Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0314500 | XP_003593800.1 | 98.941 | 472 | 5 | 0 | 1 | 472 | 95 | 566 | 0.0 | 973 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0314500 | sp|Q9C7N2|CAD1_ARATH | 76.695 | 472 | 103 | 1 | 1 | 472 | 97 | 561 | 0.0 | 747 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0089850 | Msa0314500 | 0.804292 | 2.317196e-49 | -8.615850e-47 |
| Msa0314500 | Msa0463620 | 0.806122 | 9.588735e-50 | -8.615850e-47 |
| Msa0314500 | Msa0614350 | 0.811505 | 6.771417e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0314500 | MtrunA17_Chr2g0284691 | 98.941 | 472 | 5 | 0 | 1 | 472 | 95 | 566 | 0.0 | 973 |
| Msa0314500 | MtrunA17_Chr4g0013011 | 61.477 | 501 | 161 | 4 | 1 | 472 | 87 | 584 | 0.0 | 639 |
| Msa0314500 | MtrunA17_Chr2g0277061 | 44.423 | 520 | 225 | 9 | 1 | 471 | 90 | 594 | 5.04e-136 | 405 |
| Msa0314500 | MtrunA17_Chr8g0377631 | 40.000 | 530 | 254 | 7 | 1 | 472 | 95 | 618 | 8.27e-125 | 376 |
| Msa0314500 | MtrunA17_Chr8g0385121 | 41.459 | 521 | 238 | 10 | 1 | 470 | 84 | 588 | 7.74e-119 | 360 |
| Msa0314500 | MtrunA17_Chr4g0046841 | 39.698 | 529 | 247 | 10 | 1 | 470 | 96 | 611 | 2.56e-115 | 352 |
| Msa0314500 | MtrunA17_Chr3g0122211 | 38.674 | 543 | 248 | 12 | 1 | 472 | 91 | 619 | 2.68e-115 | 352 |
| Msa0314500 | MtrunA17_Chr8g0391931 | 41.491 | 523 | 241 | 14 | 1 | 471 | 80 | 589 | 2.61e-114 | 348 |
| Msa0314500 | MtrunA17_Chr8g0385131 | 38.384 | 495 | 265 | 8 | 1 | 472 | 89 | 566 | 1.05e-106 | 328 |
| Msa0314500 | MtrunA17_Chr8g0385181 | 39.836 | 487 | 258 | 12 | 1 | 472 | 87 | 553 | 1.01e-104 | 323 |
| Msa0314500 | MtrunA17_Chr8g0385171 | 37.619 | 210 | 128 | 3 | 1 | 207 | 82 | 291 | 2.27e-42 | 152 |
| Msa0314500 | MtrunA17_Chr8g0385161 | 36.090 | 266 | 144 | 5 | 211 | 472 | 1 | 244 | 6.20e-41 | 147 |
| Msa0314500 | MtrunA17_Chr8g0385141 | 37.037 | 108 | 67 | 1 | 33 | 139 | 13 | 120 | 4.18e-18 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0314500 | AT1G29690.1 | 76.695 | 472 | 103 | 1 | 1 | 472 | 97 | 561 | 0.0 | 747 |
| Msa0314500 | AT4G24290.2 | 43.462 | 520 | 229 | 9 | 1 | 471 | 89 | 592 | 4.61e-132 | 395 |
| Msa0314500 | AT4G24290.3 | 43.462 | 520 | 229 | 9 | 1 | 471 | 89 | 592 | 4.61e-132 | 395 |
| Msa0314500 | AT1G28380.1 | 40.153 | 523 | 251 | 10 | 1 | 471 | 92 | 604 | 3.39e-115 | 352 |
| Msa0314500 | AT1G14780.1 | 38.920 | 537 | 256 | 11 | 1 | 471 | 89 | 619 | 6.70e-110 | 338 |
| Msa0314500 | AT4G24290.1 | 39.516 | 248 | 122 | 2 | 1 | 220 | 89 | 336 | 3.90e-53 | 182 |
Find 134 sgRNAs with CRISPR-Local
Find 336 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGCCCAAACTCGAGTTATT+TGG | 0.151329 | 2_4:+10267835 | None:intergenic |
| TAAATTAACAAAACAAAATT+TGG | 0.151958 | 2_4:-10270707 | Msa0314500:CDS |
| GGTTCTGTTTGTTGCCTTCT+AGG | 0.176268 | 2_4:+10266998 | None:intergenic |
| ATCTCTTCAGTTCAGCTTAA+TGG | 0.199416 | 2_4:-10267772 | Msa0314500:CDS |
| TTGAGCAAAGTCATATTAAA+TGG | 0.226890 | 2_4:-10268440 | Msa0314500:CDS |
| CCTGGTCATTGGTTAGTTAC+AGG | 0.228325 | 2_4:-10266484 | Msa0314500:CDS |
| CAACTCGGCGTTTGGGATTT+CGG | 0.233431 | 2_4:-10266745 | Msa0314500:CDS |
| TCCTCCGGACCTTGCCATTT+GGG | 0.244585 | 2_4:+10266892 | None:intergenic |
| CTCCTCCGGACCTTGCCATT+TGG | 0.248166 | 2_4:+10266891 | None:intergenic |
| TGAAGACCTACAGTATTTCT+TGG | 0.272397 | 2_4:-10267862 | Msa0314500:CDS |
| CTGGGGCCCAACTCGGCGTT+TGG | 0.275698 | 2_4:-10266753 | Msa0314500:CDS |
| GAAAACCACTGACGAGAAAA+AGG | 0.281289 | 2_4:-10266584 | Msa0314500:CDS |
| CTGTTGCAGATGTAACAATA+TGG | 0.285114 | 2_4:+10269565 | None:intergenic |
| AGTACATGGCGTAAAGCTTT+TGG | 0.287935 | 2_4:-10268346 | Msa0314500:CDS |
| ATGGGTGGAAACTGTAAAAT+TGG | 0.302934 | 2_4:-10268421 | Msa0314500:CDS |
| ATTTCCAAATAACTCGAGTT+TGG | 0.307852 | 2_4:-10267839 | Msa0314500:CDS |
| TCTCTTCAGTTCAGCTTAAT+GGG | 0.316945 | 2_4:-10267771 | Msa0314500:CDS |
| GGCGCGCTGTTCCTTACTCT+TGG | 0.323349 | 2_4:-10270666 | Msa0314500:CDS |
| TCTGGTGTTCATATTGTCAC+TGG | 0.361807 | 2_4:-10266772 | Msa0314500:CDS |
| GTTAATTTAACTTCAAATAG+TGG | 0.363884 | 2_4:+10270721 | None:intergenic |
| CTCTTGGGATCCAGCATCCT+TGG | 0.364296 | 2_4:-10270650 | Msa0314500:CDS |
| CAACTTCACTGGCTCTTCAA+TGG | 0.371767 | 2_4:-10270791 | Msa0314500:CDS |
| TTAAGGACATTGAAAATGAT+AGG | 0.374657 | 2_4:-10269467 | Msa0314500:CDS |
| GCTAAGCTTGGAGTAGAAAA+AGG | 0.376859 | 2_4:-10266460 | Msa0314500:CDS |
| CAATCGGTGCAGTGCTTACA+TGG | 0.380427 | 2_4:+10266824 | None:intergenic |
| CAACGGCTGTCTTGCTCCTC+CGG | 0.382643 | 2_4:+10266877 | None:intergenic |
| TTTCCAAATAACTCGAGTTT+GGG | 0.387219 | 2_4:-10267838 | Msa0314500:CDS |
| CCCATCGTTTCTCTTCTTGA+AGG | 0.389904 | 2_4:-10268369 | Msa0314500:CDS |
| CTGGTCATTGGTTAGTTACA+GGG | 0.399984 | 2_4:-10266483 | Msa0314500:CDS |
| CTGGTGTTCATATTGTCACT+GGG | 0.402777 | 2_4:-10266771 | Msa0314500:CDS |
| AATTCTATGTTCAACTTCAC+TGG | 0.404887 | 2_4:-10270802 | Msa0314500:CDS |
| CGCAAGATATTCCTGGTCAT+TGG | 0.407797 | 2_4:-10266495 | Msa0314500:CDS |
| AACTGAAGAGATTGACAAAC+AGG | 0.408326 | 2_4:+10267783 | None:intergenic |
| TTAGGAAACAATACCTGATC+TGG | 0.416102 | 2_4:+10267729 | None:intergenic |
| GGCTATTGTTTCTAGTGTGA+AGG | 0.418357 | 2_4:+10266355 | None:intergenic |
| AATGAAAGGTCAGGCATAGA+AGG | 0.419511 | 2_4:-10270847 | Msa0314500:CDS |
| GCAGAGACGTCGTGTATATT+AGG | 0.422089 | 2_4:-10269536 | Msa0314500:CDS |
| TGGGGCCCAACTCGGCGTTT+GGG | 0.422862 | 2_4:-10266752 | Msa0314500:CDS |
| TTGCCATTTGGGAGCACCTA+TGG | 0.423342 | 2_4:+10266903 | None:intergenic |
| TTAACATAGTTCTCAATGTC+TGG | 0.426363 | 2_4:+10269486 | None:intergenic |
| GCGCGCTGTTCCTTACTCTT+GGG | 0.436346 | 2_4:-10270665 | Msa0314500:CDS |
| GCGCCTGACTTCATCATTCA+AGG | 0.443883 | 2_4:+10270684 | None:intergenic |
| GAAATCCCAAACGCCGAGTT+GGG | 0.444667 | 2_4:+10266747 | None:intergenic |
| AAATACTGTAGGTCTTCAAT+AGG | 0.446642 | 2_4:+10267867 | None:intergenic |
| TTGGTTTCAGTTATCTCAAT+CGG | 0.449176 | 2_4:+10266808 | None:intergenic |
| GGACTAAGGCTGAGCCTAGA+AGG | 0.451984 | 2_4:-10267012 | Msa0314500:CDS |
| AGATAACTGAAACCAACATT+GGG | 0.454313 | 2_4:-10266801 | Msa0314500:CDS |
| AACCATGGCAAGTGATTTAG+TGG | 0.455369 | 2_4:+10270756 | None:intergenic |
| AACTTCATGTTAATAATGTC+TGG | 0.460930 | 2_4:+10268396 | None:intergenic |
| TGTGCAGCTGCCGGAGTGGA+AGG | 0.461283 | 2_4:+10266640 | None:intergenic |
| GCTTACCTAGCCAAGGATGC+TGG | 0.461481 | 2_4:+10270640 | None:intergenic |
| CTTTGTAGATTATTCTGCTC+CGG | 0.465985 | 2_4:+10267813 | None:intergenic |
| GTTGGTTTGAACCGATCAAA+TGG | 0.470890 | 2_4:-10266858 | Msa0314500:CDS |
| ACCAACATTGGGGACCTCTC+TGG | 0.475602 | 2_4:-10266790 | Msa0314500:CDS |
| AAAGGGCCGCAAGATATTCC+TGG | 0.476025 | 2_4:-10266502 | Msa0314500:CDS |
| TGGCCTTGAATGATGAAGTC+AGG | 0.476306 | 2_4:-10270687 | Msa0314500:CDS |
| TTCTAGGCTCAGCCTTAGTC+CGG | 0.478380 | 2_4:+10267014 | None:intergenic |
| GCAGAATAATCTACAAAGAA+AGG | 0.478534 | 2_4:-10267808 | Msa0314500:CDS |
| AGACATTGAGAACTATGTTA+AGG | 0.483226 | 2_4:-10269484 | Msa0314500:CDS |
| TGCTCCCAAATGGCAAGGTC+CGG | 0.489992 | 2_4:-10266896 | Msa0314500:CDS |
| TGAGCAAAGTCATATTAAAT+GGG | 0.490628 | 2_4:-10268439 | Msa0314500:CDS |
| GCAAGCCTGTGACCGGACTA+AGG | 0.492394 | 2_4:-10267026 | Msa0314500:CDS |
| TCTCTTCTTGAAGGAGTACA+TGG | 0.494167 | 2_4:-10268360 | Msa0314500:CDS |
| TAGCCAAGCATTCTTTGCAC+AGG | 0.494522 | 2_4:-10266337 | Msa0314500:three_prime_UTR |
| TGGCCATAGGTGCTCCCAAA+TGG | 0.497053 | 2_4:-10266906 | Msa0314500:CDS |
| TTAGTTACAGGGGCTAAGCT+TGG | 0.503082 | 2_4:-10266472 | Msa0314500:CDS |
| TTCCCTGTGCAAAGAATGCT+TGG | 0.503602 | 2_4:+10266334 | None:intergenic |
| ATTGTCACTGGGGCCCAACT+CGG | 0.508327 | 2_4:-10266760 | Msa0314500:CDS |
| ACTAAATCACTTGCCATGGT+TGG | 0.510463 | 2_4:-10270754 | Msa0314500:CDS |
| GAATATTTCAATGAAAGGTC+AGG | 0.511169 | 2_4:-10270856 | Msa0314500:CDS |
| CGAAATCCCAAACGCCGAGT+TGG | 0.513349 | 2_4:+10266746 | None:intergenic |
| TGGAAAACTCGCGAAAATTG+TGG | 0.518519 | 2_4:-10266542 | Msa0314500:CDS |
| GCTATTGTTTCTAGTGTGAA+GGG | 0.519979 | 2_4:+10266356 | None:intergenic |
| TCTGATTTGTGTGCAGCTGC+CGG | 0.524876 | 2_4:+10266631 | None:intergenic |
| TGTTGCAGATGTAACAATAT+GGG | 0.528350 | 2_4:+10269566 | None:intergenic |
| CTCTTTGTACTTCAAAGCAG+CGG | 0.529325 | 2_4:+10269416 | None:intergenic |
| GAGAAGTTCTTCCATTTGAT+CGG | 0.529495 | 2_4:+10266847 | None:intergenic |
| GAGATAACTGAAACCAACAT+TGG | 0.530726 | 2_4:-10266802 | Msa0314500:CDS |
| CTCAGCCTTAGTCCGGTCAC+AGG | 0.530834 | 2_4:+10267021 | None:intergenic |
| ACCACATTGGGATGCACACA+TGG | 0.534167 | 2_4:-10266926 | Msa0314500:CDS |
| GTGCATCCCAATGTGGTTGG+AGG | 0.535892 | 2_4:+10266932 | None:intergenic |
| GATGCTGGATCCCAAGAGTA+AGG | 0.536433 | 2_4:+10270655 | None:intergenic |
| TGGCAGAATATTTCAATGAA+AGG | 0.536564 | 2_4:-10270861 | Msa0314500:CDS |
| GTTACATCTGCAACAGTTGG+TGG | 0.540314 | 2_4:-10269558 | Msa0314500:CDS |
| TACTGTAGGTCTTCAATAGG+AGG | 0.541171 | 2_4:+10267870 | None:intergenic |
| ACCAGAGAGGTCCCCAATGT+TGG | 0.547567 | 2_4:+10266789 | None:intergenic |
| GTTGGACGCAAGCCTGTGAC+CGG | 0.554152 | 2_4:-10267033 | Msa0314500:CDS |
| TTTAGTTGATGGTGATGCAA+TGG | 0.556791 | 2_4:-10266263 | Msa0314500:three_prime_UTR |
| TCTTTGTACTTCAAAGCAGC+GGG | 0.557262 | 2_4:+10269417 | None:intergenic |
| GGGATCCAGCATCCTTGGCT+AGG | 0.559891 | 2_4:-10270645 | Msa0314500:intron |
| AGACGGTGCTTCGTCATCAT+CGG | 0.560891 | 2_4:-10266611 | Msa0314500:CDS |
| GTGCAGACAAAGAAGATGAT+TGG | 0.561701 | 2_4:+10269508 | None:intergenic |
| TGTGTGCATCCCAATGTGGT+TGG | 0.562576 | 2_4:+10266929 | None:intergenic |
| TGGTCATTGGTTAGTTACAG+GGG | 0.562808 | 2_4:-10266482 | Msa0314500:CDS |
| ATTTGATCGGTTCAAACCAA+CGG | 0.563797 | 2_4:+10266860 | None:intergenic |
| TGGGATGCACACATGGCCAT+AGG | 0.574386 | 2_4:-10266919 | Msa0314500:CDS |
| CGGAGGAGCAAGACAGCCGT+TGG | 0.574725 | 2_4:-10266876 | Msa0314500:CDS |
| CCTTAGAGAAAAGTAGTTTG+AGG | 0.575804 | 2_4:+10266704 | None:intergenic |
| GAAGATAGTTCCGTCCACAT+TGG | 0.576959 | 2_4:-10266562 | Msa0314500:CDS |
| AGCCACTAAATCACTTGCCA+TGG | 0.581549 | 2_4:-10270758 | Msa0314500:CDS |
| TGCTTTGAAGTACAAAGAGA+AGG | 0.585123 | 2_4:-10269412 | Msa0314500:intron |
| TCCCAAATGGCAAGGTCCGG+AGG | 0.587700 | 2_4:-10266893 | Msa0314500:CDS |
| AAAATTAGCTTACCTAGCCA+AGG | 0.588224 | 2_4:+10270633 | None:intergenic |
| ACATGACAGAAATGTCGAAA+GGG | 0.593865 | 2_4:-10266519 | Msa0314500:CDS |
| CTATTGTTTCTAGTGTGAAG+GGG | 0.596042 | 2_4:+10266357 | None:intergenic |
| ATTGTTACATCTGCAACAGT+TGG | 0.597254 | 2_4:-10269561 | Msa0314500:CDS |
| CACGATAAGACGGTCAGTGT+GGG | 0.598843 | 2_4:-10266671 | Msa0314500:CDS |
| TCCTTCAAGAAGAGAAACGA+TGG | 0.600405 | 2_4:+10268368 | None:intergenic |
| CCTGTAACTAACCAATGACC+AGG | 0.600926 | 2_4:+10266484 | None:intergenic |
| GCAAAGTCATATTAAATGGG+TGG | 0.601409 | 2_4:-10268436 | Msa0314500:CDS |
| AGCCAAGCATTCTTTGCACA+GGG | 0.606581 | 2_4:-10266336 | Msa0314500:three_prime_UTR |
| TATGAATCAATAGTTTAGCA+AGG | 0.610403 | 2_4:+10266411 | None:intergenic |
| TTGTCATCGCAGGTAACAGT+TGG | 0.611875 | 2_4:-10267051 | Msa0314500:intron |
| GACATGACAGAAATGTCGAA+AGG | 0.612727 | 2_4:-10266520 | Msa0314500:CDS |
| GACCGTCTTATCGTGCACCC+TGG | 0.616200 | 2_4:+10266679 | None:intergenic |
| GGAAATCCAAGAAATACTGT+AGG | 0.618343 | 2_4:+10267856 | None:intergenic |
| AATAACTCGAGTTTGGGCGC+CGG | 0.628765 | 2_4:-10267832 | Msa0314500:CDS |
| GGATCATAACCCTTCCACTC+CGG | 0.636730 | 2_4:-10266650 | Msa0314500:CDS |
| GCACGATAAGACGGTCAGTG+TGG | 0.639402 | 2_4:-10266672 | Msa0314500:CDS |
| GTGCAGCTGCCGGAGTGGAA+GGG | 0.640888 | 2_4:+10266641 | None:intergenic |
| GCAGCTGCACACAAATCAGA+CGG | 0.644603 | 2_4:-10266628 | Msa0314500:CDS |
| ATAGGTGCTCCCAAATGGCA+AGG | 0.645874 | 2_4:-10266901 | Msa0314500:CDS |
| TACCAGGGTGCACGATAAGA+CGG | 0.647747 | 2_4:-10266681 | Msa0314500:CDS |
| AATCGGTGCAGTGCTTACAT+GGG | 0.651985 | 2_4:+10266825 | None:intergenic |
| CAATGACCAGGAATATCTTG+CGG | 0.654789 | 2_4:+10266496 | None:intergenic |
| ATAGAATTGAAGCTTCCAAG+TGG | 0.657356 | 2_4:+10270817 | None:intergenic |
| GCTGCAAATGAATTGCGAGT+CGG | 0.663551 | 2_4:+10266977 | None:intergenic |
| TTTGTGTGCAGCTGCCGGAG+TGG | 0.665993 | 2_4:+10266636 | None:intergenic |
| CCTTCAAGAAGAGAAACGAT+GGG | 0.671747 | 2_4:+10268369 | None:intergenic |
| GCCATGTGTGCATCCCAATG+TGG | 0.674737 | 2_4:+10266925 | None:intergenic |
| TGGTGTTCATATTGTCACTG+GGG | 0.695069 | 2_4:-10266770 | Msa0314500:CDS |
| ATGAGCATAGTGACATTACG+AGG | 0.705082 | 2_4:-10266190 | Msa0314500:three_prime_UTR |
| GATAACTGAAACCAACATTG+GGG | 0.738432 | 2_4:-10266800 | Msa0314500:CDS |
| TGACAATATGAACACCAGAG+AGG | 0.757497 | 2_4:+10266776 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTAACAAAACAAAATT+TGG | - | chr2_4:10266343-10266362 | Msa0314500:three_prime_UTR | 10.0% |
| !!! | AGTTTTTTTTTTTTTTTTGA+GGG | - | chr2_4:10267335-10267354 | Msa0314500:intron | 10.0% |
| !!! | ATTAAATTTTGTTGATTTAA+TGG | - | chr2_4:10270834-10270853 | Msa0314500:CDS | 10.0% |
| !!! | TTTTTTTATAGGAATTTTAG+TGG | + | chr2_4:10266624-10266643 | None:intergenic | 15.0% |
| !! | AAAAAATAAGATTAAGAATC+TGG | + | chr2_4:10267141-10267160 | None:intergenic | 15.0% |
| !!! | GAGTTTTTTTTTTTTTTTTG+AGG | - | chr2_4:10267334-10267353 | Msa0314500:intron | 15.0% |
| !!! | GTTTTTTTTTTTTTTTTGAG+GGG | - | chr2_4:10267336-10267355 | Msa0314500:intron | 15.0% |
| !! | CTTTGTAAAAATATTGATAT+TGG | - | chr2_4:10267937-10267956 | Msa0314500:intron | 15.0% |
| !! | TACAAATTCATATAATAACT+GGG | + | chr2_4:10268981-10269000 | None:intergenic | 15.0% |
| !!! | AATGTTAGCATAATTTTTTA+AGG | - | chr2_4:10269122-10269141 | Msa0314500:intron | 15.0% |
| !! | TGTTAAATATAGTAGAATTT+AGG | + | chr2_4:10269342-10269361 | None:intergenic | 15.0% |
| !! | AAATTCTACTATATTTAACA+TGG | - | chr2_4:10269342-10269361 | Msa0314500:intron | 15.0% |
| !!! | ATTACAAGTTTTATTTGAAT+TGG | - | chr2_4:10269547-10269566 | Msa0314500:CDS | 15.0% |
| !!! | ATTTTTAGTTATTTAGTTGA+TGG | - | chr2_4:10270776-10270795 | Msa0314500:CDS | 15.0% |
| !!! | GTTAATTTAACTTCAAATAG+TGG | + | chr2_4:10266332-10266351 | None:intergenic | 20.0% |
| !! | ACACTTAAGATATAATATCA+TGG | - | chr2_4:10266540-10266559 | Msa0314500:CDS | 20.0% |
| !!! | ATTTTAGTGGTTAATTTGTT+AGG | + | chr2_4:10266611-10266630 | None:intergenic | 20.0% |
| !!! | GCTGAAATTACTTTTTTTAT+AGG | + | chr2_4:10266635-10266654 | None:intergenic | 20.0% |
| !! | TTAATTAGTTAAACAACACA+AGG | + | chr2_4:10266787-10266806 | None:intergenic | 20.0% |
| !!! | TTTGAAAAGCTCTTTATTTT+AGG | + | chr2_4:10266943-10266962 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTGAGATTTTAAG+GGG | + | chr2_4:10267314-10267333 | None:intergenic | 20.0% |
| !!! | CTTTTCTTTTGAGATTTTAA+GGG | + | chr2_4:10267315-10267334 | None:intergenic | 20.0% |
| !!! | TCTTTTCTTTTGAGATTTTA+AGG | + | chr2_4:10267316-10267335 | None:intergenic | 20.0% |
| !!! | TTGTATATTTTCACAGTAAT+GGG | + | chr2_4:10267687-10267706 | None:intergenic | 20.0% |
| !! | TTCTGATTATTAATGAAACT+TGG | - | chr2_4:10267717-10267736 | Msa0314500:intron | 20.0% |
| !! | AATAGGTTTAAATGTGTAAT+TGG | + | chr2_4:10268195-10268214 | None:intergenic | 20.0% |
| !! | CTACAAATTCATATAATAAC+TGG | + | chr2_4:10268982-10269001 | None:intergenic | 20.0% |
| !! | CAGTTATTATATGAATTTGT+AGG | - | chr2_4:10268980-10268999 | Msa0314500:intron | 20.0% |
| !! | TTTGTCTGTTTAATATAAGA+GGG | + | chr2_4:10269160-10269179 | None:intergenic | 20.0% |
| !! | ATATCAGATTATGTCAAAAA+AGG | - | chr2_4:10269365-10269384 | Msa0314500:intron | 20.0% |
| !! | ACTCAAAGTTAAATGAATTA+TGG | - | chr2_4:10269505-10269524 | Msa0314500:CDS | 20.0% |
| !! | AAAGTTAAATGAATTATGGT+AGG | - | chr2_4:10269509-10269528 | Msa0314500:CDS | 20.0% |
| !! | AAGTTAAATGAATTATGGTA+GGG | - | chr2_4:10269510-10269529 | Msa0314500:CDS | 20.0% |
| !! | ATAGACTATAGATTATAACT+TGG | - | chr2_4:10269836-10269855 | Msa0314500:intron | 20.0% |
| !! | GGAAAAAAAACAAATTCAAA+GGG | + | chr2_4:10270675-10270694 | None:intergenic | 20.0% |
| ! | ATATATAGCAGTTTATGTTC+TGG | - | chr2_4:10266677-10266696 | Msa0314500:CDS | 25.0% |
| ! | TTCACAAAGAAATATTCAAG+GGG | + | chr2_4:10266844-10266863 | None:intergenic | 25.0% |
| ! | CTTCACAAAGAAATATTCAA+GGG | + | chr2_4:10266845-10266864 | None:intergenic | 25.0% |
| ! | ACTTCACAAAGAAATATTCA+AGG | + | chr2_4:10266846-10266865 | None:intergenic | 25.0% |
| ! | AGAAGAATAAAAAGGATGAT+TGG | + | chr2_4:10266909-10266928 | None:intergenic | 25.0% |
| !! | TCATCCTTTTTATTCTTCTT+AGG | - | chr2_4:10266910-10266929 | Msa0314500:CDS | 25.0% |
| ! | GTTTCCTAAGAAGAATAAAA+AGG | + | chr2_4:10266917-10266936 | None:intergenic | 25.0% |
| !! | ATCCTATTTGCTAGTTTATA+TGG | - | chr2_4:10267397-10267416 | Msa0314500:intron | 25.0% |
| !!! | CTCAGTTTTATTGAGAATTA+TGG | - | chr2_4:10267459-10267478 | Msa0314500:intron | 25.0% |
| ! | TTAAGGACATTGAAAATGAT+AGG | - | chr2_4:10267583-10267602 | Msa0314500:intron | 25.0% |
| !! | TGTATATTTTCACAGTAATG+GGG | + | chr2_4:10267686-10267705 | None:intergenic | 25.0% |
| !! | GTTGTATATTTTCACAGTAA+TGG | + | chr2_4:10267688-10267707 | None:intergenic | 25.0% |
| ! | TTAATAATCAGAAGCAGAAA+AGG | + | chr2_4:10267710-10267729 | None:intergenic | 25.0% |
| !!! | CAATATTTTTACAAAGTGCA+GGG | + | chr2_4:10268108-10268127 | None:intergenic | 25.0% |
| ! | CTTTGTAAAAATATTGCCAT+TGG | - | chr2_4:10267877-10267896 | Msa0314500:CDS | 25.0% |
| !!! | CACTTTTTTTTGTTTGACAT+TGG | - | chr2_4:10267906-10267925 | Msa0314500:intron | 25.0% |
| !!! | CAATATTTTTACAAAGTGCA+GGG | + | chr2_4:10268108-10268127 | None:intergenic | 25.0% |
| !!! | TCAATATTTTTACAAAGTGC+AGG | + | chr2_4:10267934-10267953 | None:intergenic | 25.0% |
| !! | CAAAATTTTTACAAAGTGCA+GGG | + | chr2_4:10267964-10267983 | None:intergenic | 25.0% |
| !!! | CAATTTTTTTACAAACTGCA+GGG | - | chr2_4:10268048-10268067 | Msa0314500:intron | 25.0% |
| ! | CTTTGTAAAAATATTGGCAT+TGG | + | chr2_4:10268104-10268123 | None:intergenic | 25.0% |
| !!! | CAATATTTTTACAAAGTGCA+GGG | - | chr2_4:10268108-10268127 | Msa0314500:intron | 25.0% |
| ! | TACACATTTAAACCTATTTC+TGG | - | chr2_4:10268197-10268216 | Msa0314500:intron | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+GGG | + | chr2_4:10268242-10268261 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | + | chr2_4:10268243-10268262 | None:intergenic | 25.0% |
| ! | TTGAGCAAAGTCATATTAAA+TGG | - | chr2_4:10268610-10268629 | Msa0314500:intron | 25.0% |
| ! | TGAGCAAAGTCATATTAAAT+GGG | - | chr2_4:10268611-10268630 | Msa0314500:intron | 25.0% |
| ! | AACTTCATGTTAATAATGTC+TGG | + | chr2_4:10268657-10268676 | None:intergenic | 25.0% |
| ! | TGATATTATAACTGATCCTA+GGG | + | chr2_4:10268842-10268861 | None:intergenic | 25.0% |
| ! | ATGATATTATAACTGATCCT+AGG | + | chr2_4:10268843-10268862 | None:intergenic | 25.0% |
| ! | TATAAACTGCAATATCAATC+AGG | - | chr2_4:10268874-10268893 | Msa0314500:intron | 25.0% |
| ! | AACTTTATGAATTTACGATG+AGG | - | chr2_4:10268917-10268936 | Msa0314500:intron | 25.0% |
| ! | GAATTTGTAGGAAAAAGTTA+TGG | - | chr2_4:10268992-10269011 | Msa0314500:intron | 25.0% |
| ! | TTGTCTGTTTAATATAAGAG+GGG | + | chr2_4:10269159-10269178 | None:intergenic | 25.0% |
| ! | GTTTGTCTGTTTAATATAAG+AGG | + | chr2_4:10269161-10269180 | None:intergenic | 25.0% |
| !! | GATTTTCAACAATAAGACAT+AGG | + | chr2_4:10269585-10269604 | None:intergenic | 25.0% |
| ! | TAGCAAATATGTGATAAATG+TGG | + | chr2_4:10269895-10269914 | None:intergenic | 25.0% |
| !!! | TTTGAGGTGTAATACATTTT+TGG | + | chr2_4:10270333-10270352 | None:intergenic | 25.0% |
| ! | AAAAAGGAAAAATTGTACTC+AGG | - | chr2_4:10270606-10270625 | Msa0314500:intron | 25.0% |
| ! | TATGAATCAATAGTTTAGCA+AGG | + | chr2_4:10270642-10270661 | None:intergenic | 25.0% |
| ! | AAAAAAACAAATTCAAAGGG+AGG | + | chr2_4:10270672-10270691 | None:intergenic | 25.0% |
| ! | GGGAAAAAAAACAAATTCAA+AGG | + | chr2_4:10270676-10270695 | None:intergenic | 25.0% |
| TGGCAGAATATTTCAATGAA+AGG | - | chr2_4:10266189-10266208 | Msa0314500:three_prime_UTR | 30.0% | |
| GAATATTTCAATGAAAGGTC+AGG | - | chr2_4:10266194-10266213 | Msa0314500:three_prime_UTR | 30.0% | |
| ATAGAAGGAAAAATTCCACT+TGG | - | chr2_4:10266218-10266237 | Msa0314500:three_prime_UTR | 30.0% | |
| AATTCTATGTTCAACTTCAC+TGG | - | chr2_4:10266248-10266267 | Msa0314500:three_prime_UTR | 30.0% | |
| ! | CTTTCTGCAGAAAATGATTT+TGG | - | chr2_4:10266466-10266485 | Msa0314500:CDS | 30.0% |
| GCATAAAATCTAAGAACATC+AGG | + | chr2_4:10266492-10266511 | None:intergenic | 30.0% | |
| TACACAGTCTTCTTCTAAAT+TGG | - | chr2_4:10266514-10266533 | Msa0314500:CDS | 30.0% | |
| !! | TTAGTGGTTAATTTGTTAGG+AGG | + | chr2_4:10266608-10266627 | None:intergenic | 30.0% |
| ! | TTTATGTTCTGGATTAGAAG+TGG | - | chr2_4:10266688-10266707 | Msa0314500:CDS | 30.0% |
| TTGGATCAATCAACTTAAGT+CGG | + | chr2_4:10267277-10267296 | None:intergenic | 30.0% | |
| !! | TTGAGATTTTAAGGGGAAAT+GGG | + | chr2_4:10267307-10267326 | None:intergenic | 30.0% |
| !! | TTTGAGATTTTAAGGGGAAA+TGG | + | chr2_4:10267308-10267327 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTTTGAGGGGAG+AGG | - | chr2_4:10267341-10267360 | Msa0314500:intron | 30.0% |
| GTCCATATAAACTAGCAAAT+AGG | + | chr2_4:10267402-10267421 | None:intergenic | 30.0% | |
| TCAATAAAACTGAGAAGCAA+GGG | + | chr2_4:10267453-10267472 | None:intergenic | 30.0% | |
| TGTTGCAGATGTAACAATAT+GGG | + | chr2_4:10267487-10267506 | None:intergenic | 30.0% | |
| TTAACATAGTTCTCAATGTC+TGG | + | chr2_4:10267567-10267586 | None:intergenic | 30.0% | |
| AGACATTGAGAACTATGTTA+AGG | - | chr2_4:10267566-10267585 | Msa0314500:intron | 30.0% | |
| !!! | CACTTTTTTTTGTTTGGCAT+TGG | - | chr2_4:10267846-10267865 | Msa0314500:CDS | 30.0% |
| !! | GCAATATTTTTACAAAGTGC+AGG | + | chr2_4:10267874-10267893 | None:intergenic | 30.0% |
| ! | GTCAAACAAAAAAAAGTGCA+GGG | + | chr2_4:10267904-10267923 | None:intergenic | 30.0% |
| ! | TGTCAAACAAAAAAAAGTGC+AGG | + | chr2_4:10267905-10267924 | None:intergenic | 30.0% |
| ! | CCAAAATTTTTACAAAGTGC+AGG | + | chr2_4:10267965-10267984 | None:intergenic | 30.0% |
| ! | CCTGCACTTTGTAAAAATTT+TGG | - | chr2_4:10267962-10267981 | Msa0314500:intron | 30.0% |
| !! | AAAAAATTGGTATTGATCCC+TGG | + | chr2_4:10268037-10268056 | None:intergenic | 30.0% |
| CCTGCAGTTTGTAAAAAAAT+TGG | + | chr2_4:10268050-10268069 | None:intergenic | 30.0% | |
| !!! | CCAATTTTTTTACAAACTGC+AGG | - | chr2_4:10268047-10268066 | Msa0314500:intron | 30.0% |
| !!! | CACTTTTTTTTGTTTGGCAT+TGG | + | chr2_4:10267846-10267865 | None:intergenic | 30.0% |
| CCTGCACTTTGTAAAAATAT+TGG | + | chr2_4:10267871-10267890 | None:intergenic | 30.0% | |
| !! | CCAATATTTTTACAAAGTGC+AGG | - | chr2_4:10268107-10268126 | Msa0314500:intron | 30.0% |
| !!! | CACTTTTTTTTGTTTGGCAT+TGG | + | chr2_4:10267846-10267865 | None:intergenic | 30.0% |
| ! | AGCATTTTCTATTGTCAGTT+TGG | + | chr2_4:10268475-10268494 | None:intergenic | 30.0% |
| !!! | ACAGTCATTTTTAGAAGAAG+AGG | - | chr2_4:10268576-10268595 | Msa0314500:intron | 30.0% |
| !! | TCATTTTTAGAAGAAGAGGA+GGG | - | chr2_4:10268580-10268599 | Msa0314500:intron | 30.0% |
| ! | AAAGTTGATCTTATTACCTC+TGG | - | chr2_4:10268783-10268802 | Msa0314500:intron | 30.0% |
| !! | CTATTTCATGAGTTGTTTTC+AGG | + | chr2_4:10269025-10269044 | None:intergenic | 30.0% |
| CTGAAAACAACTCATGAAAT+AGG | - | chr2_4:10269023-10269042 | Msa0314500:intron | 30.0% | |
| AAGAAATTGAGCTTGAAAAC+TGG | - | chr2_4:10269056-10269075 | Msa0314500:intron | 30.0% | |
| AGAAATTGAGCTTGAAAACT+GGG | - | chr2_4:10269057-10269076 | Msa0314500:intron | 30.0% | |
| ATACTAGACATGACAATTTC+TGG | - | chr2_4:10269086-10269105 | Msa0314500:intron | 30.0% | |
| AAATACTGTAGGTCTTCAAT+AGG | + | chr2_4:10269186-10269205 | None:intergenic | 30.0% | |
| ATTTCCAAATAACTCGAGTT+TGG | - | chr2_4:10269211-10269230 | Msa0314500:intron | 30.0% | |
| TTTCCAAATAACTCGAGTTT+GGG | - | chr2_4:10269212-10269231 | Msa0314500:intron | 30.0% | |
| GCAGAATAATCTACAAAGAA+AGG | - | chr2_4:10269242-10269261 | Msa0314500:intron | 30.0% | |
| ATAAACACATGAGTCAGTAT+CGG | - | chr2_4:10269694-10269713 | Msa0314500:intron | 30.0% | |
| TTGGTTTCAGTTATCTCAAT+CGG | + | chr2_4:10270245-10270264 | None:intergenic | 30.0% | |
| AGATAACTGAAACCAACATT+GGG | - | chr2_4:10270249-10270268 | Msa0314500:intron | 30.0% | |
| ATAGAATTGAAGCTTCCAAG+TGG | + | chr2_4:10266236-10266255 | None:intergenic | 35.0% | |
| TGGAATGAAAAATCCAACCA+TGG | + | chr2_4:10266312-10266331 | None:intergenic | 35.0% | |
| ! | AAAATTAGCTTACCTAGCCA+AGG | + | chr2_4:10266420-10266439 | None:intergenic | 35.0% |
| !! | GGGGAAATTTGTTAACAACA+GGG | + | chr2_4:10266584-10266603 | None:intergenic | 35.0% |
| !! | AGGGGAAATTTGTTAACAAC+AGG | + | chr2_4:10266585-10266604 | None:intergenic | 35.0% |
| !! | TGGTTAATTTGTTAGGAGGA+GGG | + | chr2_4:10266604-10266623 | None:intergenic | 35.0% |
| ACTAAGAGTTATAGAGTCTC+AGG | - | chr2_4:10266868-10266887 | Msa0314500:CDS | 35.0% | |
| GAACAATTCAGACAAAGTTG+TGG | + | chr2_4:10266976-10266995 | None:intergenic | 35.0% | |
| CAACTTTGTCTGAATTGTTC+AGG | - | chr2_4:10266976-10266995 | Msa0314500:CDS | 35.0% | |
| CTTACGCATCTAAAAGACAA+TGG | - | chr2_4:10267194-10267213 | Msa0314500:intron | 35.0% | |
| AGGGGAAATGGGAAAAAAAT+TGG | + | chr2_4:10267296-10267315 | None:intergenic | 35.0% | |
| CTCAATAAAACTGAGAAGCA+AGG | + | chr2_4:10267454-10267473 | None:intergenic | 35.0% | |
| CTGTTGCAGATGTAACAATA+TGG | + | chr2_4:10267488-10267507 | None:intergenic | 35.0% | |
| ATTGTTACATCTGCAACAGT+TGG | - | chr2_4:10267489-10267508 | Msa0314500:intron | 35.0% | |
| CTTGATGCAAAAAACACATC+AGG | - | chr2_4:10267609-10267628 | Msa0314500:intron | 35.0% | |
| !! | TGCTTTGAAGTACAAAGAGA+AGG | - | chr2_4:10267638-10267657 | Msa0314500:intron | 35.0% |
| GAGAAGGTTAGTATTAAGAG+TGG | - | chr2_4:10267654-10267673 | Msa0314500:intron | 35.0% | |
| !! | TAGCCTTGTGCATTTATTTC+TGG | - | chr2_4:10267767-10267786 | Msa0314500:CDS | 35.0% |
| ! | AGCCTTGTGCATTTATTTCT+GGG | - | chr2_4:10267768-10267787 | Msa0314500:CDS | 35.0% |
| CTGGGGTTTAAATGTGTAAT+TGG | - | chr2_4:10267786-10267805 | Msa0314500:CDS | 35.0% | |
| CAAAATCTGTTGAAACTGCA+AGG | + | chr2_4:10267813-10267832 | None:intergenic | 35.0% | |
| ! | CTTGCAGTTTCAACAGATTT+TGG | - | chr2_4:10267811-10267830 | Msa0314500:CDS | 35.0% |
| !! | GTTTCAACAGATTTTGGCAT+TGG | - | chr2_4:10267817-10267836 | Msa0314500:CDS | 35.0% |
| !!! | TCCCTGCACTTTTTTTTGTT+TGG | - | chr2_4:10267840-10267859 | Msa0314500:CDS | 35.0% |
| ! | GCCAAACAAAAAAAAGTGCA+GGG | + | chr2_4:10268077-10268096 | None:intergenic | 35.0% |
| ! | TGCCAAACAAAAAAAAGTGC+AGG | + | chr2_4:10268076-10268095 | None:intergenic | 35.0% |
| ACCAATACCATTATTTGTCC+AGG | - | chr2_4:10268016-10268035 | Msa0314500:intron | 35.0% | |
| CCAATACCATTATTTGTCCA+GGG | - | chr2_4:10268017-10268036 | Msa0314500:intron | 35.0% | |
| ATTGATCCCTGGACAAATAA+TGG | + | chr2_4:10268026-10268045 | None:intergenic | 35.0% | |
| ! | TGCCAAACAAAAAAAAGTGC+AGG | - | chr2_4:10268076-10268095 | Msa0314500:intron | 35.0% |
| ! | GCCAAACAAAAAAAAGTGCA+GGG | - | chr2_4:10268077-10268096 | Msa0314500:intron | 35.0% |
| !!! | TCCCTGCACTTTTTTTTGTT+TGG | + | chr2_4:10267840-10267859 | None:intergenic | 35.0% |
| ! | TGCCAAACAAAAAAAAGTGC+AGG | - | chr2_4:10268076-10268095 | Msa0314500:intron | 35.0% |
| ! | GCCAAACAAAAAAAAGTGCA+GGG | - | chr2_4:10268077-10268096 | Msa0314500:intron | 35.0% |
| !!! | TCCCTGCACTTTTTTTTGTT+TGG | + | chr2_4:10267840-10267859 | None:intergenic | 35.0% |
| !! | CTTTCAACAGATTTTGGCAT+TGG | + | chr2_4:10268164-10268183 | None:intergenic | 35.0% |
| ! | CAAAATCTGTTGAAAGTGCA+GGG | - | chr2_4:10268168-10268187 | Msa0314500:intron | 35.0% |
| AGAGTGTAATTGCCAGAAAT+AGG | + | chr2_4:10268212-10268231 | None:intergenic | 35.0% | |
| TATCTACTGACATATGCACT+TGG | + | chr2_4:10268435-10268454 | None:intergenic | 35.0% | |
| ! | TCTTTTCATTATGTCACTGC+AGG | - | chr2_4:10268548-10268567 | Msa0314500:intron | 35.0% |
| !!! | GTCATTTTTAGAAGAAGAGG+AGG | - | chr2_4:10268579-10268598 | Msa0314500:intron | 35.0% |
| !! | CATTTTTAGAAGAAGAGGAG+GGG | - | chr2_4:10268581-10268600 | Msa0314500:intron | 35.0% |
| GCAAAGTCATATTAAATGGG+TGG | - | chr2_4:10268614-10268633 | Msa0314500:intron | 35.0% | |
| ATGGGTGGAAACTGTAAAAT+TGG | - | chr2_4:10268629-10268648 | Msa0314500:intron | 35.0% | |
| AACTTTGCAGCAATAGTGAT+TGG | + | chr2_4:10268769-10268788 | None:intergenic | 35.0% | |
| TAAATGTCAGCTGCATGTTT+AGG | - | chr2_4:10268952-10268971 | Msa0314500:intron | 35.0% | |
| AAATGTCAGCTGCATGTTTA+GGG | - | chr2_4:10268953-10268972 | Msa0314500:intron | 35.0% | |
| TGAAGACCTACAGTATTTCT+TGG | - | chr2_4:10269188-10269207 | Msa0314500:intron | 35.0% | |
| GGAAATCCAAGAAATACTGT+AGG | + | chr2_4:10269197-10269216 | None:intergenic | 35.0% | |
| CTTTGTAGATTATTCTGCTC+CGG | + | chr2_4:10269240-10269259 | None:intergenic | 35.0% | |
| AACTGAAGAGATTGACAAAC+AGG | + | chr2_4:10269270-10269289 | None:intergenic | 35.0% | |
| ATCTCTTCAGTTCAGCTTAA+TGG | - | chr2_4:10269278-10269297 | Msa0314500:intron | 35.0% | |
| TCTCTTCAGTTCAGCTTAAT+GGG | - | chr2_4:10269279-10269298 | Msa0314500:intron | 35.0% | |
| TTAGGAAACAATACCTGATC+TGG | + | chr2_4:10269324-10269343 | None:intergenic | 35.0% | |
| !! | GATTTTTCAGAAACCTCAGA+CGG | - | chr2_4:10269471-10269490 | Msa0314500:CDS | 35.0% |
| CTATGTGTTAGAGTTGTGTT+TGG | + | chr2_4:10269655-10269674 | None:intergenic | 35.0% | |
| ! | GCATTGATACTTGAGATTGA+AGG | + | chr2_4:10269732-10269751 | None:intergenic | 35.0% |
| ! | CTCCTATTTTATCTGTGCAT+CGG | + | chr2_4:10269765-10269784 | None:intergenic | 35.0% |
| GATGCACAGATAAAATAGGA+GGG | - | chr2_4:10269764-10269783 | Msa0314500:intron | 35.0% | |
| ! | TAGTTTGTGTAGTTGAGTTC+AGG | - | chr2_4:10269867-10269886 | Msa0314500:intron | 35.0% |
| ! | ATTTGATCGGTTCAAACCAA+CGG | + | chr2_4:10270193-10270212 | None:intergenic | 35.0% |
| GAGAAGTTCTTCCATTTGAT+CGG | + | chr2_4:10270206-10270225 | None:intergenic | 35.0% | |
| GAGATAACTGAAACCAACAT+TGG | - | chr2_4:10270248-10270267 | Msa0314500:intron | 35.0% | |
| GATAACTGAAACCAACATTG+GGG | - | chr2_4:10270250-10270269 | Msa0314500:intron | 35.0% | |
| CCTTAGAGAAAAGTAGTTTG+AGG | + | chr2_4:10270349-10270368 | None:intergenic | 35.0% | |
| !! | CCTCAAACTACTTTTCTCTA+AGG | - | chr2_4:10270346-10270365 | Msa0314500:intron | 35.0% |
| !!! | TACTTTTCTCTAAGGTACCA+GGG | - | chr2_4:10270354-10270373 | Msa0314500:intron | 35.0% |
| ACATGACAGAAATGTCGAAA+GGG | - | chr2_4:10270531-10270550 | Msa0314500:intron | 35.0% | |
| !! | CTATTGTTTCTAGTGTGAAG+GGG | + | chr2_4:10270696-10270715 | None:intergenic | 35.0% |
| !! | GCTATTGTTTCTAGTGTGAA+GGG | + | chr2_4:10270697-10270716 | None:intergenic | 35.0% |
| !! | TTTAGTTGATGGTGATGCAA+TGG | - | chr2_4:10270787-10270806 | Msa0314500:CDS | 35.0% |
| AATGAAAGGTCAGGCATAGA+AGG | - | chr2_4:10266203-10266222 | Msa0314500:three_prime_UTR | 40.0% | |
| AACCATGGCAAGTGATTTAG+TGG | + | chr2_4:10266297-10266316 | None:intergenic | 40.0% | |
| ACTAAATCACTTGCCATGGT+TGG | - | chr2_4:10266296-10266315 | Msa0314500:three_prime_UTR | 40.0% | |
| !! | GGTTAATTTGTTAGGAGGAG+GGG | + | chr2_4:10266603-10266622 | None:intergenic | 40.0% |
| !! | GTGGTTAATTTGTTAGGAGG+AGG | + | chr2_4:10266605-10266624 | None:intergenic | 40.0% |
| ! | TGTTCTGGATTAGAAGTGGT+TGG | - | chr2_4:10266692-10266711 | Msa0314500:CDS | 40.0% |
| CAGACAAAGTTGTGGTCATT+TGG | + | chr2_4:10266968-10266987 | None:intergenic | 40.0% | |
| GATGATAACACAAAAGCTCC+TGG | - | chr2_4:10267015-10267034 | Msa0314500:CDS | 40.0% | |
| ATAACACAAAAGCTCCTGGT+TGG | - | chr2_4:10267019-10267038 | Msa0314500:CDS | 40.0% | |
| ! | GGACAGAGTCAAGTTCTAAT+CGG | - | chr2_4:10267418-10267437 | Msa0314500:intron | 40.0% |
| GTGCAGACAAAGAAGATGAT+TGG | + | chr2_4:10267545-10267564 | None:intergenic | 40.0% | |
| TCTTTGTACTTCAAAGCAGC+GGG | + | chr2_4:10267636-10267655 | None:intergenic | 40.0% | |
| CTCTTTGTACTTCAAAGCAG+CGG | + | chr2_4:10267637-10267656 | None:intergenic | 40.0% | |
| !! | TTTTCACAGTAATGGGGAAG+AGG | + | chr2_4:10267680-10267699 | None:intergenic | 40.0% |
| !! | GCCTTGTGCATTTATTTCTG+GGG | - | chr2_4:10267769-10267788 | Msa0314500:CDS | 40.0% |
| ACCCCAGAAATAAATGCACA+AGG | + | chr2_4:10267773-10267792 | None:intergenic | 40.0% | |
| ! | AAAAAAAGTGCAGGGACCAA+TGG | + | chr2_4:10268085-10268104 | None:intergenic | 40.0% |
| CCCTGGACAAATAATGGTAT+TGG | + | chr2_4:10268020-10268039 | None:intergenic | 40.0% | |
| ! | CCTGCACTTTCAACAGATTT+TGG | + | chr2_4:10268170-10268189 | None:intergenic | 40.0% |
| ! | CCAAAATCTGTTGAAAGTGC+AGG | - | chr2_4:10268167-10268186 | Msa0314500:intron | 40.0% |
| CACTCTATTTATGCCCTGTT+TGG | - | chr2_4:10268226-10268245 | Msa0314500:intron | 40.0% | |
| TGACATATGCACTTGGAGAA+TGG | + | chr2_4:10268428-10268447 | None:intergenic | 40.0% | |
| CCTTCAAGAAGAGAAACGAT+GGG | + | chr2_4:10268684-10268703 | None:intergenic | 40.0% | |
| TCCTTCAAGAAGAGAAACGA+TGG | + | chr2_4:10268685-10268704 | None:intergenic | 40.0% | |
| ! | TCTCTTCTTGAAGGAGTACA+TGG | - | chr2_4:10268690-10268709 | Msa0314500:intron | 40.0% |
| ! | AGTACATGGCGTAAAGCTTT+TGG | - | chr2_4:10268704-10268723 | Msa0314500:intron | 40.0% |
| CTCTGGCAATAGTTATGCTA+GGG | - | chr2_4:10268800-10268819 | Msa0314500:intron | 40.0% | |
| TACTGTAGGTCTTCAATAGG+AGG | + | chr2_4:10269183-10269202 | None:intergenic | 40.0% | |
| TCTGGACTGACAAAAAGCTT+AGG | + | chr2_4:10269306-10269325 | None:intergenic | 40.0% | |
| TGTATGTGTCAGTGCTTCAT+AGG | + | chr2_4:10269626-10269645 | None:intergenic | 40.0% | |
| CAACTCTAACACATAGACAC+TGG | - | chr2_4:10269659-10269678 | Msa0314500:intron | 40.0% | |
| ! | CTTGAGATTGAAGGTGTGTT+TGG | + | chr2_4:10269723-10269742 | None:intergenic | 40.0% |
| GTCCGATGCACAGATAAAAT+AGG | - | chr2_4:10269760-10269779 | Msa0314500:intron | 40.0% | |
| CGATGCACAGATAAAATAGG+AGG | - | chr2_4:10269763-10269782 | Msa0314500:intron | 40.0% | |
| ! | AATGTGGTTGGAGGTTTTTC+GGG | + | chr2_4:10270112-10270131 | None:intergenic | 40.0% |
| ! | CAATGTGGTTGGAGGTTTTT+CGG | + | chr2_4:10270113-10270132 | None:intergenic | 40.0% |
| GAAAAACCTCCAACCACATT+GGG | - | chr2_4:10270112-10270131 | Msa0314500:intron | 40.0% | |
| !! | GTTGGTTTGAACCGATCAAA+TGG | - | chr2_4:10270192-10270211 | Msa0314500:intron | 40.0% |
| TGACAATATGAACACCAGAG+AGG | + | chr2_4:10270277-10270296 | None:intergenic | 40.0% | |
| TCTGGTGTTCATATTGTCAC+TGG | - | chr2_4:10270278-10270297 | Msa0314500:intron | 40.0% | |
| CTGGTGTTCATATTGTCACT+GGG | - | chr2_4:10270279-10270298 | Msa0314500:intron | 40.0% | |
| TGGTGTTCATATTGTCACTG+GGG | - | chr2_4:10270280-10270299 | Msa0314500:intron | 40.0% | |
| !!! | CTACTTTTCTCTAAGGTACC+AGG | - | chr2_4:10270353-10270372 | Msa0314500:intron | 40.0% |
| GAAAACCACTGACGAGAAAA+AGG | - | chr2_4:10270466-10270485 | Msa0314500:intron | 40.0% | |
| ! | ATCTTCCTTTTTCTCGTCAG+TGG | + | chr2_4:10270474-10270493 | None:intergenic | 40.0% |
| ! | TTTTCGCGAGTTTTCCAATG+TGG | + | chr2_4:10270505-10270524 | None:intergenic | 40.0% |
| TGGAAAACTCGCGAAAATTG+TGG | - | chr2_4:10270508-10270527 | Msa0314500:intron | 40.0% | |
| GACATGACAGAAATGTCGAA+AGG | - | chr2_4:10270530-10270549 | Msa0314500:intron | 40.0% | |
| CAATGACCAGGAATATCTTG+CGG | + | chr2_4:10270557-10270576 | None:intergenic | 40.0% | |
| ! | CTGGTCATTGGTTAGTTACA+GGG | - | chr2_4:10270567-10270586 | Msa0314500:intron | 40.0% |
| ! | TGGTCATTGGTTAGTTACAG+GGG | - | chr2_4:10270568-10270587 | Msa0314500:intron | 40.0% |
| GCTAAGCTTGGAGTAGAAAA+AGG | - | chr2_4:10270590-10270609 | Msa0314500:intron | 40.0% | |
| !! | GGCTATTGTTTCTAGTGTGA+AGG | + | chr2_4:10270698-10270717 | None:intergenic | 40.0% |
| ATGAGCATAGTGACATTACG+AGG | - | chr2_4:10270860-10270879 | Msa0314500:CDS | 40.0% | |
| !! | CAACTTCACTGGCTCTTCAA+TGG | - | chr2_4:10266259-10266278 | Msa0314500:three_prime_UTR | 45.0% |
| AGCCACTAAATCACTTGCCA+TGG | - | chr2_4:10266292-10266311 | Msa0314500:three_prime_UTR | 45.0% | |
| ! | TGGCCTTGAATGATGAAGTC+AGG | - | chr2_4:10266363-10266382 | Msa0314500:three_prime_UTR | 45.0% |
| !!! | TTTTTTTGAGGGGAGAGGAG+AGG | - | chr2_4:10267346-10267365 | Msa0314500:intron | 45.0% |
| !!! | TTTTTTGAGGGGAGAGGAGA+GGG | - | chr2_4:10267347-10267366 | Msa0314500:intron | 45.0% |
| GTTACATCTGCAACAGTTGG+TGG | - | chr2_4:10267492-10267511 | Msa0314500:intron | 45.0% | |
| GCAGAGACGTCGTGTATATT+AGG | - | chr2_4:10267514-10267533 | Msa0314500:intron | 45.0% | |
| CCACGTGGCATGAAATGATT+GGG | + | chr2_4:10267995-10268014 | None:intergenic | 45.0% | |
| !! | ATAATGGTATTGGTGCCACG+TGG | + | chr2_4:10268010-10268029 | None:intergenic | 45.0% |
| CTTGGAGAATGGAGACTGTT+TGG | + | chr2_4:10268417-10268436 | None:intergenic | 45.0% | |
| ATTAGTAGCGTGACAGTCTG+AGG | + | chr2_4:10268515-10268534 | None:intergenic | 45.0% | |
| CCCATCGTTTCTCTTCTTGA+AGG | - | chr2_4:10268681-10268700 | Msa0314500:intron | 45.0% | |
| CCTAGCATAACTATTGCCAG+AGG | + | chr2_4:10268802-10268821 | None:intergenic | 45.0% | |
| CCTCTGGCAATAGTTATGCT+AGG | - | chr2_4:10268799-10268818 | Msa0314500:intron | 45.0% | |
| TAATGAGCTCATTCAGCCCT+AGG | - | chr2_4:10268823-10268842 | Msa0314500:intron | 45.0% | |
| ! | GCTTTTTGTCAGTCCAGATC+AGG | - | chr2_4:10269308-10269327 | Msa0314500:intron | 45.0% |
| GTGTTACAATGAACCGTCTG+AGG | + | chr2_4:10269487-10269506 | None:intergenic | 45.0% | |
| CTCTAGACTACAAGTGAGTG+AGG | - | chr2_4:10269964-10269983 | Msa0314500:intron | 45.0% | |
| TTACCTGCGATGACAAGTCA+TGG | + | chr2_4:10269995-10270014 | None:intergenic | 45.0% | |
| TTGTCATCGCAGGTAACAGT+TGG | - | chr2_4:10269999-10270018 | Msa0314500:intron | 45.0% | |
| ! | GGTTCTGTTTGTTGCCTTCT+AGG | + | chr2_4:10270055-10270074 | None:intergenic | 45.0% |
| GCTGCAAATGAATTGCGAGT+CGG | + | chr2_4:10270076-10270095 | None:intergenic | 45.0% | |
| CGAAAAACCTCCAACCACAT+TGG | - | chr2_4:10270111-10270130 | Msa0314500:intron | 45.0% | |
| AATCGGTGCAGTGCTTACAT+GGG | + | chr2_4:10270228-10270247 | None:intergenic | 45.0% | |
| GAAGATAGTTCCGTCCACAT+TGG | - | chr2_4:10270488-10270507 | Msa0314500:intron | 45.0% | |
| CGCAAGATATTCCTGGTCAT+TGG | - | chr2_4:10270555-10270574 | Msa0314500:intron | 45.0% | |
| CCTGTAACTAACCAATGACC+AGG | + | chr2_4:10270569-10270588 | None:intergenic | 45.0% | |
| ! | CCTGGTCATTGGTTAGTTAC+AGG | - | chr2_4:10270566-10270585 | Msa0314500:intron | 45.0% |
| TTAGTTACAGGGGCTAAGCT+TGG | - | chr2_4:10270578-10270597 | Msa0314500:intron | 45.0% | |
| TAGCCAAGCATTCTTTGCAC+AGG | - | chr2_4:10270713-10270732 | Msa0314500:CDS | 45.0% | |
| AGCCAAGCATTCTTTGCACA+GGG | - | chr2_4:10270714-10270733 | Msa0314500:CDS | 45.0% | |
| TTCCCTGTGCAAAGAATGCT+TGG | + | chr2_4:10270719-10270738 | None:intergenic | 45.0% | |
| GCGCCTGACTTCATCATTCA+AGG | + | chr2_4:10266369-10266388 | None:intergenic | 50.0% | |
| GATGCTGGATCCCAAGAGTA+AGG | + | chr2_4:10266398-10266417 | None:intergenic | 50.0% | |
| TGTGTTTGTCTCAGCCAACC+AGG | + | chr2_4:10267036-10267055 | None:intergenic | 50.0% | |
| !! | TTTTTGAGGGGAGAGGAGAG+GGG | - | chr2_4:10267348-10267367 | Msa0314500:intron | 50.0% |
| CCCAATCATTTCATGCCACG+TGG | - | chr2_4:10267992-10268011 | Msa0314500:intron | 50.0% | |
| GCCACGTGGCATGAAATGAT+TGG | + | chr2_4:10267996-10268015 | None:intergenic | 50.0% | |
| GCGCCCAAACTCGAGTTATT+TGG | + | chr2_4:10269218-10269237 | None:intergenic | 50.0% | |
| AATAACTCGAGTTTGGGCGC+CGG | - | chr2_4:10269218-10269237 | Msa0314500:intron | 50.0% | |
| ! | ACACCATGACTTGTCATCGC+AGG | - | chr2_4:10269989-10270008 | Msa0314500:intron | 50.0% |
| TTCTAGGCTCAGCCTTAGTC+CGG | + | chr2_4:10270039-10270058 | None:intergenic | 50.0% | |
| TGTGTGCATCCCAATGTGGT+TGG | + | chr2_4:10270124-10270143 | None:intergenic | 50.0% | |
| ACCACATTGGGATGCACACA+TGG | - | chr2_4:10270124-10270143 | Msa0314500:intron | 50.0% | |
| !! | TTGCCATTTGGGAGCACCTA+TGG | + | chr2_4:10270150-10270169 | None:intergenic | 50.0% |
| ATAGGTGCTCCCAAATGGCA+AGG | - | chr2_4:10270149-10270168 | Msa0314500:intron | 50.0% | |
| CAATCGGTGCAGTGCTTACA+TGG | + | chr2_4:10270229-10270248 | None:intergenic | 50.0% | |
| GAAATCCCAAACGCCGAGTT+GGG | + | chr2_4:10270306-10270325 | None:intergenic | 50.0% | |
| ! | CAACTCGGCGTTTGGGATTT+CGG | - | chr2_4:10270305-10270324 | Msa0314500:intron | 50.0% |
| TACCAGGGTGCACGATAAGA+CGG | - | chr2_4:10270369-10270388 | Msa0314500:intron | 50.0% | |
| CACGATAAGACGGTCAGTGT+GGG | - | chr2_4:10270379-10270398 | Msa0314500:intron | 50.0% | |
| GGATCATAACCCTTCCACTC+CGG | - | chr2_4:10270400-10270419 | Msa0314500:intron | 50.0% | |
| ! | TCTGATTTGTGTGCAGCTGC+CGG | + | chr2_4:10270422-10270441 | None:intergenic | 50.0% |
| GCAGCTGCACACAAATCAGA+CGG | - | chr2_4:10270422-10270441 | Msa0314500:intron | 50.0% | |
| AGACGGTGCTTCGTCATCAT+CGG | - | chr2_4:10270439-10270458 | Msa0314500:intron | 50.0% | |
| ! | CGCGAGTTTTCCAATGTGGA+CGG | + | chr2_4:10270501-10270520 | None:intergenic | 50.0% |
| AAAGGGCCGCAAGATATTCC+TGG | - | chr2_4:10270548-10270567 | Msa0314500:intron | 50.0% | |
| GCGCGCTGTTCCTTACTCTT+GGG | - | chr2_4:10266385-10266404 | Msa0314500:three_prime_UTR | 55.0% | |
| CTCTTGGGATCCAGCATCCT+TGG | - | chr2_4:10266400-10266419 | Msa0314500:exon | 55.0% | |
| GCTTACCTAGCCAAGGATGC+TGG | + | chr2_4:10266413-10266432 | None:intergenic | 55.0% | |
| GGACTAAGGCTGAGCCTAGA+AGG | - | chr2_4:10270038-10270057 | Msa0314500:intron | 55.0% | |
| GTGCATCCCAATGTGGTTGG+AGG | + | chr2_4:10270121-10270140 | None:intergenic | 55.0% | |
| GCCATGTGTGCATCCCAATG+TGG | + | chr2_4:10270128-10270147 | None:intergenic | 55.0% | |
| TGGGATGCACACATGGCCAT+AGG | - | chr2_4:10270131-10270150 | Msa0314500:intron | 55.0% | |
| TGGCCATAGGTGCTCCCAAA+TGG | - | chr2_4:10270144-10270163 | Msa0314500:intron | 55.0% | |
| TGCTCCCAAATGGCAAGGTC+CGG | - | chr2_4:10270154-10270173 | Msa0314500:intron | 55.0% | |
| ! | TCCTCCGGACCTTGCCATTT+GGG | + | chr2_4:10270161-10270180 | None:intergenic | 55.0% |
| ACCAACATTGGGGACCTCTC+TGG | - | chr2_4:10270260-10270279 | Msa0314500:intron | 55.0% | |
| ACCAGAGAGGTCCCCAATGT+TGG | + | chr2_4:10270264-10270283 | None:intergenic | 55.0% | |
| ATTGTCACTGGGGCCCAACT+CGG | - | chr2_4:10270290-10270309 | Msa0314500:intron | 55.0% | |
| CGAAATCCCAAACGCCGAGT+TGG | + | chr2_4:10270307-10270326 | None:intergenic | 55.0% | |
| GCACGATAAGACGGTCAGTG+TGG | - | chr2_4:10270378-10270397 | Msa0314500:intron | 55.0% | |
| GGCGCGCTGTTCCTTACTCT+TGG | - | chr2_4:10266384-10266403 | Msa0314500:three_prime_UTR | 60.0% | |
| GGGATCCAGCATCCTTGGCT+AGG | - | chr2_4:10266405-10266424 | Msa0314500:exon | 60.0% | |
| GTTGGACGCAAGCCTGTGAC+CGG | - | chr2_4:10270017-10270036 | Msa0314500:intron | 60.0% | |
| GCAAGCCTGTGACCGGACTA+AGG | - | chr2_4:10270024-10270043 | Msa0314500:intron | 60.0% | |
| CTCAGCCTTAGTCCGGTCAC+AGG | + | chr2_4:10270032-10270051 | None:intergenic | 60.0% | |
| TCCCAAATGGCAAGGTCCGG+AGG | - | chr2_4:10270157-10270176 | Msa0314500:intron | 60.0% | |
| CTCCTCCGGACCTTGCCATT+TGG | + | chr2_4:10270162-10270181 | None:intergenic | 60.0% | |
| CAACGGCTGTCTTGCTCCTC+CGG | + | chr2_4:10270176-10270195 | None:intergenic | 60.0% | |
| GACCGTCTTATCGTGCACCC+TGG | + | chr2_4:10270374-10270393 | None:intergenic | 60.0% | |
| TTTGTGTGCAGCTGCCGGAG+TGG | + | chr2_4:10270417-10270436 | None:intergenic | 60.0% | |
| CGGAGGAGCAAGACAGCCGT+TGG | - | chr2_4:10270174-10270193 | Msa0314500:intron | 65.0% | |
| TGGGGCCCAACTCGGCGTTT+GGG | - | chr2_4:10270298-10270317 | Msa0314500:intron | 65.0% | |
| GTGCAGCTGCCGGAGTGGAA+GGG | + | chr2_4:10270412-10270431 | None:intergenic | 65.0% | |
| TGTGCAGCTGCCGGAGTGGA+AGG | + | chr2_4:10270413-10270432 | None:intergenic | 65.0% | |
| CTGGGGCCCAACTCGGCGTT+TGG | - | chr2_4:10270297-10270316 | Msa0314500:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 10266188 | 10270884 | 10266188 | ID=Msa0314500;Name=Msa0314500 |
| chr2_4 | mRNA | 10266188 | 10270884 | 10266188 | ID=Msa0314500-mRNA-1;Parent=Msa0314500;Name=Msa0314500-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|1|0.8|1|1|1|5|229|472 |
| chr2_4 | exon | 10266188 | 10267061 | 10266188 | ID=Msa0314500-mRNA-1:exon:3943;Parent=Msa0314500-mRNA-1 |
| chr2_4 | exon | 10267743 | 10267897 | 10267743 | ID=Msa0314500-mRNA-1:exon:3942;Parent=Msa0314500-mRNA-1 |
| chr2_4 | exon | 10268319 | 10268502 | 10268319 | ID=Msa0314500-mRNA-1:exon:3941;Parent=Msa0314500-mRNA-1 |
| chr2_4 | exon | 10269413 | 10269608 | 10269413 | ID=Msa0314500-mRNA-1:exon:3940;Parent=Msa0314500-mRNA-1 |
| chr2_4 | exon | 10270646 | 10270884 | 10270646 | ID=Msa0314500-mRNA-1:exon:3939;Parent=Msa0314500-mRNA-1 |
| chr2_4 | CDS | 10270646 | 10270884 | 10270646 | ID=Msa0314500-mRNA-1:cds;Parent=Msa0314500-mRNA-1 |
| chr2_4 | CDS | 10269413 | 10269608 | 10269413 | ID=Msa0314500-mRNA-1:cds;Parent=Msa0314500-mRNA-1 |
| chr2_4 | CDS | 10268319 | 10268502 | 10268319 | ID=Msa0314500-mRNA-1:cds;Parent=Msa0314500-mRNA-1 |
| chr2_4 | CDS | 10267743 | 10267897 | 10267743 | ID=Msa0314500-mRNA-1:cds;Parent=Msa0314500-mRNA-1 |
| chr2_4 | CDS | 10266417 | 10267061 | 10266417 | ID=Msa0314500-mRNA-1:cds;Parent=Msa0314500-mRNA-1 |
| chr2_4 | three_prime_UTR | 10266188 | 10266416 | 10266188 | ID=Msa0314500-mRNA-1:three_prime_utr;Parent=Msa0314500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
