AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0625100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0625100 MtrunA17_Chr4g0051521 97.039 439 11 2 1 438 1 438 0.0 875
Msa0625100 MtrunA17_Chr4g0000371 99.357 311 2 0 128 438 5 315 0.0 647
Msa0625100 MtrunA17_Chr4g0051511 79.944 354 9 3 129 435 6 344 0.0 556
Msa0625100 MtrunA17_Chr4g0000381 95.413 109 5 0 1 109 1 109 3.61e-69 215
Msa0625100 MtrunA17_Chr1g0179361 29.365 378 240 8 68 438 12 369 8.11e-42 152
Msa0625100 MtrunA17_Chr4g0051501 86.486 74 8 2 1 73 1 73 3.46e-34 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0625100 AT1G50430.1 83.063 431 73 0 8 438 2 432 0.0 759
Msa0625100 AT1G50430.2 83.063 431 72 1 8 438 2 431 0.0 755
Msa0625100 AT3G52940.1 29.921 381 234 9 68 438 12 369 1.14e-48 170
Msa0625100 AT3G52940.2 28.444 225 141 7 68 282 12 226 6.22e-20 89.4

Find 106 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAGGGAGATTTCTATTTA+TGG 0.135633 4_3:-4096304 None:intergenic
CTATGCATCTTTACCTTTGA+TGG 0.168728 4_3:-4094314 None:intergenic
GCACCATCTTCTACTGATTC+TGG 0.211719 4_3:+4092464 Msa0625100:CDS
TCTTGATAGTATGAAGAAAA+TGG 0.213254 4_3:+4093590 Msa0625100:intron
TAACATTCGCTTACAAAATA+AGG 0.224015 4_3:-4096221 None:intergenic
AAATATTAGCTGCATTCTTC+TGG 0.228561 4_3:+4095291 Msa0625100:CDS
GCGAATGTTATGATTTAAAA+TGG 0.252269 4_3:+4096234 Msa0625100:three_prime_UTR
CAGCATAAACAGCTATAATT+TGG 0.256261 4_3:-4090487 None:intergenic
AACAATCGTTTATGATCATT+TGG 0.260995 4_3:+4092278 Msa0625100:CDS
TCACTTCAGCTTCTTCTTCC+TGG 0.263974 4_3:+4090521 Msa0625100:CDS
AAGAATGCAGCTAATATTTC+GGG 0.270796 4_3:-4095287 None:intergenic
CTTCCTGGTCAAACTGTTTA+CGG 0.284937 4_3:+4090536 Msa0625100:CDS
TTGCTGGGGCTGTTTGGTTT+GGG 0.285386 4_3:+4093975 Msa0625100:CDS
TTTGCTGGGGCTGTTTGGTT+TGG 0.288712 4_3:+4093974 Msa0625100:CDS
TTTGATTATTTAAACAATAA+TGG 0.292208 4_3:+4090416 Msa0625100:CDS
GAAGAATGCAGCTAATATTT+CGG 0.298216 4_3:-4095288 None:intergenic
TTATATTTGCTGGGGCTGTT+TGG 0.304151 4_3:+4093969 Msa0625100:CDS
TCTGGTGGGAAGCTGGATAC+TGG 0.304373 4_3:+4093675 Msa0625100:CDS
ACAATCGTTTATGATCATTT+GGG 0.320331 4_3:+4092279 Msa0625100:CDS
CGGTAACCGCCCTGTCTATA+AGG 0.331256 4_3:+4090574 Msa0625100:CDS
AATGATGTCATGGGCTGTTC+TGG 0.333436 4_3:+4093098 Msa0625100:CDS
GCCTCATATACCACTGCTTC+CGG 0.355351 4_3:+4094468 Msa0625100:CDS
GTTAGTAAGAAGATCGAAAA+TGG 0.358318 4_3:+4090145 Msa0625100:exon
CGGTTACCGGTAGGAGAAAT+AGG 0.360461 4_3:-4090560 None:intergenic
TGAGGGAGATTTCTATTTAT+GGG 0.364154 4_3:-4096303 None:intergenic
CCTCATATACCACTGCTTCC+GGG 0.368880 4_3:+4094469 Msa0625100:CDS
TTTGTATTTCTTCAGGCAAA+TGG 0.379608 4_3:+4091147 Msa0625100:intron
TATATTCCACACTCAACTTT+GGG 0.397950 4_3:+4092307 Msa0625100:CDS
TGCTGCATATTTAGTTACTT+TGG 0.407451 4_3:+4091173 Msa0625100:CDS
CTTGATAGTATGAAGAAAAT+GGG 0.409251 4_3:+4093591 Msa0625100:intron
AATGATCATAAACGATTGTT+GGG 0.411459 4_3:-4092275 None:intergenic
AAATGATCATAAACGATTGT+TGG 0.417130 4_3:-4092276 None:intergenic
CTTATAGACAGGGCGGTTAC+CGG 0.418802 4_3:-4090573 None:intergenic
ATATATTCCACACTCAACTT+TGG 0.422367 4_3:+4092306 Msa0625100:CDS
TTATATTTGATAGGGTCATT+TGG 0.422502 4_3:+4092442 Msa0625100:intron
AGTCATCATCAATATATTCC+TGG 0.424853 4_3:-4096081 None:intergenic
AGAAATATCACGTAGAAGTA+AGG 0.430755 4_3:-4095424 None:intergenic
AAAGCTAGAAGTGTTGGTTT+AGG 0.432868 4_3:-4090464 None:intergenic
GTCAACCATCCAGTGAATCT+TGG 0.433126 4_3:+4094033 Msa0625100:CDS
CAAGAGTTTCGTAGGACAAA+TGG 0.441736 4_3:+4094266 Msa0625100:CDS
TTACTTACATTGCACTTTGG+CGG 0.449956 4_3:+4091196 Msa0625100:CDS
CTTACGTGATTGAATAGAGC+TGG 0.458940 4_3:-4095320 None:intergenic
TATATTGATGATGACTTGTC+TGG 0.471587 4_3:+4096088 Msa0625100:exon
GTACCTTACAGAATCATTCC+AGG 0.476122 4_3:+4096063 Msa0625100:CDS
GTTTACCATTGCATCTTAAG+TGG 0.477376 4_3:-4096164 None:intergenic
CCATCAGTGTATACATCTCC+TGG 0.477762 4_3:+4094000 Msa0625100:CDS
CCCGGAAGCAGTGGTATATG+AGG 0.482468 4_3:-4094469 None:intergenic
TACGGTCCTATTTCTCCTAC+CGG 0.485371 4_3:+4090554 Msa0625100:CDS
ATTTGGAAAGCTAGAAGTGT+TGG 0.486102 4_3:-4090470 None:intergenic
ACCTGGGTGCCAAGATTCAC+TGG 0.487320 4_3:-4094042 None:intergenic
TGGTTGACAAGGTACATTCC+AGG 0.489773 4_3:-4094018 None:intergenic
CTTGACAGAATTCTCCTCCA+TGG 0.491036 4_3:+4096331 Msa0625100:three_prime_UTR
TTAAACAATAATGGTTTACA+AGG 0.495899 4_3:+4090425 Msa0625100:CDS
CATGGCAGCAAGTGAAGGAT+AGG 0.502904 4_3:-4096114 None:intergenic
GACACACAGACCTTATAGAC+AGG 0.514299 4_3:-4090584 None:intergenic
ATTCCTGGAATGATTCTGTA+AGG 0.518813 4_3:-4096066 None:intergenic
ATGGTTTACGATGACGGCTA+TGG 0.519049 4_3:+4090373 Msa0625100:CDS
CATGCAGGTATGGAAAGTAC+TGG 0.526601 4_3:+4096022 Msa0625100:intron
CCAGGAGATGTATACACTGA+TGG 0.529275 4_3:-4094000 None:intergenic
ACTATGATTGTGACAGGCAA+AGG 0.530436 4_3:+4094243 Msa0625100:CDS
ATGAAGATGGTTTACGATGA+CGG 0.530950 4_3:+4090367 Msa0625100:intron
ACTGGAAACTCTATTGCGAC+AGG 0.531995 4_3:+4096040 Msa0625100:CDS
TGTAAATACTACATTAATGC+TGG 0.542689 4_3:+4093634 Msa0625100:CDS
TCTACTGATTCTGGTTCAAG+TGG 0.545372 4_3:+4092473 Msa0625100:CDS
ATGGAGCTCTATCCACGCAT+TGG 0.545997 4_3:+4093033 Msa0625100:CDS
ACATCAACTATGATTGTGAC+AGG 0.553357 4_3:+4094237 Msa0625100:CDS
TTACGTGATTGAATAGAGCT+GGG 0.555286 4_3:-4095319 None:intergenic
CTCATATACCACTGCTTCCG+GGG 0.558627 4_3:+4094470 Msa0625100:CDS
GAGTGGTGAATGAACTGTTT+CGG 0.559163 4_3:-4090186 None:intergenic
CAATCGTTTATGATCATTTG+GGG 0.573140 4_3:+4092280 Msa0625100:CDS
TTCTGCCACTTAAGATGCAA+TGG 0.573566 4_3:+4096159 Msa0625100:three_prime_UTR
AGTCGAAGACGCTAAGTCGT+AGG 0.577282 4_3:+4090121 Msa0625100:five_prime_UTR
GTAAACATGGCAGCAAGTGA+AGG 0.580459 4_3:-4096119 None:intergenic
GCAGATTTGGAATGATGTCA+TGG 0.581369 4_3:+4093088 Msa0625100:CDS
AGTCCTCGTATATATGAGCT+AGG 0.581749 4_3:+4096354 Msa0625100:three_prime_UTR
TGGTTACTTACATTGCACTT+TGG 0.584119 4_3:+4091193 Msa0625100:CDS
TCCAGTGAATCTTGGCACCC+AGG 0.587162 4_3:+4094041 Msa0625100:CDS
GAACCAGAATCAGTAGAAGA+TGG 0.593438 4_3:-4092467 None:intergenic
TACAGTAGATTGACGAAAGG+AGG 0.597491 4_3:-4090248 None:intergenic
TTTACGATGACGGCTATGGA+TGG 0.598888 4_3:+4090377 Msa0625100:CDS
ACCATCCAGAGGTTAAAAGA+AGG 0.603425 4_3:-4094506 None:intergenic
CTCAACCTGCTTTATGCAGT+AGG 0.603786 4_3:-4093127 None:intergenic
ATGGATATTGCACACGATCG+AGG 0.603895 4_3:+4093704 Msa0625100:CDS
TCATATATACGAGGACTCCA+TGG 0.612699 4_3:-4096348 None:intergenic
CTGGGGAAAAGCTCCATCAA+AGG 0.613205 4_3:+4094301 Msa0625100:CDS
ACTTACCTACTGCATAAAGC+AGG 0.622001 4_3:+4093122 Msa0625100:CDS
ACTTACAGTAGATTGACGAA+AGG 0.623164 4_3:-4090251 None:intergenic
CTACTGATTCTGGTTCAAGT+GGG 0.624307 4_3:+4092474 Msa0625100:CDS
AGTAAGAAGATCGAAAATGG+TGG 0.624363 4_3:+4090148 Msa0625100:exon
AAAGCTCCCAAAGTTGAGTG+TGG 0.627248 4_3:-4092313 None:intergenic
GGCAAAGGCAAGAGTTTCGT+AGG 0.627927 4_3:+4094258 Msa0625100:CDS
GGGTGCCAAGATTCACTGGA+TGG 0.644744 4_3:-4094038 None:intergenic
CAGATTTGGAATGATGTCAT+GGG 0.645422 4_3:+4093089 Msa0625100:CDS
AAGGGATACGTACCATCCAG+AGG 0.650541 4_3:-4094517 None:intergenic
GGACCGTAAACAGTTTGACC+AGG 0.651599 4_3:-4090539 None:intergenic
GATTCACTGGATGGTTGACA+AGG 0.654390 4_3:-4094029 None:intergenic
TAGACAGGGCGGTTACCGGT+AGG 0.656132 4_3:-4090569 None:intergenic
CTGGAAACTCTATTGCGACA+GGG 0.658826 4_3:+4096041 Msa0625100:CDS
AATCGTTTATGATCATTTGG+GGG 0.662804 4_3:+4092281 Msa0625100:CDS
ATAGAAGCATATGTGACGAG+TGG 0.675409 4_3:-4090203 None:intergenic
ACACACAGACCTTATAGACA+GGG 0.685969 4_3:-4090583 None:intergenic
AGCTGGATACTGGAACACGA+TGG 0.692506 4_3:+4093685 Msa0625100:CDS
ATTCCTAGCTCATATATACG+AGG 0.721276 4_3:-4096357 None:intergenic
AGAATGCAGCTAATATTTCG+GGG 0.723462 4_3:-4095286 None:intergenic
TATATACGAGGACTCCATGG+AGG 0.724414 4_3:-4096345 None:intergenic
CACAGACCTTATAGACAGGG+CGG 0.753720 4_3:-4090580 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGATTATTTAAACAATAA+TGG + chr4_3:4090416-4090435 Msa0625100:CDS 10.0%
!!! AAACCAATTTTTTTTTTTTT+TGG + chr4_3:4090799-4090818 Msa0625100:intron 10.0%
!! AAATGAAAAATCAATTTAAT+CGG - chr4_3:4091441-4091460 None:intergenic 10.0%
!!! CAAAAATATAATGTTTTTAA+GGG - chr4_3:4094538-4094557 None:intergenic 10.0%
!!! TCAAAAATATAATGTTTTTA+AGG - chr4_3:4094539-4094558 None:intergenic 10.0%
!! AATATATATTATGAGATTAA+GGG - chr4_3:4095150-4095169 None:intergenic 10.0%
!! AAATATATATTATGAGATTA+AGG - chr4_3:4095151-4095170 None:intergenic 10.0%
!! GAACCAAAAAAAAAAAAAAT+TGG - chr4_3:4090805-4090824 None:intergenic 15.0%
!! TTCTTATCTTATTAATTGAA+AGG + chr4_3:4091223-4091242 Msa0625100:intron 15.0%
!!! TTATTTTCTGAAATAATTAC+AGG - chr4_3:4091318-4091337 None:intergenic 15.0%
!! AAAAAAAATTCAAAAGTAGA+TGG - chr4_3:4093348-4093367 None:intergenic 15.0%
!! ATATGAATCATATTTATATG+TGG + chr4_3:4093402-4093421 Msa0625100:intron 15.0%
!! TGAAAAGAATATTAGAAATA+AGG - chr4_3:4094127-4094146 None:intergenic 15.0%
!!! TTAGCAATAATATTTCTATA+TGG - chr4_3:4094691-4094710 None:intergenic 15.0%
!! AAACAATAGTTTATACATTT+AGG + chr4_3:4094739-4094758 Msa0625100:intron 15.0%
!! AACAATAGTTTATACATTTA+GGG + chr4_3:4094740-4094759 Msa0625100:intron 15.0%
!! TGAAAAAATAAAAAGTTGTT+TGG + chr4_3:4094807-4094826 Msa0625100:intron 15.0%
!!! TGATTTTTAAAAACAGTTTT+AGG - chr4_3:4095022-4095041 None:intergenic 15.0%
!!! ATATATTTGATTTTTCTACT+TGG + chr4_3:4095163-4095182 Msa0625100:intron 15.0%
!! AAGTGTATATATTACAATTT+AGG - chr4_3:4095788-4095807 None:intergenic 15.0%
!!! CACAATGTTTGTTTATTTTT+GGG - chr4_3:4090029-4090048 None:intergenic 20.0%
!!! ACACAATGTTTGTTTATTTT+TGG - chr4_3:4090030-4090049 None:intergenic 20.0%
!! TTAAACAATAATGGTTTACA+AGG + chr4_3:4090425-4090444 Msa0625100:CDS 20.0%
!!! ATTGATTTTTCATTTCATCT+TGG + chr4_3:4091446-4091465 Msa0625100:intron 20.0%
!!! TATCCTTTTAAATTTCACTT+TGG + chr4_3:4091705-4091724 Msa0625100:intron 20.0%
!! TCAAACAATTTCTTCTAATA+TGG - chr4_3:4092891-4092910 None:intergenic 20.0%
!!! CGTTTTTTTATATGAATAAC+AGG + chr4_3:4092935-4092954 Msa0625100:intron 20.0%
!! AACTACAAATAGGTATTTAA+AGG - chr4_3:4093243-4093262 None:intergenic 20.0%
!! GAAATATTATTGCTAACTAT+AGG + chr4_3:4094695-4094714 Msa0625100:intron 20.0%
!!! TTTTAAAAAGTGAATCAAAC+AGG - chr4_3:4094766-4094785 None:intergenic 20.0%
!! AAGTTAAAGAAAATTACGTT+TGG - chr4_3:4095050-4095069 None:intergenic 20.0%
!! TAAACAAAAATAGGTAAACA+TGG - chr4_3:4096135-4096154 None:intergenic 20.0%
! TGAATTGAATTGAATGAAGA+TGG + chr4_3:4090354-4090373 Msa0625100:intron 25.0%
!!! TACAAGGTTTTGTTAATCTA+TGG + chr4_3:4090441-4090460 Msa0625100:CDS 25.0%
!! TTTTTGTCTTATACGATGTT+TGG - chr4_3:4090901-4090920 None:intergenic 25.0%
! TCTATGTGTTACGATTTAAT+TGG + chr4_3:4091021-4091040 Msa0625100:intron 25.0%
! AGAAAAGTAACAAAGAAGAT+AGG + chr4_3:4091246-4091265 Msa0625100:intron 25.0%
! AAAGAAAAGAAAATTGGCAT+AGG + chr4_3:4091546-4091565 Msa0625100:intron 25.0%
! ATAAGACTTTGTATGATCTT+AGG + chr4_3:4091603-4091622 Msa0625100:intron 25.0%
! CATCCAAAGTGAAATTTAAA+AGG - chr4_3:4091711-4091730 None:intergenic 25.0%
! TGTTCTGTGTTTATGAAAAT+TGG + chr4_3:4091729-4091748 Msa0625100:intron 25.0%
! CTTCATAGATAATGTATGAT+GGG + chr4_3:4091980-4091999 Msa0625100:intron 25.0%
! ATAAAGCCTTGAAATTCAAA+AGG - chr4_3:4092068-4092087 None:intergenic 25.0%
! CTTTATGAAGATAGGTTTAT+AGG + chr4_3:4092082-4092101 Msa0625100:intron 25.0%
!! AATTTTTGCATGTATGTTTC+AGG + chr4_3:4092238-4092257 Msa0625100:intron 25.0%
! AATGATCATAAACGATTGTT+GGG - chr4_3:4092278-4092297 None:intergenic 25.0%
! AAATGATCATAAACGATTGT+TGG - chr4_3:4092279-4092298 None:intergenic 25.0%
! AACAATCGTTTATGATCATT+TGG + chr4_3:4092278-4092297 Msa0625100:CDS 25.0%
! ACAATCGTTTATGATCATTT+GGG + chr4_3:4092279-4092298 Msa0625100:CDS 25.0%
! AAATTCAATGTAAATTGCAC+AGG - chr4_3:4092409-4092428 None:intergenic 25.0%
! ACTCAAGTGTTATATTTGAT+AGG + chr4_3:4092433-4092452 Msa0625100:intron 25.0%
! CTCAAGTGTTATATTTGATA+GGG + chr4_3:4092434-4092453 Msa0625100:intron 25.0%
! TTATATTTGATAGGGTCATT+TGG + chr4_3:4092442-4092461 Msa0625100:intron 25.0%
!!! ACATAATCATCGATTTTTAC+TGG + chr4_3:4092498-4092517 Msa0625100:CDS 25.0%
!!! CATAATCATCGATTTTTACT+GGG + chr4_3:4092499-4092518 Msa0625100:CDS 25.0%
! TTCTTACCATTTATTTGCAT+TGG + chr4_3:4092537-4092556 Msa0625100:intron 25.0%
! CAATTTCCAATGCAAATAAA+TGG - chr4_3:4092546-4092565 None:intergenic 25.0%
!! AGAAATGTTTCAACGTTTTA+TGG + chr4_3:4092847-4092866 Msa0625100:intron 25.0%
! CATATAAAAAAACGTCTCAA+GGG - chr4_3:4092929-4092948 None:intergenic 25.0%
! TCATATAAAAAAACGTCTCA+AGG - chr4_3:4092930-4092949 None:intergenic 25.0%
! GTTGAGATCTAATTTATGAT+AGG + chr4_3:4093378-4093397 Msa0625100:intron 25.0%
! ATCTTACTAGTATATGAATC+AGG + chr4_3:4093492-4093511 Msa0625100:intron 25.0%
! ACAATAGAGAATTAACCAAA+GGG - chr4_3:4093559-4093578 None:intergenic 25.0%
! AACAATAGAGAATTAACCAA+AGG - chr4_3:4093560-4093579 None:intergenic 25.0%
!! TCTTGATAGTATGAAGAAAA+TGG + chr4_3:4093590-4093609 Msa0625100:intron 25.0%
!! CTTGATAGTATGAAGAAAAT+GGG + chr4_3:4093591-4093610 Msa0625100:intron 25.0%
! TGTAAATACTACATTAATGC+TGG + chr4_3:4093634-4093653 Msa0625100:CDS 25.0%
! TAAATGAAATCCAGTTGTTA+TGG - chr4_3:4093853-4093872 None:intergenic 25.0%
! TGGATTTCATTTATCATGTT+TGG + chr4_3:4093860-4093879 Msa0625100:intron 25.0%
! TAGAAATAAGGAAAACTTTG+AGG - chr4_3:4094115-4094134 None:intergenic 25.0%
!! TTTCCCCTTTTTATGAAAAT+TGG + chr4_3:4094158-4094177 Msa0625100:intron 25.0%
!! AAGCCAATTTTCATAAAAAG+GGG - chr4_3:4094164-4094183 None:intergenic 25.0%
!! GAAGCCAATTTTCATAAAAA+GGG - chr4_3:4094165-4094184 None:intergenic 25.0%
!! AGAAGCCAATTTTCATAAAA+AGG - chr4_3:4094166-4094185 None:intergenic 25.0%
! TAAAGATGCATAGAATATAC+TGG + chr4_3:4094324-4094343 Msa0625100:intron 25.0%
! TATATAATGCAAGTCAGATT+GGG + chr4_3:4094384-4094403 Msa0625100:intron 25.0%
! ACTAAGTTGTTGTAATGATT+GGG + chr4_3:4094582-4094601 Msa0625100:intron 25.0%
!! GCAATAATATTTCTATATGG+AGG - chr4_3:4094688-4094707 None:intergenic 25.0%
!!! GTAGTTTTGCTTTTCAATTT+TGG + chr4_3:4094911-4094930 Msa0625100:intron 25.0%
!!! TGGTTTTGAAAACAAGAAAA+AGG + chr4_3:4094931-4094950 Msa0625100:intron 25.0%
!!! TTTTGAAAACAAGAAAAAGG+CGG + chr4_3:4094934-4094953 Msa0625100:intron 25.0%
! CAATTGCCATTAATGAAAAA+TGG - chr4_3:4094968-4094987 None:intergenic 25.0%
!! ATGTTCTCTAAGAAAATGTT+AGG - chr4_3:4095189-4095208 None:intergenic 25.0%
! GATAGAAAATAATGCTTACT+TGG - chr4_3:4095500-4095519 None:intergenic 25.0%
! TTAAAGCTTCAACAAAATCA+TGG - chr4_3:4095684-4095703 None:intergenic 25.0%
! TATATTACAATTTAGGCTGT+TGG - chr4_3:4095781-4095800 None:intergenic 25.0%
! TCATATCTATAGAAAACCAA+CGG + chr4_3:4095814-4095833 Msa0625100:intron 25.0%
! GAATTGTATATTTCAGAAAC+AGG - chr4_3:4095863-4095882 None:intergenic 25.0%
! TAACATTCGCTTACAAAATA+AGG - chr4_3:4096224-4096243 None:intergenic 25.0%
! GCGAATGTTATGATTTAAAA+TGG + chr4_3:4096234-4096253 Msa0625100:three_prime_UTR 25.0%
! AATTCTGTCAAGAAAAATGA+GGG - chr4_3:4096323-4096342 None:intergenic 25.0%
GTTAGTAAGAAGATCGAAAA+TGG + chr4_3:4090145-4090164 Msa0625100:exon 30.0%
CAGCATAAACAGCTATAATT+TGG - chr4_3:4090490-4090509 None:intergenic 30.0%
TGAAAATAAAAGTTGTGCTG+TGG - chr4_3:4090837-4090856 None:intergenic 30.0%
! CACACAAAGACAAACTTTTA+TGG - chr4_3:4090936-4090955 None:intergenic 30.0%
AGTGTGTTTGATCTACTAAA+AGG - chr4_3:4091002-4091021 None:intergenic 30.0%
ATGTGTTACGATTTAATTGG+AGG + chr4_3:4091024-4091043 Msa0625100:intron 30.0%
TTTGTATTTCTTCAGGCAAA+TGG + chr4_3:4091147-4091166 Msa0625100:intron 30.0%
TGCTGCATATTTAGTTACTT+TGG + chr4_3:4091173-4091192 Msa0625100:CDS 30.0%
! TTGAATGTATTGACATCTGT+CGG + chr4_3:4091343-4091362 Msa0625100:intron 30.0%
ATTCAATAAGTTTCAGTGCT+AGG + chr4_3:4091396-4091415 Msa0625100:intron 30.0%
TTCAATAAGTTTCAGTGCTA+GGG + chr4_3:4091397-4091416 Msa0625100:intron 30.0%
TCTTTGTGGGAAGAATATAA+TGG - chr4_3:4091531-4091550 None:intergenic 30.0%
TCCCACAAAGAAAAGAAAAT+TGG + chr4_3:4091540-4091559 Msa0625100:intron 30.0%
! GCCAATTTTCTTTTCTTTGT+GGG - chr4_3:4091544-4091563 None:intergenic 30.0%
! TGCCAATTTTCTTTTCTTTG+TGG - chr4_3:4091545-4091564 None:intergenic 30.0%
ACATAATATTGATGTCTTCC+AGG + chr4_3:4091579-4091598 Msa0625100:intron 30.0%
!! ATCATACAAAGTCTTATTCC+TGG - chr4_3:4091600-4091619 None:intergenic 30.0%
! TGATCTTAGGTTGTCATATA+TGG + chr4_3:4091616-4091635 Msa0625100:intron 30.0%
GTGTTTATGAAAATTGGCAT+AGG + chr4_3:4091735-4091754 Msa0625100:intron 30.0%
GCTTCATAGATAATGTATGA+TGG + chr4_3:4091979-4091998 Msa0625100:intron 30.0%
! GGTTATCCTTTTGAATTTCA+AGG + chr4_3:4092059-4092078 Msa0625100:intron 30.0%
! TTTCAAGGCTTTATGAAGAT+AGG + chr4_3:4092074-4092093 Msa0625100:intron 30.0%
! ATTTTCCTTACAAAGCAAGA+TGG + chr4_3:4092178-4092197 Msa0625100:intron 30.0%
CAATCGTTTATGATCATTTG+GGG + chr4_3:4092280-4092299 Msa0625100:CDS 30.0%
AATCGTTTATGATCATTTGG+GGG + chr4_3:4092281-4092300 Msa0625100:CDS 30.0%
ATATATTCCACACTCAACTT+TGG + chr4_3:4092306-4092325 Msa0625100:CDS 30.0%
TATATTCCACACTCAACTTT+GGG + chr4_3:4092307-4092326 Msa0625100:CDS 30.0%
AAAATCTCTCGTCTGATTAT+TGG + chr4_3:4092635-4092654 Msa0625100:intron 30.0%
! GAGAATTTTCCATGCATTAT+CGG - chr4_3:4092741-4092760 None:intergenic 30.0%
!! ACCAATCCTTTTGTTTAAAC+TGG + chr4_3:4092769-4092788 Msa0625100:intron 30.0%
ACCAGTTTAAACAAAAGGAT+TGG - chr4_3:4092773-4092792 None:intergenic 30.0%
GTCAAACCAGTTTAAACAAA+AGG - chr4_3:4092778-4092797 None:intergenic 30.0%
GAATTTCAAAGTTCACATAG+TGG - chr4_3:4092820-4092839 None:intergenic 30.0%
AAGAATGACAGAAAGTTAGA+AGG - chr4_3:4093006-4093025 None:intergenic 30.0%
! TCAAAATATTTTCCAATGCG+TGG - chr4_3:4093048-4093067 None:intergenic 30.0%
AGTATCAGCAAACTACAAAT+AGG - chr4_3:4093253-4093272 None:intergenic 30.0%
! TTTAACTTCCTTAGTTGCTT+TGG + chr4_3:4093425-4093444 Msa0625100:intron 30.0%
TACTAGTAAGATCATGTTCA+TGG - chr4_3:4093484-4093503 None:intergenic 30.0%
! TGTATGTTACCAAGTTTTTC+TGG + chr4_3:4093657-4093676 Msa0625100:CDS 30.0%
! AGCTGGATTTTATATTTGCT+GGG + chr4_3:4093960-4093979 Msa0625100:intron 30.0%
CTGGATTACTATTTGTCATT+TGG + chr4_3:4094343-4094362 Msa0625100:intron 30.0%
CTATATAATGCAAGTCAGAT+TGG + chr4_3:4094383-4094402 Msa0625100:intron 30.0%
CACTAAGTTGTTGTAATGAT+TGG + chr4_3:4094581-4094600 Msa0625100:intron 30.0%
!! CACATTTTAAGTCAAATGTC+AGG - chr4_3:4094641-4094660 None:intergenic 30.0%
!!! ATGGTGCCATTTTTCATTAA+TGG + chr4_3:4094959-4094978 Msa0625100:intron 30.0%
AAGAATGCAGCTAATATTTC+GGG - chr4_3:4095290-4095309 None:intergenic 30.0%
GAAGAATGCAGCTAATATTT+CGG - chr4_3:4095291-4095310 None:intergenic 30.0%
AAATATTAGCTGCATTCTTC+TGG + chr4_3:4095291-4095310 Msa0625100:CDS 30.0%
AGAAATATCACGTAGAAGTA+AGG - chr4_3:4095427-4095446 None:intergenic 30.0%
! TTTTTGCTCGATCAAAAAGA+AGG - chr4_3:4095456-4095475 None:intergenic 30.0%
! TTCTTTTTGATCGAGCAAAA+AGG + chr4_3:4095455-4095474 Msa0625100:CDS 30.0%
! TCTTTTTGATCGAGCAAAAA+GGG + chr4_3:4095456-4095475 Msa0625100:CDS 30.0%
!! TTAGTGTTGCTTATAGTTCT+TGG + chr4_3:4095522-4095541 Msa0625100:intron 30.0%
! AAAGTTTGCTTTATGAGTCA+TGG + chr4_3:4095611-4095630 Msa0625100:intron 30.0%
! ACTTTTTGCTAAAATCACAG+TGG + chr4_3:4095709-4095728 Msa0625100:intron 30.0%
GATGATAAGTTTGACAGAAT+CGG - chr4_3:4095739-4095758 None:intergenic 30.0%
AATTCTTTATTGCATTGCAG+TGG - chr4_3:4095892-4095911 None:intergenic 30.0%
CATGAAATTTCATATTCCAC+TGG - chr4_3:4095958-4095977 None:intergenic 30.0%
CAGTGGAATATGAAATTTCA+TGG + chr4_3:4095956-4095975 Msa0625100:intron 30.0%
AGTCATCATCAATATATTCC+TGG - chr4_3:4096084-4096103 None:intergenic 30.0%
!! TATATTGATGATGACTTGTC+TGG + chr4_3:4096088-4096107 Msa0625100:exon 30.0%
CAGAAGCAGTAAACAAAAAT+AGG - chr4_3:4096144-4096163 None:intergenic 30.0%
TGAGGGAGATTTCTATTTAT+GGG - chr4_3:4096306-4096325 None:intergenic 30.0%
ATGAGGGAGATTTCTATTTA+TGG - chr4_3:4096307-4096326 None:intergenic 30.0%
GAATTCTGTCAAGAAAAATG+AGG - chr4_3:4096324-4096343 None:intergenic 30.0%
AGTAAGAAGATCGAAAATGG+TGG + chr4_3:4090148-4090167 Msa0625100:exon 35.0%
ACTTACAGTAGATTGACGAA+AGG - chr4_3:4090254-4090273 None:intergenic 35.0%
ATGAAGATGGTTTACGATGA+CGG + chr4_3:4090367-4090386 Msa0625100:intron 35.0%
!! AAAGCTAGAAGTGTTGGTTT+AGG - chr4_3:4090467-4090486 None:intergenic 35.0%
! ATTTGGAAAGCTAGAAGTGT+TGG - chr4_3:4090473-4090492 None:intergenic 35.0%
GTCGTTGTTTGTATTTCTTC+AGG + chr4_3:4091140-4091159 Msa0625100:intron 35.0%
TGGTTACTTACATTGCACTT+TGG + chr4_3:4091193-4091212 Msa0625100:CDS 35.0%
TTACTTACATTGCACTTTGG+CGG + chr4_3:4091196-4091215 Msa0625100:CDS 35.0%
AGAAGACTAGCAATGACTAA+TGG - chr4_3:4091677-4091696 None:intergenic 35.0%
!! TCATTGCTAGTCTTCTCAAT+TGG + chr4_3:4091681-4091700 Msa0625100:intron 35.0%
! TGATCAAAATTTTCCCAGTG+TGG + chr4_3:4091909-4091928 Msa0625100:intron 35.0%
! CATAGATAATGTATGATGGG+TGG + chr4_3:4091983-4092002 Msa0625100:intron 35.0%
!! GTATGATGGGTGGATATATT+TGG + chr4_3:4091993-4092012 Msa0625100:intron 35.0%
! TCATTGCTAGTCTACTCAAT+TGG + chr4_3:4092038-4092057 Msa0625100:intron 35.0%
!! TTGCATGTATGTTTCAGGTT+TGG + chr4_3:4092243-4092262 Msa0625100:intron 35.0%
!! TGCATGTATGTTTCAGGTTT+GGG + chr4_3:4092244-4092263 Msa0625100:intron 35.0%
AAGAAAGAGAATGTGAACGA+TGG + chr4_3:4092579-4092598 Msa0625100:intron 35.0%
TTGCATCAATGATCCTCTAA+AGG - chr4_3:4092668-4092687 None:intergenic 35.0%
!! GAGGCGGTAATTTTAAAGAA+AGG - chr4_3:4092695-4092714 None:intergenic 35.0%
! TTCTTGGTTTAGAATGAGAG+AGG - chr4_3:4092714-4092733 None:intergenic 35.0%
TCTCTCATTCTAAACCAAGA+AGG + chr4_3:4092713-4092732 Msa0625100:intron 35.0%
TCACATAGTGGCATTATGAA+CGG - chr4_3:4092808-4092827 None:intergenic 35.0%
GAATTAAACTCCACATGTCT+AGG - chr4_3:4092961-4092980 None:intergenic 35.0%
! CCACCTTTTTCCATAAATGA+CGG + chr4_3:4092980-4092999 Msa0625100:intron 35.0%
TAACTTTCTGTCATTCTTGC+AGG + chr4_3:4093008-4093027 Msa0625100:intron 35.0%
AACTTTCTGTCATTCTTGCA+GGG + chr4_3:4093009-4093028 Msa0625100:intron 35.0%
! GTTTTCACAAACTGCAGATT+TGG + chr4_3:4093075-4093094 Msa0625100:CDS 35.0%
! CAGATTTGGAATGATGTCAT+GGG + chr4_3:4093089-4093108 Msa0625100:CDS 35.0%
! TTTTCCAACTAAATGCTGGA+TGG - chr4_3:4093206-4093225 None:intergenic 35.0%
! TGTGTTTTCCAACTAAATGC+TGG - chr4_3:4093210-4093229 None:intergenic 35.0%
!! AGGTTCAAACTGTTTCTACA+AGG - chr4_3:4093277-4093296 None:intergenic 35.0%
TTGTAGAAACAGTTTGAACC+TGG + chr4_3:4093276-4093295 Msa0625100:intron 35.0%
TGTAGAAACAGTTTGAACCT+GGG + chr4_3:4093277-4093296 Msa0625100:intron 35.0%
TAGTAAGATCATGTTCATGG+AGG - chr4_3:4093481-4093500 None:intergenic 35.0%
TTTGTGAAATTTCCACCCTT+TGG + chr4_3:4093541-4093560 Msa0625100:intron 35.0%
ATAGAGAATTAACCAAAGGG+TGG - chr4_3:4093556-4093575 None:intergenic 35.0%
! ATGTTACCAAGTTTTTCTGG+TGG + chr4_3:4093660-4093679 Msa0625100:CDS 35.0%
!! TGTTACCAAGTTTTTCTGGT+GGG + chr4_3:4093661-4093680 Msa0625100:CDS 35.0%
! GTTCTGCTGATATGTTCTTT+TGG + chr4_3:4093778-4093797 Msa0625100:intron 35.0%
TGAAATCCAGTTGTTATGGA+AGG - chr4_3:4093849-4093868 None:intergenic 35.0%
AAATCCAGCTGCAAGATTTA+GGG - chr4_3:4093950-4093969 None:intergenic 35.0%
AAAATCCAGCTGCAAGATTT+AGG - chr4_3:4093951-4093970 None:intergenic 35.0%
! CAGCTGGATTTTATATTTGC+TGG + chr4_3:4093959-4093978 Msa0625100:intron 35.0%
!! GCTGGATTTTATATTTGCTG+GGG + chr4_3:4093961-4093980 Msa0625100:intron 35.0%
!!! GCTAGCACTCTTTATTTTAG+TGG + chr4_3:4094196-4094215 Msa0625100:intron 35.0%
ACATCAACTATGATTGTGAC+AGG + chr4_3:4094237-4094256 Msa0625100:CDS 35.0%
TAGGACAAATGGAAAAAGCT+TGG + chr4_3:4094277-4094296 Msa0625100:CDS 35.0%
AAATGGAAAAAGCTTGGTCT+GGG + chr4_3:4094283-4094302 Msa0625100:CDS 35.0%
CTATGCATCTTTACCTTTGA+TGG - chr4_3:4094317-4094336 None:intergenic 35.0%
!!! AGCTTAAGCTCGCTATTTTT+TGG + chr4_3:4094607-4094626 Msa0625100:intron 35.0%
!!! GCTTAAGCTCGCTATTTTTT+GGG + chr4_3:4094608-4094627 Msa0625100:intron 35.0%
!!! CTTAAGCTCGCTATTTTTTG+GGG + chr4_3:4094609-4094628 Msa0625100:intron 35.0%
AGAATGCAGCTAATATTTCG+GGG - chr4_3:4095289-4095308 None:intergenic 35.0%
TTACGTGATTGAATAGAGCT+GGG - chr4_3:4095322-4095341 None:intergenic 35.0%
! ACTGAACTTTTCATTACCAG+TGG + chr4_3:4095939-4095958 Msa0625100:intron 35.0%
TGAAAATTTCCACTTCATGC+AGG + chr4_3:4096007-4096026 Msa0625100:intron 35.0%
ATTCCTGGAATGATTCTGTA+AGG - chr4_3:4096069-4096088 None:intergenic 35.0%
GTTTACCATTGCATCTTAAG+TGG - chr4_3:4096167-4096186 None:intergenic 35.0%
ATTCCTAGCTCATATATACG+AGG - chr4_3:4096360-4096379 None:intergenic 35.0%
TTGTGTGTGTGTGTCTATCA+CGG + chr4_3:4090044-4090063 Msa0625100:five_prime_UTR 40.0%
GAGTGGTGAATGAACTGTTT+CGG - chr4_3:4090189-4090208 None:intergenic 40.0%
! ATAGAAGCATATGTGACGAG+TGG - chr4_3:4090206-4090225 None:intergenic 40.0%
TACAGTAGATTGACGAAAGG+AGG - chr4_3:4090251-4090270 None:intergenic 40.0%
CTTCCTGGTCAAACTGTTTA+CGG + chr4_3:4090536-4090555 Msa0625100:CDS 40.0%
ACACACAGACCTTATAGACA+GGG - chr4_3:4090586-4090605 None:intergenic 40.0%
AATTGGCATAGGAGATCTCA+CGG + chr4_3:4091746-4091765 Msa0625100:intron 40.0%
! TTGAAGTGTCAGTGCTACAT+AGG - chr4_3:4091822-4091841 None:intergenic 40.0%
! GCACTGACACTTCAAATTGA+AGG + chr4_3:4091827-4091846 Msa0625100:intron 40.0%
!! ATGAAGCATTGACACAGACA+CGG - chr4_3:4091966-4091985 None:intergenic 40.0%
GCAAACCATCTTGCTTTGTA+AGG - chr4_3:4092186-4092205 None:intergenic 40.0%
GAACCAGAATCAGTAGAAGA+TGG - chr4_3:4092470-4092489 None:intergenic 40.0%
!! TCTACTGATTCTGGTTCAAG+TGG + chr4_3:4092473-4092492 Msa0625100:CDS 40.0%
!! CTACTGATTCTGGTTCAAGT+GGG + chr4_3:4092474-4092493 Msa0625100:CDS 40.0%
! TTGGTTTAGAATGAGAGAGG+CGG - chr4_3:4092711-4092730 None:intergenic 40.0%
CCGTCATTTATGGAAAAAGG+TGG - chr4_3:4092983-4093002 None:intergenic 40.0%
AGGCCGTCATTTATGGAAAA+AGG - chr4_3:4092986-4093005 None:intergenic 40.0%
AGTTAGAAGGCCGTCATTTA+TGG - chr4_3:4092993-4093012 None:intergenic 40.0%
! GCAGATTTGGAATGATGTCA+TGG + chr4_3:4093088-4093107 Msa0625100:CDS 40.0%
ACTTACCTACTGCATAAAGC+AGG + chr4_3:4093122-4093141 Msa0625100:CDS 40.0%
GTAGAAACAGTTTGAACCTG+GGG + chr4_3:4093278-4093297 Msa0625100:intron 40.0%
CACTGTATCCAAAGCAACTA+AGG - chr4_3:4093436-4093455 None:intergenic 40.0%
! CTTAGTTGCTTTGGATACAG+TGG + chr4_3:4093434-4093453 Msa0625100:intron 40.0%
GAACATATCAGCAGAACGAT+AGG - chr4_3:4093775-4093794 None:intergenic 40.0%
ACCATACCTTCCATAACAAC+TGG + chr4_3:4093840-4093859 Msa0625100:intron 40.0%
TCCAGTTGTTATGGAAGGTA+TGG - chr4_3:4093844-4093863 None:intergenic 40.0%
GATTTAGGGACACGATAAAG+AGG - chr4_3:4093936-4093955 None:intergenic 40.0%
! TTATATTTGCTGGGGCTGTT+TGG + chr4_3:4093969-4093988 Msa0625100:CDS 40.0%
ACAACAGCTCAAACAGGAAT+GGG - chr4_3:4094073-4094092 None:intergenic 40.0%
AACAACAGCTCAAACAGGAA+TGG - chr4_3:4094074-4094093 None:intergenic 40.0%
CACAAAACAACAGCTCAAAC+AGG - chr4_3:4094079-4094098 None:intergenic 40.0%
!!! CTGTTTGAGCTGTTGTTTTG+TGG + chr4_3:4094077-4094096 Msa0625100:intron 40.0%
!!! GCACTCTTTATTTTAGTGGC+TGG + chr4_3:4094200-4094219 Msa0625100:CDS 40.0%
ACTATGATTGTGACAGGCAA+AGG + chr4_3:4094243-4094262 Msa0625100:CDS 40.0%
CAAGAGTTTCGTAGGACAAA+TGG + chr4_3:4094266-4094285 Msa0625100:CDS 40.0%
CAAATGGAAAAAGCTTGGTC+TGG + chr4_3:4094282-4094301 Msa0625100:CDS 40.0%
AATGGAAAAAGCTTGGTCTG+GGG + chr4_3:4094284-4094303 Msa0625100:CDS 40.0%
!! AAGGCTTCTTTTTGTTTCCC+CGG - chr4_3:4094490-4094509 None:intergenic 40.0%
! AGAAGCCTTCTTTTAACCTC+TGG + chr4_3:4094501-4094520 Msa0625100:CDS 40.0%
ACCATCCAGAGGTTAAAAGA+AGG - chr4_3:4094509-4094528 None:intergenic 40.0%
AAACAAGAAAAAGGCGGACA+TGG + chr4_3:4094940-4094959 Msa0625100:intron 40.0%
GGTAGCACAGAAAAGTGAAT+TGG - chr4_3:4095231-4095250 None:intergenic 40.0%
CTTACGTGATTGAATAGAGC+TGG - chr4_3:4095323-4095342 None:intergenic 40.0%
!! GATGACAAAAAGAGCATCTG+TGG - chr4_3:4095576-4095595 None:intergenic 40.0%
GTTTGCTTTATGAGTCATGG+CGG + chr4_3:4095614-4095633 Msa0625100:intron 40.0%
CCAAATCTGGTTGAAACAGT+AGG - chr4_3:4095840-4095859 None:intergenic 40.0%
CCTACTGTTTCAACCAGATT+TGG + chr4_3:4095837-4095856 Msa0625100:intron 40.0%
TTTCAGAAACAGGCCAAATC+TGG - chr4_3:4095853-4095872 None:intergenic 40.0%
ATTTCCACTTCATGCAGGTA+TGG + chr4_3:4096012-4096031 Msa0625100:intron 40.0%
GTACCTTACAGAATCATTCC+AGG + chr4_3:4096063-4096082 Msa0625100:CDS 40.0%
! TTCTGCCACTTAAGATGCAA+TGG + chr4_3:4096159-4096178 Msa0625100:three_prime_UTR 40.0%
TCATATATACGAGGACTCCA+TGG - chr4_3:4096351-4096370 None:intergenic 40.0%
AGTCCTCGTATATATGAGCT+AGG + chr4_3:4096354-4096373 Msa0625100:three_prime_UTR 40.0%
! ATGGTTTACGATGACGGCTA+TGG + chr4_3:4090373-4090392 Msa0625100:CDS 45.0%
! TTTACGATGACGGCTATGGA+TGG + chr4_3:4090377-4090396 Msa0625100:CDS 45.0%
TCACTTCAGCTTCTTCTTCC+TGG + chr4_3:4090521-4090540 Msa0625100:CDS 45.0%
! TACGGTCCTATTTCTCCTAC+CGG + chr4_3:4090554-4090573 Msa0625100:CDS 45.0%
GACACACAGACCTTATAGAC+AGG - chr4_3:4090587-4090606 None:intergenic 45.0%
CAGGGAGGGACAAAAATTTC+AGG - chr4_3:4090749-4090768 None:intergenic 45.0%
AGTTGTGCTGTGGTTTAGTG+AGG - chr4_3:4090827-4090846 None:intergenic 45.0%
AAGTGTCAGTGCTACATAGG+AGG - chr4_3:4091819-4091838 None:intergenic 45.0%
! CAGTGTCTATGTGTTGGTGT+CGG + chr4_3:4091932-4091951 Msa0625100:intron 45.0%
AAAGCTCCCAAAGTTGAGTG+TGG - chr4_3:4092316-4092335 None:intergenic 45.0%
!! GCACCATCTTCTACTGATTC+TGG + chr4_3:4092464-4092483 Msa0625100:CDS 45.0%
TATTGGCGTTGTGCCTTTAG+AGG + chr4_3:4092652-4092671 Msa0625100:intron 45.0%
! ATGCATTATCGGTGCCTTCT+TGG - chr4_3:4092730-4092749 None:intergenic 45.0%
!! AAGAAGGCACCGATAATGCA+TGG + chr4_3:4092729-4092748 Msa0625100:intron 45.0%
GAATAACAGGCCTAGACATG+TGG + chr4_3:4092948-4092967 Msa0625100:intron 45.0%
TCTGTCATTCTTGCAGGGTA+TGG + chr4_3:4093014-4093033 Msa0625100:intron 45.0%
! AATGATGTCATGGGCTGTTC+TGG + chr4_3:4093098-4093117 Msa0625100:CDS 45.0%
CTCAACCTGCTTTATGCAGT+AGG - chr4_3:4093130-4093149 None:intergenic 45.0%
! TAAAGCAGGTTGAGTCTACG+AGG + chr4_3:4093136-4093155 Msa0625100:intron 45.0%
TGCTGGATGGCACAATCATT+AGG - chr4_3:4093193-4093212 None:intergenic 45.0%
TGTGCCATCCAGCATTTAGT+TGG + chr4_3:4093199-4093218 Msa0625100:intron 45.0%
CAGCTTCTATGGAGCTTGAT+TGG - chr4_3:4093322-4093341 None:intergenic 45.0%
ATCAAGCTCCATAGAAGCTG+AGG + chr4_3:4093322-4093341 Msa0625100:intron 45.0%
GGCAATAAGTCAGTACCAAC+TGG - chr4_3:4093460-4093479 None:intergenic 45.0%
AGCTTCCCACCAGAAAAACT+TGG - chr4_3:4093669-4093688 None:intergenic 45.0%
!! AAGTTTTTCTGGTGGGAAGC+TGG + chr4_3:4093668-4093687 Msa0625100:CDS 45.0%
ATGGATATTGCACACGATCG+AGG + chr4_3:4093704-4093723 Msa0625100:CDS 45.0%
TGGTTGACAAGGTACATTCC+AGG - chr4_3:4094021-4094040 None:intergenic 45.0%
GATTCACTGGATGGTTGACA+AGG - chr4_3:4094032-4094051 None:intergenic 45.0%
GTCAACCATCCAGTGAATCT+TGG + chr4_3:4094033-4094052 Msa0625100:CDS 45.0%
! GCCTTCTTTTAACCTCTGGA+TGG + chr4_3:4094505-4094524 Msa0625100:CDS 45.0%
!!! AAGCTCGCTATTTTTTGGGG+TGG + chr4_3:4094612-4094631 Msa0625100:intron 45.0%
AAGTAAGGCAAGAACTGCAC+GGG - chr4_3:4095412-4095431 None:intergenic 45.0%
GAAGTAAGGCAAGAACTGCA+CGG - chr4_3:4095413-4095432 None:intergenic 45.0%
CTTTCCATACCTGCATGAAG+TGG - chr4_3:4096019-4096038 None:intergenic 45.0%
! CATGCAGGTATGGAAAGTAC+TGG + chr4_3:4096022-4096041 Msa0625100:intron 45.0%
ACTGGAAACTCTATTGCGAC+AGG + chr4_3:4096040-4096059 Msa0625100:CDS 45.0%
CTGGAAACTCTATTGCGACA+GGG + chr4_3:4096041-4096060 Msa0625100:CDS 45.0%
GTAAACATGGCAGCAAGTGA+AGG - chr4_3:4096122-4096141 None:intergenic 45.0%
CTTGACAGAATTCTCCTCCA+TGG + chr4_3:4096331-4096350 Msa0625100:three_prime_UTR 45.0%
TATATACGAGGACTCCATGG+AGG - chr4_3:4096348-4096367 None:intergenic 45.0%
AGTCGAAGACGCTAAGTCGT+AGG + chr4_3:4090121-4090140 Msa0625100:five_prime_UTR 50.0%
GGACCGTAAACAGTTTGACC+AGG - chr4_3:4090542-4090561 None:intergenic 50.0%
CGGTTACCGGTAGGAGAAAT+AGG - chr4_3:4090563-4090582 None:intergenic 50.0%
CTTATAGACAGGGCGGTTAC+CGG - chr4_3:4090576-4090595 None:intergenic 50.0%
CACAGACCTTATAGACAGGG+CGG - chr4_3:4090583-4090602 None:intergenic 50.0%
TTTGTCTTGTCTTGCCCCAC+AGG - chr4_3:4090780-4090799 None:intergenic 50.0%
CACATAGACACTGCCACACT+GGG - chr4_3:4091925-4091944 None:intergenic 50.0%
ACACATAGACACTGCCACAC+TGG - chr4_3:4091926-4091945 None:intergenic 50.0%
GTGTGGCAGTGTCTATGTGT+TGG + chr4_3:4091926-4091945 Msa0625100:intron 50.0%
ATGGAGCTCTATCCACGCAT+TGG + chr4_3:4093033-4093052 Msa0625100:CDS 50.0%
! GATTGGTCACCTAACCACCA+AGG - chr4_3:4093305-4093324 None:intergenic 50.0%
GTAGATGGCCTCAGCTTCTA+TGG - chr4_3:4093333-4093352 None:intergenic 50.0%
CTTTGGATACAGTGGCCAGT+TGG + chr4_3:4093442-4093461 Msa0625100:intron 50.0%
AGCTGGATACTGGAACACGA+TGG + chr4_3:4093685-4093704 Msa0625100:CDS 50.0%
GTGTCCCTAAATCTTGCAGC+TGG + chr4_3:4093943-4093962 Msa0625100:intron 50.0%
TTTGCTGGGGCTGTTTGGTT+TGG + chr4_3:4093974-4093993 Msa0625100:CDS 50.0%
! TTGCTGGGGCTGTTTGGTTT+GGG + chr4_3:4093975-4093994 Msa0625100:CDS 50.0%
ACAGGAATGGGATGGTACCT+GGG - chr4_3:4094061-4094080 None:intergenic 50.0%
AACAGGAATGGGATGGTACC+TGG - chr4_3:4094062-4094081 None:intergenic 50.0%
CAGCTCAAACAGGAATGGGA+TGG - chr4_3:4094069-4094088 None:intergenic 50.0%
GGCAAAGGCAAGAGTTTCGT+AGG + chr4_3:4094258-4094277 Msa0625100:CDS 50.0%
CTGGGGAAAAGCTCCATCAA+AGG + chr4_3:4094301-4094320 Msa0625100:CDS 50.0%
GCCTCATATACCACTGCTTC+CGG + chr4_3:4094468-4094487 Msa0625100:CDS 50.0%
CCTCATATACCACTGCTTCC+GGG + chr4_3:4094469-4094488 Msa0625100:CDS 50.0%
CTCATATACCACTGCTTCCG+GGG + chr4_3:4094470-4094489 Msa0625100:CDS 50.0%
!! TTTTGTTTCCCCGGAAGCAG+TGG - chr4_3:4094481-4094500 None:intergenic 50.0%
AAGGGATACGTACCATCCAG+AGG - chr4_3:4094520-4094539 None:intergenic 50.0%
! CACTTTTCTGTGCTACCTGC+AGG + chr4_3:4095234-4095253 Msa0625100:intron 50.0%
! TTTTCTGTGCTACCTGCAGG+TGG + chr4_3:4095237-4095256 Msa0625100:intron 50.0%
TTTCTGTGCTACCTGCAGGT+GGG + chr4_3:4095238-4095257 Msa0625100:intron 50.0%
ATGGCGGTGCATGTTTGGAT+CGG + chr4_3:4095630-4095649 Msa0625100:intron 50.0%
TGGTTGAAACAGTAGGCCGT+TGG - chr4_3:4095833-4095852 None:intergenic 50.0%
CATGGCAGCAAGTGAAGGAT+AGG - chr4_3:4096117-4096136 None:intergenic 50.0%
CGGTAACCGCCCTGTCTATA+AGG + chr4_3:4090574-4090593 Msa0625100:CDS 55.0%
ACATCTGTCGGTGACACGTG+TGG + chr4_3:4091355-4091374 Msa0625100:intron 55.0%
CATCTGTCGGTGACACGTGT+GGG + chr4_3:4091356-4091375 Msa0625100:intron 55.0%
CAGTTTGAACCTGGGGACCT+TGG + chr4_3:4093285-4093304 Msa0625100:intron 55.0%
TTTGAACCTGGGGACCTTGG+TGG + chr4_3:4093288-4093307 Msa0625100:intron 55.0%
TCTGGTGGGAAGCTGGATAC+TGG + chr4_3:4093675-4093694 Msa0625100:CDS 55.0%
GGGTGCCAAGATTCACTGGA+TGG - chr4_3:4094041-4094060 None:intergenic 55.0%
TCCAGTGAATCTTGGCACCC+AGG + chr4_3:4094041-4094060 Msa0625100:CDS 55.0%
ACCTGGGTGCCAAGATTCAC+TGG - chr4_3:4094045-4094064 None:intergenic 55.0%
CCCGGAAGCAGTGGTATATG+AGG - chr4_3:4094472-4094491 None:intergenic 55.0%
TTCTGTGCTACCTGCAGGTG+GGG + chr4_3:4095239-4095258 Msa0625100:intron 55.0%
GAGTCATGGCGGTGCATGTT+TGG + chr4_3:4095625-4095644 Msa0625100:intron 55.0%
TAGACAGGGCGGTTACCGGT+AGG - chr4_3:4090572-4090591 None:intergenic 60.0%
CACAGGCACAAGCACAGGGA+GGG - chr4_3:4090763-4090782 None:intergenic 60.0%
CTCCCTGTGCTTGTGCCTGT+GGG + chr4_3:4090762-4090781 Msa0625100:intron 60.0%
TCCCTGTGCTTGTGCCTGTG+GGG + chr4_3:4090763-4090782 Msa0625100:intron 60.0%
! ACCTGGGGACCTTGGTGGTT+AGG + chr4_3:4093293-4093312 Msa0625100:intron 60.0%
ACCTAACCACCAAGGTCCCC+AGG - chr4_3:4093297-4093316 None:intergenic 60.0%
ACGAGCTAATCCCCACCTGC+AGG - chr4_3:4095252-4095271 None:intergenic 60.0%
CCACAGGCACAAGCACAGGG+AGG - chr4_3:4090764-4090783 None:intergenic 65.0%
CCTCCCTGTGCTTGTGCCTG+TGG + chr4_3:4090761-4090780 Msa0625100:intron 65.0%
GCCCCACAGGCACAAGCACA+GGG - chr4_3:4090767-4090786 None:intergenic 65.0%
TGCCCCACAGGCACAAGCAC+AGG - chr4_3:4090768-4090787 None:intergenic 65.0%
CGGTGACACGTGTGGGACAC+TGG + chr4_3:4091363-4091382 Msa0625100:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 4090012 4096383 4090012 ID=Msa0625100;Name=Msa0625100
chr4_3 mRNA 4090012 4096383 4090012 ID=Msa0625100-mRNA-1;Parent=Msa0625100;Name=Msa0625100-mRNA-1;_AED=0.15;_eAED=0.15;_QI=152|1|1|1|1|1|13|288|438
chr4_3 exon 4090012 4090267 4090012 ID=Msa0625100-mRNA-1:exon:993;Parent=Msa0625100-mRNA-1
chr4_3 exon 4090373 4090595 4090373 ID=Msa0625100-mRNA-1:exon:994;Parent=Msa0625100-mRNA-1
chr4_3 exon 4091162 4091217 4091162 ID=Msa0625100-mRNA-1:exon:995;Parent=Msa0625100-mRNA-1
chr4_3 exon 4092260 4092362 4092260 ID=Msa0625100-mRNA-1:exon:996;Parent=Msa0625100-mRNA-1
chr4_3 exon 4092455 4092520 4092455 ID=Msa0625100-mRNA-1:exon:997;Parent=Msa0625100-mRNA-1
chr4_3 exon 4093030 4093143 4093030 ID=Msa0625100-mRNA-1:exon:998;Parent=Msa0625100-mRNA-1
chr4_3 exon 4093599 4093725 4093599 ID=Msa0625100-mRNA-1:exon:999;Parent=Msa0625100-mRNA-1
chr4_3 exon 4093962 4094062 4093962 ID=Msa0625100-mRNA-1:exon:1000;Parent=Msa0625100-mRNA-1
chr4_3 exon 4094197 4094322 4094197 ID=Msa0625100-mRNA-1:exon:1001;Parent=Msa0625100-mRNA-1
chr4_3 exon 4094462 4094526 4094462 ID=Msa0625100-mRNA-1:exon:1002;Parent=Msa0625100-mRNA-1
chr4_3 exon 4095256 4095337 4095256 ID=Msa0625100-mRNA-1:exon:1003;Parent=Msa0625100-mRNA-1
chr4_3 exon 4095418 4095500 4095418 ID=Msa0625100-mRNA-1:exon:1004;Parent=Msa0625100-mRNA-1
chr4_3 exon 4096029 4096383 4096029 ID=Msa0625100-mRNA-1:exon:1005;Parent=Msa0625100-mRNA-1
chr4_3 five_prime_UTR 4090012 4090163 4090012 ID=Msa0625100-mRNA-1:five_prime_utr;Parent=Msa0625100-mRNA-1
chr4_3 CDS 4090164 4090267 4090164 ID=Msa0625100-mRNA-1:cds;Parent=Msa0625100-mRNA-1
chr4_3 CDS 4090373 4090595 4090373 ID=Msa0625100-mRNA-1:cds;Parent=Msa0625100-mRNA-1
chr4_3 CDS 4091162 4091217 4091162 ID=Msa0625100-mRNA-1:cds;Parent=Msa0625100-mRNA-1
chr4_3 CDS 4092260 4092362 4092260 ID=Msa0625100-mRNA-1:cds;Parent=Msa0625100-mRNA-1
chr4_3 CDS 4092455 4092520 4092455 ID=Msa0625100-mRNA-1:cds;Parent=Msa0625100-mRNA-1
chr4_3 CDS 4093030 4093143 4093030 ID=Msa0625100-mRNA-1:cds;Parent=Msa0625100-mRNA-1
chr4_3 CDS 4093599 4093725 4093599 ID=Msa0625100-mRNA-1:cds;Parent=Msa0625100-mRNA-1
chr4_3 CDS 4093962 4094062 4093962 ID=Msa0625100-mRNA-1:cds;Parent=Msa0625100-mRNA-1
chr4_3 CDS 4094197 4094322 4094197 ID=Msa0625100-mRNA-1:cds;Parent=Msa0625100-mRNA-1
chr4_3 CDS 4094462 4094526 4094462 ID=Msa0625100-mRNA-1:cds;Parent=Msa0625100-mRNA-1
chr4_3 CDS 4095256 4095337 4095256 ID=Msa0625100-mRNA-1:cds;Parent=Msa0625100-mRNA-1
chr4_3 CDS 4095418 4095500 4095418 ID=Msa0625100-mRNA-1:cds;Parent=Msa0625100-mRNA-1
chr4_3 CDS 4096029 4096095 4096029 ID=Msa0625100-mRNA-1:cds;Parent=Msa0625100-mRNA-1
chr4_3 three_prime_UTR 4096096 4096383 4096096 ID=Msa0625100-mRNA-1:three_prime_utr;Parent=Msa0625100-mRNA-1
Gene Sequence

>Msa0625100

ATGGTGGAATCGAAGAAGAAGACCGAAACAGTTCATTCACCACTCGTCACATATGCTTCTATGATATCTCTTCTCACACTTGCTCCTCCTTTCGTCAATCTACTATGGTTTACGATGACGGCTATGGATGGATCAATTTTGAAGACATTTGATTATTTAAACAATAATGGTTTACAAGGTTTTGTTAATCTATGGCCTAAACCAACACTTCTAGCTTTCCAAATTATAGCTGTTTATGCTGCTTTTGAAGCTTCACTTCAGCTTCTTCTTCCTGGTCAAACTGTTTACGGTCCTATTTCTCCTACCGGTAACCGCCCTGTCTATAAGGCAAATGGTGTTGCTGCATATTTAGTTACTTTGGTTACTTACATTGCACTTTGGCGGTTTGGGATATTCAACCCAACAATCGTTTATGATCATTTGGGGGAGATATATTCCACACTCAACTTTGGGAGCTTTATCTTTTGTATTTTCTTATACATAAAAGGTCATTTGGCACCATCTTCTACTGATTCTGGTTCAAGTGGGAACATAATCATCGATTTTTACTGGGGTATGGAGCTCTATCCACGCATTGGAAAATATTTTGACATAAAAGTTTTCACAAACTGCAGATTTGGAATGATGTCATGGGCTGTTCTGGCACTTACCTACTGCATAAAGCAGTATGAAGAAAATGGGAAAGTAGCTGACTCAATGCTTGTAAATACTACATTAATGCTGGTGTATGTTACCAAGTTTTTCTGGTGGGAAGCTGGATACTGGAACACGATGGATATTGCACACGATCGAGCTGGATTTTATATTTGCTGGGGCTGTTTGGTTTGGGTTCCATCAGTGTATACATCTCCTGGAATGTACCTTGTCAACCATCCAGTGAATCTTGGCACCCAGCTAGCACTCTTTATTTTAGTGGCTGGCATTCTGTGCATATACATCAACTATGATTGTGACAGGCAAAGGCAAGAGTTTCGTAGGACAAATGGAAAAAGCTTGGTCTGGGGAAAAGCTCCATCAAAGATAGAAGCCTCATATACCACTGCTTCCGGGGAAACAAAAAGAAGCCTTCTTTTAACCTCTGGATGGTGGGGATTAGCTCGTCATTTTCATTATGTCCCCGAAATATTAGCTGCATTCTTCTGGACAGTCCCAGCTCTATTCAATCACTTCTTGCCTTACTTCTACGTGATATTTCTTATTATCCTTCTTTTTGATCGAGCAAAAAGGGATGATGATCGATGCAGATCCAAGTATGGAAAGTACTGGAAACTCTATTGCGACAGGGTACCTTACAGAATCATTCCAGGAATATATTGA

Protein sequence

>Msa0625100

MVESKKKTETVHSPLVTYASMISLLTLAPPFVNLLWFTMTAMDGSILKTFDYLNNNGLQGFVNLWPKPTLLAFQIIAVYAAFEASLQLLLPGQTVYGPISPTGNRPVYKANGVAAYLVTLVTYIALWRFGIFNPTIVYDHLGEIYSTLNFGSFIFCIFLYIKGHLAPSSTDSGSSGNIIIDFYWGMELYPRIGKYFDIKVFTNCRFGMMSWAVLALTYCIKQYEENGKVADSMLVNTTLMLVYVTKFFWWEAGYWNTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVNLGTQLALFILVAGILCIYINYDCDRQRQEFRRTNGKSLVWGKAPSKIEASYTTASGETKRSLLLTSGWWGLARHFHYVPEILAAFFWTVPALFNHFLPYFYVIFLIILLFDRAKRDDDRCRSKYGKYWKLYCDRVPYRIIPGIY*