AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0614350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0614350 MtrunA17_Chr4g0050381 95.406 283 6 2 1 281 1 278 0.0 550
Msa0614350 MtrunA17_Chr2g0279151 74.825 286 61 3 1 280 1 281 2.78e-158 441
Msa0614350 MtrunA17_Chr3g0115851 72.125 287 68 4 1 280 1 282 9.84e-153 427
Msa0614350 MtrunA17_Chr5g0426141 72.474 287 67 4 1 280 1 282 5.67e-151 423
Msa0614350 MtrunA17_Chr8g0360351 60.517 271 99 3 12 279 16 281 2.61e-107 312
Msa0614350 MtrunA17_Chr2g0317021 58.824 272 104 3 12 280 67 333 5.16e-106 311
Msa0614350 MtrunA17_Chr4g0051661 51.154 260 119 3 22 279 144 397 1.68e-82 253
Msa0614350 MtrunA17_Chr1g0150451 45.283 265 135 5 18 279 66 323 1.38e-66 211
Msa0614350 MtrunA17_Chr3g0136711 45.149 268 131 6 18 279 23 280 1.32e-65 207
Msa0614350 MtrunA17_Chr1g0212961 42.238 277 143 7 10 279 71 337 5.57e-62 199
Msa0614350 MtrunA17_Chr3g0126511 41.328 271 149 5 12 279 77 340 1.15e-59 194
Msa0614350 MtrunA17_Chr5g0430481 35.985 264 144 11 30 280 124 375 2.57e-38 138
Msa0614350 MtrunA17_Chr3g0105371 34.586 266 145 11 31 280 87 339 4.32e-37 134
Msa0614350 MtrunA17_Chr4g0070871 35.985 264 115 8 61 281 253 505 2.14e-36 135
Msa0614350 MtrunA17_Chr1g0187481 32.090 268 153 6 19 279 32 277 1.19e-35 129
Msa0614350 MtrunA17_Chr3g0105351 34.211 266 146 11 31 280 63 315 5.43e-35 128
Msa0614350 MtrunA17_Chr2g0299981 32.945 343 149 13 11 281 204 537 5.78e-35 132
Msa0614350 MtrunA17_Chr5g0407161 34.483 232 131 7 60 279 123 345 2.64e-33 125
Msa0614350 MtrunA17_Chr3g0144111 34.615 260 114 10 43 279 1 227 1.49e-32 120
Msa0614350 MtrunA17_Chr1g0194191 33.597 253 136 10 47 277 105 347 2.47e-32 122
Msa0614350 MtrunA17_Chr1g0166481 31.802 283 160 5 4 279 17 273 3.11e-32 120
Msa0614350 MtrunA17_Chr2g0293811 32.365 241 128 8 61 277 100 329 8.00e-32 120
Msa0614350 MtrunA17_Chr4g0065141 31.559 263 146 11 43 280 98 351 1.68e-30 117
Msa0614350 MtrunA17_Chr1g0150781 33.456 272 126 9 54 280 283 544 2.03e-30 119
Msa0614350 MtrunA17_Chr1g0171571 30.420 286 171 7 13 280 370 645 6.02e-30 118
Msa0614350 MtrunA17_Chr3g0135961 31.970 269 136 7 54 281 279 541 1.88e-29 116
Msa0614350 MtrunA17_Chr3g0138281 33.077 260 144 8 43 280 95 346 4.85e-29 113
Msa0614350 MtrunA17_Chr1g0158781 32.867 286 157 10 22 281 105 381 4.26e-28 111
Msa0614350 MtrunA17_Chr6g0483411 33.468 248 128 9 62 280 80 319 5.87e-28 109
Msa0614350 MtrunA17_Chr3g0112291 31.164 292 154 10 29 280 92 376 8.73e-28 110
Msa0614350 MtrunA17_Chr1g0150071 27.414 321 153 11 28 280 22 330 7.76e-26 104
Msa0614350 MtrunA17_Chr5g0435721 31.780 236 137 5 29 247 192 420 3.14e-25 104
Msa0614350 MtrunA17_Chr8g0389921 30.328 244 140 6 61 280 198 435 3.80e-24 100
Msa0614350 MtrunA17_Chr5g0396731 30.638 235 138 7 30 247 73 299 2.64e-22 94.7
Msa0614350 MtrunA17_Chr3g0136811 26.168 321 157 11 28 280 22 330 5.51e-21 91.3
Msa0614350 MtrunA17_Chr1g0213351 29.758 289 140 12 32 269 47 323 1.38e-20 90.5
Msa0614350 MtrunA17_Chr7g0263281 29.658 263 134 11 30 246 35 292 4.02e-20 89.0
Msa0614350 MtrunA17_Chr4g0067711 32.243 214 114 9 90 279 146 352 4.65e-20 88.6
Msa0614350 MtrunA17_Chr3g0127091 27.815 302 153 11 27 276 58 346 5.92e-20 88.6
Msa0614350 MtrunA17_Chr7g0272061 34.123 211 111 10 90 277 154 359 6.13e-20 88.6
Msa0614350 MtrunA17_Chr4g0001761 27.554 323 149 14 28 280 22 329 6.17e-20 88.2
Msa0614350 MtrunA17_Chr3g0089721 28.866 291 149 11 19 264 29 306 1.62e-19 87.4
Msa0614350 MtrunA17_Chr3g0089711 28.866 291 149 11 19 264 29 306 2.38e-19 86.7
Msa0614350 MtrunA17_Chr2g0295401 33.945 218 113 9 86 279 143 353 2.67e-19 86.7
Msa0614350 MtrunA17_Chr1g0209451 27.059 255 160 9 44 277 46 295 3.59e-19 86.7
Msa0614350 MtrunA17_Chr1g0192421 32.701 211 117 8 90 279 144 350 4.95e-19 85.5
Msa0614350 MtrunA17_Chr1g0181901 28.846 260 140 9 30 246 40 297 2.88e-18 84.0
Msa0614350 MtrunA17_Chr7g0221691 35.556 180 99 7 98 263 208 384 5.24e-18 83.6
Msa0614350 MtrunA17_Chr7g0256771 27.907 258 140 9 30 247 41 292 5.27e-18 82.4
Msa0614350 MtrunA17_Chr8g0371321 27.273 253 132 7 64 272 82 326 6.28e-18 82.8
Msa0614350 MtrunA17_Chr1g0211251 28.016 257 143 7 32 247 48 303 8.88e-18 82.4
Msa0614350 MtrunA17_Chr7g0250061 27.143 280 159 10 32 269 43 319 1.07e-17 82.0
Msa0614350 MtrunA17_Chr4g0004971 34.000 200 102 7 78 264 139 321 1.89e-17 81.3
Msa0614350 MtrunA17_Chr1g0153671 27.778 234 146 9 61 277 65 292 4.98e-17 80.5
Msa0614350 MtrunA17_Chr2g0324061 32.022 178 103 7 82 245 149 322 5.47e-17 80.5
Msa0614350 MtrunA17_Chr7g0225501 29.078 282 164 13 22 277 46 317 6.98e-17 80.1
Msa0614350 MtrunA17_Chr7g0243571 34.161 161 83 6 121 264 188 342 1.95e-16 79.0
Msa0614350 MtrunA17_Chr7g0271971 29.185 233 144 9 61 277 68 295 2.59e-16 78.6
Msa0614350 MtrunA17_Chr2g0294291 26.804 291 148 13 29 269 44 319 2.70e-16 78.2
Msa0614350 MtrunA17_Chr4g0022171 30.108 186 112 7 92 263 166 347 3.94e-16 78.2
Msa0614350 MtrunA17_Chr7g0249421 35.758 165 85 7 98 245 183 343 5.22e-16 77.8
Msa0614350 MtrunA17_Chr1g0192471 26.619 278 174 10 21 277 27 295 5.47e-16 77.4
Msa0614350 MtrunA17_Chr4g0068971 33.600 125 61 4 165 277 115 229 6.97e-16 75.9
Msa0614350 MtrunA17_Chr8g0342431 34.302 172 91 6 128 279 203 372 1.09e-15 76.6
Msa0614350 MtrunA17_Chr1g0151781 30.435 230 118 12 56 246 62 288 5.03e-15 74.3
Msa0614350 MtrunA17_Chr3g0133801 26.496 234 149 9 61 277 66 293 8.78e-15 73.9
Msa0614350 MtrunA17_Chr4g0063051 27.451 255 154 11 32 269 35 275 2.23e-14 72.4
Msa0614350 MtrunA17_Chr4g0063111 27.338 278 160 11 30 273 47 316 2.83e-14 72.4
Msa0614350 MtrunA17_Chr7g0256751 27.336 289 156 15 30 274 40 318 7.44e-14 71.2
Msa0614350 MtrunA17_Chr1g0207571 27.622 286 144 10 32 269 36 306 8.03e-14 70.9
Msa0614350 MtrunA17_Chr5g0394181 25.874 286 153 10 32 279 333 597 1.04e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0614350 AT1G34750.2 69.338 287 76 4 1 280 1 282 2.06e-143 404
Msa0614350 AT1G34750.1 69.338 287 76 4 1 280 1 282 2.06e-143 404
Msa0614350 AT1G34750.3 69.338 287 76 4 1 280 1 282 2.06e-143 404
Msa0614350 AT1G22280.1 68.881 286 78 4 1 280 1 281 5.46e-138 390
Msa0614350 AT1G22280.3 67.466 292 78 5 1 280 1 287 1.52e-135 384
Msa0614350 AT1G78200.1 60.490 286 104 5 1 280 1 283 8.70e-119 342
Msa0614350 AT1G78200.3 60.490 286 104 5 1 280 1 283 8.70e-119 342
Msa0614350 AT1G78200.2 60.490 286 104 5 1 280 1 283 8.70e-119 342
Msa0614350 AT1G34750.4 66.270 252 71 5 1 245 1 245 1.50e-114 330
Msa0614350 AT4G28400.3 59.091 264 100 4 19 279 2 260 1.29e-105 308
Msa0614350 AT2G20630.1 56.985 272 109 4 12 280 13 279 3.26e-105 307
Msa0614350 AT4G28400.1 59.091 264 100 4 19 279 24 282 3.46e-105 307
Msa0614350 AT3G15260.2 60.741 270 98 4 14 280 25 289 4.37e-105 307
Msa0614350 AT3G15260.1 60.741 270 98 4 14 280 25 289 4.37e-105 307
Msa0614350 AT1G78200.5 63.485 241 82 4 43 280 1 238 1.30e-103 301
Msa0614350 AT1G78200.4 63.485 241 82 4 43 280 1 238 1.30e-103 301
Msa0614350 AT2G20630.2 56.877 269 112 3 12 279 13 278 2.99e-102 300
Msa0614350 AT1G22280.2 71.892 185 48 1 1 181 1 185 5.03e-90 266
Msa0614350 AT4G28400.2 57.919 221 85 4 19 236 24 239 6.98e-83 249
Msa0614350 AT2G34740.1 53.360 253 109 4 30 279 88 334 4.75e-81 248
Msa0614350 AT4G31750.2 45.283 265 135 5 18 279 22 279 1.91e-68 214
Msa0614350 AT4G31750.1 45.283 265 135 5 18 279 22 279 2.77e-68 214
Msa0614350 AT4G31750.3 45.283 265 135 5 18 279 22 279 2.77e-68 214
Msa0614350 AT5G10740.1 45.283 265 135 5 18 279 22 279 6.13e-68 215
Msa0614350 AT5G10740.2 45.283 265 135 5 18 279 22 279 6.13e-68 215
Msa0614350 AT5G24940.1 44.776 268 132 6 18 279 22 279 1.21e-66 214
Msa0614350 AT2G34740.2 52.857 210 90 4 30 236 102 305 1.13e-65 208
Msa0614350 AT2G34740.3 52.857 210 90 4 30 236 84 287 1.23e-65 207
Msa0614350 AT1G43900.1 42.143 280 146 7 9 280 98 369 6.63e-61 197
Msa0614350 AT5G53140.1 38.491 265 153 5 19 280 91 348 5.15e-58 191
Msa0614350 AT5G53140.2 38.491 265 153 5 19 280 91 348 5.15e-58 191
Msa0614350 AT1G07160.1 37.736 265 139 10 30 279 123 376 2.38e-38 139
Msa0614350 AT2G30020.1 38.095 252 132 11 43 280 152 393 1.09e-36 134
Msa0614350 AT2G33700.1 33.453 278 156 9 22 279 76 344 1.64e-36 134
Msa0614350 AT3G62260.3 34.701 268 135 10 43 279 1 259 2.08e-36 131
Msa0614350 AT3G62260.1 34.701 268 135 10 43 279 90 348 1.31e-35 131
Msa0614350 AT3G62260.2 34.701 268 135 10 43 279 91 349 1.36e-35 131
Msa0614350 AT3G51470.2 30.822 292 177 10 4 279 1 283 9.15e-35 128
Msa0614350 AT3G51470.1 32.540 252 146 9 43 279 85 327 4.04e-34 127
Msa0614350 AT2G40180.1 34.749 259 137 10 42 280 140 386 9.07e-34 127
Msa0614350 AT3G17250.1 34.413 247 127 7 59 279 156 393 1.01e-31 122
Msa0614350 AT2G25620.1 34.599 237 127 8 60 277 127 354 7.19e-31 119
Msa0614350 AT2G25620.2 34.599 237 127 8 60 277 127 354 7.19e-31 119
Msa0614350 AT5G57050.2 34.733 262 122 10 61 281 120 373 7.88e-31 119
Msa0614350 AT5G57050.1 34.733 262 122 10 61 281 160 413 9.52e-31 119
Msa0614350 AT1G48040.1 31.699 306 165 12 7 279 55 349 2.56e-30 117
Msa0614350 AT1G67820.2 33.624 229 135 6 43 264 97 315 7.00e-30 116
Msa0614350 AT1G67820.1 34.188 234 127 7 43 264 133 351 1.59e-29 116
Msa0614350 AT3G23360.1 30.942 223 119 5 58 279 71 259 3.56e-29 112
Msa0614350 AT2G40860.4 34.231 260 134 11 43 280 307 551 5.29e-29 115
Msa0614350 AT2G40860.1 34.231 260 134 11 43 280 405 649 6.24e-29 116
Msa0614350 AT1G07430.1 33.200 250 122 7 29 247 120 355 7.48e-29 114
Msa0614350 AT4G26080.1 32.131 305 143 12 30 280 129 423 8.82e-29 114
Msa0614350 AT1G72770.4 31.915 282 132 9 51 281 231 503 1.16e-27 111
Msa0614350 AT1G72770.1 31.915 282 132 9 51 281 231 503 1.16e-27 111
Msa0614350 AT1G72770.3 31.915 282 132 9 51 281 231 503 1.16e-27 111
Msa0614350 AT5G51760.2 30.218 321 157 11 20 280 69 382 1.81e-27 109
Msa0614350 AT5G51760.1 30.218 321 157 11 20 280 99 412 1.94e-27 110
Msa0614350 AT2G29380.1 32.432 296 145 14 29 280 77 361 5.01e-27 108
Msa0614350 AT2G40860.2 34.008 247 126 11 43 267 405 636 4.75e-26 107
Msa0614350 AT5G59220.1 32.231 242 132 7 29 247 111 343 8.92e-26 105
Msa0614350 AT1G17550.1 30.545 275 129 8 61 281 237 503 3.24e-25 104
Msa0614350 AT1G17550.2 30.545 275 129 8 61 281 237 503 3.24e-25 104
Msa0614350 AT1G18030.1 30.545 275 150 11 39 280 83 349 9.41e-24 99.4
Msa0614350 AT3G16800.4 38.043 184 86 7 121 280 75 254 1.03e-23 97.4
Msa0614350 AT3G16800.6 38.043 184 86 7 121 280 75 254 1.03e-23 97.4
Msa0614350 AT3G11410.1 31.481 216 110 6 61 247 137 343 1.21e-23 99.4
Msa0614350 AT3G16800.2 39.130 184 84 8 121 280 170 349 3.51e-23 97.4
Msa0614350 AT3G16800.1 39.130 184 84 8 121 280 170 349 3.51e-23 97.4
Msa0614350 AT3G16800.3 39.130 184 84 8 121 280 170 349 3.51e-23 97.4
Msa0614350 AT4G27800.1 29.653 317 167 13 10 276 35 345 7.27e-23 97.1
Msa0614350 AT5G27930.1 34.928 209 111 8 90 277 148 352 9.32e-22 94.0
Msa0614350 AT5G27930.2 34.928 209 111 8 90 277 148 352 9.32e-22 94.0
Msa0614350 AT3G05640.2 35.349 215 114 9 86 279 139 349 2.29e-21 92.8
Msa0614350 AT3G05640.1 35.349 215 114 9 86 279 139 349 2.29e-21 92.8
Msa0614350 AT3G05640.3 35.349 215 114 9 86 279 139 349 2.29e-21 92.8
Msa0614350 AT2G25070.1 27.103 321 154 13 28 280 22 330 6.95e-21 91.3
Msa0614350 AT2G25070.2 27.103 321 154 13 28 280 22 330 6.95e-21 91.3
Msa0614350 AT4G31860.1 25.857 321 158 12 28 280 22 330 3.81e-20 89.4
Msa0614350 AT3G12620.2 29.431 299 148 12 22 269 40 326 4.29e-20 89.4
Msa0614350 AT3G12620.1 29.431 299 148 12 22 269 40 326 4.29e-20 89.4
Msa0614350 AT1G09160.2 28.413 271 164 10 28 277 34 295 1.60e-19 88.2
Msa0614350 AT1G09160.1 28.413 271 164 10 28 277 34 295 1.60e-19 88.2
Msa0614350 AT1G68410.4 27.059 255 160 10 44 277 51 300 1.67e-19 88.2
Msa0614350 AT1G68410.3 27.059 255 160 10 44 277 51 300 1.67e-19 88.2
Msa0614350 AT1G68410.1 27.059 255 160 10 44 277 51 300 1.67e-19 88.2
Msa0614350 AT1G68410.2 27.059 255 160 10 44 277 51 300 1.67e-19 88.2
Msa0614350 AT3G55050.1 27.389 314 152 10 32 277 51 356 1.72e-19 87.8
Msa0614350 AT3G55050.2 27.389 314 152 10 32 277 51 356 1.72e-19 87.8
Msa0614350 AT1G18030.2 31.858 226 118 9 39 236 83 300 3.40e-19 85.9
Msa0614350 AT4G27800.2 29.180 305 160 13 10 264 35 333 5.14e-19 85.9
Msa0614350 AT1G47380.1 26.642 274 169 12 21 277 33 291 6.34e-19 86.3
Msa0614350 AT4G08260.1 31.429 245 125 10 43 280 1 209 7.88e-19 83.2
Msa0614350 AT3G27140.1 31.707 246 103 10 43 280 1 189 9.43e-19 83.6
Msa0614350 AT4G31860.3 27.437 277 130 11 28 245 22 286 2.17e-18 83.6
Msa0614350 AT1G79630.2 34.171 199 110 7 101 279 131 328 2.24e-18 84.7
Msa0614350 AT1G79630.7 34.171 199 110 7 101 279 131 328 2.24e-18 84.7
Msa0614350 AT3G51370.1 28.723 282 152 11 32 269 46 322 2.84e-18 84.3
Msa0614350 AT3G51370.3 28.723 282 152 11 32 269 46 322 2.84e-18 84.3
Msa0614350 AT5G66080.1 30.364 247 125 10 64 269 85 325 3.23e-18 84.0
Msa0614350 AT1G79630.6 34.171 199 110 7 101 279 91 288 3.80e-18 84.0
Msa0614350 AT1G79630.3 34.171 199 110 7 101 279 91 288 3.80e-18 84.0
Msa0614350 AT1G79630.4 34.171 199 110 7 101 279 91 288 3.80e-18 84.0
Msa0614350 AT1G79630.5 34.171 199 110 7 101 279 91 288 3.80e-18 84.0
Msa0614350 AT1G79630.1 34.171 199 110 7 101 279 201 398 4.33e-18 84.3
Msa0614350 AT1G79630.8 34.171 199 110 7 101 279 197 394 4.59e-18 84.3
Msa0614350 AT4G27800.3 28.521 284 151 12 10 247 35 312 5.96e-18 82.8
Msa0614350 AT5G02760.1 30.268 261 128 11 32 246 39 291 8.61e-18 82.8
Msa0614350 AT4G38520.2 27.358 318 151 13 32 279 48 355 2.07e-17 82.0
Msa0614350 AT4G38520.1 27.358 318 151 13 32 279 48 355 2.07e-17 82.0
Msa0614350 AT4G03415.1 33.529 170 95 7 91 246 167 332 3.67e-17 81.3
Msa0614350 AT4G03415.3 33.529 170 95 7 91 246 167 332 3.67e-17 81.3
Msa0614350 AT4G03415.2 33.529 170 95 7 91 246 167 332 3.67e-17 81.3
Msa0614350 AT4G32950.1 29.434 265 147 12 49 279 58 316 6.21e-17 79.7
Msa0614350 AT1G16220.1 34.831 178 96 6 121 279 199 375 9.89e-17 80.1
Msa0614350 AT5G01700.1 29.600 250 133 11 53 263 20 265 1.44e-16 79.0
Msa0614350 AT5G06750.3 26.786 280 155 9 32 269 57 328 2.16e-16 79.0
Msa0614350 AT5G06750.1 26.786 280 155 9 32 269 57 328 2.16e-16 79.0
Msa0614350 AT5G01700.2 29.600 250 133 11 53 263 69 314 2.23e-16 78.6
Msa0614350 AT4G31860.2 27.068 266 123 11 28 234 22 275 1.86e-15 75.1
Msa0614350 AT3G02750.2 37.576 165 82 8 98 245 192 352 1.95e-15 76.3
Msa0614350 AT3G02750.1 37.576 165 82 8 98 245 192 352 1.95e-15 76.3
Msa0614350 AT3G51370.2 29.808 208 106 7 99 269 33 237 4.92e-15 73.9
Msa0614350 AT1G03590.1 30.994 171 98 8 91 246 157 322 7.30e-15 74.7
Msa0614350 AT5G66080.2 31.731 208 102 9 99 269 17 221 8.50e-15 73.2
Msa0614350 AT3G17090.1 26.667 285 146 12 32 269 59 327 8.69e-15 73.9
Msa0614350 AT4G33920.1 26.298 289 145 10 32 269 36 307 1.84e-14 73.2
Msa0614350 AT3G17090.2 26.616 263 129 11 32 246 59 305 1.85e-14 72.8
Msa0614350 AT5G36250.1 31.606 193 117 6 86 264 171 362 2.28e-14 73.2
Msa0614350 AT5G26010.1 29.907 214 117 10 61 245 73 282 2.77e-13 69.3
Msa0614350 AT2G40860.3 31.553 206 105 10 43 227 405 595 2.79e-13 70.1
Msa0614350 AT2G05050.1 40.426 94 50 2 193 280 97 190 1.82e-12 65.1
Msa0614350 AT5G59220.2 30.256 195 104 7 29 200 111 296 2.02e-12 66.6
Msa0614350 AT5G27930.3 34.810 158 85 7 90 233 148 301 4.24e-12 65.9
Msa0614350 AT5G57050.3 33.333 156 81 8 61 201 160 307 6.61e-12 65.1
Msa0614350 AT5G36250.2 29.469 207 117 7 86 264 171 376 2.79e-11 63.9
Msa0614350 AT4G32950.2 29.907 214 117 11 49 235 58 265 7.17e-11 62.0

Find 119 sgRNAs with CRISPR-Local

Find 408 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCATACTCTACTCGTTATT+TGG 0.122971 4_2:-63347711 Msa0614350:three_prime_UTR
AATATTCAACATTCATTCTT+TGG 0.208896 4_2:+63347210 None:intergenic
TATGGCTTCAGCCTTGTTAA+AGG 0.234451 4_2:-63349872 Msa0614350:CDS
TCATAAATAATCAGAAACTA+TGG 0.245102 4_2:-63349285 Msa0614350:CDS
TTAATCTCCGGTTGCAATTC+AGG 0.247509 4_2:-63347428 Msa0614350:three_prime_UTR
TCCAAATAACGAGTAGAGTA+TGG 0.248072 4_2:+63347710 None:intergenic
TCTTACTCACAGTCCTGATT+TGG 0.258294 4_2:-63349341 Msa0614350:CDS
ATGCTGCCACGTTCCGTATT+AGG 0.263923 4_2:+63349187 None:intergenic
ACATAGATCTCAGGGTTAAT+TGG 0.268434 4_2:+63349124 None:intergenic
GCTAAGGCGTTCGCCACCTT+TGG 0.286009 4_2:-63347300 Msa0614350:three_prime_UTR
CTGAAACCGAAAAGTCAATA+AGG 0.288239 4_2:-63352614 Msa0614350:five_prime_UTR
CTTGCGGTTTCTCGAGCATT+TGG 0.293242 4_2:-63348463 Msa0614350:CDS
CTTACTCACAGTCCTGATTT+GGG 0.296069 4_2:-63349340 Msa0614350:CDS
TATGGGATTGCATCCTTCTA+TGG 0.297331 4_2:+63347728 None:intergenic
AGTCAGTCGCCGGTCAAATA+TGG 0.346833 4_2:-63349890 Msa0614350:CDS
TTTAGAATTTATTGATTCCT+TGG 0.366434 4_2:-63347600 Msa0614350:three_prime_UTR
AAATTGAGATTCTTGAGTTT+AGG 0.369143 4_2:-63347633 Msa0614350:three_prime_UTR
TACTTGCTAGCGATGGTCTA+TGG 0.371643 4_2:-63348360 Msa0614350:CDS
CTAGCTCTTGTCCTTTGAAA+TGG 0.374864 4_2:+63349804 None:intergenic
CTAAGGCGTTCGCCACCTTT+GGG 0.374922 4_2:-63347299 Msa0614350:three_prime_UTR
CTGCGTTGTAGTTCGTTTCA+AGG 0.376878 4_2:-63347816 Msa0614350:CDS
GATCCTCCTCGCCCCAAATC+AGG 0.383630 4_2:+63349328 None:intergenic
GAGGTGGGAGTTGGAATATA+TGG 0.386933 4_2:-63352178 Msa0614350:exon
TATATAGGATTTCCCATAGA+AGG 0.393933 4_2:-63347741 Msa0614350:three_prime_UTR
TTGAAGGTTAGCTGAAGAAT+TGG 0.396384 4_2:-63352226 Msa0614350:intron
ATGGCTTCAGCCTTGTTAAA+GGG 0.403753 4_2:-63349871 Msa0614350:CDS
AGAAAATTTGAGGTGGGAGT+TGG 0.412410 4_2:-63352187 Msa0614350:five_prime_UTR
TTGAATATTCTTTACTCCCT+CGG 0.420449 4_2:-63347196 Msa0614350:three_prime_UTR
TTGTTGCTTCAGCTCCAGTC+AGG 0.432313 4_2:-63352148 Msa0614350:intron
TGCTCGGGAGTCTCCAACAT+TGG 0.439303 4_2:+63349258 None:intergenic
GAATTTGTTCCTCACCTGAC+TGG 0.441413 4_2:+63352134 None:intergenic
GAATGTCAGGATCGGATCTC+AGG 0.441582 4_2:+63348419 None:intergenic
ACCAACACAACATAGATCTC+AGG 0.444961 4_2:+63349115 None:intergenic
TGCTATATACGATGGACACC+TGG 0.446385 4_2:-63349774 Msa0614350:CDS
TACTGATCATGAACCTAATA+CGG 0.455930 4_2:-63349200 Msa0614350:CDS
CCCTGAGATCTATGTTGTGT+TGG 0.464216 4_2:-63349116 Msa0614350:intron
AAACTATGGGTCGCCAATGT+TGG 0.465870 4_2:-63349271 Msa0614350:CDS
GGCTTTGTCTCAAACATGCC+AGG 0.470402 4_2:-63349151 Msa0614350:CDS
TACTATACTTGATTAATCTC+CGG 0.470614 4_2:-63347440 Msa0614350:three_prime_UTR
AGCTTATGAGTCGACAGATC+AGG 0.471067 4_2:-63349368 Msa0614350:CDS
ACATCAGCATACTGAATGTC+AGG 0.474342 4_2:+63348406 None:intergenic
TCTATCAAGGGGAGGGGTAG+CGG 0.480200 4_2:-63349233 Msa0614350:CDS
CGACTCATAAGCTTTAGAAA+TGG 0.482291 4_2:+63349378 None:intergenic
TTGTAATATGGTTGATGTCA+TGG 0.484200 4_2:-63347545 Msa0614350:three_prime_UTR
GCTACGTGATAGTCCTCCAT+TGG 0.489286 4_2:+63349836 None:intergenic
TTCATAAGCATGCCCGGCGA+AGG 0.489671 4_2:+63347345 None:intergenic
TGAAACCGAAAAGTCAATAA+GGG 0.490291 4_2:-63352613 Msa0614350:five_prime_UTR
TGCGTTGTAGTTCGTTTCAA+GGG 0.490929 4_2:-63347815 Msa0614350:CDS
AAAGATAAAGGATCCACAAA+AGG 0.500549 4_2:-63347894 Msa0614350:CDS
CATAAGCATGCCCGGCGAAG+GGG 0.503801 4_2:+63347347 None:intergenic
ACTCCCGAGCAGTTCTATCA+AGG 0.504680 4_2:-63349246 Msa0614350:CDS
ATAGTCCTCCATTGGATGGT+TGG 0.505263 4_2:+63349844 None:intergenic
ATGCTCACCTGAATTGCAAC+CGG 0.507155 4_2:+63347421 None:intergenic
TCCCCTTGATAGAACTGCTC+GGG 0.507829 4_2:+63349243 None:intergenic
GAAACAAAAGAAACAGTGTC+AGG 0.510783 4_2:-63352680 Msa0614350:five_prime_UTR
CACAGTCCTGATTTGGGGCG+AGG 0.514382 4_2:-63349334 Msa0614350:CDS
CTTGATTTCATAAGCATGCC+CGG 0.514752 4_2:+63347339 None:intergenic
GGCATTGAACAGAGACAGTA+AGG 0.515439 4_2:-63347849 Msa0614350:CDS
AATTATATACAGAAAATTTG+AGG 0.517785 4_2:-63352197 Msa0614350:five_prime_UTR
GTCATGGAGCAGTGTGATGA+TGG 0.519844 4_2:-63347529 Msa0614350:three_prime_UTR
GCTTTAGAAATGGACATGAA+TGG 0.532144 4_2:+63349388 None:intergenic
CATAAATAATCAGAAACTAT+GGG 0.538367 4_2:-63349284 Msa0614350:CDS
GGTTGGCTTTCCCTTTAACA+AGG 0.539372 4_2:+63349861 None:intergenic
TTGAGATTCTTGAGTTTAGG+TGG 0.542678 4_2:-63347630 Msa0614350:three_prime_UTR
ATGGGATTGCATCCTTCTAT+GGG 0.543611 4_2:+63347729 None:intergenic
CCAAATAACGAGTAGAGTAT+GGG 0.550599 4_2:+63347711 None:intergenic
TCATAAGCATGCCCGGCGAA+GGG 0.551465 4_2:+63347346 None:intergenic
CTCCCGAGCAGTTCTATCAA+GGG 0.553850 4_2:-63349245 Msa0614350:CDS
AGGCAAGAGCAGTCAGTCGC+CGG 0.556118 4_2:-63349900 Msa0614350:CDS
GGGCGTAATTCATGCAACTC+TGG 0.556408 4_2:-63349926 Msa0614350:CDS
ATATACAGAAAATTTGAGGT+GGG 0.557119 4_2:-63352193 Msa0614350:five_prime_UTR
CTCCCCTTGATAGAACTGCT+CGG 0.562021 4_2:+63349242 None:intergenic
CATTTCAAAGGACAAGAGCT+AGG 0.564093 4_2:-63349803 Msa0614350:CDS
TTCGTTTCAAGGGATGAAAG+AGG 0.568557 4_2:-63347805 Msa0614350:exon
CGTGATAGTCCTCCATTGGA+TGG 0.568679 4_2:+63349840 None:intergenic
ATAAACAACAACACACGACA+CGG 0.570080 4_2:-63352641 Msa0614350:five_prime_UTR
ATGACGGTACACTGTCTCCC+AGG 0.570908 4_2:+63349756 None:intergenic
TCGTTTCAAGGGATGAAAGA+GGG 0.571998 4_2:-63347804 Msa0614350:exon
TGCTAGCGATGGTCTATGGA+AGG 0.572471 4_2:-63348356 Msa0614350:intron
AGCAGTTCTATCAAGGGGAG+GGG 0.574810 4_2:-63349239 Msa0614350:CDS
AATGCAATGGAAAAGAAATG+AGG 0.576071 4_2:-63352752 None:intergenic
TCAGGGTTAATTGGAAAACC+TGG 0.578080 4_2:+63349133 None:intergenic
TAAACAACAACACACGACAC+GGG 0.578326 4_2:-63352640 Msa0614350:five_prime_UTR
AGTTCATACACTATTGAACA+TGG 0.580015 4_2:-63347498 Msa0614350:three_prime_UTR
TATATACAGAAAATTTGAGG+TGG 0.582241 4_2:-63352194 Msa0614350:five_prime_UTR
GAGCAGTTCTATCAAGGGGA+GGG 0.582426 4_2:-63349240 Msa0614350:CDS
AGGGAAAGCCAACCATCCAA+TGG 0.583994 4_2:-63349852 Msa0614350:CDS
AGGCTGAAGCCATATTTGAC+CGG 0.585857 4_2:+63349881 None:intergenic
AGCATACTGAATGTCAGGAT+CGG 0.592216 4_2:+63348411 None:intergenic
TTACTCACAGTCCTGATTTG+GGG 0.592875 4_2:-63349339 Msa0614350:CDS
GTGTGATTGTTACAACTACA+AGG 0.595215 4_2:+63352478 None:intergenic
ATAAGCATGCCCGGCGAAGG+GGG 0.597707 4_2:+63347348 None:intergenic
AATTCATGCAACTCTGGCAA+AGG 0.599041 4_2:-63349920 Msa0614350:CDS
ATTTATGAGAATTGCAGTCA+CGG 0.599326 4_2:+63349300 None:intergenic
CCAACACAACATAGATCTCA+GGG 0.599661 4_2:+63349116 None:intergenic
GCTATATACGATGGACACCT+GGG 0.604010 4_2:-63349773 Msa0614350:CDS
TATATAATCACACACTCGAT+CGG 0.611906 4_2:+63347461 None:intergenic
GGTTGCAATTCAGGTGAGCA+TGG 0.613218 4_2:-63347419 Msa0614350:three_prime_UTR
ACATAATAACATAACAAGAA+CGG 0.616271 4_2:-63352534 Msa0614350:five_prime_UTR
TCCCGAGCAGTTCTATCAAG+GGG 0.619633 4_2:-63349244 Msa0614350:CDS
CGAGCAGTTCTATCAAGGGG+AGG 0.622392 4_2:-63349241 Msa0614350:CDS
CTTGAAACGAACTACAACGC+AGG 0.624344 4_2:+63347817 None:intergenic
TGGAGCAGTGTGATGATGGA+TGG 0.624961 4_2:-63347525 Msa0614350:three_prime_UTR
AGTCCTGATTTGGGGCGAGG+AGG 0.633405 4_2:-63349331 Msa0614350:CDS
TTATACATATGAAAGGAAGG+AGG 0.634447 4_2:+63347664 None:intergenic
GTTCATACACTATTGAACAT+GGG 0.635050 4_2:-63347497 Msa0614350:three_prime_UTR
GGCATGCTTATGAAATCAAG+AGG 0.639031 4_2:-63347336 Msa0614350:three_prime_UTR
GGCAGCATTGAGAACAGAGG+CGG 0.640716 4_2:-63349172 Msa0614350:CDS
ACAAGTTCACATCCCAAAGG+TGG 0.646742 4_2:+63347287 None:intergenic
CATGAACCTAATACGGAACG+TGG 0.648300 4_2:-63349193 Msa0614350:CDS
GAAAGCCAACCATCCAATGG+AGG 0.651663 4_2:-63349849 Msa0614350:CDS
AGCTAAACAACTAGCTACTG+AGG 0.653567 4_2:-63347870 Msa0614350:CDS
TTTGGTGTGAGGAAGACCGA+GGG 0.661766 4_2:+63347180 None:intergenic
ATAACAAGTTCACATCCCAA+AGG 0.684300 4_2:+63347284 None:intergenic
ATGAATCTATATCACAACCA+AGG 0.688438 4_2:+63347583 None:intergenic
CGTGGCAGCATTGAGAACAG+AGG 0.710736 4_2:-63349175 Msa0614350:CDS
GTTTGGTGTGAGGAAGACCG+AGG 0.716392 4_2:+63347179 None:intergenic
GTTCAATAGTGTATGAACTG+TGG 0.729880 4_2:+63347502 None:intergenic
TGTGATTGTTACAACTACAA+GGG 0.764497 4_2:+63352479 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTTTTTGTAAAGTTA+TGG - chr4_2:63347653-63347672 Msa0614350:three_prime_UTR 10.0%
!! ATTTCACAAATATATAATAA+AGG + chr4_2:63349923-63349942 None:intergenic 10.0%
!!! ATTTACTTGTTTTTTATTTT+TGG - chr4_2:63350431-63350450 Msa0614350:intron 10.0%
!!! TAAATTTTTATACATATGAA+AGG + chr4_2:63352276-63352295 None:intergenic 10.0%
!!! TCAAAGTTTTCATTTTTAAT+AGG - chr4_2:63347509-63347528 Msa0614350:three_prime_UTR 15.0%
!!! AAATTTATGCCTTTTTTTTA+TGG - chr4_2:63347553-63347572 Msa0614350:three_prime_UTR 15.0%
!!! AATTTATGCCTTTTTTTTAT+GGG - chr4_2:63347554-63347573 Msa0614350:three_prime_UTR 15.0%
!! AATTATATACAGAAAATTTG+AGG - chr4_2:63347733-63347752 Msa0614350:three_prime_UTR 15.0%
!! AGAAGAAATATTACAAAATT+GGG + chr4_2:63347827-63347846 None:intergenic 15.0%
!! AAGAAGAAATATTACAAAAT+TGG + chr4_2:63347828-63347847 None:intergenic 15.0%
!! ACTTTGATAAAAATTGAAAT+TGG - chr4_2:63348619-63348638 Msa0614350:intron 15.0%
!!! TAAATTGGTTTCTATATTTT+TGG + chr4_2:63348970-63348989 None:intergenic 15.0%
!! AAAAATATAGAAACCAATTT+AGG - chr4_2:63348969-63348988 Msa0614350:intron 15.0%
!! TATTATATATTTGTGAAATG+TGG - chr4_2:63349924-63349943 Msa0614350:CDS 15.0%
!! AAACTAAAGATATTATGTAT+TGG - chr4_2:63350250-63350269 Msa0614350:intron 15.0%
!!! TAAATTAAGTCAATTTTACA+AGG + chr4_2:63350416-63350435 None:intergenic 15.0%
!!! TTGTTTTTTATTTTTGGAAA+GGG - chr4_2:63350437-63350456 Msa0614350:intron 15.0%
!!! TTTATGTTGTGATTTTATAT+AGG - chr4_2:63350502-63350521 Msa0614350:intron 15.0%
!!! TTAGCTTTAGATATAATAAT+AGG + chr4_2:63351626-63351645 None:intergenic 15.0%
!!! TCATATTTTTCTTTGTAATA+TGG - chr4_2:63352373-63352392 Msa0614350:intron 15.0%
!! ACATAATAACATAACAAGAA+CGG - chr4_2:63347396-63347415 Msa0614350:three_prime_UTR 20.0%
!!! GTTTTCATTTTTAATAGGTA+AGG - chr4_2:63347514-63347533 Msa0614350:three_prime_UTR 20.0%
!!! TTTAATAGGTAAGGAATTTT+CGG - chr4_2:63347523-63347542 Msa0614350:three_prime_UTR 20.0%
!!! ATTTATGCCTTTTTTTTATG+GGG - chr4_2:63347555-63347574 Msa0614350:three_prime_UTR 20.0%
!! AAACTCAAAAATTATATGCA+TGG + chr4_2:63347873-63347892 None:intergenic 20.0%
!!! ATAATTTTTGAGTTTTCCTT+TGG - chr4_2:63347878-63347897 Msa0614350:CDS 20.0%
!! AAAATTGTGAAGTAACAAAT+TGG + chr4_2:63348039-63348058 None:intergenic 20.0%
!!! TTTTGGGTTTTATTTTTTGT+CGG - chr4_2:63348273-63348292 Msa0614350:intron 20.0%
!! TAATGTTTAGTTATAGAGAA+TGG - chr4_2:63348775-63348794 Msa0614350:intron 20.0%
!!! TCTATATTTTTGGCTTTATT+AGG + chr4_2:63348960-63348979 None:intergenic 20.0%
!! TATGAACATTATCAAACAAT+AGG - chr4_2:63349185-63349204 Msa0614350:CDS 20.0%
!! ATAATTTAACCTCACAAAAT+TGG + chr4_2:63349391-63349410 None:intergenic 20.0%
!!! CTTGTTTTTTATTTTTGGAA+AGG - chr4_2:63350436-63350455 Msa0614350:intron 20.0%
!! GTTAACAAAAATAGTTACAA+AGG + chr4_2:63350480-63350499 None:intergenic 20.0%
!! TCATAAATAATCAGAAACTA+TGG - chr4_2:63350645-63350664 Msa0614350:intron 20.0%
!! CATAAATAATCAGAAACTAT+GGG - chr4_2:63350646-63350665 Msa0614350:intron 20.0%
!!! TGAATATATCCAACATATTT+TGG + chr4_2:63351121-63351140 None:intergenic 20.0%
!!! ATAAAAAAAGGTGTATTACA+TGG - chr4_2:63351244-63351263 Msa0614350:intron 20.0%
!! TTTGTAATAATTTCTTCATG+TGG - chr4_2:63351408-63351427 Msa0614350:intron 20.0%
!! TTGTAATAATTTCTTCATGT+GGG - chr4_2:63351409-63351428 Msa0614350:intron 20.0%
!! ACAAAATAAAACCTACTTAA+AGG + chr4_2:63351665-63351684 None:intergenic 20.0%
!! TATATTTCGTGGAAATATTA+GGG + chr4_2:63351828-63351847 None:intergenic 20.0%
!! GATTGAAAATTCTTAAAAGA+TGG + chr4_2:63351926-63351945 None:intergenic 20.0%
!!! TATCTTTTTTGCAATATCAA+CGG + chr4_2:63352023-63352042 None:intergenic 20.0%
!! TGATATTGCAAAAAAGATAA+AGG - chr4_2:63352024-63352043 Msa0614350:intron 20.0%
!!! TATACATACTCTAAATTTTC+AGG - chr4_2:63352161-63352180 Msa0614350:CDS 20.0%
!!! ATACATACTCTAAATTTTCA+GGG - chr4_2:63352162-63352181 Msa0614350:CDS 20.0%
!!! TTTTTATACATATGAAAGGA+AGG + chr4_2:63352272-63352291 None:intergenic 20.0%
!!! TTTAGAATTTATTGATTCCT+TGG - chr4_2:63352330-63352349 Msa0614350:intron 20.0%
!! AATATTCAACATTCATTCTT+TGG + chr4_2:63352723-63352742 None:intergenic 20.0%
! TATATACAGAAAATTTGAGG+TGG - chr4_2:63347736-63347755 Msa0614350:three_prime_UTR 25.0%
!! ATATACAGAAAATTTGAGGT+GGG - chr4_2:63347737-63347756 Msa0614350:three_prime_UTR 25.0%
!!! TCTCTGACATATTTTTACTA+GGG - chr4_2:63348085-63348104 Msa0614350:intron 25.0%
!!! TCTCTGACATATTTTTACTA+GGG - chr4_2:63348085-63348104 Msa0614350:intron 25.0%
!! TCAAAGACTAGAACTATTTT+GGG - chr4_2:63348257-63348276 Msa0614350:intron 25.0%
!!! TTTGGGTTTTATTTTTTGTC+GGG - chr4_2:63348274-63348293 Msa0614350:intron 25.0%
! TTGTCAATTGCAAAAAATAG+TGG - chr4_2:63348358-63348377 Msa0614350:CDS 25.0%
! ACACTTTCTACTAAATAGTA+GGG - chr4_2:63348439-63348458 Msa0614350:CDS 25.0%
!!! GAAGTATAGATTTGTTTTTG+TGG - chr4_2:63348641-63348660 Msa0614350:intron 25.0%
!!! AATTCATGCTTTTTTGTAAC+AGG - chr4_2:63348909-63348928 Msa0614350:intron 25.0%
! TTTGATTGATGTTCCTAAAT+TGG + chr4_2:63348985-63349004 None:intergenic 25.0%
! TTTAGGAACATCAATCAAAT+AGG - chr4_2:63348986-63349005 Msa0614350:intron 25.0%
!!! TCTATCCTAAATCTGTTTTT+GGG - chr4_2:63349443-63349462 Msa0614350:intron 25.0%
!!! GATCATTTTTATTCCAATAG+AGG - chr4_2:63349539-63349558 Msa0614350:intron 25.0%
!! ATGGAAGTTTCGTAAAATTT+TGG + chr4_2:63349691-63349710 None:intergenic 25.0%
!! AATTTTACGAAACTTCCATT+CGG - chr4_2:63349692-63349711 Msa0614350:intron 25.0%
!! ATAGGCAATATACTGATTAT+GGG - chr4_2:63349742-63349761 Msa0614350:CDS 25.0%
!!! AAAACATGAGTTTTTTGAGT+AGG - chr4_2:63349827-63349846 Msa0614350:CDS 25.0%
!! TGAACTTGATTTTTGTGTTT+AGG - chr4_2:63349982-63350001 Msa0614350:intron 25.0%
!! GAACTTGATTTTTGTGTTTA+GGG - chr4_2:63349983-63350002 Msa0614350:intron 25.0%
!! AACTTGATTTTTGTGTTTAG+GGG - chr4_2:63349984-63350003 Msa0614350:intron 25.0%
!! TCTCTTTTCTAATATCTTGA+AGG - chr4_2:63350210-63350229 Msa0614350:intron 25.0%
!! TTTCTATTTTATGTTGTCTG+TGG - chr4_2:63350317-63350336 Msa0614350:intron 25.0%
!!! ATACTTTTTGCCAAAAGTAT+GGG + chr4_2:63350372-63350391 None:intergenic 25.0%
!! TCATTGCAAAAGTATAGAAT+GGG - chr4_2:63350956-63350975 Msa0614350:intron 25.0%
!!! AAACCTTCTTTTATTTCACA+AGG + chr4_2:63351080-63351099 None:intergenic 25.0%
!!! GCTTTTTTTCCAAAATATGT+TGG - chr4_2:63351109-63351128 Msa0614350:intron 25.0%
! ATATTCATACCCTAATGATT+CGG - chr4_2:63351134-63351153 Msa0614350:intron 25.0%
!! AAGTGTTTCTAAGTATTACA+AGG - chr4_2:63351215-63351234 Msa0614350:intron 25.0%
! ACTAAAACGAAAAAGAATCA+CGG + chr4_2:63351295-63351314 None:intergenic 25.0%
!! CGATTTTGTCATGAATTTTA+TGG - chr4_2:63351320-63351339 Msa0614350:intron 25.0%
! CTATATTTCGTGGAAATATT+AGG + chr4_2:63351829-63351848 None:intergenic 25.0%
! TAAAGTGATTCTATATTTCG+TGG + chr4_2:63351839-63351858 None:intergenic 25.0%
!!! AAGATGGATTAAACCAATTA+TGG + chr4_2:63351910-63351929 None:intergenic 25.0%
! AAATTGAGATTCTTGAGTTT+AGG - chr4_2:63352297-63352316 Msa0614350:intron 25.0%
! TACTATACTTGATTAATCTC+CGG - chr4_2:63352490-63352509 Msa0614350:five_prime_UTR 25.0%
! ACCAAAAAGAGAAAAGAAAA+GGG + chr4_2:63352678-63352697 None:intergenic 25.0%
! AACCAAAAAGAGAAAAGAAA+AGG + chr4_2:63352679-63352698 None:intergenic 25.0%
TGAAACCGAAAAGTCAATAA+GGG - chr4_2:63347317-63347336 Msa0614350:three_prime_UTR 30.0%
! TTTTGCTAAGAAATGGAACT+AGG + chr4_2:63347346-63347365 None:intergenic 30.0%
TGTGATTGTTACAACTACAA+GGG + chr4_2:63347454-63347473 None:intergenic 30.0%
TTTGATCAGAAAAAAGCAGA+AGG + chr4_2:63347494-63347513 None:intergenic 30.0%
AACAACACCCCATAAAAAAA+AGG + chr4_2:63347565-63347584 None:intergenic 30.0%
TGCTGATAATTCACTGTTAT+TGG - chr4_2:63347628-63347647 Msa0614350:three_prime_UTR 30.0%
!!! GTGATGTTTTTTGTTGTTGA+AGG - chr4_2:63347688-63347707 Msa0614350:three_prime_UTR 30.0%
ATACGATATAGTAACAAACC+AGG + chr4_2:63347933-63347952 None:intergenic 30.0%
TGAGACTAATAGTTTCTTGT+TGG - chr4_2:63347974-63347993 Msa0614350:intron 30.0%
!! AATATGTCAGAGACTAGTTT+GGG + chr4_2:63348078-63348097 None:intergenic 30.0%
! AAATATGTCAGAGACTAGTT+TGG + chr4_2:63348079-63348098 None:intergenic 30.0%
!! GTCTCTGACATATTTTTACT+AGG - chr4_2:63348084-63348103 Msa0614350:intron 30.0%
TCCCTAACTCAATAAAACAT+GGG + chr4_2:63348122-63348141 None:intergenic 30.0%
!! AATATGTCAGAGACTAGTTT+GGG + chr4_2:63348078-63348097 None:intergenic 30.0%
! AAATATGTCAGAGACTAGTT+TGG + chr4_2:63348079-63348098 None:intergenic 30.0%
!! GTCTCTGACATATTTTTACT+AGG - chr4_2:63348084-63348103 Msa0614350:intron 30.0%
TCCCTAACTCAATAAAACAT+GGG + chr4_2:63348122-63348141 None:intergenic 30.0%
! GTCAAAGACTAGAACTATTT+TGG - chr4_2:63348256-63348275 Msa0614350:intron 30.0%
!!! TTGGGTTTTATTTTTTGTCG+GGG - chr4_2:63348275-63348294 Msa0614350:intron 30.0%
TTTGTAGAGAAAACCCAATT+TGG + chr4_2:63348333-63348352 None:intergenic 30.0%
TCAAATTATGATACGCTACA+AGG - chr4_2:63348386-63348405 Msa0614350:CDS 30.0%
!! TAGAAAGTGTCATCAAATAG+CGG + chr4_2:63348429-63348448 None:intergenic 30.0%
GACACTTTCTACTAAATAGT+AGG - chr4_2:63348438-63348457 Msa0614350:CDS 30.0%
TGCTATACTCTTATGCTATA+GGG - chr4_2:63348487-63348506 Msa0614350:intron 30.0%
! AAGGACTTTTCTGTTACTAT+AGG - chr4_2:63348808-63348827 Msa0614350:intron 30.0%
GATGGTAAGATGGTAATATT+TGG + chr4_2:63348840-63348859 None:intergenic 30.0%
CATCAAAAACCAATGTAAGA+TGG + chr4_2:63348858-63348877 None:intergenic 30.0%
! AAAAAAGCATGAATTGAGAC+GGG + chr4_2:63348904-63348923 None:intergenic 30.0%
! CAAAAAAGCATGAATTGAGA+CGG + chr4_2:63348905-63348924 None:intergenic 30.0%
AGGAACAGATAAAGGAAAAT+AGG - chr4_2:63349050-63349069 Msa0614350:intron 30.0%
AAATAGGAATGAGCTAATTC+AGG - chr4_2:63349066-63349085 Msa0614350:intron 30.0%
AATAGGAATGAGCTAATTCA+GGG - chr4_2:63349067-63349086 Msa0614350:intron 30.0%
CCATCTCAAAATTAGGTTTA+GGG + chr4_2:63349415-63349434 None:intergenic 30.0%
ACCATCTCAAAATTAGGTTT+AGG + chr4_2:63349416-63349435 None:intergenic 30.0%
! GTCTATCCTAAATCTGTTTT+TGG - chr4_2:63349442-63349461 Msa0614350:intron 30.0%
! TTTATTCCAATAGAGGTATG+AGG - chr4_2:63349546-63349565 Msa0614350:intron 30.0%
!! AACTTACTATGCAGTTTTGT+GGG - chr4_2:63349641-63349660 Msa0614350:intron 30.0%
!! TTTCGTAAAATTTTGGCGTA+GGG + chr4_2:63349684-63349703 None:intergenic 30.0%
! GATAGGCAATATACTGATTA+TGG - chr4_2:63349741-63349760 Msa0614350:CDS 30.0%
AACCACAGTTAGAAATGAAA+TGG + chr4_2:63349865-63349884 None:intergenic 30.0%
ATTTCATTTCTAACTGTGGT+TGG - chr4_2:63349864-63349883 Msa0614350:CDS 30.0%
! CATTTTACATCTGTATACGT+AGG + chr4_2:63349893-63349912 None:intergenic 30.0%
TATATTTGTGAAATGTGGCT+TGG - chr4_2:63349929-63349948 Msa0614350:CDS 30.0%
GCAAAAATTGTCCATTTCAA+AGG - chr4_2:63350115-63350134 Msa0614350:intron 30.0%
! AGATGCTTTTGCAAATATGA+CGG + chr4_2:63350193-63350212 None:intergenic 30.0%
!! GATACTTTTTGCCAAAAGTA+TGG + chr4_2:63350373-63350392 None:intergenic 30.0%
! ATTTTATATAGGACGACTTC+TGG - chr4_2:63350513-63350532 Msa0614350:intron 30.0%
ATTTATGAGAATTGCAGTCA+CGG + chr4_2:63350633-63350652 None:intergenic 30.0%
TACTGATCATGAACCTAATA+CGG - chr4_2:63350730-63350749 Msa0614350:intron 30.0%
CATAAATGAACGAAACGTTA+TGG + chr4_2:63350874-63350893 None:intergenic 30.0%
CATAACGTTTCGTTCATTTA+TGG - chr4_2:63350872-63350891 Msa0614350:intron 30.0%
! CTCATTGCAAAAGTATAGAA+TGG - chr4_2:63350955-63350974 Msa0614350:intron 30.0%
GAAAGTTAGAAGGGAAAAAT+TGG - chr4_2:63350985-63351004 Msa0614350:intron 30.0%
AGTCCTTGTGAAATAAAAGA+AGG - chr4_2:63351074-63351093 Msa0614350:intron 30.0%
!! CATATTTTGGAAAAAAAGCG+AGG + chr4_2:63351108-63351127 None:intergenic 30.0%
ATACAACTACCGAATCATTA+GGG + chr4_2:63351146-63351165 None:intergenic 30.0%
AATACAACTACCGAATCATT+AGG + chr4_2:63351147-63351166 None:intergenic 30.0%
ATTAACCTTCTATGCAAATG+TGG + chr4_2:63351191-63351210 None:intergenic 30.0%
ACAAGGATCTCGATAAAAAA+AGG - chr4_2:63351232-63351251 Msa0614350:intron 30.0%
GTATCAAAAACTCAGTATCT+TGG + chr4_2:63351553-63351572 None:intergenic 30.0%
TACTTCTCATTCCTTTAAGT+AGG - chr4_2:63351651-63351670 Msa0614350:intron 30.0%
TTGGAATGAAATTAGTTGTG+TGG + chr4_2:63351724-63351743 None:intergenic 30.0%
! CACTCTTAGAATTTGGATTT+TGG + chr4_2:63351743-63351762 None:intergenic 30.0%
! CAAAATCCAAATTCTAAGAG+TGG - chr4_2:63351741-63351760 Msa0614350:intron 30.0%
TATTTGGACAAATGTGCTAT+TGG - chr4_2:63351768-63351787 Msa0614350:intron 30.0%
GGAAATATTAGGGATGAAAA+TGG + chr4_2:63351818-63351837 None:intergenic 30.0%
AGAATCTAGACTATTTGGAT+TGG + chr4_2:63351876-63351895 None:intergenic 30.0%
CACAAAGAATCTAGACTATT+TGG + chr4_2:63351881-63351900 None:intergenic 30.0%
ATCGTTCTTAATCAAAGGTA+TGG + chr4_2:63351950-63351969 None:intergenic 30.0%
ACAAGATCGTTCTTAATCAA+AGG + chr4_2:63351955-63351974 None:intergenic 30.0%
AACATTTCATTTATTCCTCC+AGG - chr4_2:63351979-63351998 Msa0614350:intron 30.0%
AAAGATAAAGGATCCACAAA+AGG - chr4_2:63352036-63352055 Msa0614350:intron 30.0%
TATATAGGATTTCCCATAGA+AGG - chr4_2:63352189-63352208 Msa0614350:five_prime_UTR 30.0%
TTATACATATGAAAGGAAGG+AGG + chr4_2:63352269-63352288 None:intergenic 30.0%
ATGAATCTATATCACAACCA+AGG + chr4_2:63352350-63352369 None:intergenic 30.0%
! TTGTAATATGGTTGATGTCA+TGG - chr4_2:63352385-63352404 Msa0614350:intron 30.0%
AGTTCATACACTATTGAACA+TGG - chr4_2:63352432-63352451 Msa0614350:five_prime_UTR 30.0%
GTTCATACACTATTGAACAT+GGG - chr4_2:63352433-63352452 Msa0614350:five_prime_UTR 30.0%
TATATAATCACACACTCGAT+CGG + chr4_2:63352472-63352491 None:intergenic 30.0%
! TCCCTTTTCTTTTCTCTTTT+TGG - chr4_2:63352674-63352693 Msa0614350:five_prime_UTR 30.0%
!!! CTTTTCTCTTTTTGGTTTGA+TGG - chr4_2:63352682-63352701 Msa0614350:five_prime_UTR 30.0%
TTGAATATTCTTTACTCCCT+CGG - chr4_2:63352734-63352753 Msa0614350:five_prime_UTR 30.0%
GAAACAAAAGAAACAGTGTC+AGG - chr4_2:63347250-63347269 Msa0614350:three_prime_UTR 35.0%
ATAAACAACAACACACGACA+CGG - chr4_2:63347289-63347308 Msa0614350:three_prime_UTR 35.0%
CTGAAACCGAAAAGTCAATA+AGG - chr4_2:63347316-63347335 Msa0614350:three_prime_UTR 35.0%
!! GAAGTCGTTTTGCTAAGAAA+TGG + chr4_2:63347353-63347372 None:intergenic 35.0%
GTGTGATTGTTACAACTACA+AGG + chr4_2:63347455-63347474 None:intergenic 35.0%
AAAAAGCAGAAGGAAGATCT+GGG + chr4_2:63347484-63347503 None:intergenic 35.0%
AAAAAAGCAGAAGGAAGATC+TGG + chr4_2:63347485-63347504 None:intergenic 35.0%
!!! TTTTTTATGGGGTGTTGTTC+TGG - chr4_2:63347566-63347585 Msa0614350:three_prime_UTR 35.0%
! TTGAAGGTTAGCTGAAGAAT+TGG - chr4_2:63347704-63347723 Msa0614350:three_prime_UTR 35.0%
! GTTTTCCTTTGGATTTCACA+AGG - chr4_2:63347889-63347908 Msa0614350:CDS 35.0%
! ACTATTAGTCTCATGTCAAG+TGG + chr4_2:63347967-63347986 None:intergenic 35.0%
!! TCCCCATGTTTTATTGAGTT+AGG - chr4_2:63348117-63348136 Msa0614350:intron 35.0%
CCCTAACTCAATAAAACATG+GGG + chr4_2:63348121-63348140 None:intergenic 35.0%
!! CCCCATGTTTTATTGAGTTA+GGG - chr4_2:63348118-63348137 Msa0614350:intron 35.0%
GTCCCTAACTCAATAAAACA+TGG + chr4_2:63348123-63348142 None:intergenic 35.0%
!! TCCCCATGTTTTATTGAGTT+AGG - chr4_2:63348117-63348136 Msa0614350:intron 35.0%
CCCTAACTCAATAAAACATG+GGG + chr4_2:63348121-63348140 None:intergenic 35.0%
!! CCCCATGTTTTATTGAGTTA+GGG - chr4_2:63348118-63348137 Msa0614350:intron 35.0%
GTCCCTAACTCAATAAAACA+TGG + chr4_2:63348123-63348142 None:intergenic 35.0%
! TCTTTGACATTTTCATACGC+AGG + chr4_2:63348244-63348263 None:intergenic 35.0%
AAAATTGTCAGCGACCAAAT+TGG - chr4_2:63348316-63348335 Msa0614350:intron 35.0%
AAATTGTCAGCGACCAAATT+GGG - chr4_2:63348317-63348336 Msa0614350:intron 35.0%
! TCATCAAATAGCGGCTATTT+TGG + chr4_2:63348420-63348439 None:intergenic 35.0%
CTGCTATACTCTTATGCTAT+AGG - chr4_2:63348486-63348505 Msa0614350:intron 35.0%
ATCAAAGTAAGCAACTCAGT+TGG + chr4_2:63348607-63348626 None:intergenic 35.0%
! TTACAAGCTTGCTTGGAATT+GGG + chr4_2:63348692-63348711 None:intergenic 35.0%
! CATAATCTTACAAGCTTGCT+TGG + chr4_2:63348699-63348718 None:intergenic 35.0%
ACCATCTTACCATCTTACAT+TGG - chr4_2:63348846-63348865 Msa0614350:intron 35.0%
ACCAATGTAAGATGGTAAGA+TGG + chr4_2:63348850-63348869 None:intergenic 35.0%
TTTATCTGTTCCTCTCTGTT+TGG + chr4_2:63349043-63349062 None:intergenic 35.0%
AAACAGAGAGGAACAGATAA+AGG - chr4_2:63349042-63349061 Msa0614350:intron 35.0%
AACAGACAGAAATCAAGACA+CGG - chr4_2:63349092-63349111 Msa0614350:intron 35.0%
GACACGAGGAAAATAACTAA+TGG - chr4_2:63349161-63349180 Msa0614350:CDS 35.0%
AATAGGAGTTTCAGATCCAT+TGG - chr4_2:63349202-63349221 Msa0614350:CDS 35.0%
GTGGAATAATTACAGGAATG+TGG + chr4_2:63349259-63349278 None:intergenic 35.0%
ATGAAGCGTGGAATAATTAC+AGG + chr4_2:63349266-63349285 None:intergenic 35.0%
TCTCATATCAATTAGAGCTG+CGG - chr4_2:63349323-63349342 Msa0614350:CDS 35.0%
! CACAAAATTGGCTTAAGGTA+GGG + chr4_2:63349379-63349398 None:intergenic 35.0%
! TCACAAAATTGGCTTAAGGT+AGG + chr4_2:63349380-63349399 None:intergenic 35.0%
! TACCTTAAGCCAATTTTGTG+AGG - chr4_2:63349379-63349398 Msa0614350:CDS 35.0%
! AACCTCACAAAATTGGCTTA+AGG + chr4_2:63349384-63349403 None:intergenic 35.0%
!! CCCTAAACCTAATTTTGAGA+TGG - chr4_2:63349412-63349431 Msa0614350:intron 35.0%
!!! ACCTAATTTTGAGATGGTAG+CGG - chr4_2:63349418-63349437 Msa0614350:intron 35.0%
CCTATCCCAAAAACAGATTT+AGG + chr4_2:63349451-63349470 None:intergenic 35.0%
!!! CCTAAATCTGTTTTTGGGAT+AGG - chr4_2:63349448-63349467 Msa0614350:intron 35.0%
! ATCAAGAGCATGACAAAAGT+GGG + chr4_2:63349489-63349508 None:intergenic 35.0%
ATGTTTAGTCCTAGATGTGA+GGG - chr4_2:63349507-63349526 Msa0614350:intron 35.0%
CAAATCTCTAGTTGAAGTGT+AGG + chr4_2:63349586-63349605 None:intergenic 35.0%
CAAAACTGCATAGTAAGTTG+AGG + chr4_2:63349640-63349659 None:intergenic 35.0%
! CAACTTACTATGCAGTTTTG+TGG - chr4_2:63349640-63349659 Msa0614350:intron 35.0%
!! ACTTACTATGCAGTTTTGTG+GGG - chr4_2:63349642-63349661 Msa0614350:intron 35.0%
!! GTTTCGTAAAATTTTGGCGT+AGG + chr4_2:63349685-63349704 None:intergenic 35.0%
! TGATTATGGGATGATGATGA+TGG - chr4_2:63349755-63349774 Msa0614350:CDS 35.0%
! TGGAGTTATCACTATTTCTC+TGG - chr4_2:63349775-63349794 Msa0614350:CDS 35.0%
CTCCATTTCATTTCTAACTG+TGG - chr4_2:63349860-63349879 Msa0614350:CDS 35.0%
!! GGACTTTTTGCTATATACGA+TGG - chr4_2:63350148-63350167 Msa0614350:intron 35.0%
! ACATTTGATTTCTCCGGAAA+AGG - chr4_2:63350283-63350302 Msa0614350:intron 35.0%
! CATTTGATTTCTCCGGAAAA+GGG - chr4_2:63350284-63350303 Msa0614350:intron 35.0%
! AATGAAGAAAAGCCCTTTTC+CGG + chr4_2:63350299-63350318 None:intergenic 35.0%
! CTCTCAAATTCCCATACTTT+TGG - chr4_2:63350359-63350378 Msa0614350:intron 35.0%
!! GCTTTAGAAATGGACATGAA+TGG + chr4_2:63350545-63350564 None:intergenic 35.0%
!! CGACTCATAAGCTTTAGAAA+TGG + chr4_2:63350555-63350574 None:intergenic 35.0%
ACATAGATCTCAGGGTTAAT+TGG + chr4_2:63350809-63350828 None:intergenic 35.0%
TTGTGTGATCTCATTTGCAT+TGG - chr4_2:63350897-63350916 Msa0614350:intron 35.0%
TGCATTGGACAATTATAGTG+CGG - chr4_2:63350912-63350931 Msa0614350:intron 35.0%
! TGGGTTGAATGAAAGTTAGA+AGG - chr4_2:63350975-63350994 Msa0614350:intron 35.0%
GGGTTGAATGAAAGTTAGAA+GGG - chr4_2:63350976-63350995 Msa0614350:intron 35.0%
ACAAACCACATTTGCATAGA+AGG - chr4_2:63351183-63351202 Msa0614350:intron 35.0%
AAACGAAAAAGAATCACGGT+GGG + chr4_2:63351291-63351310 None:intergenic 35.0%
AAAACGAAAAAGAATCACGG+TGG + chr4_2:63351292-63351311 None:intergenic 35.0%
! AAGTCTTATCTCACCAAATG+AGG + chr4_2:63351369-63351388 None:intergenic 35.0%
! TCATTTGGTGAGATAAGACT+TGG - chr4_2:63351368-63351387 Msa0614350:intron 35.0%
! TTCTTCATGTGGGTTATATC+AGG - chr4_2:63351419-63351438 Msa0614350:intron 35.0%
!! TTTTTGATACTTGCTAGCGA+TGG - chr4_2:63351563-63351582 Msa0614350:intron 35.0%
TGAAATGTCGGGGAAAAAAT+TGG + chr4_2:63351693-63351712 None:intergenic 35.0%
TACATGCCACTCTTAGAATT+TGG + chr4_2:63351750-63351769 None:intergenic 35.0%
! TTCTAAGAGTGGCATGTATT+TGG - chr4_2:63351752-63351771 Msa0614350:intron 35.0%
! TAGACTATTTGGATTGGAAG+TGG + chr4_2:63351870-63351889 None:intergenic 35.0%
CTTTGTGCATCAACCATAAT+TGG - chr4_2:63351894-63351913 Msa0614350:intron 35.0%
TCATTTATTCCTCCAGGTAA+TGG - chr4_2:63351985-63352004 Msa0614350:intron 35.0%
CCAAATAACGAGTAGAGTAT+GGG + chr4_2:63352222-63352241 None:intergenic 35.0%
TCCAAATAACGAGTAGAGTA+TGG + chr4_2:63352223-63352242 None:intergenic 35.0%
TTGAGATTCTTGAGTTTAGG+TGG - chr4_2:63352300-63352319 Msa0614350:intron 35.0%
GTTCAATAGTGTATGAACTG+TGG + chr4_2:63352431-63352450 None:intergenic 35.0%
!!! AGGAAGTCCATTTTTAGCTA+AGG - chr4_2:63352614-63352633 Msa0614350:five_prime_UTR 35.0%
ATAACAAGTTCACATCCCAA+AGG + chr4_2:63352649-63352668 None:intergenic 35.0%
!!! TTCTCTTTTTGGTTTGATGG+TGG - chr4_2:63352685-63352704 Msa0614350:five_prime_UTR 35.0%
TAAACAACAACACACGACAC+GGG - chr4_2:63347290-63347309 Msa0614350:three_prime_UTR 40.0%
!!! GGTTGCCCTTATTGACTTTT+CGG + chr4_2:63347325-63347344 None:intergenic 40.0%
! AGAAAATTTGAGGTGGGAGT+TGG - chr4_2:63347743-63347762 Msa0614350:three_prime_UTR 40.0%
TTCCTTTGGATTTCACAAGG+AGG - chr4_2:63347892-63347911 Msa0614350:CDS 40.0%
TACCTCCTTGTGAAATCCAA+AGG + chr4_2:63347897-63347916 None:intergenic 40.0%
!! TTCACAAGGAGGTACTTACT+TGG - chr4_2:63347903-63347922 Msa0614350:CDS 40.0%
!!! TTTTTTGTCGGGGACTAAGT+TGG - chr4_2:63348285-63348304 Msa0614350:intron 40.0%
CAATCAGCGTTGTCAAATAG+AGG + chr4_2:63348522-63348541 None:intergenic 40.0%
GGAGAGAAAAGAGACATTGA+AGG + chr4_2:63348586-63348605 None:intergenic 40.0%
! CTTACAAGCTTGCTTGGAAT+TGG + chr4_2:63348693-63348712 None:intergenic 40.0%
ACAGACAGAAATCAAGACAC+GGG - chr4_2:63349093-63349112 Msa0614350:intron 40.0%
ATCCAAACAAGTTTGACACG+AGG - chr4_2:63349147-63349166 Msa0614350:CDS 40.0%
! TTCCTCGTGTCAAACTTGTT+TGG + chr4_2:63349152-63349171 None:intergenic 40.0%
AGATCCATTGGAACTTGTGA+TGG - chr4_2:63349214-63349233 Msa0614350:CDS 40.0%
TAGACCATCACAAGTTCCAA+TGG + chr4_2:63349221-63349240 None:intergenic 40.0%
AAGCCTTACAAGGACTAACT+AGG + chr4_2:63349349-63349368 None:intergenic 40.0%
TCCGCTACCATCTCAAAATT+AGG + chr4_2:63349422-63349441 None:intergenic 40.0%
! CATCAAGAGCATGACAAAAG+TGG + chr4_2:63349490-63349509 None:intergenic 40.0%
GATGTTTAGTCCTAGATGTG+AGG - chr4_2:63349506-63349525 Msa0614350:intron 40.0%
TATATACCTCCCTCACATCT+AGG + chr4_2:63349519-63349538 None:intergenic 40.0%
TTCAACTAGAGATTTGACCC+AGG - chr4_2:63349590-63349609 Msa0614350:intron 40.0%
! AAGCCTAATAAGCATTGCCT+GGG + chr4_2:63349610-63349629 None:intergenic 40.0%
!! TAAAATTTTGGCGTAGGGCT+AGG + chr4_2:63349679-63349698 None:intergenic 40.0%
CCACGATAAAAGAAACCGAA+TGG + chr4_2:63349710-63349729 None:intergenic 40.0%
! CCATTCGGTTTCTTTTATCG+TGG - chr4_2:63349707-63349726 Msa0614350:intron 40.0%
AATTCATGCAACTCTGGCAA+AGG - chr4_2:63350010-63350029 Msa0614350:intron 40.0%
!! TATGGCTTCAGCCTTGTTAA+AGG - chr4_2:63350058-63350077 Msa0614350:intron 40.0%
!! ATGGCTTCAGCCTTGTTAAA+GGG - chr4_2:63350059-63350078 Msa0614350:intron 40.0%
! CTAGCTCTTGTCCTTTGAAA+TGG + chr4_2:63350129-63350148 None:intergenic 40.0%
CATTTCAAAGGACAAGAGCT+AGG - chr4_2:63350127-63350146 Msa0614350:intron 40.0%
! TGCCTCACATTTGATTTCTC+CGG - chr4_2:63350277-63350296 Msa0614350:intron 40.0%
TTCCGGAGAAATCAAATGTG+AGG + chr4_2:63350282-63350301 None:intergenic 40.0%
TCTTACTCACAGTCCTGATT+TGG - chr4_2:63350589-63350608 Msa0614350:intron 40.0%
CTTACTCACAGTCCTGATTT+GGG - chr4_2:63350590-63350609 Msa0614350:intron 40.0%
! TTACTCACAGTCCTGATTTG+GGG - chr4_2:63350591-63350610 Msa0614350:intron 40.0%
TCAGGGTTAATTGGAAAACC+TGG + chr4_2:63350800-63350819 None:intergenic 40.0%
CCAACACAACATAGATCTCA+GGG + chr4_2:63350817-63350836 None:intergenic 40.0%
ACCAACACAACATAGATCTC+AGG + chr4_2:63350818-63350837 None:intergenic 40.0%
GCATTGGACAATTATAGTGC+GGG - chr4_2:63350913-63350932 Msa0614350:intron 40.0%
AACGAAAAAGAATCACGGTG+GGG + chr4_2:63351290-63351309 None:intergenic 40.0%
CTTATCTCACCAAATGAGGT+CGG + chr4_2:63351365-63351384 None:intergenic 40.0%
AGCATACTGAATGTCAGGAT+CGG + chr4_2:63351522-63351541 None:intergenic 40.0%
ACATCAGCATACTGAATGTC+AGG + chr4_2:63351527-63351546 None:intergenic 40.0%
TGGATAGTCGTTGAAATGTC+GGG + chr4_2:63351704-63351723 None:intergenic 40.0%
GTGGATAGTCGTTGAAATGT+CGG + chr4_2:63351705-63351724 None:intergenic 40.0%
! AGTTGTTTAGCTGCCTTTTG+TGG + chr4_2:63352052-63352071 None:intergenic 40.0%
AGCTAAACAACTAGCTACTG+AGG - chr4_2:63352060-63352079 Msa0614350:intron 40.0%
TGCGTTGTAGTTCGTTTCAA+GGG - chr4_2:63352115-63352134 Msa0614350:intron 40.0%
TTCGTTTCAAGGGATGAAAG+AGG - chr4_2:63352125-63352144 Msa0614350:intron 40.0%
TCGTTTCAAGGGATGAAAGA+GGG - chr4_2:63352126-63352145 Msa0614350:intron 40.0%
ATGGGATTGCATCCTTCTAT+GGG + chr4_2:63352204-63352223 None:intergenic 40.0%
TATGGGATTGCATCCTTCTA+TGG + chr4_2:63352205-63352224 None:intergenic 40.0%
CCCATACTCTACTCGTTATT+TGG - chr4_2:63352219-63352238 Msa0614350:five_prime_UTR 40.0%
TTAATCTCCGGTTGCAATTC+AGG - chr4_2:63352502-63352521 Msa0614350:five_prime_UTR 40.0%
CTTGATTTCATAAGCATGCC+CGG + chr4_2:63352594-63352613 None:intergenic 40.0%
GGCATGCTTATGAAATCAAG+AGG - chr4_2:63352594-63352613 Msa0614350:five_prime_UTR 40.0%
GAGGTGGGAGTTGGAATATA+TGG - chr4_2:63347752-63347771 Msa0614350:three_prime_UTR 45.0%
! GAATTTGTTCCTCACCTGAC+TGG + chr4_2:63347799-63347818 None:intergenic 45.0%
AGGTACTTACTTGGTTGACC+TGG - chr4_2:63347912-63347931 Msa0614350:CDS 45.0%
TTGTCAAATAGAGGCTGCAG+TGG + chr4_2:63348513-63348532 None:intergenic 45.0%
!! AGAGAATGGTGTCGTCATGA+AGG - chr4_2:63348789-63348808 Msa0614350:intron 45.0%
CATGAATTGAGACGGGATCA+TGG + chr4_2:63348897-63348916 None:intergenic 45.0%
CAGTCATGAACCAAACAGAG+AGG - chr4_2:63349030-63349049 Msa0614350:intron 45.0%
! TATGCACAGTACCGAGTTTG+AGG - chr4_2:63349285-63349304 Msa0614350:CDS 45.0%
! ACAGTACCGAGTTTGAGGTA+GGG - chr4_2:63349290-63349309 Msa0614350:CDS 45.0%
TTTAGTCCTAGATGTGAGGG+AGG - chr4_2:63349510-63349529 Msa0614350:intron 45.0%
CACACACCTCATACCTCTAT+TGG + chr4_2:63349555-63349574 None:intergenic 45.0%
! AGAGGTATGAGGTGTGTGTT+TGG - chr4_2:63349557-63349576 Msa0614350:intron 45.0%
TGACCCAGGCAATGCTTATT+AGG - chr4_2:63349604-63349623 Msa0614350:intron 45.0%
! CAAGCCTAATAAGCATTGCC+TGG + chr4_2:63349611-63349630 None:intergenic 45.0%
!! CAGTTTTGTGGGGATGAGTT+AGG - chr4_2:63349652-63349671 Msa0614350:intron 45.0%
! TCGTGGTTGTTTGTGCTGAT+AGG - chr4_2:63349724-63349743 Msa0614350:CDS 45.0%
AGGCTGAAGCCATATTTGAC+CGG + chr4_2:63350052-63350071 None:intergenic 45.0%
!! GGTTGGCTTTCCCTTTAACA+AGG + chr4_2:63350072-63350091 None:intergenic 45.0%
ATAGTCCTCCATTGGATGGT+TGG + chr4_2:63350089-63350108 None:intergenic 45.0%
TGCTATATACGATGGACACC+TGG - chr4_2:63350156-63350175 Msa0614350:intron 45.0%
GCTATATACGATGGACACCT+GGG - chr4_2:63350157-63350176 Msa0614350:intron 45.0%
AGCTTATGAGTCGACAGATC+AGG - chr4_2:63350562-63350581 Msa0614350:intron 45.0%
AAACTATGGGTCGCCAATGT+TGG - chr4_2:63350659-63350678 Msa0614350:intron 45.0%
CATGAACCTAATACGGAACG+TGG - chr4_2:63350737-63350756 Msa0614350:intron 45.0%
CCCTGAGATCTATGTTGTGT+TGG - chr4_2:63350814-63350833 Msa0614350:intron 45.0%
ACGAAAAAGAATCACGGTGG+GGG + chr4_2:63351289-63351308 None:intergenic 45.0%
GGAGATGTTGCTAGAGTGAA+CGG - chr4_2:63351440-63351459 Msa0614350:intron 45.0%
GAGATGTTGCTAGAGTGAAC+GGG - chr4_2:63351441-63351460 Msa0614350:intron 45.0%
! TACTTGCTAGCGATGGTCTA+TGG - chr4_2:63351570-63351589 Msa0614350:intron 45.0%
GGATAGTCGTTGAAATGTCG+GGG + chr4_2:63351703-63351722 None:intergenic 45.0%
CTATTGGCACTGCATCATGT+AGG - chr4_2:63351784-63351803 Msa0614350:intron 45.0%
! CTTCTTGATTCGCCATTACC+TGG + chr4_2:63352000-63352019 None:intergenic 45.0%
! GGCATTGAACAGAGACAGTA+AGG - chr4_2:63352081-63352100 Msa0614350:intron 45.0%
CTTGAAACGAACTACAACGC+AGG + chr4_2:63352116-63352135 None:intergenic 45.0%
CTGCGTTGTAGTTCGTTTCA+AGG - chr4_2:63352114-63352133 Msa0614350:intron 45.0%
ATGCTCACCTGAATTGCAAC+CGG + chr4_2:63352512-63352531 None:intergenic 45.0%
GCGAACGCCTTAGCTAAAAA+TGG + chr4_2:63352624-63352643 None:intergenic 45.0%
ACAAGTTCACATCCCAAAGG+TGG + chr4_2:63352646-63352665 None:intergenic 45.0%
! TTGTTGCTTCAGCTCCAGTC+AGG - chr4_2:63347782-63347801 Msa0614350:three_prime_UTR 50.0%
GGTACTGTGCATATGAAGCG+TGG + chr4_2:63349278-63349297 None:intergenic 50.0%
! CACAGTACCGAGTTTGAGGT+AGG - chr4_2:63349289-63349308 Msa0614350:CDS 50.0%
! CAGTACCGAGTTTGAGGTAG+GGG - chr4_2:63349291-63349310 Msa0614350:CDS 50.0%
AAGCACCCCTACCTCAAACT+CGG + chr4_2:63349299-63349318 None:intergenic 50.0%
CGGCCTAGTTAGTCCTTGTA+AGG - chr4_2:63349343-63349362 Msa0614350:CDS 50.0%
GGGACTACTCAAGCCTTACA+AGG + chr4_2:63349359-63349378 None:intergenic 50.0%
GGGCGTAATTCATGCAACTC+TGG - chr4_2:63350004-63350023 Msa0614350:intron 50.0%
AGTCAGTCGCCGGTCAAATA+TGG - chr4_2:63350040-63350059 Msa0614350:intron 50.0%
AGGGAAAGCCAACCATCCAA+TGG - chr4_2:63350078-63350097 Msa0614350:intron 50.0%
GAAAGCCAACCATCCAATGG+AGG - chr4_2:63350081-63350100 Msa0614350:intron 50.0%
CGTGATAGTCCTCCATTGGA+TGG + chr4_2:63350093-63350112 None:intergenic 50.0%
GCTACGTGATAGTCCTCCAT+TGG + chr4_2:63350097-63350116 None:intergenic 50.0%
ACTCCCGAGCAGTTCTATCA+AGG - chr4_2:63350684-63350703 Msa0614350:intron 50.0%
CTCCCGAGCAGTTCTATCAA+GGG - chr4_2:63350685-63350704 Msa0614350:intron 50.0%
TCCCGAGCAGTTCTATCAAG+GGG - chr4_2:63350686-63350705 Msa0614350:intron 50.0%
TCCCCTTGATAGAACTGCTC+GGG + chr4_2:63350690-63350709 None:intergenic 50.0%
CTCCCCTTGATAGAACTGCT+CGG + chr4_2:63350691-63350710 None:intergenic 50.0%
GAGCAGTTCTATCAAGGGGA+GGG - chr4_2:63350690-63350709 Msa0614350:intron 50.0%
AGCAGTTCTATCAAGGGGAG+GGG - chr4_2:63350691-63350710 Msa0614350:intron 50.0%
ATGCTGCCACGTTCCGTATT+AGG + chr4_2:63350746-63350765 None:intergenic 50.0%
! GGCTTTGTCTCAAACATGCC+AGG - chr4_2:63350779-63350798 Msa0614350:intron 50.0%
GTGGGGGTTGTGTCAACAAT+TGG + chr4_2:63351273-63351292 None:intergenic 50.0%
TCCATGAAGCCGACCTCATT+TGG - chr4_2:63351353-63351372 Msa0614350:intron 50.0%
! ACCAAATGAGGTCGGCTTCA+TGG + chr4_2:63351357-63351376 None:intergenic 50.0%
CTTGCGGTTTCTCGAGCATT+TGG - chr4_2:63351467-63351486 Msa0614350:intron 50.0%
! CGGATCTCAGGTGTGTTTTG+AGG + chr4_2:63351502-63351521 None:intergenic 50.0%
GAATGTCAGGATCGGATCTC+AGG + chr4_2:63351514-63351533 None:intergenic 50.0%
TGCTAGCGATGGTCTATGGA+AGG - chr4_2:63351574-63351593 Msa0614350:intron 50.0%
! CTTGATTCGCCATTACCTGG+AGG + chr4_2:63351997-63352016 None:intergenic 50.0%
GTCATGGAGCAGTGTGATGA+TGG - chr4_2:63352401-63352420 Msa0614350:intron 50.0%
!! TGGAGCAGTGTGATGATGGA+TGG - chr4_2:63352405-63352424 Msa0614350:intron 50.0%
GGTTGCAATTCAGGTGAGCA+TGG - chr4_2:63352511-63352530 Msa0614350:five_prime_UTR 50.0%
ATGACGGTACACTGTCTCCC+AGG + chr4_2:63350177-63350196 None:intergenic 55.0%
TGCTCGGGAGTCTCCAACAT+TGG + chr4_2:63350675-63350694 None:intergenic 55.0%
CGAGCAGTTCTATCAAGGGG+AGG - chr4_2:63350689-63350708 Msa0614350:intron 55.0%
TCTATCAAGGGGAGGGGTAG+CGG - chr4_2:63350697-63350716 Msa0614350:intron 55.0%
! CGTGGCAGCATTGAGAACAG+AGG - chr4_2:63350755-63350774 Msa0614350:intron 55.0%
! GGCAGCATTGAGAACAGAGG+CGG - chr4_2:63350758-63350777 Msa0614350:intron 55.0%
TAGAGTGAACGGGCAGCTTG+CGG - chr4_2:63351451-63351470 Msa0614350:intron 55.0%
TCATAAGCATGCCCGGCGAA+GGG + chr4_2:63352587-63352606 None:intergenic 55.0%
TTCATAAGCATGCCCGGCGA+AGG + chr4_2:63352588-63352607 None:intergenic 55.0%
! CTAAGGCGTTCGCCACCTTT+GGG - chr4_2:63352631-63352650 Msa0614350:five_prime_UTR 55.0%
GCTTCAGCTCCAGTCAGGTG+AGG - chr4_2:63347787-63347806 Msa0614350:three_prime_UTR 60.0%
AGGCAAGAGCAGTCAGTCGC+CGG - chr4_2:63350030-63350049 Msa0614350:intron 60.0%
!! CACAGTCCTGATTTGGGGCG+AGG - chr4_2:63350596-63350615 Msa0614350:intron 60.0%
!! AGTCCTGATTTGGGGCGAGG+AGG - chr4_2:63350599-63350618 Msa0614350:intron 60.0%
GATCCTCCTCGCCCCAAATC+AGG + chr4_2:63350605-63350624 None:intergenic 60.0%
ATAAGCATGCCCGGCGAAGG+GGG + chr4_2:63352585-63352604 None:intergenic 60.0%
CATAAGCATGCCCGGCGAAG+GGG + chr4_2:63352586-63352605 None:intergenic 60.0%
! GCTAAGGCGTTCGCCACCTT+TGG - chr4_2:63352630-63352649 Msa0614350:five_prime_UTR 60.0%
TTGACCCCCACCCCCTTCGC+CGG - chr4_2:63352572-63352591 Msa0614350:five_prime_UTR 70.0%
TGACCCCCACCCCCTTCGCC+GGG - chr4_2:63352573-63352592 Msa0614350:five_prime_UTR 75.0%
ATGCCCGGCGAAGGGGGTGG+GGG + chr4_2:63352579-63352598 None:intergenic 75.0%
CATGCCCGGCGAAGGGGGTG+GGG + chr4_2:63352580-63352599 None:intergenic 75.0%
GCATGCCCGGCGAAGGGGGT+GGG + chr4_2:63352581-63352600 None:intergenic 75.0%
AGCATGCCCGGCGAAGGGGG+TGG + chr4_2:63352582-63352601 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 63347188 63352764 63347188 ID=Msa0614350;Name=Msa0614350
chr4_2 mRNA 63347188 63352764 63347188 ID=Msa0614350-mRNA-1;Parent=Msa0614350;Name=Msa0614350-mRNA-1;_AED=0.04;_eAED=0.04;_QI=404|0.8|0.66|1|0.8|0.83|6|623|281
chr4_2 exon 63347188 63347951 63347188 ID=Msa0614350-mRNA-1:exon:17647;Parent=Msa0614350-mRNA-1
chr4_2 exon 63348357 63348485 63348357 ID=Msa0614350-mRNA-1:exon:17646;Parent=Msa0614350-mRNA-1
chr4_2 exon 63349117 63349428 63349117 ID=Msa0614350-mRNA-1:exon:17645;Parent=Msa0614350-mRNA-1
chr4_2 exon 63349718 63349948 63349718 ID=Msa0614350-mRNA-1:exon:17644;Parent=Msa0614350-mRNA-1
chr4_2 exon 63352149 63352242 63352149 ID=Msa0614350-mRNA-1:exon:17643;Parent=Msa0614350-mRNA-1
chr4_2 exon 63352422 63352764 63352422 ID=Msa0614350-mRNA-1:exon:17642;Parent=Msa0614350-mRNA-1
chr4_2 five_prime_UTR 63352422 63352764 63352422 ID=Msa0614350-mRNA-1:five_prime_utr;Parent=Msa0614350-mRNA-1
chr4_2 five_prime_UTR 63352182 63352242 63352182 ID=Msa0614350-mRNA-1:five_prime_utr;Parent=Msa0614350-mRNA-1
chr4_2 CDS 63352149 63352181 63352149 ID=Msa0614350-mRNA-1:cds;Parent=Msa0614350-mRNA-1
chr4_2 CDS 63349718 63349948 63349718 ID=Msa0614350-mRNA-1:cds;Parent=Msa0614350-mRNA-1
chr4_2 CDS 63349117 63349428 63349117 ID=Msa0614350-mRNA-1:cds;Parent=Msa0614350-mRNA-1
chr4_2 CDS 63348357 63348485 63348357 ID=Msa0614350-mRNA-1:cds;Parent=Msa0614350-mRNA-1
chr4_2 CDS 63347811 63347951 63347811 ID=Msa0614350-mRNA-1:cds;Parent=Msa0614350-mRNA-1
chr4_2 three_prime_UTR 63347188 63347810 63347188 ID=Msa0614350-mRNA-1:three_prime_utr;Parent=Msa0614350-mRNA-1
Gene Sequence

>Msa0614350

ATGGACAGTCTTTGTTGCTTCAGCTCCAGTCAGGGGCGTAATTCATGCAACTCTGGCAAAGGCAAGAGCAGTCAGTCGCCGGTCAAATATGGCTTCAGCCTTGTTAAAGGGAAAGCCAACCATCCAATGGAGGACTATCACGTAGCAAAAATTGTCCATTTCAAAGGACAAGAGCTAGGACTTTTTGCTATATACGATGGACACCTGGGAGACAGTGTACCGTCATATTTGCAAAAGCATCTCTTTTCTAATATCTTGAAGGAAGACGACTTCTGGAATGATCCATTCATGTCCATTTCTAAAGCTTATGAGTCGACAGATCAGGCAATTCTTACTCACAGTCCTGATTTGGGGCGAGGAGGATCAACTGCCGTGACTGCAATTCTCATAAATAATCAGAAACTATGGGTCGCCAATGTTGGAGACTCCCGAGCAGTTCTATCAAGGGGAGGGGTAGCGGTACAAATGTCTACTGATCATGAACCTAATACGGAACGTGGCAGCATTGAGAACAGAGGCGGCTTTGTCTCAAACATGCCAGGTTTTCCAATTAACCCTGAGATCTATGTTGTGTTGCTTGCGGTTTCTCGAGCATTTGGAGACAAAAACCTCAAAACACACCTGAGATCCGATCCTGACATTCAGTATGCTGATGTTAACCAAGATACTGAGTTTTTGATACTTGCTAGCGATGGTCTATGGAAGGTAATGGCGAATCAAGAAGCCGTTGATATTGCAAAAAAGATAAAGGATCCACAAAAGGCAGCTAAACAACTAGCTACTGAGGCATTGAACAGAGACAGTAAGGATGATATTTCCTGCGTTGTAGTTCGTTTCAAGGGATGA
Protein sequence

>Msa0614350

MDSLCCFSSSQGRNSCNSGKGKSSQSPVKYGFSLVKGKANHPMEDYHVAKIVHFKGQELGLFAIYDGHLGDSVPSYLQKHLFSNILKEDDFWNDPFMSISKAYESTDQAILTHSPDLGRGGSTAVTAILINNQKLWVANVGDSRAVLSRGGVAVQMSTDHEPNTERGSIENRGGFVSNMPGFPINPEIYVVLLAVSRAFGDKNLKTHLRSDPDIQYADVNQDTEFLILASDGLWKVMANQEAVDIAKKIKDPQKAAKQLATEALNRDSKDDISCVVVRFKG*