Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0981780 | XP_003593568.1 | 97.951 | 244 | 5 | 0 | 3 | 246 | 73 | 316 | 3.56e-174 | 492 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0981780 | sp|Q9UET6|TRM7_HUMAN | 58.636 | 220 | 83 | 1 | 11 | 230 | 71 | 282 | 1.08e-79 | 245 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0981780 | G7IPS4 | 97.951 | 244 | 5 | 0 | 3 | 246 | 73 | 316 | 1.70e-174 | 492 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0192070 | Msa0981780 | 0.860795 | 1.609903e-63 | -8.615850e-47 |
Msa0272520 | Msa0981780 | 0.971358 | 4.874902e-133 | -8.615850e-47 |
Msa0312730 | Msa0981780 | 0.812019 | 5.231984e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0981780 | MtrunA17_Chr2g0282131 | 97.951 | 244 | 5 | 0 | 3 | 246 | 73 | 316 | 3.27e-178 | 492 |
Msa0981780 | MtrunA17_Chr4g0035141 | 33.758 | 157 | 97 | 5 | 10 | 160 | 71 | 226 | 9.64e-20 | 88.2 |
Msa0981780 | MtrunA17_Chr4g0040381 | 31.847 | 157 | 100 | 5 | 10 | 160 | 71 | 226 | 1.78e-18 | 84.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0981780 | AT5G01230.1 | 92.308 | 234 | 17 | 1 | 4 | 236 | 74 | 307 | 2.63e-160 | 446 |
Msa0981780 | AT4G25730.1 | 32.335 | 167 | 99 | 7 | 6 | 161 | 62 | 225 | 1.19e-17 | 82.4 |
Find 90 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTGCAGTGATAATATTTA+TGG | 0.099808 | 6_4:+21347753 | Msa0981780:three_prime_UTR |
CACTGATTCGTAGTGTTATT+TGG | 0.132341 | 6_4:+21347717 | Msa0981780:three_prime_UTR |
AATGGGATATACACCTTATT+AGG | 0.161234 | 6_4:-21347490 | None:intergenic |
ATCGGAAAAGTTTATAAGTT+TGG | 0.192523 | 6_4:-21347879 | None:intergenic |
AGGAATAATTTGTATTCATT+TGG | 0.244032 | 6_4:-21347842 | None:intergenic |
AGAAGCCGATGAAGATCTTT+TGG | 0.261957 | 6_4:-21347135 | None:intergenic |
CTAGCTTGCGGGGACCTTAC+TGG | 0.280561 | 6_4:+21347514 | Msa0981780:CDS |
TCGGAAAAGTTTATAAGTTT+GGG | 0.305571 | 6_4:-21347878 | None:intergenic |
GTTTGGGTTATGATTATCTA+AGG | 0.309017 | 6_4:-21347862 | None:intergenic |
TTCATTGCGAAGATATTTAG+AGG | 0.318467 | 6_4:+21345983 | Msa0981780:CDS |
ATATCCCATTTCTAGCTTGC+GGG | 0.337528 | 6_4:+21347503 | Msa0981780:CDS |
GGAATAATTTGTATTCATTT+GGG | 0.341056 | 6_4:-21347841 | None:intergenic |
AACTCTAGAGCTCTCTTGTA+AGG | 0.363418 | 6_4:-21347625 | None:intergenic |
TATCCACTGCCTAAAGTTGC+TGG | 0.400318 | 6_4:+21347556 | Msa0981780:CDS |
CAAATACCTGACAGTATAGA+AGG | 0.404894 | 6_4:-21346018 | None:intergenic |
AGGTCCCCGCAAGCTAGAAA+TGG | 0.414251 | 6_4:-21347508 | None:intergenic |
GAGAAGGTTGGAAGTCCATC+AGG | 0.420443 | 6_4:+21347159 | Msa0981780:CDS |
ACTAAAGTTCTTACCTATGC+TGG | 0.426966 | 6_4:-21346720 | None:intergenic |
CAGCCAATGGCTCCGATTGA+AGG | 0.431915 | 6_4:+21344491 | Msa0981780:CDS |
ATGGGATATACACCTTATTA+GGG | 0.432233 | 6_4:-21347489 | None:intergenic |
AAATCAATAGCTACAATAAG+AGG | 0.445424 | 6_4:-21344467 | None:intergenic |
TGCTTACTGCAAGTATGAGT+TGG | 0.458021 | 6_4:-21345582 | None:intergenic |
GAGTTTGCAGATTGTGTTAG+TGG | 0.463559 | 6_4:+21347454 | Msa0981780:intron |
CATCGGCTTCTTGAGAAGGT+TGG | 0.470461 | 6_4:+21347147 | Msa0981780:CDS |
CAACAAAAGACTCGGAAGAA+AGG | 0.471356 | 6_4:-21347817 | None:intergenic |
TTCATCCATGTCATGAAGTC+CGG | 0.472049 | 6_4:-21345548 | None:intergenic |
ATCAGTGGATATGCAAGATC+AGG | 0.472705 | 6_4:-21347701 | None:intergenic |
TTACTGGATATGATTCTGAT+AGG | 0.474435 | 6_4:+21347530 | Msa0981780:CDS |
GCTTACTGCAAGTATGAGTT+GGG | 0.475427 | 6_4:-21345581 | None:intergenic |
TGAAGGTGTTATCCAGGTGC+AGG | 0.479392 | 6_4:+21344508 | Msa0981780:CDS |
GGCTTTGCAAAAGTCACCAC+AGG | 0.483167 | 6_4:-21346680 | None:intergenic |
CTTGCTGCATCATGATATGC+AGG | 0.484698 | 6_4:+21344432 | None:intergenic |
ATCCACTGCCTAAAGTTGCT+GGG | 0.488195 | 6_4:+21347557 | Msa0981780:CDS |
CCATCAGGGGTAGATGATAC+AGG | 0.496409 | 6_4:+21347174 | Msa0981780:CDS |
AGCTATTGATTTGCAGCCAA+TGG | 0.497084 | 6_4:+21344478 | Msa0981780:CDS |
TATATCCCATTTCTAGCTTG+CGG | 0.497714 | 6_4:+21347502 | Msa0981780:CDS |
TCTTCATCGGCTTCTTGAGA+AGG | 0.501095 | 6_4:+21347143 | Msa0981780:CDS |
ACACCTTCAATCGGAGCCAT+TGG | 0.510050 | 6_4:-21344494 | None:intergenic |
TTGGATTGAATCCTTCTGGA+GGG | 0.511479 | 6_4:-21347116 | None:intergenic |
GGGGCAATAGGAGGTTGTAC+TGG | 0.511552 | 6_4:-21347601 | None:intergenic |
GTGGTTGGAAGGCCCTAATA+AGG | 0.511729 | 6_4:+21347477 | Msa0981780:CDS |
GGTCCCCGCAAGCTAGAAAT+GGG | 0.513086 | 6_4:-21347507 | None:intergenic |
TCCGATTGAAGGTGTTATCC+AGG | 0.517786 | 6_4:+21344502 | Msa0981780:CDS |
TAGTTATATCACCCTGCACC+TGG | 0.518978 | 6_4:-21344520 | None:intergenic |
CACAAGCCTTCTATACTGTC+AGG | 0.519250 | 6_4:+21346012 | Msa0981780:CDS |
TATCAGAATCATATCCAGTA+AGG | 0.519570 | 6_4:-21347528 | None:intergenic |
ATATGCAAGATCAGGAATCC+AGG | 0.523232 | 6_4:-21347693 | None:intergenic |
ACTCTAGAGCTCTCTTGTAA+GGG | 0.527637 | 6_4:-21347624 | None:intergenic |
TGCGAAGATATTTAGAGGAA+AGG | 0.528045 | 6_4:+21345988 | Msa0981780:CDS |
TCAATCCAAAAGATCTTCAT+CGG | 0.528148 | 6_4:+21347130 | Msa0981780:CDS |
TGTGTTAGTGGGTGGTTGGA+AGG | 0.530748 | 6_4:+21347466 | Msa0981780:CDS |
ACCTGGATAACACCTTCAAT+CGG | 0.534040 | 6_4:-21344503 | None:intergenic |
TGGATTGAATCCTTCTGGAG+GGG | 0.538206 | 6_4:-21347115 | None:intergenic |
GCCGACCTTGTTGTGTGCGA+TGG | 0.542550 | 6_4:+21345281 | Msa0981780:CDS |
AGTTTGCAGATTGTGTTAGT+GGG | 0.550426 | 6_4:+21347455 | Msa0981780:intron |
CCTGTATCATCTACCCCTGA+TGG | 0.551247 | 6_4:-21347174 | None:intergenic |
AGATTGTGTTAGTGGGTGGT+TGG | 0.553179 | 6_4:+21347462 | Msa0981780:intron |
AGTAGTCGTAATTCCAGCAT+AGG | 0.557095 | 6_4:+21346707 | Msa0981780:CDS |
TCCACTGCCTAAAGTTGCTG+GGG | 0.574703 | 6_4:+21347558 | Msa0981780:CDS |
GAAAATTACTCCCCTCCAGA+AGG | 0.574957 | 6_4:+21347105 | Msa0981780:CDS |
TTGCAGATTGTGTTAGTGGG+TGG | 0.575776 | 6_4:+21347458 | Msa0981780:intron |
CTCTAGAGCTCTCTTGTAAG+GGG | 0.577035 | 6_4:-21347623 | None:intergenic |
CTCATGTACTGAAGGAAGGA+GGG | 0.582274 | 6_4:+21345957 | Msa0981780:CDS |
AGAACTTGAAAATCTCTCCC+TGG | 0.583460 | 6_4:+21347675 | Msa0981780:CDS |
GTGTGCGATGGTGCTCCTGA+TGG | 0.586485 | 6_4:+21345293 | Msa0981780:CDS |
TATCCCATTTCTAGCTTGCG+GGG | 0.586932 | 6_4:+21347504 | Msa0981780:CDS |
TAATGCTCGGACTGCTGAAG+TGG | 0.587470 | 6_4:+21344541 | Msa0981780:CDS |
AATTGTTACTCATGTACTGA+AGG | 0.593299 | 6_4:+21345949 | Msa0981780:CDS |
GTTACTCATGTACTGAAGGA+AGG | 0.596222 | 6_4:+21345953 | Msa0981780:CDS |
TTTGGATTGAATCCTTCTGG+AGG | 0.598385 | 6_4:-21347117 | None:intergenic |
CTAGAGCTCTCTTGTAAGGG+GGG | 0.605069 | 6_4:-21347621 | None:intergenic |
ATTTGGGACAACAAAAGACT+CGG | 0.605473 | 6_4:-21347825 | None:intergenic |
AGAAGGTTGGAAGTCCATCA+GGG | 0.611108 | 6_4:+21347160 | Msa0981780:CDS |
CAAATAACACTACGAATCAG+TGG | 0.612508 | 6_4:-21347716 | None:intergenic |
ACTCATGTACTGAAGGAAGG+AGG | 0.615741 | 6_4:+21345956 | Msa0981780:CDS |
ACATTATCAACATTATCCAT+CGG | 0.623898 | 6_4:-21347897 | None:intergenic |
ACCATCGCACACAACAAGGT+CGG | 0.624891 | 6_4:-21345282 | None:intergenic |
TATGCAAGATCAGGAATCCA+GGG | 0.628400 | 6_4:-21347692 | None:intergenic |
GAGCACCATCGCACACAACA+AGG | 0.633636 | 6_4:-21345286 | None:intergenic |
TCTAGAGCTCTCTTGTAAGG+GGG | 0.635566 | 6_4:-21347622 | None:intergenic |
ATAATATGAGTAAAATTGTG+AGG | 0.639750 | 6_4:+21347962 | Msa0981780:three_prime_UTR |
GAAGGTGTTATCCAGGTGCA+GGG | 0.645167 | 6_4:+21344509 | Msa0981780:CDS |
AGGGTGATATAACTAATGCT+CGG | 0.647655 | 6_4:+21344528 | Msa0981780:CDS |
AAAGACTCGGAAGAAAGGAA+AGG | 0.655032 | 6_4:-21347812 | None:intergenic |
GCTTTGCAAAAGTCACCACA+GGG | 0.664958 | 6_4:-21346679 | None:intergenic |
TAGAGCTCTCTTGTAAGGGG+GGG | 0.669752 | 6_4:-21347620 | None:intergenic |
TTGCTGCATCATGATATGCA+GGG | 0.684050 | 6_4:+21344433 | None:intergenic |
CCACTGCCTAAAGTTGCTGG+GGG | 0.698850 | 6_4:+21347559 | Msa0981780:CDS |
AGTTACCGGACTTCATGACA+TGG | 0.714363 | 6_4:+21345543 | Msa0981780:intron |
GAAGGTTGGAAGTCCATCAG+GGG | 0.734678 | 6_4:+21347161 | Msa0981780:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GAAAAAAGAAAAAGAAATTA+AGG | - | chr6_4:21344937-21344956 | None:intergenic | 15.0% |
!! | AAAAAAAATAGTAACAAACA+AGG | - | chr6_4:21346748-21346767 | None:intergenic | 15.0% |
!! | TATTAGATTTGAATCTTTAA+CGG | + | chr6_4:21346968-21346987 | Msa0981780:intron | 15.0% |
!! | TTAATGTATTAGAATTGACA+TGG | - | chr6_4:21345461-21345480 | None:intergenic | 20.0% |
!! | TTGGTTGTAGTTTAAAAATT+TGG | + | chr6_4:21345507-21345526 | Msa0981780:intron | 20.0% |
!!! | TGTAACTATTTATCTCTTTT+AGG | + | chr6_4:21345629-21345648 | Msa0981780:intron | 20.0% |
!!! | TGATAGTTGATATTTCATTA+TGG | + | chr6_4:21345669-21345688 | Msa0981780:intron | 20.0% |
!!! | GGTGTATAGTTTAATTTAAA+CGG | + | chr6_4:21345824-21345843 | Msa0981780:intron | 20.0% |
!! | AGTTATAAAAGCTAACTAAA+AGG | - | chr6_4:21346141-21346160 | None:intergenic | 20.0% |
!!! | TCATTTCTGGAAATAAATTA+TGG | + | chr6_4:21346179-21346198 | Msa0981780:intron | 20.0% |
!!! | GACAAAATAATTGACTTTAA+AGG | + | chr6_4:21346347-21346366 | Msa0981780:intron | 20.0% |
!! | TGCTAAATAACTCATAATAA+AGG | + | chr6_4:21346564-21346583 | Msa0981780:intron | 20.0% |
!! | GCTAAATAACTCATAATAAA+GGG | + | chr6_4:21346565-21346584 | Msa0981780:intron | 20.0% |
!! | CTAAATAACTCATAATAAAG+GGG | + | chr6_4:21346566-21346585 | Msa0981780:intron | 20.0% |
!!! | GTATATGGAATTATGATTTT+TGG | - | chr6_4:21346624-21346643 | None:intergenic | 20.0% |
!! | AGTTTCTTTATGAATTGTTA+TGG | + | chr6_4:21346798-21346817 | Msa0981780:intron | 20.0% |
!!! | TCATGTATACTTAATTTTCA+TGG | + | chr6_4:21347404-21347423 | Msa0981780:intron | 20.0% |
!!! | GGAATAATTTGTATTCATTT+GGG | - | chr6_4:21347844-21347863 | None:intergenic | 20.0% |
!!! | AGGAATAATTTGTATTCATT+TGG | - | chr6_4:21347845-21347864 | None:intergenic | 20.0% |
! | AAATCAATAGCTACAATAAG+AGG | - | chr6_4:21344470-21344489 | None:intergenic | 25.0% |
!!! | TGTTTCTGCTCTAAAATTTA+TGG | + | chr6_4:21344793-21344812 | Msa0981780:intron | 25.0% |
! | AGTGAAATAATGAAAAGACA+TGG | + | chr6_4:21345002-21345021 | Msa0981780:intron | 25.0% |
! | ATACATTAACTCTGATATGT+AGG | + | chr6_4:21345472-21345491 | Msa0981780:intron | 25.0% |
!! | ATTTCATTATGGTTACCTTT+TGG | + | chr6_4:21345680-21345699 | Msa0981780:intron | 25.0% |
! | AACAAGCATATGTCTATTAA+AGG | - | chr6_4:21345747-21345766 | None:intergenic | 25.0% |
! | CGCATTTATTAGATTAGATA+AGG | - | chr6_4:21345789-21345808 | None:intergenic | 25.0% |
! | TATAAAAGCTAACTAAAAGG+TGG | - | chr6_4:21346138-21346157 | None:intergenic | 25.0% |
!! | ATTACTTCCATTGTTTTCAA+AGG | - | chr6_4:21346230-21346249 | None:intergenic | 25.0% |
!!! | CAATTATTTTGTCAACCAAT+TGG | - | chr6_4:21346340-21346359 | None:intergenic | 25.0% |
! | TTTGTATTTATCAAGAGAGT+AGG | - | chr6_4:21346383-21346402 | None:intergenic | 25.0% |
!!! | AGTTATATTTTAACTCCTAC+AGG | - | chr6_4:21346425-21346444 | None:intergenic | 25.0% |
! | ATTTAGATATGATCATGAGT+AGG | - | chr6_4:21346503-21346522 | None:intergenic | 25.0% |
! | ACAAAAAGCAACTTAGTATA+TGG | - | chr6_4:21346639-21346658 | None:intergenic | 25.0% |
!! | ATTTTCCATAGCTTAGTAAT+TGG | + | chr6_4:21346825-21346844 | Msa0981780:intron | 25.0% |
! | ATCTAATAATTGCAAGTGTT+TGG | - | chr6_4:21346956-21346975 | None:intergenic | 25.0% |
! | TGCTCTTAAGAATTTCTATA+AGG | - | chr6_4:21347211-21347230 | None:intergenic | 25.0% |
! | TGATTAACAATCTACATGTA+GGG | - | chr6_4:21347308-21347327 | None:intergenic | 25.0% |
! | ATGATTAACAATCTACATGT+AGG | - | chr6_4:21347309-21347328 | None:intergenic | 25.0% |
!!! | TTAAAAAAAGCATCAACTCA+AGG | + | chr6_4:21347646-21347665 | Msa0981780:CDS | 25.0% |
! | TCTTGCAGTGATAATATTTA+TGG | + | chr6_4:21347753-21347772 | Msa0981780:three_prime_UTR | 25.0% |
! | TCGGAAAAGTTTATAAGTTT+GGG | - | chr6_4:21347881-21347900 | None:intergenic | 25.0% |
! | ATCGGAAAAGTTTATAAGTT+TGG | - | chr6_4:21347882-21347901 | None:intergenic | 25.0% |
!! | AAACTTATAAACTTTTCCGA+TGG | + | chr6_4:21347881-21347900 | Msa0981780:three_prime_UTR | 25.0% |
! | ACATTATCAACATTATCCAT+CGG | - | chr6_4:21347900-21347919 | None:intergenic | 25.0% |
TCTAATTCTAATGACTAGAG+TGG | - | chr6_4:21344646-21344665 | None:intergenic | 30.0% | |
! | AACAAAAACCTTTTTCCACT+AGG | - | chr6_4:21344860-21344879 | None:intergenic | 30.0% |
CAAAAGAAAGCAGAAATATG+TGG | - | chr6_4:21344909-21344928 | None:intergenic | 30.0% | |
ATGAACTGAACAAAAGCAAT+TGG | - | chr6_4:21344959-21344978 | None:intergenic | 30.0% | |
AATAATGAAAAGACATGGTG+TGG | + | chr6_4:21345007-21345026 | Msa0981780:intron | 30.0% | |
GTCAAACTATACACATGAAT+TGG | - | chr6_4:21345071-21345090 | None:intergenic | 30.0% | |
!!! | ATATAGGTCTTGCTTTTTTG+AGG | + | chr6_4:21345169-21345188 | Msa0981780:intron | 30.0% |
! | TATGCATTTTCTTTACCATC+AGG | - | chr6_4:21345311-21345330 | None:intergenic | 30.0% |
TCAAATCATTTGTAGCTGTT+TGG | - | chr6_4:21345369-21345388 | None:intergenic | 30.0% | |
AGGGATAAATTTATTCTCCT+TGG | - | chr6_4:21345427-21345446 | None:intergenic | 30.0% | |
!! | ATGTAGGCTTTTTCTCATTT+TGG | + | chr6_4:21345488-21345507 | Msa0981780:intron | 30.0% |
CTAATTACTTACTTCTTGCA+GGG | + | chr6_4:21345920-21345939 | Msa0981780:intron | 30.0% | |
TAATTACTTACTTCTTGCAG+GGG | + | chr6_4:21345921-21345940 | Msa0981780:intron | 30.0% | |
AATTGTTACTCATGTACTGA+AGG | + | chr6_4:21345949-21345968 | Msa0981780:CDS | 30.0% | |
TTCATTGCGAAGATATTTAG+AGG | + | chr6_4:21345983-21346002 | Msa0981780:CDS | 30.0% | |
TCCAATTCCTGAAATCTTAA+TGG | - | chr6_4:21346057-21346076 | None:intergenic | 30.0% | |
!! | TGCTATTTCAAACAATGTGT+AGG | - | chr6_4:21346082-21346101 | None:intergenic | 30.0% |
AATAAAGTGACACTCATTTC+TGG | + | chr6_4:21346166-21346185 | Msa0981780:intron | 30.0% | |
! | TTCCAAACCTTTGAAAACAA+TGG | + | chr6_4:21346220-21346239 | Msa0981780:intron | 30.0% |
! | TTCCATTGTTTTCAAAGGTT+TGG | - | chr6_4:21346225-21346244 | None:intergenic | 30.0% |
! | TCCAGAGTTTTACCAAAATT+CGG | + | chr6_4:21346299-21346318 | Msa0981780:intron | 30.0% |
!!! | ATTGTTTCTGTTCCGAATTT+TGG | - | chr6_4:21346314-21346333 | None:intergenic | 30.0% |
ACTCATAATAAAGGGGAAAA+TGG | + | chr6_4:21346573-21346592 | Msa0981780:intron | 30.0% | |
AATAAAGGGGAAAATGGTAA+AGG | + | chr6_4:21346579-21346598 | Msa0981780:intron | 30.0% | |
AACTACCAATTACTAAGCTA+TGG | - | chr6_4:21346833-21346852 | None:intergenic | 30.0% | |
AAACAGCTAAATTCAACTAG+TGG | - | chr6_4:21346922-21346941 | None:intergenic | 30.0% | |
TAATAATTGCAAGTGTTTGG+AGG | - | chr6_4:21346953-21346972 | None:intergenic | 30.0% | |
! | TAGTTATGAATCTTTTGACG+AGG | + | chr6_4:21346998-21347017 | Msa0981780:intron | 30.0% |
TCAATCCAAAAGATCTTCAT+CGG | + | chr6_4:21347130-21347149 | Msa0981780:CDS | 30.0% | |
TAGATGATACAGGTATATGT+CGG | + | chr6_4:21347184-21347203 | Msa0981780:intron | 30.0% | |
ATGGGATATACACCTTATTA+GGG | - | chr6_4:21347492-21347511 | None:intergenic | 30.0% | |
AATGGGATATACACCTTATT+AGG | - | chr6_4:21347493-21347512 | None:intergenic | 30.0% | |
TATCAGAATCATATCCAGTA+AGG | - | chr6_4:21347531-21347550 | None:intergenic | 30.0% | |
TTACTGGATATGATTCTGAT+AGG | + | chr6_4:21347530-21347549 | Msa0981780:CDS | 30.0% | |
! | GTTTGGGTTATGATTATCTA+AGG | - | chr6_4:21347865-21347884 | None:intergenic | 30.0% |
AGGGTGATATAACTAATGCT+CGG | + | chr6_4:21344528-21344547 | Msa0981780:CDS | 35.0% | |
ACATCTGTCAACAGAATTGA+AGG | - | chr6_4:21344584-21344603 | None:intergenic | 35.0% | |
TCAAATCGTGTTTCGAAATG+GGG | - | chr6_4:21344618-21344637 | None:intergenic | 35.0% | |
CTCAAATCGTGTTTCGAAAT+GGG | - | chr6_4:21344619-21344638 | None:intergenic | 35.0% | |
ACTCAAATCGTGTTTCGAAA+TGG | - | chr6_4:21344620-21344639 | None:intergenic | 35.0% | |
TCTCATGATGAATGAACTTG+AGG | - | chr6_4:21344706-21344725 | None:intergenic | 35.0% | |
! | AAAACCTTTTTCCACTAGGT+CGG | - | chr6_4:21344856-21344875 | None:intergenic | 35.0% |
TTGGCTAGACTTTATAATGC+AGG | - | chr6_4:21345052-21345071 | None:intergenic | 35.0% | |
ACATCACCAAAGGATCAATT+TGG | - | chr6_4:21345119-21345138 | None:intergenic | 35.0% | |
! | TGTTTTCTCTTGTTCTGTTC+AGG | + | chr6_4:21345232-21345251 | Msa0981780:intron | 35.0% |
! | CAGGTCATTAGACATTTTGA+TGG | + | chr6_4:21345251-21345270 | Msa0981780:intron | 35.0% |
!! | TAGACATTTTGATGGTTGCA+AGG | + | chr6_4:21345259-21345278 | Msa0981780:CDS | 35.0% |
TGACATGGAGCAACAAAAAA+GGG | - | chr6_4:21345446-21345465 | None:intergenic | 35.0% | |
TTGACATGGAGCAACAAAAA+AGG | - | chr6_4:21345447-21345466 | None:intergenic | 35.0% | |
!!! | GCTTCATTTTTTGCAGTTAC+CGG | + | chr6_4:21345529-21345548 | Msa0981780:intron | 35.0% |
!!! | TATTTTTTGCGATCGCCAAA+AGG | - | chr6_4:21345698-21345717 | None:intergenic | 35.0% |
GCGATCGCAAAAAATATTGA+AGG | + | chr6_4:21345702-21345721 | Msa0981780:intron | 35.0% | |
GCATATGTCTATTAAAGGTG+AGG | - | chr6_4:21345742-21345761 | None:intergenic | 35.0% | |
ATGAAACTCTACGCAAATCA+AGG | - | chr6_4:21345856-21345875 | None:intergenic | 35.0% | |
GCTAATTACTTACTTCTTGC+AGG | + | chr6_4:21345919-21345938 | Msa0981780:intron | 35.0% | |
TGCGAAGATATTTAGAGGAA+AGG | + | chr6_4:21345988-21346007 | Msa0981780:CDS | 35.0% | |
CAAATACCTGACAGTATAGA+AGG | - | chr6_4:21346021-21346040 | None:intergenic | 35.0% | |
GCCATTAAGATTTCAGGAAT+TGG | + | chr6_4:21346053-21346072 | Msa0981780:intron | 35.0% | |
TTCAAAGTTAGAAGTCGTAG+TGG | - | chr6_4:21346260-21346279 | None:intergenic | 35.0% | |
!! | TCCGAATTTTGGTAAAACTC+TGG | - | chr6_4:21346303-21346322 | None:intergenic | 35.0% |
AACAGAAACAATGAGCCAAT+TGG | + | chr6_4:21346322-21346341 | Msa0981780:intron | 35.0% | |
! | ACTTGTAGCATGCTTTTGTT+TGG | + | chr6_4:21346464-21346483 | Msa0981780:intron | 35.0% |
!! | GCTAAAATTGTTTTTCCCTG+TGG | + | chr6_4:21346664-21346683 | Msa0981780:intron | 35.0% |
!! | CTGGAATTACGACTACTTTT+TGG | - | chr6_4:21346704-21346723 | None:intergenic | 35.0% |
ACTAAAGTTCTTACCTATGC+TGG | - | chr6_4:21346723-21346742 | None:intergenic | 35.0% | |
! | TTATGAATCTTTTGACGAGG+TGG | + | chr6_4:21347001-21347020 | Msa0981780:intron | 35.0% |
TTTGACGAGGTGGTTTAAAA+TGG | + | chr6_4:21347011-21347030 | Msa0981780:intron | 35.0% | |
! | TCTTTTGGATTGAATCCTTC+TGG | - | chr6_4:21347123-21347142 | None:intergenic | 35.0% |
GCTGAATTCATTTCCATTCA+GGG | - | chr6_4:21347272-21347291 | None:intergenic | 35.0% | |
AGCTGAATTCATTTCCATTC+AGG | - | chr6_4:21347273-21347292 | None:intergenic | 35.0% | |
!! | TAATTTTCATGGCCTTGATG+TGG | + | chr6_4:21347415-21347434 | Msa0981780:intron | 35.0% |
GCATTAATTACTCCACATCA+AGG | - | chr6_4:21347430-21347449 | None:intergenic | 35.0% | |
AGTTTGCAGATTGTGTTAGT+GGG | + | chr6_4:21347455-21347474 | Msa0981780:intron | 35.0% | |
!! | TATATCCCATTTCTAGCTTG+CGG | + | chr6_4:21347502-21347521 | Msa0981780:CDS | 35.0% |
CAAATAACACTACGAATCAG+TGG | - | chr6_4:21347719-21347738 | None:intergenic | 35.0% | |
!! | CACTGATTCGTAGTGTTATT+TGG | + | chr6_4:21347717-21347736 | Msa0981780:three_prime_UTR | 35.0% |
! | ATTTGGGACAACAAAAGACT+CGG | - | chr6_4:21347828-21347847 | None:intergenic | 35.0% |
!! | AGCTATTGATTTGCAGCCAA+TGG | + | chr6_4:21344478-21344497 | Msa0981780:CDS | 40.0% |
ACCTGGATAACACCTTCAAT+CGG | - | chr6_4:21344506-21344525 | None:intergenic | 40.0% | |
CAAATCGTGTTTCGAAATGG+GGG | - | chr6_4:21344617-21344636 | None:intergenic | 40.0% | |
! | AAACCTTTTTCCACTAGGTC+GGG | - | chr6_4:21344855-21344874 | None:intergenic | 40.0% |
ATGTGGTTGAAATTCGACAG+AGG | - | chr6_4:21344892-21344911 | None:intergenic | 40.0% | |
! | AAGGATCAATTTGGAGCAAC+AGG | - | chr6_4:21345110-21345129 | None:intergenic | 40.0% |
GTTGCTCCAAATTGATCCTT+TGG | + | chr6_4:21345110-21345129 | Msa0981780:intron | 40.0% | |
!!! | ATCCTTTGGTGATGTCGTTT+TGG | + | chr6_4:21345124-21345143 | Msa0981780:intron | 40.0% |
AACCAAAACGACATCACCAA+AGG | - | chr6_4:21345129-21345148 | None:intergenic | 40.0% | |
!!! | GTGATGTCGTTTTGGTTTGT+TGG | + | chr6_4:21345132-21345151 | Msa0981780:intron | 40.0% |
!!! | CGTTTTGGTTTGTTGGAACT+TGG | + | chr6_4:21345139-21345158 | Msa0981780:intron | 40.0% |
!! | TTGGTTTGTTGGAACTTGGA+AGG | + | chr6_4:21345143-21345162 | Msa0981780:intron | 40.0% |
GGAACTTGGAAGGATCATAT+AGG | + | chr6_4:21345153-21345172 | Msa0981780:intron | 40.0% | |
TTACCCTCAACCTCTTTCAT+CGG | + | chr6_4:21345400-21345419 | Msa0981780:intron | 40.0% | |
TTCATCCATGTCATGAAGTC+CGG | - | chr6_4:21345551-21345570 | None:intergenic | 40.0% | |
GCTTACTGCAAGTATGAGTT+GGG | - | chr6_4:21345584-21345603 | None:intergenic | 40.0% | |
TGCTTACTGCAAGTATGAGT+TGG | - | chr6_4:21345585-21345604 | None:intergenic | 40.0% | |
AGATAAGGTAGTAGACTGAC+TGG | - | chr6_4:21345774-21345793 | None:intergenic | 40.0% | |
TTAAACTATACACCACGCAC+TGG | - | chr6_4:21345818-21345837 | None:intergenic | 40.0% | |
GTTACTCATGTACTGAAGGA+AGG | + | chr6_4:21345953-21345972 | Msa0981780:CDS | 40.0% | |
TCCTGAAATCTTAATGGCGA+GGG | - | chr6_4:21346051-21346070 | None:intergenic | 40.0% | |
TTCCTGAAATCTTAATGGCG+AGG | - | chr6_4:21346052-21346071 | None:intergenic | 40.0% | |
!! | GTAGCATGCTTTTGTTTGGT+TGG | + | chr6_4:21346468-21346487 | Msa0981780:intron | 40.0% |
AGTAGTCGTAATTCCAGCAT+AGG | + | chr6_4:21346707-21346726 | Msa0981780:CDS | 40.0% | |
! | ACGAGGTGGTTTAAAATGGT+AGG | + | chr6_4:21347015-21347034 | Msa0981780:intron | 40.0% |
! | GGTGGTTTAAAATGGTAGGA+AGG | + | chr6_4:21347019-21347038 | Msa0981780:intron | 40.0% |
! | GGTTTAAAATGGTAGGAAGG+CGG | + | chr6_4:21347022-21347041 | Msa0981780:intron | 40.0% |
! | GTTTAAAATGGTAGGAAGGC+GGG | + | chr6_4:21347023-21347042 | Msa0981780:intron | 40.0% |
TTGGATTGAATCCTTCTGGA+GGG | - | chr6_4:21347119-21347138 | None:intergenic | 40.0% | |
TTTGGATTGAATCCTTCTGG+AGG | - | chr6_4:21347120-21347139 | None:intergenic | 40.0% | |
! | AGAAGCCGATGAAGATCTTT+TGG | - | chr6_4:21347138-21347157 | None:intergenic | 40.0% |
TTCAAAGTTGCATCCCTGAA+TGG | + | chr6_4:21347256-21347275 | Msa0981780:intron | 40.0% | |
GAGTTTGCAGATTGTGTTAG+TGG | + | chr6_4:21347454-21347473 | Msa0981780:intron | 40.0% | |
!! | ATATCCCATTTCTAGCTTGC+GGG | + | chr6_4:21347503-21347522 | Msa0981780:CDS | 40.0% |
!! | ACTCTAGAGCTCTCTTGTAA+GGG | - | chr6_4:21347627-21347646 | None:intergenic | 40.0% |
!! | AACTCTAGAGCTCTCTTGTA+AGG | - | chr6_4:21347628-21347647 | None:intergenic | 40.0% |
!!! | GGGAGAGATTTTCAAGTTCT+CGG | - | chr6_4:21347675-21347694 | None:intergenic | 40.0% |
AGAACTTGAAAATCTCTCCC+TGG | + | chr6_4:21347675-21347694 | Msa0981780:CDS | 40.0% | |
TATGCAAGATCAGGAATCCA+GGG | - | chr6_4:21347695-21347714 | None:intergenic | 40.0% | |
ATATGCAAGATCAGGAATCC+AGG | - | chr6_4:21347696-21347715 | None:intergenic | 40.0% | |
ATCAGTGGATATGCAAGATC+AGG | - | chr6_4:21347704-21347723 | None:intergenic | 40.0% | |
AAAGACTCGGAAGAAAGGAA+AGG | - | chr6_4:21347815-21347834 | None:intergenic | 40.0% | |
CAACAAAAGACTCGGAAGAA+AGG | - | chr6_4:21347820-21347839 | None:intergenic | 40.0% | |
!! | TCCGATTGAAGGTGTTATCC+AGG | + | chr6_4:21344502-21344521 | Msa0981780:CDS | 45.0% |
TAGTTATATCACCCTGCACC+TGG | - | chr6_4:21344523-21344542 | None:intergenic | 45.0% | |
! | AACCTTTTTCCACTAGGTCG+GGG | - | chr6_4:21344854-21344873 | None:intergenic | 45.0% |
AGTTACCGGACTTCATGACA+TGG | + | chr6_4:21345543-21345562 | Msa0981780:intron | 45.0% | |
ACTCATGTACTGAAGGAAGG+AGG | + | chr6_4:21345956-21345975 | Msa0981780:CDS | 45.0% | |
CTCATGTACTGAAGGAAGGA+GGG | + | chr6_4:21345957-21345976 | Msa0981780:CDS | 45.0% | |
CACAAGCCTTCTATACTGTC+AGG | + | chr6_4:21346012-21346031 | Msa0981780:CDS | 45.0% | |
CCTGAAATCTTAATGGCGAG+GGG | - | chr6_4:21346050-21346069 | None:intergenic | 45.0% | |
GCTTTGCAAAAGTCACCACA+GGG | - | chr6_4:21346682-21346701 | None:intergenic | 45.0% | |
TTAGTTGTTCACCCTTGCAG+AGG | + | chr6_4:21347068-21347087 | Msa0981780:intron | 45.0% | |
AACTGCAAATGCCTCTGCAA+GGG | - | chr6_4:21347082-21347101 | None:intergenic | 45.0% | |
AAACTGCAAATGCCTCTGCA+AGG | - | chr6_4:21347083-21347102 | None:intergenic | 45.0% | |
GAAAATTACTCCCCTCCAGA+AGG | + | chr6_4:21347105-21347124 | Msa0981780:CDS | 45.0% | |
! | TGGATTGAATCCTTCTGGAG+GGG | - | chr6_4:21347118-21347137 | None:intergenic | 45.0% |
!! | TCTTCATCGGCTTCTTGAGA+AGG | + | chr6_4:21347143-21347162 | Msa0981780:CDS | 45.0% |
AGAAGGTTGGAAGTCCATCA+GGG | + | chr6_4:21347160-21347179 | Msa0981780:CDS | 45.0% | |
TTGCAGATTGTGTTAGTGGG+TGG | + | chr6_4:21347458-21347477 | Msa0981780:intron | 45.0% | |
! | AGATTGTGTTAGTGGGTGGT+TGG | + | chr6_4:21347462-21347481 | Msa0981780:intron | 45.0% |
!! | TATCCCATTTCTAGCTTGCG+GGG | + | chr6_4:21347504-21347523 | Msa0981780:CDS | 45.0% |
TATCCACTGCCTAAAGTTGC+TGG | + | chr6_4:21347556-21347575 | Msa0981780:CDS | 45.0% | |
ATCCACTGCCTAAAGTTGCT+GGG | + | chr6_4:21347557-21347576 | Msa0981780:CDS | 45.0% | |
TATGTTCCCCCAGCAACTTT+AGG | - | chr6_4:21347568-21347587 | None:intergenic | 45.0% | |
! | TCTAGAGCTCTCTTGTAAGG+GGG | - | chr6_4:21347625-21347644 | None:intergenic | 45.0% |
!! | CTCTAGAGCTCTCTTGTAAG+GGG | - | chr6_4:21347626-21347645 | None:intergenic | 45.0% |
ACACCTTCAATCGGAGCCAT+TGG | - | chr6_4:21344497-21344516 | None:intergenic | 50.0% | |
!! | TGAAGGTGTTATCCAGGTGC+AGG | + | chr6_4:21344508-21344527 | Msa0981780:CDS | 50.0% |
!! | GAAGGTGTTATCCAGGTGCA+GGG | + | chr6_4:21344509-21344528 | Msa0981780:CDS | 50.0% |
TAATGCTCGGACTGCTGAAG+TGG | + | chr6_4:21344541-21344560 | Msa0981780:CDS | 50.0% | |
ACCATCGCACACAACAAGGT+CGG | - | chr6_4:21345285-21345304 | None:intergenic | 50.0% | |
GGTCCGATGAAAGAGGTTGA+GGG | - | chr6_4:21345406-21345425 | None:intergenic | 50.0% | |
TGGTCCGATGAAAGAGGTTG+AGG | - | chr6_4:21345407-21345426 | None:intergenic | 50.0% | |
CAACCTCTTTCATCGGACCA+AGG | + | chr6_4:21345407-21345426 | Msa0981780:intron | 50.0% | |
TCTCCTTGGTCCGATGAAAG+AGG | - | chr6_4:21345413-21345432 | None:intergenic | 50.0% | |
CCCCTCGCCATTAAGATTTC+AGG | + | chr6_4:21346047-21346066 | Msa0981780:intron | 50.0% | |
ACTCCTACAGGTGCACTTGT+TGG | - | chr6_4:21346413-21346432 | None:intergenic | 50.0% | |
GGCTTTGCAAAAGTCACCAC+AGG | - | chr6_4:21346683-21346702 | None:intergenic | 50.0% | |
! | GCAAGTGTTTGGAGGCACAA+GGG | - | chr6_4:21346945-21346964 | None:intergenic | 50.0% |
! | TGCAAGTGTTTGGAGGCACA+AGG | - | chr6_4:21346946-21346965 | None:intergenic | 50.0% |
!! | CATCGGCTTCTTGAGAAGGT+TGG | + | chr6_4:21347147-21347166 | Msa0981780:CDS | 50.0% |
GAGAAGGTTGGAAGTCCATC+AGG | + | chr6_4:21347159-21347178 | Msa0981780:CDS | 50.0% | |
GAAGGTTGGAAGTCCATCAG+GGG | + | chr6_4:21347161-21347180 | Msa0981780:CDS | 50.0% | |
CCTGTATCATCTACCCCTGA+TGG | - | chr6_4:21347177-21347196 | None:intergenic | 50.0% | |
CCATCAGGGGTAGATGATAC+AGG | + | chr6_4:21347174-21347193 | Msa0981780:CDS | 50.0% | |
! | TGTGTTAGTGGGTGGTTGGA+AGG | + | chr6_4:21347466-21347485 | Msa0981780:CDS | 50.0% |
GTGGTTGGAAGGCCCTAATA+AGG | + | chr6_4:21347477-21347496 | Msa0981780:CDS | 50.0% | |
TCCACTGCCTAAAGTTGCTG+GGG | + | chr6_4:21347558-21347577 | Msa0981780:CDS | 50.0% | |
TGGGGGAACATATCAGAGCT+TGG | + | chr6_4:21347576-21347595 | Msa0981780:CDS | 50.0% | |
TAGAGCTCTCTTGTAAGGGG+GGG | - | chr6_4:21347623-21347642 | None:intergenic | 50.0% | |
CTAGAGCTCTCTTGTAAGGG+GGG | - | chr6_4:21347624-21347643 | None:intergenic | 50.0% | |
CAGCCAATGGCTCCGATTGA+AGG | + | chr6_4:21344491-21344510 | Msa0981780:CDS | 55.0% | |
ATGTATCCACCCCGACCTAG+TGG | + | chr6_4:21344842-21344861 | Msa0981780:intron | 55.0% | |
! | CTTTTTCCACTAGGTCGGGG+TGG | - | chr6_4:21344851-21344870 | None:intergenic | 55.0% |
CACCCCGACCTAGTGGAAAA+AGG | + | chr6_4:21344849-21344868 | Msa0981780:intron | 55.0% | |
GAGCACCATCGCACACAACA+AGG | - | chr6_4:21345289-21345308 | None:intergenic | 55.0% | |
GCACCAACAAGTGCACCTGT+AGG | + | chr6_4:21346407-21346426 | Msa0981780:intron | 55.0% | |
GGTCCCCGCAAGCTAGAAAT+GGG | - | chr6_4:21347510-21347529 | None:intergenic | 55.0% | |
AGGTCCCCGCAAGCTAGAAA+TGG | - | chr6_4:21347511-21347530 | None:intergenic | 55.0% | |
CCACTGCCTAAAGTTGCTGG+GGG | + | chr6_4:21347559-21347578 | Msa0981780:CDS | 55.0% | |
GGGGCAATAGGAGGTTGTAC+TGG | - | chr6_4:21347604-21347623 | None:intergenic | 55.0% | |
TTGTAAGGGGGGGCAATAGG+AGG | - | chr6_4:21347613-21347632 | None:intergenic | 55.0% | |
CTCTTGTAAGGGGGGGCAAT+AGG | - | chr6_4:21347616-21347635 | None:intergenic | 55.0% | |
! | GCCGACCTTGTTGTGTGCGA+TGG | + | chr6_4:21345281-21345300 | Msa0981780:CDS | 60.0% |
GTGTGCGATGGTGCTCCTGA+TGG | + | chr6_4:21345293-21345312 | Msa0981780:CDS | 60.0% | |
AATGCGCACACACCAGTGCG+TGG | + | chr6_4:21345803-21345822 | Msa0981780:intron | 60.0% | |
! | CTAGCTTGCGGGGACCTTAC+TGG | + | chr6_4:21347514-21347533 | Msa0981780:CDS | 60.0% |
CCCCCAGCAACTTTAGGCAG+TGG | - | chr6_4:21347562-21347581 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_4 | gene | 21344443 | 21347981 | 21344443 | ID=Msa0981780;Name=Msa0981780 |
chr6_4 | mRNA | 21344443 | 21347981 | 21344443 | ID=Msa0981780-mRNA-1;Parent=Msa0981780;Name=Msa0981780-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.85|1|1|1|7|276|246 |
chr6_4 | exon | 21344443 | 21344562 | 21344443 | ID=Msa0981780-mRNA-1:exon:6544;Parent=Msa0981780-mRNA-1 |
chr6_4 | exon | 21345254 | 21345314 | 21345254 | ID=Msa0981780-mRNA-1:exon:6545;Parent=Msa0981780-mRNA-1 |
chr6_4 | exon | 21345545 | 21345597 | 21345545 | ID=Msa0981780-mRNA-1:exon:6546;Parent=Msa0981780-mRNA-1 |
chr6_4 | exon | 21345941 | 21346033 | 21345941 | ID=Msa0981780-mRNA-1:exon:6547;Parent=Msa0981780-mRNA-1 |
chr6_4 | exon | 21346665 | 21346728 | 21346665 | ID=Msa0981780-mRNA-1:exon:6548;Parent=Msa0981780-mRNA-1 |
chr6_4 | exon | 21347088 | 21347195 | 21347088 | ID=Msa0981780-mRNA-1:exon:6549;Parent=Msa0981780-mRNA-1 |
chr6_4 | exon | 21347464 | 21347981 | 21347464 | ID=Msa0981780-mRNA-1:exon:6550;Parent=Msa0981780-mRNA-1 |
chr6_4 | CDS | 21344443 | 21344562 | 21344443 | ID=Msa0981780-mRNA-1:cds;Parent=Msa0981780-mRNA-1 |
chr6_4 | CDS | 21345254 | 21345314 | 21345254 | ID=Msa0981780-mRNA-1:cds;Parent=Msa0981780-mRNA-1 |
chr6_4 | CDS | 21345545 | 21345597 | 21345545 | ID=Msa0981780-mRNA-1:cds;Parent=Msa0981780-mRNA-1 |
chr6_4 | CDS | 21345941 | 21346033 | 21345941 | ID=Msa0981780-mRNA-1:cds;Parent=Msa0981780-mRNA-1 |
chr6_4 | CDS | 21346665 | 21346728 | 21346665 | ID=Msa0981780-mRNA-1:cds;Parent=Msa0981780-mRNA-1 |
chr6_4 | CDS | 21347088 | 21347195 | 21347088 | ID=Msa0981780-mRNA-1:cds;Parent=Msa0981780-mRNA-1 |
chr6_4 | CDS | 21347464 | 21347705 | 21347464 | ID=Msa0981780-mRNA-1:cds;Parent=Msa0981780-mRNA-1 |
chr6_4 | three_prime_UTR | 21347706 | 21347981 | 21347706 | ID=Msa0981780-mRNA-1:three_prime_utr;Parent=Msa0981780-mRNA-1 |
Gene Sequence |
Protein sequence |