Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0272520 | XP_003593568.1 | 99.051 | 316 | 3 | 0 | 1 | 316 | 1 | 316 | 0.0 | 642 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0272520 | sp|Q9UET6|TRM7_HUMAN | 59.000 | 300 | 105 | 2 | 1 | 300 | 1 | 282 | 1.81e-116 | 342 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0192070 | Msa0272520 | 0.862994 | 3.416188e-64 | -8.615850e-47 |
| Msa0272520 | Msa0312730 | 0.861924 | 7.284642e-64 | -8.615850e-47 |
| Msa0272520 | Msa0981780 | 0.971358 | 4.874902e-133 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0272520 | MtrunA17_Chr2g0282131 | 99.051 | 316 | 3 | 0 | 1 | 316 | 1 | 316 | 0.0 | 642 |
| Msa0272520 | MtrunA17_Chr4g0040381 | 33.473 | 239 | 137 | 7 | 1 | 230 | 1 | 226 | 7.94e-35 | 134 |
| Msa0272520 | MtrunA17_Chr4g0035141 | 33.333 | 225 | 131 | 6 | 12 | 230 | 15 | 226 | 1.58e-32 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0272520 | AT5G01230.1 | 92.508 | 307 | 22 | 1 | 1 | 306 | 1 | 307 | 0.0 | 586 |
| Msa0272520 | AT5G01230.2 | 100.000 | 57 | 0 | 0 | 1 | 57 | 1 | 57 | 5.69e-35 | 122 |
| Msa0272520 | AT4G25730.1 | 34.167 | 240 | 134 | 8 | 1 | 231 | 1 | 225 | 2.25e-34 | 133 |
Find 114 sgRNAs with CRISPR-Local
Find 360 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGCAGTGATAATATTTA+TGG | 0.099808 | 2_3:-4056432 | Msa0272520:three_prime_UTR |
| CACTGATTCGTAGTGTTATT+TGG | 0.132341 | 2_3:-4056468 | Msa0272520:three_prime_UTR |
| AATGGGATATACACCTTATT+AGG | 0.161234 | 2_3:+4056695 | None:intergenic |
| TGTGATTCTGTGAAATTTAT+TGG | 0.186756 | 2_3:-4061794 | Msa0272520:five_prime_UTR |
| ATCGGAAAAGTTTATAAGTT+TGG | 0.192523 | 2_3:+4056306 | None:intergenic |
| AGGAATAATTTGTATTCATT+TGG | 0.244032 | 2_3:+4056343 | None:intergenic |
| TTTATTGGATAGTTTGATTC+AGG | 0.251838 | 2_3:-4061779 | Msa0272520:five_prime_UTR |
| AGAAGCCGATGAAGATCTTT+TGG | 0.261957 | 2_3:+4057050 | None:intergenic |
| CTAGCTTGCGGGGACCTTAC+TGG | 0.280561 | 2_3:-4056671 | Msa0272520:CDS |
| TCGGAAAAGTTTATAAGTTT+GGG | 0.305571 | 2_3:+4056307 | None:intergenic |
| GTTTGGGTTATGATTATCTA+AGG | 0.309017 | 2_3:+4056323 | None:intergenic |
| TTCATTGCGAAGATATTTAG+AGG | 0.318467 | 2_3:-4058202 | Msa0272520:CDS |
| ATATCCCATTTCTAGCTTGC+GGG | 0.337528 | 2_3:-4056682 | Msa0272520:CDS |
| GGAATAATTTGTATTCATTT+GGG | 0.341056 | 2_3:+4056344 | None:intergenic |
| ATTTAATTTGCATCATAAAC+CGG | 0.346350 | 2_3:+4061956 | None:intergenic |
| AACTCTAGAGCTCTCTTGTA+AGG | 0.363418 | 2_3:+4056560 | None:intergenic |
| TGCTCCAGGCAGCTGGAGTC+AGG | 0.367296 | 2_3:-4061160 | Msa0272520:intron |
| GCATCAGGTGCAAGCTTGGC+TGG | 0.374216 | 2_3:+4060197 | None:intergenic |
| GCAAAGCTTCAAGGGATAAG+AGG | 0.379131 | 2_3:-4061600 | Msa0272520:CDS |
| CTTTGCATCAGGTGCAAGCT+TGG | 0.398733 | 2_3:+4060193 | None:intergenic |
| TATCCACTGCCTAAAGTTGC+TGG | 0.400318 | 2_3:-4056629 | Msa0272520:CDS |
| CAAATACCTGACAGTATAGA+AGG | 0.404894 | 2_3:+4058167 | None:intergenic |
| AGGTCCCCGCAAGCTAGAAA+TGG | 0.414251 | 2_3:+4056677 | None:intergenic |
| GAGAAGGTTGGAAGTCCATC+AGG | 0.420443 | 2_3:-4057026 | Msa0272520:CDS |
| ACTAAAGTTCTTACCTATGC+TGG | 0.426966 | 2_3:+4057465 | None:intergenic |
| CAGCCAATGGCTCCGATTGA+AGG | 0.431915 | 2_3:-4059694 | Msa0272520:CDS |
| ATGGGATATACACCTTATTA+GGG | 0.432233 | 2_3:+4056696 | None:intergenic |
| ATAGTTTGATTCAGGAGAAA+AGG | 0.443837 | 2_3:-4061771 | Msa0272520:intron |
| TGGAAAACTTACTTTGCATC+AGG | 0.444078 | 2_3:+4060182 | None:intergenic |
| AAATCAATAGCTACAATAAG+AGG | 0.445424 | 2_3:+4059718 | None:intergenic |
| TATGTGCTGCTCCAGGCAGC+TGG | 0.452462 | 2_3:-4061167 | Msa0272520:CDS |
| TGCTTACTGCAAGTATGAGT+TGG | 0.458021 | 2_3:+4058603 | None:intergenic |
| AAACCATGGGCAAAGCTTCA+AGG | 0.459913 | 2_3:-4061609 | Msa0272520:exon |
| GAGTTTGCAGATTGTGTTAG+TGG | 0.463559 | 2_3:-4056731 | Msa0272520:intron |
| CATCGGCTTCTTGAGAAGGT+TGG | 0.470461 | 2_3:-4057038 | Msa0272520:CDS |
| CAACAAAAGACTCGGAAGAA+AGG | 0.471356 | 2_3:+4056368 | None:intergenic |
| TTCATCCATGTCATGAAGTC+CGG | 0.472049 | 2_3:+4058637 | None:intergenic |
| ATCAGTGGATATGCAAGATC+AGG | 0.472705 | 2_3:+4056484 | None:intergenic |
| TTACTGGATATGATTCTGAT+AGG | 0.474435 | 2_3:-4056655 | Msa0272520:CDS |
| ATCCCTTGAAGCTTTGCCCA+TGG | 0.475121 | 2_3:+4061606 | None:intergenic |
| GCTTACTGCAAGTATGAGTT+GGG | 0.475427 | 2_3:+4058604 | None:intergenic |
| TGAAGGTGTTATCCAGGTGC+AGG | 0.479392 | 2_3:-4059677 | Msa0272520:CDS |
| GGCTTTGCAAAAGTCACCAC+AGG | 0.483167 | 2_3:+4057505 | None:intergenic |
| ATCCACTGCCTAAAGTTGCT+GGG | 0.488195 | 2_3:-4056628 | Msa0272520:CDS |
| CCATCAGGGGTAGATGATAC+AGG | 0.496409 | 2_3:-4057011 | Msa0272520:intron |
| AGCTATTGATTTGCAGCCAA+TGG | 0.497084 | 2_3:-4059707 | Msa0272520:CDS |
| TATATCCCATTTCTAGCTTG+CGG | 0.497714 | 2_3:-4056683 | Msa0272520:CDS |
| TCTTCATCGGCTTCTTGAGA+AGG | 0.501095 | 2_3:-4057042 | Msa0272520:CDS |
| AGTACCTGACTCCAGCTGCC+TGG | 0.508337 | 2_3:+4061156 | None:intergenic |
| ACACCTTCAATCGGAGCCAT+TGG | 0.510050 | 2_3:+4059691 | None:intergenic |
| TTGGATTGAATCCTTCTGGA+GGG | 0.511479 | 2_3:+4057069 | None:intergenic |
| GGGGCAATAGGAGGTTGTAC+TGG | 0.511552 | 2_3:+4056584 | None:intergenic |
| GTGGTTGGAAGGCCCTAATA+AGG | 0.511729 | 2_3:-4056708 | Msa0272520:CDS |
| GGTCCCCGCAAGCTAGAAAT+GGG | 0.513086 | 2_3:+4056678 | None:intergenic |
| TCCGATTGAAGGTGTTATCC+AGG | 0.517786 | 2_3:-4059683 | Msa0272520:CDS |
| TAGTTATATCACCCTGCACC+TGG | 0.518978 | 2_3:+4059665 | None:intergenic |
| CACAAGCCTTCTATACTGTC+AGG | 0.519250 | 2_3:-4058173 | Msa0272520:intron |
| TATCAGAATCATATCCAGTA+AGG | 0.519570 | 2_3:+4056657 | None:intergenic |
| ATTGAAGAAGCCATGAACTT+AGG | 0.519813 | 2_3:+4061901 | None:intergenic |
| ATATGCAAGATCAGGAATCC+AGG | 0.523232 | 2_3:+4056492 | None:intergenic |
| CAGGTGCAAGCTTGGCTGGA+AGG | 0.527605 | 2_3:+4060201 | None:intergenic |
| ACTCTAGAGCTCTCTTGTAA+GGG | 0.527637 | 2_3:+4056561 | None:intergenic |
| TGCGAAGATATTTAGAGGAA+AGG | 0.528045 | 2_3:-4058197 | Msa0272520:CDS |
| TCAATCCAAAAGATCTTCAT+CGG | 0.528148 | 2_3:-4057055 | Msa0272520:CDS |
| GTAGATTTATGTGCTGCTCC+AGG | 0.528472 | 2_3:-4061174 | Msa0272520:CDS |
| TGTGTTAGTGGGTGGTTGGA+AGG | 0.530748 | 2_3:-4056719 | Msa0272520:CDS |
| ACCTGGATAACACCTTCAAT+CGG | 0.534040 | 2_3:+4059682 | None:intergenic |
| TGGATTGAATCCTTCTGGAG+GGG | 0.538206 | 2_3:+4057070 | None:intergenic |
| TACCGAAAAGCGAAAGAAGA+AGG | 0.538413 | 2_3:-4061479 | Msa0272520:CDS |
| GCCGACCTTGTTGTGTGCGA+TGG | 0.542550 | 2_3:-4058904 | Msa0272520:CDS |
| AACCATGGGCAAAGCTTCAA+GGG | 0.544253 | 2_3:-4061608 | Msa0272520:exon |
| TTTAATTTGCATCATAAACC+GGG | 0.550013 | 2_3:+4061957 | None:intergenic |
| AGTTTGCAGATTGTGTTAGT+GGG | 0.550426 | 2_3:-4056730 | Msa0272520:intron |
| CCTGTATCATCTACCCCTGA+TGG | 0.551247 | 2_3:+4057011 | None:intergenic |
| AGATTGTGTTAGTGGGTGGT+TGG | 0.553179 | 2_3:-4056723 | Msa0272520:CDS |
| AGTAGTCGTAATTCCAGCAT+AGG | 0.557095 | 2_3:-4057478 | Msa0272520:intron |
| TCCACTGCCTAAAGTTGCTG+GGG | 0.574703 | 2_3:-4056627 | Msa0272520:CDS |
| GAAAATTACTCCCCTCCAGA+AGG | 0.574957 | 2_3:-4057080 | Msa0272520:CDS |
| TTGCAGATTGTGTTAGTGGG+TGG | 0.575776 | 2_3:-4056727 | Msa0272520:intron |
| CTCTAGAGCTCTCTTGTAAG+GGG | 0.577035 | 2_3:+4056562 | None:intergenic |
| GAAAAGCGAAAGAAGAAGGT+TGG | 0.578774 | 2_3:-4061475 | Msa0272520:CDS |
| CAAAGCTTCAAGGGATAAGA+GGG | 0.579751 | 2_3:-4061599 | Msa0272520:intron |
| CTCATGTACTGAAGGAAGGA+GGG | 0.582274 | 2_3:-4058228 | Msa0272520:CDS |
| AGAACTTGAAAATCTCTCCC+TGG | 0.583460 | 2_3:-4056510 | Msa0272520:CDS |
| GTGTGCGATGGTGCTCCTGA+TGG | 0.586485 | 2_3:-4058892 | Msa0272520:intron |
| TATCCCATTTCTAGCTTGCG+GGG | 0.586932 | 2_3:-4056681 | Msa0272520:CDS |
| TAATGCTCGGACTGCTGAAG+TGG | 0.587470 | 2_3:-4059644 | Msa0272520:intron |
| GTTTCTTAGGCAAGTAAGTG+AGG | 0.591445 | 2_3:-4061635 | Msa0272520:intron |
| AATTGTTACTCATGTACTGA+AGG | 0.593299 | 2_3:-4058236 | Msa0272520:CDS |
| GTTACTCATGTACTGAAGGA+AGG | 0.596222 | 2_3:-4058232 | Msa0272520:CDS |
| TTTGGATTGAATCCTTCTGG+AGG | 0.598385 | 2_3:+4057068 | None:intergenic |
| GAAGAAGCCATGAACTTAGG+AGG | 0.598700 | 2_3:+4061904 | None:intergenic |
| CTAGAGCTCTCTTGTAAGGG+GGG | 0.605069 | 2_3:+4056564 | None:intergenic |
| ATTTGGGACAACAAAAGACT+CGG | 0.605473 | 2_3:+4056360 | None:intergenic |
| AGAAGGTTGGAAGTCCATCA+GGG | 0.611108 | 2_3:-4057025 | Msa0272520:CDS |
| CAAATAACACTACGAATCAG+TGG | 0.612508 | 2_3:+4056469 | None:intergenic |
| ACTCATGTACTGAAGGAAGG+AGG | 0.615741 | 2_3:-4058229 | Msa0272520:CDS |
| ACATTATCAACATTATCCAT+CGG | 0.623898 | 2_3:+4056288 | None:intergenic |
| ACCATCGCACACAACAAGGT+CGG | 0.624891 | 2_3:+4058903 | None:intergenic |
| AGTAAGTGAGGAATAAACCA+TGG | 0.627845 | 2_3:-4061623 | Msa0272520:exon |
| TATGCAAGATCAGGAATCCA+GGG | 0.628400 | 2_3:+4056493 | None:intergenic |
| GAGCACCATCGCACACAACA+AGG | 0.633636 | 2_3:+4058899 | None:intergenic |
| TCTAGAGCTCTCTTGTAAGG+GGG | 0.635566 | 2_3:+4056563 | None:intergenic |
| ATAATATGAGTAAAATTGTG+AGG | 0.639750 | 2_3:-4056223 | None:intergenic |
| GAAGGTGTTATCCAGGTGCA+GGG | 0.645167 | 2_3:-4059676 | Msa0272520:CDS |
| AGGGTGATATAACTAATGCT+CGG | 0.647655 | 2_3:-4059657 | Msa0272520:CDS |
| GTAAGTGAGGAATAAACCAT+GGG | 0.651712 | 2_3:-4061622 | Msa0272520:exon |
| AAAGACTCGGAAGAAAGGAA+AGG | 0.655032 | 2_3:+4056373 | None:intergenic |
| GCTTTGCAAAAGTCACCACA+GGG | 0.664958 | 2_3:+4057506 | None:intergenic |
| TAGAGCTCTCTTGTAAGGGG+GGG | 0.669752 | 2_3:+4056565 | None:intergenic |
| CCACTGCCTAAAGTTGCTGG+GGG | 0.698850 | 2_3:-4056626 | Msa0272520:CDS |
| AGAATCTCGTACAGTGTACG+AGG | 0.708517 | 2_3:+4061876 | None:intergenic |
| AGTTACCGGACTTCATGACA+TGG | 0.714363 | 2_3:-4058642 | Msa0272520:CDS |
| GAAGGTTGGAAGTCCATCAG+GGG | 0.734678 | 2_3:-4057024 | Msa0272520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATAAATGAAAACTTT+GGG | + | chr2_3:4057588-4057607 | None:intergenic | 10.0% |
| !!! | TTTTATATAAATGAAAACTT+TGG | + | chr2_3:4057589-4057608 | None:intergenic | 10.0% |
| !!! | TAAATTTTTAAAGTATTATC+CGG | + | chr2_3:4057934-4057953 | None:intergenic | 10.0% |
| !!! | GTTCTTTTTTTTTTTTTTGT+TGG | - | chr2_3:4056630-4056649 | Msa0272520:CDS | 15.0% |
| !!! | TTTTTTTTTTGTTGGTTTTT+TGG | - | chr2_3:4056638-4056657 | Msa0272520:CDS | 15.0% |
| !!! | TTTTTTTTTGTTGGTTTTTT+GGG | - | chr2_3:4056639-4056658 | Msa0272520:CDS | 15.0% |
| !! | AATTACATTTAAATGATACT+AGG | + | chr2_3:4057192-4057211 | None:intergenic | 15.0% |
| !!! | CTTAAAGTGAATTATATTTT+AGG | + | chr2_3:4057435-4057454 | None:intergenic | 15.0% |
| !! | CTAAAATATAATTCACTTTA+AGG | - | chr2_3:4057433-4057452 | Msa0272520:intron | 15.0% |
| !! | TTATATAAATGAAAACTTTG+GGG | + | chr2_3:4057587-4057606 | None:intergenic | 15.0% |
| !!! | TACTTTAAAAATTTATATGC+AGG | - | chr2_3:4057939-4057958 | Msa0272520:intron | 15.0% |
| !! | GAAAAAAGAAAAAGAAATTA+AGG | + | chr2_3:4058934-4058953 | None:intergenic | 15.0% |
| !! | AAAAAAAATAGTAACAAACA+AGG | + | chr2_3:4060745-4060764 | None:intergenic | 15.0% |
| !! | TATTAGATTTGAATCTTTAA+CGG | - | chr2_3:4060965-4060984 | Msa0272520:intron | 15.0% |
| !!! | ATTTAATTTGCATCATAAAC+CGG | + | chr2_3:4056229-4056248 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGTTGGTTTTTTG+GGG | - | chr2_3:4056640-4056659 | Msa0272520:CDS | 20.0% |
| !!! | GAAGAATTTAACATTTTTGA+AGG | - | chr2_3:4056766-4056785 | Msa0272520:intron | 20.0% |
| !! | ATAATTAAAATCAGCTTTCA+AGG | + | chr2_3:4056805-4056824 | None:intergenic | 20.0% |
| !! | CTATCTCTAATTATATATTC+AGG | + | chr2_3:4056885-4056904 | None:intergenic | 20.0% |
| !! | ATTCTTAAGATAAGTTTAAG+AGG | + | chr2_3:4057330-4057349 | None:intergenic | 20.0% |
| !!! | AATATAATTCACTTTAAGGA+AGG | - | chr2_3:4057437-4057456 | Msa0272520:intron | 20.0% |
| !! | TATATAAATGAAAACTTTGG+GGG | + | chr2_3:4057586-4057605 | None:intergenic | 20.0% |
| !! | TAAAAAAGATAACACCATTA+CGG | - | chr2_3:4057768-4057787 | Msa0272520:intron | 20.0% |
| !!! | AAAAGGATACTATAGTTTTA+AGG | + | chr2_3:4058113-4058132 | None:intergenic | 20.0% |
| !! | CAATAAATTCAAAAGAAAAC+AGG | + | chr2_3:4058278-4058297 | None:intergenic | 20.0% |
| !! | TTAATGTATTAGAATTGACA+TGG | + | chr2_3:4059458-4059477 | None:intergenic | 20.0% |
| !! | TTGGTTGTAGTTTAAAAATT+TGG | - | chr2_3:4059504-4059523 | Msa0272520:intron | 20.0% |
| !!! | TGTAACTATTTATCTCTTTT+AGG | - | chr2_3:4059626-4059645 | Msa0272520:intron | 20.0% |
| !!! | TGATAGTTGATATTTCATTA+TGG | - | chr2_3:4059666-4059685 | Msa0272520:CDS | 20.0% |
| !!! | GGTGTATAGTTTAATTTAAA+CGG | - | chr2_3:4059821-4059840 | Msa0272520:intron | 20.0% |
| !! | AGTTATAAAAGCTAACTAAA+AGG | + | chr2_3:4060138-4060157 | None:intergenic | 20.0% |
| !!! | TCATTTCTGGAAATAAATTA+TGG | - | chr2_3:4060176-4060195 | Msa0272520:intron | 20.0% |
| !!! | GACAAAATAATTGACTTTAA+AGG | - | chr2_3:4060344-4060363 | Msa0272520:intron | 20.0% |
| !! | TGCTAAATAACTCATAATAA+AGG | - | chr2_3:4060561-4060580 | Msa0272520:intron | 20.0% |
| !! | GCTAAATAACTCATAATAAA+GGG | - | chr2_3:4060562-4060581 | Msa0272520:intron | 20.0% |
| !! | CTAAATAACTCATAATAAAG+GGG | - | chr2_3:4060563-4060582 | Msa0272520:intron | 20.0% |
| !!! | GTATATGGAATTATGATTTT+TGG | + | chr2_3:4060621-4060640 | None:intergenic | 20.0% |
| !! | AGTTTCTTTATGAATTGTTA+TGG | - | chr2_3:4060795-4060814 | Msa0272520:intron | 20.0% |
| !!! | TCATGTATACTTAATTTTCA+TGG | - | chr2_3:4061401-4061420 | Msa0272520:intron | 20.0% |
| !!! | GGAATAATTTGTATTCATTT+GGG | + | chr2_3:4061841-4061860 | None:intergenic | 20.0% |
| !!! | AGGAATAATTTGTATTCATT+TGG | + | chr2_3:4061842-4061861 | None:intergenic | 20.0% |
| ! | TGTGATTCTGTGAAATTTAT+TGG | - | chr2_3:4056388-4056407 | Msa0272520:three_prime_UTR | 25.0% |
| ! | TTTATTGGATAGTTTGATTC+AGG | - | chr2_3:4056403-4056422 | Msa0272520:three_prime_UTR | 25.0% |
| !!! | GTTGTATGTTTTTGTTTCTT+AGG | - | chr2_3:4056534-4056553 | Msa0272520:CDS | 25.0% |
| ! | TGATTTGATGTTAGCTAAAT+TGG | - | chr2_3:4056664-4056683 | Msa0272520:CDS | 25.0% |
| ! | ATTACTATCTCTGCTAAAAA+TGG | + | chr2_3:4056853-4056872 | None:intergenic | 25.0% |
| ! | TGAAACTATAAGTAATACAG+TGG | + | chr2_3:4056955-4056974 | None:intergenic | 25.0% |
| ! | TGTAATTGACATGAATATCT+TGG | - | chr2_3:4057205-4057224 | Msa0272520:intron | 25.0% |
| ! | TAAGATAAGTTTAAGAGGAA+GGG | + | chr2_3:4057325-4057344 | None:intergenic | 25.0% |
| ! | TTAAGATAAGTTTAAGAGGA+AGG | + | chr2_3:4057326-4057345 | None:intergenic | 25.0% |
| !! | AACAGCAAATGATTTTTGAT+GGG | + | chr2_3:4057744-4057763 | None:intergenic | 25.0% |
| !! | AAACAGCAAATGATTTTTGA+TGG | + | chr2_3:4057745-4057764 | None:intergenic | 25.0% |
| ! | TATTGCCATGTATATACAAT+AGG | - | chr2_3:4057854-4057873 | Msa0272520:intron | 25.0% |
| ! | ATTGCCATGTATATACAATA+GGG | - | chr2_3:4057855-4057874 | Msa0272520:intron | 25.0% |
| !! | ACTATAGTATCCTTTTATGT+TGG | - | chr2_3:4058117-4058136 | Msa0272520:intron | 25.0% |
| ! | ATAATTACGACCAACATAAA+AGG | + | chr2_3:4058130-4058149 | None:intergenic | 25.0% |
| ! | AAACAATGTTTAAAAGGATG+AGG | + | chr2_3:4058251-4058270 | None:intergenic | 25.0% |
| ! | GGAAGAAAACAATGTTTAAA+AGG | + | chr2_3:4058257-4058276 | None:intergenic | 25.0% |
| ! | TGCTGTATTATCTTATGTTA+AGG | - | chr2_3:4058334-4058353 | Msa0272520:intron | 25.0% |
| ! | AAATCAATAGCTACAATAAG+AGG | + | chr2_3:4058467-4058486 | None:intergenic | 25.0% |
| !!! | TGTTTCTGCTCTAAAATTTA+TGG | - | chr2_3:4058790-4058809 | Msa0272520:intron | 25.0% |
| ! | AGTGAAATAATGAAAAGACA+TGG | - | chr2_3:4058999-4059018 | Msa0272520:intron | 25.0% |
| ! | ATACATTAACTCTGATATGT+AGG | - | chr2_3:4059469-4059488 | Msa0272520:intron | 25.0% |
| !! | ATTTCATTATGGTTACCTTT+TGG | - | chr2_3:4059677-4059696 | Msa0272520:CDS | 25.0% |
| ! | AACAAGCATATGTCTATTAA+AGG | + | chr2_3:4059744-4059763 | None:intergenic | 25.0% |
| ! | CGCATTTATTAGATTAGATA+AGG | + | chr2_3:4059786-4059805 | None:intergenic | 25.0% |
| ! | TATAAAAGCTAACTAAAAGG+TGG | + | chr2_3:4060135-4060154 | None:intergenic | 25.0% |
| !! | ATTACTTCCATTGTTTTCAA+AGG | + | chr2_3:4060227-4060246 | None:intergenic | 25.0% |
| !!! | CAATTATTTTGTCAACCAAT+TGG | + | chr2_3:4060337-4060356 | None:intergenic | 25.0% |
| !!! | AGTTATATTTTAACTCCTAC+AGG | + | chr2_3:4060422-4060441 | None:intergenic | 25.0% |
| ! | ATTTAGATATGATCATGAGT+AGG | + | chr2_3:4060500-4060519 | None:intergenic | 25.0% |
| ! | ACAAAAAGCAACTTAGTATA+TGG | + | chr2_3:4060636-4060655 | None:intergenic | 25.0% |
| !! | ATTTTCCATAGCTTAGTAAT+TGG | - | chr2_3:4060822-4060841 | Msa0272520:intron | 25.0% |
| ! | ATCTAATAATTGCAAGTGTT+TGG | + | chr2_3:4060953-4060972 | None:intergenic | 25.0% |
| ! | TGATTAACAATCTACATGTA+GGG | + | chr2_3:4061305-4061324 | None:intergenic | 25.0% |
| ! | ATGATTAACAATCTACATGT+AGG | + | chr2_3:4061306-4061325 | None:intergenic | 25.0% |
| !!! | TTAAAAAAAGCATCAACTCA+AGG | - | chr2_3:4061643-4061662 | Msa0272520:intron | 25.0% |
| ! | TCTTGCAGTGATAATATTTA+TGG | - | chr2_3:4061750-4061769 | Msa0272520:intron | 25.0% |
| ! | TCGGAAAAGTTTATAAGTTT+GGG | + | chr2_3:4061878-4061897 | None:intergenic | 25.0% |
| ! | ATCGGAAAAGTTTATAAGTT+TGG | + | chr2_3:4061879-4061898 | None:intergenic | 25.0% |
| !! | AAACTTATAAACTTTTCCGA+TGG | - | chr2_3:4061878-4061897 | Msa0272520:five_prime_UTR | 25.0% |
| ! | ACATTATCAACATTATCCAT+CGG | + | chr2_3:4061897-4061916 | None:intergenic | 25.0% |
| TAGAACACAAAAACGAATAC+AGG | + | chr2_3:4056362-4056381 | None:intergenic | 30.0% | |
| ATAGTTTGATTCAGGAGAAA+AGG | - | chr2_3:4056411-4056430 | Msa0272520:three_prime_UTR | 30.0% | |
| AATGTCTCAGAAATAGTGAA+AGG | - | chr2_3:4056910-4056929 | Msa0272520:intron | 30.0% | |
| !!! | TCAATTTCGTTCTTTTTTGC+AGG | - | chr2_3:4056972-4056991 | Msa0272520:intron | 30.0% |
| !!! | CAATTTCGTTCTTTTTTGCA+GGG | - | chr2_3:4056973-4056992 | Msa0272520:intron | 30.0% |
| !!! | AATTTCGTTCTTTTTTGCAG+GGG | - | chr2_3:4056974-4056993 | Msa0272520:intron | 30.0% |
| CAATTACCAAACACAAACTA+TGG | - | chr2_3:4057108-4057127 | Msa0272520:intron | 30.0% | |
| ATCTTGGTTTAGATTTCTTC+TGG | - | chr2_3:4057221-4057240 | Msa0272520:intron | 30.0% | |
| AAGATAAGTTTAAGAGGAAG+GGG | + | chr2_3:4057324-4057343 | None:intergenic | 30.0% | |
| TAACTGATATCACAACACAA+AGG | + | chr2_3:4057369-4057388 | None:intergenic | 30.0% | |
| GGATTTGAATTTAAACCTAG+AGG | - | chr2_3:4057458-4057477 | Msa0272520:intron | 30.0% | |
| ! | AAACAATGATAATGACCTCT+AGG | + | chr2_3:4057476-4057495 | None:intergenic | 30.0% |
| !! | GACTATTTCTAAGAAACAAG+TGG | + | chr2_3:4057689-4057708 | None:intergenic | 30.0% |
| ATGAAAACCAAATCAGACTT+AGG | - | chr2_3:4057791-4057810 | Msa0272520:intron | 30.0% | |
| ATTCATACCTAAGTCTGATT+TGG | + | chr2_3:4057801-4057820 | None:intergenic | 30.0% | |
| TTGCCATGTATATACAATAG+GGG | - | chr2_3:4057856-4057875 | Msa0272520:intron | 30.0% | |
| AACAAAGCATATAATCTCCA+TGG | + | chr2_3:4058023-4058042 | None:intergenic | 30.0% | |
| ATGTCAATGAATGCATTTAC+AGG | + | chr2_3:4058073-4058092 | None:intergenic | 30.0% | |
| GTAAATGCATTCATTGACAT+AGG | - | chr2_3:4058073-4058092 | Msa0272520:intron | 30.0% | |
| ! | GTGATAATTAACAGAGTGTT+TGG | + | chr2_3:4058375-4058394 | None:intergenic | 30.0% |
| TCTAATTCTAATGACAAGAG+TGG | + | chr2_3:4058643-4058662 | None:intergenic | 30.0% | |
| ! | AACAAAAACCTTTTTCCACT+AGG | + | chr2_3:4058857-4058876 | None:intergenic | 30.0% |
| CAAAAGAAAGCAGAAATATG+TGG | + | chr2_3:4058906-4058925 | None:intergenic | 30.0% | |
| ATGAACTGAACAAAAGCAAT+TGG | + | chr2_3:4058956-4058975 | None:intergenic | 30.0% | |
| AATAATGAAAAGACATGGTG+TGG | - | chr2_3:4059004-4059023 | Msa0272520:intron | 30.0% | |
| GTCAAACTATACACATGAAT+TGG | + | chr2_3:4059068-4059087 | None:intergenic | 30.0% | |
| !!! | ATATAGGTCTTGCTTTTTTG+AGG | - | chr2_3:4059166-4059185 | Msa0272520:intron | 30.0% |
| ! | TATGCATTTTCTTTACCATC+AGG | + | chr2_3:4059308-4059327 | None:intergenic | 30.0% |
| TCAAATCATTTGTAGCTGTT+TGG | + | chr2_3:4059366-4059385 | None:intergenic | 30.0% | |
| AGGGATAAATTTATTCTCGT+TGG | + | chr2_3:4059424-4059443 | None:intergenic | 30.0% | |
| !! | ATGTAGGCTTTTTCTCATTT+TGG | - | chr2_3:4059485-4059504 | Msa0272520:intron | 30.0% |
| CTAATTACTTACTTCTTGCA+GGG | - | chr2_3:4059917-4059936 | Msa0272520:intron | 30.0% | |
| TAATTACTTACTTCTTGCAG+GGG | - | chr2_3:4059918-4059937 | Msa0272520:intron | 30.0% | |
| AATTGTTACTCATGTACTGA+AGG | - | chr2_3:4059946-4059965 | Msa0272520:intron | 30.0% | |
| TTCATTGCGAAGATATTTAG+AGG | - | chr2_3:4059980-4059999 | Msa0272520:intron | 30.0% | |
| TCCAATTCCTGAAATCTTAA+TGG | + | chr2_3:4060054-4060073 | None:intergenic | 30.0% | |
| !! | TGCTATTTCAAACAATGTGT+AGG | + | chr2_3:4060079-4060098 | None:intergenic | 30.0% |
| AATAAAGTGACACTCATTTC+TGG | - | chr2_3:4060163-4060182 | Msa0272520:intron | 30.0% | |
| ! | TTCCAAACCTTTGAAAACAA+TGG | - | chr2_3:4060217-4060236 | Msa0272520:CDS | 30.0% |
| ! | TTCCATTGTTTTCAAAGGTT+TGG | + | chr2_3:4060222-4060241 | None:intergenic | 30.0% |
| ! | TCCAGAGTTTTACCAAAATT+CGG | - | chr2_3:4060296-4060315 | Msa0272520:intron | 30.0% |
| !!! | ATTGTTTCTGTTCCGAATTT+TGG | + | chr2_3:4060311-4060330 | None:intergenic | 30.0% |
| GTTGTATTTATCAAGAGAGT+AGG | + | chr2_3:4060380-4060399 | None:intergenic | 30.0% | |
| ACTCATAATAAAGGGGAAAA+TGG | - | chr2_3:4060570-4060589 | Msa0272520:intron | 30.0% | |
| AATAAAGGGGAAAATGGTAA+AGG | - | chr2_3:4060576-4060595 | Msa0272520:intron | 30.0% | |
| AACTACCAATTACTAAGCTA+TGG | + | chr2_3:4060830-4060849 | None:intergenic | 30.0% | |
| AAACAGCTAAATTCAACTAG+TGG | + | chr2_3:4060919-4060938 | None:intergenic | 30.0% | |
| TAATAATTGCAAGTGTTTGG+AGG | + | chr2_3:4060950-4060969 | None:intergenic | 30.0% | |
| ! | TAGTTATGAATCTTTTGACG+AGG | - | chr2_3:4060995-4061014 | Msa0272520:intron | 30.0% |
| TCAATCCAAAAGATCTTCAT+CGG | - | chr2_3:4061127-4061146 | Msa0272520:intron | 30.0% | |
| TAGATGATACAGGTATATGT+CGG | - | chr2_3:4061181-4061200 | Msa0272520:CDS | 30.0% | |
| ATGGGATATACACCTTATTA+GGG | + | chr2_3:4061489-4061508 | None:intergenic | 30.0% | |
| AATGGGATATACACCTTATT+AGG | + | chr2_3:4061490-4061509 | None:intergenic | 30.0% | |
| TATCAGAATCATATCCAGTA+AGG | + | chr2_3:4061528-4061547 | None:intergenic | 30.0% | |
| TTACTGGATATGATTCTGAT+AGG | - | chr2_3:4061527-4061546 | Msa0272520:intron | 30.0% | |
| ! | GTTTGGGTTATGATTATCTA+AGG | + | chr2_3:4061862-4061881 | None:intergenic | 30.0% |
| ! | AGTGCTTTTGTAACGAAACT+GGG | + | chr2_3:4056254-4056273 | None:intergenic | 35.0% |
| ! | AAGTGCTTTTGTAACGAAAC+TGG | + | chr2_3:4056255-4056274 | None:intergenic | 35.0% |
| ATTGAAGAAGCCATGAACTT+AGG | + | chr2_3:4056284-4056303 | None:intergenic | 35.0% | |
| AGTAAGTGAGGAATAAACCA+TGG | - | chr2_3:4056559-4056578 | Msa0272520:CDS | 35.0% | |
| GTAAGTGAGGAATAAACCAT+GGG | - | chr2_3:4056560-4056579 | Msa0272520:CDS | 35.0% | |
| !! | TGTTAGCTAAATTGGTTTGC+AGG | - | chr2_3:4056672-4056691 | Msa0272520:CDS | 35.0% |
| !! | AACCTTCTTCTTTCGCTTTT+CGG | + | chr2_3:4056708-4056727 | None:intergenic | 35.0% |
| ! | TGAGAAGAAGTACAAGAGAA+TGG | + | chr2_3:4057071-4057090 | None:intergenic | 35.0% |
| AAGAAACCGTAATGTCAATG+AGG | - | chr2_3:4057155-4057174 | Msa0272520:intron | 35.0% | |
| AGAAACCGTAATGTCAATGA+GGG | - | chr2_3:4057156-4057175 | Msa0272520:intron | 35.0% | |
| TCTGGTTATCCTTCATTGAT+AGG | - | chr2_3:4057239-4057258 | Msa0272520:intron | 35.0% | |
| CATAGACAACCTATCAATGA+AGG | + | chr2_3:4057251-4057270 | None:intergenic | 35.0% | |
| AGATAAGTTTAAGAGGAAGG+GGG | + | chr2_3:4057323-4057342 | None:intergenic | 35.0% | |
| !! | AACACAAAGGAGTACTATAC+AGG | + | chr2_3:4057356-4057375 | None:intergenic | 35.0% |
| ! | TCTAGTACAACTGGATTTTC+AGG | + | chr2_3:4057664-4057683 | None:intergenic | 35.0% |
| AGTCTAACTATTAACAGACC+TGG | - | chr2_3:4057705-4057724 | Msa0272520:intron | 35.0% | |
| !!! | GATTTGGTTTTCATCCGTAA+TGG | + | chr2_3:4057785-4057804 | None:intergenic | 35.0% |
| TGCCATGTATATACAATAGG+GGG | - | chr2_3:4057857-4057876 | Msa0272520:intron | 35.0% | |
| TGGAAAACTTACTTTGCATC+AGG | + | chr2_3:4058003-4058022 | None:intergenic | 35.0% | |
| ! | GATGCAAAGTAAGTTTTCCA+TGG | - | chr2_3:4058003-4058022 | Msa0272520:intron | 35.0% |
| ACCTCACATAACACATATCA+GGG | + | chr2_3:4058210-4058229 | None:intergenic | 35.0% | |
| AGGGTGATATAACTAATGCT+CGG | - | chr2_3:4058525-4058544 | Msa0272520:intron | 35.0% | |
| ACATCTGTCAACAGAATTGA+AGG | + | chr2_3:4058581-4058600 | None:intergenic | 35.0% | |
| TCAAATCGTGTTTCGAAATG+GGG | + | chr2_3:4058615-4058634 | None:intergenic | 35.0% | |
| CTCAAATCGTGTTTCGAAAT+GGG | + | chr2_3:4058616-4058635 | None:intergenic | 35.0% | |
| ACTCAAATCGTGTTTCGAAA+TGG | + | chr2_3:4058617-4058636 | None:intergenic | 35.0% | |
| TCTCATGATGAATGAACTTG+AGG | + | chr2_3:4058703-4058722 | None:intergenic | 35.0% | |
| ! | AAAACCTTTTTCCACTAGGT+CGG | + | chr2_3:4058853-4058872 | None:intergenic | 35.0% |
| TTGGCTAGACTTTATAATGC+AGG | + | chr2_3:4059049-4059068 | None:intergenic | 35.0% | |
| ACATCACCAAAGGATCAATT+TGG | + | chr2_3:4059116-4059135 | None:intergenic | 35.0% | |
| ! | TGTTTTCTCTTGTTCTGTTC+AGG | - | chr2_3:4059229-4059248 | Msa0272520:intron | 35.0% |
| ! | CAGGTCATTAGACATTTTGA+TGG | - | chr2_3:4059248-4059267 | Msa0272520:intron | 35.0% |
| !! | TAGACATTTTGATGGTTGCA+AGG | - | chr2_3:4059256-4059275 | Msa0272520:intron | 35.0% |
| TGACATGGAGCAACAAAAAA+GGG | + | chr2_3:4059443-4059462 | None:intergenic | 35.0% | |
| TTGACATGGAGCAACAAAAA+AGG | + | chr2_3:4059444-4059463 | None:intergenic | 35.0% | |
| !!! | GCTTCATTTTTTGCAGTTAC+CGG | - | chr2_3:4059526-4059545 | Msa0272520:intron | 35.0% |
| !!! | TATTTTTTGCGATCGCCAAA+AGG | + | chr2_3:4059695-4059714 | None:intergenic | 35.0% |
| GCGATCGCAAAAAATATTGA+AGG | - | chr2_3:4059699-4059718 | Msa0272520:CDS | 35.0% | |
| GCATATGTCTATTAAAGGTG+AGG | + | chr2_3:4059739-4059758 | None:intergenic | 35.0% | |
| ATGAAACTCTACGCAAATCA+AGG | + | chr2_3:4059853-4059872 | None:intergenic | 35.0% | |
| GCTAATTACTTACTTCTTGC+AGG | - | chr2_3:4059916-4059935 | Msa0272520:intron | 35.0% | |
| TGCGAAGATATTTAGAGGAA+AGG | - | chr2_3:4059985-4060004 | Msa0272520:intron | 35.0% | |
| CAAATACCTGACAGTATAGA+AGG | + | chr2_3:4060018-4060037 | None:intergenic | 35.0% | |
| GCCATTAAGATTTCAGGAAT+TGG | - | chr2_3:4060050-4060069 | Msa0272520:intron | 35.0% | |
| TTCAAAGTTAGAAGTCGTAG+TGG | + | chr2_3:4060257-4060276 | None:intergenic | 35.0% | |
| !! | TCCGAATTTTGGTAAAACTC+TGG | + | chr2_3:4060300-4060319 | None:intergenic | 35.0% |
| AACAGAAACAATGAGCCAAT+TGG | - | chr2_3:4060319-4060338 | Msa0272520:intron | 35.0% | |
| ! | ACTTGTAGCATGCTTTTGTT+TGG | - | chr2_3:4060461-4060480 | Msa0272520:intron | 35.0% |
| !! | GCTAAAATTGTTTTTCCCTG+TGG | - | chr2_3:4060661-4060680 | Msa0272520:intron | 35.0% |
| !! | CTGGAATTACGACTACTTTT+TGG | + | chr2_3:4060701-4060720 | None:intergenic | 35.0% |
| ACTAAAGTTCTTACCTATGC+TGG | + | chr2_3:4060720-4060739 | None:intergenic | 35.0% | |
| ! | TTATGAATCTTTTGACGAGG+TGG | - | chr2_3:4060998-4061017 | Msa0272520:intron | 35.0% |
| TTTGACGAGGTGGTTTAAAA+TGG | - | chr2_3:4061008-4061027 | Msa0272520:intron | 35.0% | |
| ! | TCTTTTGGATTGAATCCTTC+TGG | + | chr2_3:4061120-4061139 | None:intergenic | 35.0% |
| GCTGAATTCATTTCCATTCA+GGG | + | chr2_3:4061269-4061288 | None:intergenic | 35.0% | |
| AGCTGAATTCATTTCCATTC+AGG | + | chr2_3:4061270-4061289 | None:intergenic | 35.0% | |
| !! | TAATTTTCATGGCCTTGATG+TGG | - | chr2_3:4061412-4061431 | Msa0272520:intron | 35.0% |
| GCATTAATTACTCCACATCA+AGG | + | chr2_3:4061427-4061446 | None:intergenic | 35.0% | |
| AGTTTGCAGATTGTGTTAGT+GGG | - | chr2_3:4061452-4061471 | Msa0272520:CDS | 35.0% | |
| !! | TATATCCCATTTCTAGCTTG+CGG | - | chr2_3:4061499-4061518 | Msa0272520:intron | 35.0% |
| CAAATAACACTACGAATCAG+TGG | + | chr2_3:4061716-4061735 | None:intergenic | 35.0% | |
| !! | CACTGATTCGTAGTGTTATT+TGG | - | chr2_3:4061714-4061733 | Msa0272520:intron | 35.0% |
| ! | ATTTGGGACAACAAAAGACT+CGG | + | chr2_3:4061825-4061844 | None:intergenic | 35.0% |
| ! | ACTTTTGCCTCCTAAGTTCA+TGG | - | chr2_3:4056271-4056290 | Msa0272520:three_prime_UTR | 40.0% |
| CAGACATTTACTCAAACACC+TGG | + | chr2_3:4056469-4056488 | None:intergenic | 40.0% | |
| GTTTCTTAGGCAAGTAAGTG+AGG | - | chr2_3:4056547-4056566 | Msa0272520:CDS | 40.0% | |
| CAAAGCTTCAAGGGATAAGA+GGG | - | chr2_3:4056583-4056602 | Msa0272520:CDS | 40.0% | |
| TACCGAAAAGCGAAAGAAGA+AGG | - | chr2_3:4056703-4056722 | Msa0272520:CDS | 40.0% | |
| GAAAAGCGAAAGAAGAAGGT+TGG | - | chr2_3:4056707-4056726 | Msa0272520:CDS | 40.0% | |
| ! | AAAGCGCCATAGTTTGTGTT+TGG | + | chr2_3:4057117-4057136 | None:intergenic | 40.0% |
| GAAACCGTAATGTCAATGAG+GGG | - | chr2_3:4057157-4057176 | Msa0272520:intron | 40.0% | |
| CAATCCCCTCATTGACATTA+CGG | + | chr2_3:4057164-4057183 | None:intergenic | 40.0% | |
| GATAAGTTTAAGAGGAAGGG+GGG | + | chr2_3:4057322-4057341 | None:intergenic | 40.0% | |
| ! | AAATGAAAACTTTGGGGGCT+GGG | + | chr2_3:4057581-4057600 | None:intergenic | 40.0% |
| ! | TAAATGAAAACTTTGGGGGC+TGG | + | chr2_3:4057582-4057601 | None:intergenic | 40.0% |
| TGCCTCACTAATGCAAATGA+AGG | - | chr2_3:4057626-4057645 | Msa0272520:intron | 40.0% | |
| CTCCTTCATTTGCATTAGTG+AGG | + | chr2_3:4057631-4057650 | None:intergenic | 40.0% | |
| CTCACTAATGCAAATGAAGG+AGG | - | chr2_3:4057629-4057648 | Msa0272520:intron | 40.0% | |
| !! | CAAGTGGTTTCTAGTACAAC+TGG | + | chr2_3:4057673-4057692 | None:intergenic | 40.0% |
| GCCATGTATATACAATAGGG+GGG | - | chr2_3:4057858-4057877 | Msa0272520:intron | 40.0% | |
| TCCCCCCTATTGTATATACA+TGG | + | chr2_3:4057862-4057881 | None:intergenic | 40.0% | |
| GTTGCAGCTATCTTGATATC+CGG | - | chr2_3:4057912-4057931 | Msa0272520:intron | 40.0% | |
| GATGTGAGATCTCAATGTCA+TGG | + | chr2_3:4058051-4058070 | None:intergenic | 40.0% | |
| TCCCTGATATGTGTTATGTG+AGG | - | chr2_3:4058206-4058225 | Msa0272520:CDS | 40.0% | |
| CACCTCACATAACACATATC+AGG | + | chr2_3:4058211-4058230 | None:intergenic | 40.0% | |
| ! | ACAGAGTGTTTGGAATGTGA+AGG | + | chr2_3:4058365-4058384 | None:intergenic | 40.0% |
| TTGCTGCATCATGATATGCA+GGG | - | chr2_3:4058430-4058449 | Msa0272520:intron | 40.0% | |
| !! | AGCTATTGATTTGCAGCCAA+TGG | - | chr2_3:4058475-4058494 | Msa0272520:intron | 40.0% |
| ACCTGGATAACACCTTCAAT+CGG | + | chr2_3:4058503-4058522 | None:intergenic | 40.0% | |
| CAAATCGTGTTTCGAAATGG+GGG | + | chr2_3:4058614-4058633 | None:intergenic | 40.0% | |
| ! | AAACCTTTTTCCACTAGGTC+GGG | + | chr2_3:4058852-4058871 | None:intergenic | 40.0% |
| ATGTGGTTGAAATTCGACAG+AGG | + | chr2_3:4058889-4058908 | None:intergenic | 40.0% | |
| ! | AAGGATCAATTTGGAGCAAC+AGG | + | chr2_3:4059107-4059126 | None:intergenic | 40.0% |
| GTTGCTCCAAATTGATCCTT+TGG | - | chr2_3:4059107-4059126 | Msa0272520:intron | 40.0% | |
| !!! | ATCCTTTGGTGATGTCGTTT+TGG | - | chr2_3:4059121-4059140 | Msa0272520:intron | 40.0% |
| AACCAAAACGACATCACCAA+AGG | + | chr2_3:4059126-4059145 | None:intergenic | 40.0% | |
| !!! | GTGATGTCGTTTTGGTTTGT+TGG | - | chr2_3:4059129-4059148 | Msa0272520:intron | 40.0% |
| !!! | CGTTTTGGTTTGTTGGAACT+TGG | - | chr2_3:4059136-4059155 | Msa0272520:intron | 40.0% |
| !! | TTGGTTTGTTGGAACTTGGA+AGG | - | chr2_3:4059140-4059159 | Msa0272520:intron | 40.0% |
| GGAACTTGGAAGGATCATAT+AGG | - | chr2_3:4059150-4059169 | Msa0272520:intron | 40.0% | |
| TTACCCTCAACCTCTTTCAT+CGG | - | chr2_3:4059397-4059416 | Msa0272520:intron | 40.0% | |
| TTCATCCATGTCATGAAGTC+CGG | + | chr2_3:4059548-4059567 | None:intergenic | 40.0% | |
| GCTTACTGCAAGTATGAGTT+GGG | + | chr2_3:4059581-4059600 | None:intergenic | 40.0% | |
| TGCTTACTGCAAGTATGAGT+TGG | + | chr2_3:4059582-4059601 | None:intergenic | 40.0% | |
| AGATAAGGTAGTAGACTGAC+TGG | + | chr2_3:4059771-4059790 | None:intergenic | 40.0% | |
| TTAAACTATACACCACGCAC+TGG | + | chr2_3:4059815-4059834 | None:intergenic | 40.0% | |
| GTTACTCATGTACTGAAGGA+AGG | - | chr2_3:4059950-4059969 | Msa0272520:intron | 40.0% | |
| TCCTGAAATCTTAATGGCGA+GGG | + | chr2_3:4060048-4060067 | None:intergenic | 40.0% | |
| TTCCTGAAATCTTAATGGCG+AGG | + | chr2_3:4060049-4060068 | None:intergenic | 40.0% | |
| !! | GTAGCATGCTTTTGTTTGGT+TGG | - | chr2_3:4060465-4060484 | Msa0272520:intron | 40.0% |
| AGTAGTCGTAATTCCAGCAT+AGG | - | chr2_3:4060704-4060723 | Msa0272520:intron | 40.0% | |
| ! | ACGAGGTGGTTTAAAATGGT+AGG | - | chr2_3:4061012-4061031 | Msa0272520:intron | 40.0% |
| ! | GGTGGTTTAAAATGGTAGGA+AGG | - | chr2_3:4061016-4061035 | Msa0272520:intron | 40.0% |
| ! | GGTTTAAAATGGTAGGAAGG+CGG | - | chr2_3:4061019-4061038 | Msa0272520:intron | 40.0% |
| ! | GTTTAAAATGGTAGGAAGGC+GGG | - | chr2_3:4061020-4061039 | Msa0272520:intron | 40.0% |
| TTGGATTGAATCCTTCTGGA+GGG | + | chr2_3:4061116-4061135 | None:intergenic | 40.0% | |
| TTTGGATTGAATCCTTCTGG+AGG | + | chr2_3:4061117-4061136 | None:intergenic | 40.0% | |
| ! | AGAAGCCGATGAAGATCTTT+TGG | + | chr2_3:4061135-4061154 | None:intergenic | 40.0% |
| TTCAAAGTTGCATCCCTGAA+TGG | - | chr2_3:4061253-4061272 | Msa0272520:intron | 40.0% | |
| GAGTTTGCAGATTGTGTTAG+TGG | - | chr2_3:4061451-4061470 | Msa0272520:CDS | 40.0% | |
| !! | ATATCCCATTTCTAGCTTGC+GGG | - | chr2_3:4061500-4061519 | Msa0272520:intron | 40.0% |
| !! | ACTCTAGAGCTCTCTTGTAA+GGG | + | chr2_3:4061624-4061643 | None:intergenic | 40.0% |
| !! | AACTCTAGAGCTCTCTTGTA+AGG | + | chr2_3:4061625-4061644 | None:intergenic | 40.0% |
| !!! | GGGAGAGATTTTCAAGTTCT+CGG | + | chr2_3:4061672-4061691 | None:intergenic | 40.0% |
| AGAACTTGAAAATCTCTCCC+TGG | - | chr2_3:4061672-4061691 | Msa0272520:intron | 40.0% | |
| TATGCAAGATCAGGAATCCA+GGG | + | chr2_3:4061692-4061711 | None:intergenic | 40.0% | |
| ATATGCAAGATCAGGAATCC+AGG | + | chr2_3:4061693-4061712 | None:intergenic | 40.0% | |
| ATCAGTGGATATGCAAGATC+AGG | + | chr2_3:4061701-4061720 | None:intergenic | 40.0% | |
| AAAGACTCGGAAGAAAGGAA+AGG | + | chr2_3:4061812-4061831 | None:intergenic | 40.0% | |
| CAACAAAAGACTCGGAAGAA+AGG | + | chr2_3:4061817-4061836 | None:intergenic | 40.0% | |
| GAAGAAGCCATGAACTTAGG+AGG | + | chr2_3:4056281-4056300 | None:intergenic | 45.0% | |
| AGAATCTCGTACAGTGTACG+AGG | + | chr2_3:4056309-4056328 | None:intergenic | 45.0% | |
| CCTGGAGTGCATATCAACAT+AGG | + | chr2_3:4056451-4056470 | None:intergenic | 45.0% | |
| CCTATGTTGATATGCACTCC+AGG | - | chr2_3:4056448-4056467 | Msa0272520:three_prime_UTR | 45.0% | |
| AAACCATGGGCAAAGCTTCA+AGG | - | chr2_3:4056573-4056592 | Msa0272520:CDS | 45.0% | |
| AACCATGGGCAAAGCTTCAA+GGG | - | chr2_3:4056574-4056593 | Msa0272520:CDS | 45.0% | |
| GCAAAGCTTCAAGGGATAAG+AGG | - | chr2_3:4056582-4056601 | Msa0272520:CDS | 45.0% | |
| CTTCAAGGGATAAGAGGGTA+TGG | - | chr2_3:4056588-4056607 | Msa0272520:CDS | 45.0% | |
| ! | GTAGATTTATGTGCTGCTCC+AGG | - | chr2_3:4057008-4057027 | Msa0272520:intron | 45.0% |
| CGTAATGTCAATGAGGGGAT+TGG | - | chr2_3:4057162-4057181 | Msa0272520:intron | 45.0% | |
| GGGGAACTAACATTCTGTAC+TGG | + | chr2_3:4057554-4057573 | None:intergenic | 45.0% | |
| ! | AATGAAAACTTTGGGGGCTG+GGG | + | chr2_3:4057580-4057599 | None:intergenic | 45.0% |
| ATGGGTCGTATACTATGACC+AGG | + | chr2_3:4057726-4057745 | None:intergenic | 45.0% | |
| CTGCATATCATGATGCAGCA+AGG | + | chr2_3:4058431-4058450 | None:intergenic | 45.0% | |
| CTTGCTGCATCATGATATGC+AGG | - | chr2_3:4058429-4058448 | Msa0272520:intron | 45.0% | |
| !! | TCCGATTGAAGGTGTTATCC+AGG | - | chr2_3:4058499-4058518 | Msa0272520:intron | 45.0% |
| TAGTTATATCACCCTGCACC+TGG | + | chr2_3:4058520-4058539 | None:intergenic | 45.0% | |
| ! | AACCTTTTTCCACTAGGTCG+GGG | + | chr2_3:4058851-4058870 | None:intergenic | 45.0% |
| AGTTACCGGACTTCATGACA+TGG | - | chr2_3:4059540-4059559 | Msa0272520:intron | 45.0% | |
| ACTCATGTACTGAAGGAAGG+AGG | - | chr2_3:4059953-4059972 | Msa0272520:intron | 45.0% | |
| CTCATGTACTGAAGGAAGGA+GGG | - | chr2_3:4059954-4059973 | Msa0272520:intron | 45.0% | |
| CACAAGCCTTCTATACTGTC+AGG | - | chr2_3:4060009-4060028 | Msa0272520:intron | 45.0% | |
| CCTGAAATCTTAATGGCGAG+GGG | + | chr2_3:4060047-4060066 | None:intergenic | 45.0% | |
| GCTTTGCAAAAGTCACCACA+GGG | + | chr2_3:4060679-4060698 | None:intergenic | 45.0% | |
| TTAGTTGTTCACCCTTGCAG+AGG | - | chr2_3:4061065-4061084 | Msa0272520:intron | 45.0% | |
| AACTGCAAATGCCTCTGCAA+GGG | + | chr2_3:4061079-4061098 | None:intergenic | 45.0% | |
| AAACTGCAAATGCCTCTGCA+AGG | + | chr2_3:4061080-4061099 | None:intergenic | 45.0% | |
| GAAAATTACTCCCCTCCAGA+AGG | - | chr2_3:4061102-4061121 | Msa0272520:intron | 45.0% | |
| ! | TGGATTGAATCCTTCTGGAG+GGG | + | chr2_3:4061115-4061134 | None:intergenic | 45.0% |
| !! | TCTTCATCGGCTTCTTGAGA+AGG | - | chr2_3:4061140-4061159 | Msa0272520:intron | 45.0% |
| AGAAGGTTGGAAGTCCATCA+GGG | - | chr2_3:4061157-4061176 | Msa0272520:intron | 45.0% | |
| TTGCAGATTGTGTTAGTGGG+TGG | - | chr2_3:4061455-4061474 | Msa0272520:CDS | 45.0% | |
| ! | AGATTGTGTTAGTGGGTGGT+TGG | - | chr2_3:4061459-4061478 | Msa0272520:CDS | 45.0% |
| !! | TATCCCATTTCTAGCTTGCG+GGG | - | chr2_3:4061501-4061520 | Msa0272520:intron | 45.0% |
| TATCCACTGCCTAAAGTTGC+TGG | - | chr2_3:4061553-4061572 | Msa0272520:intron | 45.0% | |
| ATCCACTGCCTAAAGTTGCT+GGG | - | chr2_3:4061554-4061573 | Msa0272520:intron | 45.0% | |
| TATGTTCCCCCAGCAACTTT+AGG | + | chr2_3:4061565-4061584 | None:intergenic | 45.0% | |
| ! | TCTAGAGCTCTCTTGTAAGG+GGG | + | chr2_3:4061622-4061641 | None:intergenic | 45.0% |
| !! | CTCTAGAGCTCTCTTGTAAG+GGG | + | chr2_3:4061623-4061642 | None:intergenic | 45.0% |
| ATCCCTTGAAGCTTTGCCCA+TGG | + | chr2_3:4056579-4056598 | None:intergenic | 50.0% | |
| ! | ATGAAAACTTTGGGGGCTGG+GGG | + | chr2_3:4057579-4057598 | None:intergenic | 50.0% |
| CTTTGCATCAGGTGCAAGCT+TGG | + | chr2_3:4057992-4058011 | None:intergenic | 50.0% | |
| ACACCTTCAATCGGAGCCAT+TGG | + | chr2_3:4058494-4058513 | None:intergenic | 50.0% | |
| !! | TGAAGGTGTTATCCAGGTGC+AGG | - | chr2_3:4058505-4058524 | Msa0272520:intron | 50.0% |
| !! | GAAGGTGTTATCCAGGTGCA+GGG | - | chr2_3:4058506-4058525 | Msa0272520:intron | 50.0% |
| TAATGCTCGGACTGCTGAAG+TGG | - | chr2_3:4058538-4058557 | Msa0272520:intron | 50.0% | |
| ACCATCGCACACAACAAGGT+CGG | + | chr2_3:4059282-4059301 | None:intergenic | 50.0% | |
| GGTCCGATGAAAGAGGTTGA+GGG | + | chr2_3:4059403-4059422 | None:intergenic | 50.0% | |
| TGGTCCGATGAAAGAGGTTG+AGG | + | chr2_3:4059404-4059423 | None:intergenic | 50.0% | |
| TCTCGTTGGTCCGATGAAAG+AGG | + | chr2_3:4059410-4059429 | None:intergenic | 50.0% | |
| CCCCTCGCCATTAAGATTTC+AGG | - | chr2_3:4060044-4060063 | Msa0272520:intron | 50.0% | |
| ACTCCTACAGGTGCACTTGT+TGG | + | chr2_3:4060410-4060429 | None:intergenic | 50.0% | |
| GGCTTTGCAAAAGTCACCAC+AGG | + | chr2_3:4060680-4060699 | None:intergenic | 50.0% | |
| ! | GCAAGTGTTTGGAGGCACAA+GGG | + | chr2_3:4060942-4060961 | None:intergenic | 50.0% |
| ! | TGCAAGTGTTTGGAGGCACA+AGG | + | chr2_3:4060943-4060962 | None:intergenic | 50.0% |
| !! | CATCGGCTTCTTGAGAAGGT+TGG | - | chr2_3:4061144-4061163 | Msa0272520:intron | 50.0% |
| GAGAAGGTTGGAAGTCCATC+AGG | - | chr2_3:4061156-4061175 | Msa0272520:intron | 50.0% | |
| GAAGGTTGGAAGTCCATCAG+GGG | - | chr2_3:4061158-4061177 | Msa0272520:intron | 50.0% | |
| CCTGTATCATCTACCCCTGA+TGG | + | chr2_3:4061174-4061193 | None:intergenic | 50.0% | |
| CCATCAGGGGTAGATGATAC+AGG | - | chr2_3:4061171-4061190 | Msa0272520:CDS | 50.0% | |
| ! | TGTGTTAGTGGGTGGTTGGA+AGG | - | chr2_3:4061463-4061482 | Msa0272520:CDS | 50.0% |
| GTGGTTGGAAGGCCCTAATA+AGG | - | chr2_3:4061474-4061493 | Msa0272520:CDS | 50.0% | |
| TCCACTGCCTAAAGTTGCTG+GGG | - | chr2_3:4061555-4061574 | Msa0272520:intron | 50.0% | |
| TGGGGGAACATATCAGAGCT+TGG | - | chr2_3:4061573-4061592 | Msa0272520:intron | 50.0% | |
| TAGAGCTCTCTTGTAAGGGG+GGG | + | chr2_3:4061620-4061639 | None:intergenic | 50.0% | |
| CTAGAGCTCTCTTGTAAGGG+GGG | + | chr2_3:4061621-4061640 | None:intergenic | 50.0% | |
| CAGCCAATGGCTCCGATTGA+AGG | - | chr2_3:4058488-4058507 | Msa0272520:intron | 55.0% | |
| ATGTATCCACCCCGACCTAG+TGG | - | chr2_3:4058839-4058858 | Msa0272520:intron | 55.0% | |
| ! | CTTTTTCCACTAGGTCGGGG+TGG | + | chr2_3:4058848-4058867 | None:intergenic | 55.0% |
| CACCCCGACCTAGTGGAAAA+AGG | - | chr2_3:4058846-4058865 | Msa0272520:intron | 55.0% | |
| GAGCACCATCGCACACAACA+AGG | + | chr2_3:4059286-4059305 | None:intergenic | 55.0% | |
| GCACCAACAAGTGCACCTGT+AGG | - | chr2_3:4060404-4060423 | Msa0272520:intron | 55.0% | |
| GGTCCCCGCAAGCTAGAAAT+GGG | + | chr2_3:4061507-4061526 | None:intergenic | 55.0% | |
| AGGTCCCCGCAAGCTAGAAA+TGG | + | chr2_3:4061508-4061527 | None:intergenic | 55.0% | |
| CCACTGCCTAAAGTTGCTGG+GGG | - | chr2_3:4061556-4061575 | Msa0272520:intron | 55.0% | |
| GGGGCAATAGGAGGTTGTAC+TGG | + | chr2_3:4061601-4061620 | None:intergenic | 55.0% | |
| TTGTAAGGGGGGGCAATAGG+AGG | + | chr2_3:4061610-4061629 | None:intergenic | 55.0% | |
| CTCTTGTAAGGGGGGGCAAT+AGG | + | chr2_3:4061613-4061632 | None:intergenic | 55.0% | |
| ! | TATGTGCTGCTCCAGGCAGC+TGG | - | chr2_3:4057015-4057034 | Msa0272520:CDS | 60.0% |
| AGTACCTGACTCCAGCTGCC+TGG | + | chr2_3:4057029-4057048 | None:intergenic | 60.0% | |
| AGGCAGCTGGAGTCAGGTAC+TGG | - | chr2_3:4057028-4057047 | Msa0272520:CDS | 60.0% | |
| ! | AACTTTGGGGGCTGGGGGTA+GGG | + | chr2_3:4057574-4057593 | None:intergenic | 60.0% |
| ! | AAACTTTGGGGGCTGGGGGT+AGG | + | chr2_3:4057575-4057594 | None:intergenic | 60.0% |
| CAGGTGCAAGCTTGGCTGGA+AGG | + | chr2_3:4057984-4058003 | None:intergenic | 60.0% | |
| GCATCAGGTGCAAGCTTGGC+TGG | + | chr2_3:4057988-4058007 | None:intergenic | 60.0% | |
| ! | GCCGACCTTGTTGTGTGCGA+TGG | - | chr2_3:4059278-4059297 | Msa0272520:intron | 60.0% |
| GTGTGCGATGGTGCTCCTGA+TGG | - | chr2_3:4059290-4059309 | Msa0272520:intron | 60.0% | |
| AATGCGCACACACCAGTGCG+TGG | - | chr2_3:4059800-4059819 | Msa0272520:intron | 60.0% | |
| ! | CTAGCTTGCGGGGACCTTAC+TGG | - | chr2_3:4061511-4061530 | Msa0272520:intron | 60.0% |
| CCCCCAGCAACTTTAGGCAG+TGG | + | chr2_3:4061559-4061578 | None:intergenic | 60.0% | |
| TGCTCCAGGCAGCTGGAGTC+AGG | - | chr2_3:4057022-4057041 | Msa0272520:CDS | 65.0% | |
| ! | ACTTTGGGGGCTGGGGGTAG+GGG | + | chr2_3:4057573-4057592 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 4056226 | 4061978 | 4056226 | ID=Msa0272520;Name=Msa0272520 |
| chr2_3 | mRNA | 4056226 | 4061978 | 4056226 | ID=Msa0272520-mRNA-1;Parent=Msa0272520;Name=Msa0272520-mRNA-1;_AED=0.04;_eAED=0.04;_QI=229|1|1|1|0.90|0.91|12|276|316 |
| chr2_3 | exon | 4056226 | 4056743 | 4056226 | ID=Msa0272520-mRNA-1:exon:2060;Parent=Msa0272520-mRNA-1 |
| chr2_3 | exon | 4057012 | 4057119 | 4057012 | ID=Msa0272520-mRNA-1:exon:2059;Parent=Msa0272520-mRNA-1 |
| chr2_3 | exon | 4057479 | 4057542 | 4057479 | ID=Msa0272520-mRNA-1:exon:2058;Parent=Msa0272520-mRNA-1 |
| chr2_3 | exon | 4058174 | 4058266 | 4058174 | ID=Msa0272520-mRNA-1:exon:2057;Parent=Msa0272520-mRNA-1 |
| chr2_3 | exon | 4058610 | 4058662 | 4058610 | ID=Msa0272520-mRNA-1:exon:2056;Parent=Msa0272520-mRNA-1 |
| chr2_3 | exon | 4058893 | 4058953 | 4058893 | ID=Msa0272520-mRNA-1:exon:2055;Parent=Msa0272520-mRNA-1 |
| chr2_3 | exon | 4059645 | 4059753 | 4059645 | ID=Msa0272520-mRNA-1:exon:2054;Parent=Msa0272520-mRNA-1 |
| chr2_3 | exon | 4060194 | 4060243 | 4060194 | ID=Msa0272520-mRNA-1:exon:2053;Parent=Msa0272520-mRNA-1 |
| chr2_3 | exon | 4061161 | 4061210 | 4061161 | ID=Msa0272520-mRNA-1:exon:2052;Parent=Msa0272520-mRNA-1 |
| chr2_3 | exon | 4061417 | 4061510 | 4061417 | ID=Msa0272520-mRNA-1:exon:2051;Parent=Msa0272520-mRNA-1 |
| chr2_3 | exon | 4061600 | 4061648 | 4061600 | ID=Msa0272520-mRNA-1:exon:2050;Parent=Msa0272520-mRNA-1 |
| chr2_3 | exon | 4061772 | 4061978 | 4061772 | ID=Msa0272520-mRNA-1:exon:2049;Parent=Msa0272520-mRNA-1 |
| chr2_3 | five_prime_UTR | 4061772 | 4061978 | 4061772 | ID=Msa0272520-mRNA-1:five_prime_utr;Parent=Msa0272520-mRNA-1 |
| chr2_3 | five_prime_UTR | 4061627 | 4061648 | 4061627 | ID=Msa0272520-mRNA-1:five_prime_utr;Parent=Msa0272520-mRNA-1 |
| chr2_3 | CDS | 4061600 | 4061626 | 4061600 | ID=Msa0272520-mRNA-1:cds;Parent=Msa0272520-mRNA-1 |
| chr2_3 | CDS | 4061417 | 4061510 | 4061417 | ID=Msa0272520-mRNA-1:cds;Parent=Msa0272520-mRNA-1 |
| chr2_3 | CDS | 4061161 | 4061210 | 4061161 | ID=Msa0272520-mRNA-1:cds;Parent=Msa0272520-mRNA-1 |
| chr2_3 | CDS | 4060194 | 4060243 | 4060194 | ID=Msa0272520-mRNA-1:cds;Parent=Msa0272520-mRNA-1 |
| chr2_3 | CDS | 4059645 | 4059753 | 4059645 | ID=Msa0272520-mRNA-1:cds;Parent=Msa0272520-mRNA-1 |
| chr2_3 | CDS | 4058893 | 4058953 | 4058893 | ID=Msa0272520-mRNA-1:cds;Parent=Msa0272520-mRNA-1 |
| chr2_3 | CDS | 4058610 | 4058662 | 4058610 | ID=Msa0272520-mRNA-1:cds;Parent=Msa0272520-mRNA-1 |
| chr2_3 | CDS | 4058174 | 4058266 | 4058174 | ID=Msa0272520-mRNA-1:cds;Parent=Msa0272520-mRNA-1 |
| chr2_3 | CDS | 4057479 | 4057542 | 4057479 | ID=Msa0272520-mRNA-1:cds;Parent=Msa0272520-mRNA-1 |
| chr2_3 | CDS | 4057012 | 4057119 | 4057012 | ID=Msa0272520-mRNA-1:cds;Parent=Msa0272520-mRNA-1 |
| chr2_3 | CDS | 4056502 | 4056743 | 4056502 | ID=Msa0272520-mRNA-1:cds;Parent=Msa0272520-mRNA-1 |
| chr2_3 | three_prime_UTR | 4056226 | 4056501 | 4056226 | ID=Msa0272520-mRNA-1:three_prime_utr;Parent=Msa0272520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
