTTCTATACTGTCAGCTAAAATTGTTTTTCCCTGTGGTGACTTTTGCAAAGCCAAAAAGTAGTCGTAATTCCAGCATAGAGGCATTTGCAGTTTGTGAAAATTACTCCCCTCCAGAAGGATTCAATCCAAAAGATCTTCATCGGCTTCTTGAGAAGGTTGGAAGTCCATCAGGGGTAGATGATACAGATTGTGTTAGTGGGTGGTTGGAAGGCCCTAATAAGGTGTATATCCCATTTCTAGCTTGCGGGGACCTTACTGGATATGATTCTGATAGGTCATATCCACTGCCTAAAGTTGCTGGGGGAACATATCAGAGCTTGGATCCAGTACAACCTCCTATTGCCCCCCCTTACAAGAGAGCTCTAGAGTTAAAAAAAGCATCAACTCAAGGATTCCGAGAACTTGAAAATCTCTCCCTGGATTCCTGA

Protein sequence

>Msa0981780

MICRDEKLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPKDLHRLLEKVGSPSGVDDTDCVSGWLEGPNKVYIPFLACGDLTGYDSDRSYPLPKVAGGTYQSLDPVQPPIAPPYKRALELKKASTQGFRELENLSLDS*