Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0625100 | XP_024638437.2 | 98.402 | 438 | 7 | 0 | 1 | 438 | 1 | 438 | 0.0 | 895 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0625100 | sp|Q9LDU6|ST7R_ARATH | 83.063 | 431 | 73 | 0 | 8 | 438 | 2 | 432 | 0.0 | 759 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0625100 | A0A396IDF0 | 97.039 | 439 | 11 | 2 | 1 | 438 | 1 | 438 | 0.0 | 875 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0625100 | Msa0670280 | 0.962882 | 2.072940e-121 | -8.615850e-47 |
Msa0625100 | Msa0792250 | 0.815611 | 8.458582e-52 | -8.615850e-47 |
Msa0625100 | Msa1019420 | 0.801117 | 1.047218e-48 | -8.615850e-47 |
Msa0625100 | Msa1020620 | 0.817986 | 2.481227e-52 | -8.615850e-47 |
Msa0625100 | Msa1044520 | -0.818196 | 2.223590e-52 | -8.615850e-47 |
Msa0625100 | Msa1089850 | 0.889223 | 2.935143e-73 | -8.615850e-47 |
Msa0625100 | Msa1113820 | 0.809666 | 1.690247e-50 | -8.615850e-47 |
Msa0625100 | Msa1198360 | 0.800267 | 1.561873e-48 | -8.615850e-47 |
Msa0625100 | Msa1264300 | -0.823087 | 1.673172e-53 | -8.615850e-47 |
Msa0625100 | Msa1269290 | 0.867085 | 1.774018e-65 | -8.615850e-47 |
Msa0625100 | Msa1334350 | -0.828132 | 1.065501e-54 | -8.615850e-47 |
Msa0625100 | Msa1402340 | -0.826279 | 2.959404e-54 | -8.615850e-47 |
Msa0300470 | Msa0625100 | 0.821909 | 3.142083e-53 | -8.615850e-47 |
Msa0316170 | Msa0625100 | 0.805696 | 1.178439e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0625100 | MtrunA17_Chr4g0051521 | 97.039 | 439 | 11 | 2 | 1 | 438 | 1 | 438 | 0.0 | 875 |
Msa0625100 | MtrunA17_Chr4g0000371 | 99.357 | 311 | 2 | 0 | 128 | 438 | 5 | 315 | 0.0 | 647 |
Msa0625100 | MtrunA17_Chr4g0051511 | 79.944 | 354 | 9 | 3 | 129 | 435 | 6 | 344 | 0.0 | 556 |
Msa0625100 | MtrunA17_Chr4g0000381 | 95.413 | 109 | 5 | 0 | 1 | 109 | 1 | 109 | 3.61e-69 | 215 |
Msa0625100 | MtrunA17_Chr1g0179361 | 29.365 | 378 | 240 | 8 | 68 | 438 | 12 | 369 | 8.11e-42 | 152 |
Msa0625100 | MtrunA17_Chr4g0051501 | 86.486 | 74 | 8 | 2 | 1 | 73 | 1 | 73 | 3.46e-34 | 122 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0625100 | AT1G50430.1 | 83.063 | 431 | 73 | 0 | 8 | 438 | 2 | 432 | 0.0 | 759 |
Msa0625100 | AT1G50430.2 | 83.063 | 431 | 72 | 1 | 8 | 438 | 2 | 431 | 0.0 | 755 |
Msa0625100 | AT3G52940.1 | 29.921 | 381 | 234 | 9 | 68 | 438 | 12 | 369 | 1.14e-48 | 170 |
Msa0625100 | AT3G52940.2 | 28.444 | 225 | 141 | 7 | 68 | 282 | 12 | 226 | 6.22e-20 | 89.4 |
Find 106 sgRNAs with CRISPR-Local
Find 366 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGAGGGAGATTTCTATTTA+TGG | 0.135633 | 4_3:-4096304 | None:intergenic |
CTATGCATCTTTACCTTTGA+TGG | 0.168728 | 4_3:-4094314 | None:intergenic |
GCACCATCTTCTACTGATTC+TGG | 0.211719 | 4_3:+4092464 | Msa0625100:CDS |
TCTTGATAGTATGAAGAAAA+TGG | 0.213254 | 4_3:+4093590 | Msa0625100:intron |
TAACATTCGCTTACAAAATA+AGG | 0.224015 | 4_3:-4096221 | None:intergenic |
AAATATTAGCTGCATTCTTC+TGG | 0.228561 | 4_3:+4095291 | Msa0625100:CDS |
GCGAATGTTATGATTTAAAA+TGG | 0.252269 | 4_3:+4096234 | Msa0625100:three_prime_UTR |
CAGCATAAACAGCTATAATT+TGG | 0.256261 | 4_3:-4090487 | None:intergenic |
AACAATCGTTTATGATCATT+TGG | 0.260995 | 4_3:+4092278 | Msa0625100:CDS |
TCACTTCAGCTTCTTCTTCC+TGG | 0.263974 | 4_3:+4090521 | Msa0625100:CDS |
AAGAATGCAGCTAATATTTC+GGG | 0.270796 | 4_3:-4095287 | None:intergenic |
CTTCCTGGTCAAACTGTTTA+CGG | 0.284937 | 4_3:+4090536 | Msa0625100:CDS |
TTGCTGGGGCTGTTTGGTTT+GGG | 0.285386 | 4_3:+4093975 | Msa0625100:CDS |
TTTGCTGGGGCTGTTTGGTT+TGG | 0.288712 | 4_3:+4093974 | Msa0625100:CDS |
TTTGATTATTTAAACAATAA+TGG | 0.292208 | 4_3:+4090416 | Msa0625100:CDS |
GAAGAATGCAGCTAATATTT+CGG | 0.298216 | 4_3:-4095288 | None:intergenic |
TTATATTTGCTGGGGCTGTT+TGG | 0.304151 | 4_3:+4093969 | Msa0625100:CDS |
TCTGGTGGGAAGCTGGATAC+TGG | 0.304373 | 4_3:+4093675 | Msa0625100:CDS |
ACAATCGTTTATGATCATTT+GGG | 0.320331 | 4_3:+4092279 | Msa0625100:CDS |
CGGTAACCGCCCTGTCTATA+AGG | 0.331256 | 4_3:+4090574 | Msa0625100:CDS |
AATGATGTCATGGGCTGTTC+TGG | 0.333436 | 4_3:+4093098 | Msa0625100:CDS |
GCCTCATATACCACTGCTTC+CGG | 0.355351 | 4_3:+4094468 | Msa0625100:CDS |
GTTAGTAAGAAGATCGAAAA+TGG | 0.358318 | 4_3:+4090145 | Msa0625100:exon |
CGGTTACCGGTAGGAGAAAT+AGG | 0.360461 | 4_3:-4090560 | None:intergenic |
TGAGGGAGATTTCTATTTAT+GGG | 0.364154 | 4_3:-4096303 | None:intergenic |
CCTCATATACCACTGCTTCC+GGG | 0.368880 | 4_3:+4094469 | Msa0625100:CDS |
TTTGTATTTCTTCAGGCAAA+TGG | 0.379608 | 4_3:+4091147 | Msa0625100:intron |
TATATTCCACACTCAACTTT+GGG | 0.397950 | 4_3:+4092307 | Msa0625100:CDS |
TGCTGCATATTTAGTTACTT+TGG | 0.407451 | 4_3:+4091173 | Msa0625100:CDS |
CTTGATAGTATGAAGAAAAT+GGG | 0.409251 | 4_3:+4093591 | Msa0625100:intron |
AATGATCATAAACGATTGTT+GGG | 0.411459 | 4_3:-4092275 | None:intergenic |
AAATGATCATAAACGATTGT+TGG | 0.417130 | 4_3:-4092276 | None:intergenic |
CTTATAGACAGGGCGGTTAC+CGG | 0.418802 | 4_3:-4090573 | None:intergenic |
ATATATTCCACACTCAACTT+TGG | 0.422367 | 4_3:+4092306 | Msa0625100:CDS |
TTATATTTGATAGGGTCATT+TGG | 0.422502 | 4_3:+4092442 | Msa0625100:intron |
AGTCATCATCAATATATTCC+TGG | 0.424853 | 4_3:-4096081 | None:intergenic |
AGAAATATCACGTAGAAGTA+AGG | 0.430755 | 4_3:-4095424 | None:intergenic |
AAAGCTAGAAGTGTTGGTTT+AGG | 0.432868 | 4_3:-4090464 | None:intergenic |
GTCAACCATCCAGTGAATCT+TGG | 0.433126 | 4_3:+4094033 | Msa0625100:CDS |
CAAGAGTTTCGTAGGACAAA+TGG | 0.441736 | 4_3:+4094266 | Msa0625100:CDS |
TTACTTACATTGCACTTTGG+CGG | 0.449956 | 4_3:+4091196 | Msa0625100:CDS |
CTTACGTGATTGAATAGAGC+TGG | 0.458940 | 4_3:-4095320 | None:intergenic |
TATATTGATGATGACTTGTC+TGG | 0.471587 | 4_3:+4096088 | Msa0625100:exon |
GTACCTTACAGAATCATTCC+AGG | 0.476122 | 4_3:+4096063 | Msa0625100:CDS |
GTTTACCATTGCATCTTAAG+TGG | 0.477376 | 4_3:-4096164 | None:intergenic |
CCATCAGTGTATACATCTCC+TGG | 0.477762 | 4_3:+4094000 | Msa0625100:CDS |
CCCGGAAGCAGTGGTATATG+AGG | 0.482468 | 4_3:-4094469 | None:intergenic |
TACGGTCCTATTTCTCCTAC+CGG | 0.485371 | 4_3:+4090554 | Msa0625100:CDS |
ATTTGGAAAGCTAGAAGTGT+TGG | 0.486102 | 4_3:-4090470 | None:intergenic |
ACCTGGGTGCCAAGATTCAC+TGG | 0.487320 | 4_3:-4094042 | None:intergenic |
TGGTTGACAAGGTACATTCC+AGG | 0.489773 | 4_3:-4094018 | None:intergenic |
CTTGACAGAATTCTCCTCCA+TGG | 0.491036 | 4_3:+4096331 | Msa0625100:three_prime_UTR |
TTAAACAATAATGGTTTACA+AGG | 0.495899 | 4_3:+4090425 | Msa0625100:CDS |
CATGGCAGCAAGTGAAGGAT+AGG | 0.502904 | 4_3:-4096114 | None:intergenic |
GACACACAGACCTTATAGAC+AGG | 0.514299 | 4_3:-4090584 | None:intergenic |
ATTCCTGGAATGATTCTGTA+AGG | 0.518813 | 4_3:-4096066 | None:intergenic |
ATGGTTTACGATGACGGCTA+TGG | 0.519049 | 4_3:+4090373 | Msa0625100:CDS |
CATGCAGGTATGGAAAGTAC+TGG | 0.526601 | 4_3:+4096022 | Msa0625100:intron |
CCAGGAGATGTATACACTGA+TGG | 0.529275 | 4_3:-4094000 | None:intergenic |
ACTATGATTGTGACAGGCAA+AGG | 0.530436 | 4_3:+4094243 | Msa0625100:CDS |
ATGAAGATGGTTTACGATGA+CGG | 0.530950 | 4_3:+4090367 | Msa0625100:intron |
ACTGGAAACTCTATTGCGAC+AGG | 0.531995 | 4_3:+4096040 | Msa0625100:CDS |
TGTAAATACTACATTAATGC+TGG | 0.542689 | 4_3:+4093634 | Msa0625100:CDS |
TCTACTGATTCTGGTTCAAG+TGG | 0.545372 | 4_3:+4092473 | Msa0625100:CDS |
ATGGAGCTCTATCCACGCAT+TGG | 0.545997 | 4_3:+4093033 | Msa0625100:CDS |
ACATCAACTATGATTGTGAC+AGG | 0.553357 | 4_3:+4094237 | Msa0625100:CDS |
TTACGTGATTGAATAGAGCT+GGG | 0.555286 | 4_3:-4095319 | None:intergenic |
CTCATATACCACTGCTTCCG+GGG | 0.558627 | 4_3:+4094470 | Msa0625100:CDS |
GAGTGGTGAATGAACTGTTT+CGG | 0.559163 | 4_3:-4090186 | None:intergenic |
CAATCGTTTATGATCATTTG+GGG | 0.573140 | 4_3:+4092280 | Msa0625100:CDS |
TTCTGCCACTTAAGATGCAA+TGG | 0.573566 | 4_3:+4096159 | Msa0625100:three_prime_UTR |
AGTCGAAGACGCTAAGTCGT+AGG | 0.577282 | 4_3:+4090121 | Msa0625100:five_prime_UTR |
GTAAACATGGCAGCAAGTGA+AGG | 0.580459 | 4_3:-4096119 | None:intergenic |
GCAGATTTGGAATGATGTCA+TGG | 0.581369 | 4_3:+4093088 | Msa0625100:CDS |
AGTCCTCGTATATATGAGCT+AGG | 0.581749 | 4_3:+4096354 | Msa0625100:three_prime_UTR |
TGGTTACTTACATTGCACTT+TGG | 0.584119 | 4_3:+4091193 | Msa0625100:CDS |
TCCAGTGAATCTTGGCACCC+AGG | 0.587162 | 4_3:+4094041 | Msa0625100:CDS |
GAACCAGAATCAGTAGAAGA+TGG | 0.593438 | 4_3:-4092467 | None:intergenic |
TACAGTAGATTGACGAAAGG+AGG | 0.597491 | 4_3:-4090248 | None:intergenic |
TTTACGATGACGGCTATGGA+TGG | 0.598888 | 4_3:+4090377 | Msa0625100:CDS |
ACCATCCAGAGGTTAAAAGA+AGG | 0.603425 | 4_3:-4094506 | None:intergenic |
CTCAACCTGCTTTATGCAGT+AGG | 0.603786 | 4_3:-4093127 | None:intergenic |
ATGGATATTGCACACGATCG+AGG | 0.603895 | 4_3:+4093704 | Msa0625100:CDS |
TCATATATACGAGGACTCCA+TGG | 0.612699 | 4_3:-4096348 | None:intergenic |
CTGGGGAAAAGCTCCATCAA+AGG | 0.613205 | 4_3:+4094301 | Msa0625100:CDS |
ACTTACCTACTGCATAAAGC+AGG | 0.622001 | 4_3:+4093122 | Msa0625100:CDS |
ACTTACAGTAGATTGACGAA+AGG | 0.623164 | 4_3:-4090251 | None:intergenic |
CTACTGATTCTGGTTCAAGT+GGG | 0.624307 | 4_3:+4092474 | Msa0625100:CDS |
AGTAAGAAGATCGAAAATGG+TGG | 0.624363 | 4_3:+4090148 | Msa0625100:exon |
AAAGCTCCCAAAGTTGAGTG+TGG | 0.627248 | 4_3:-4092313 | None:intergenic |
GGCAAAGGCAAGAGTTTCGT+AGG | 0.627927 | 4_3:+4094258 | Msa0625100:CDS |
GGGTGCCAAGATTCACTGGA+TGG | 0.644744 | 4_3:-4094038 | None:intergenic |
CAGATTTGGAATGATGTCAT+GGG | 0.645422 | 4_3:+4093089 | Msa0625100:CDS |
AAGGGATACGTACCATCCAG+AGG | 0.650541 | 4_3:-4094517 | None:intergenic |
GGACCGTAAACAGTTTGACC+AGG | 0.651599 | 4_3:-4090539 | None:intergenic |
GATTCACTGGATGGTTGACA+AGG | 0.654390 | 4_3:-4094029 | None:intergenic |
TAGACAGGGCGGTTACCGGT+AGG | 0.656132 | 4_3:-4090569 | None:intergenic |
CTGGAAACTCTATTGCGACA+GGG | 0.658826 | 4_3:+4096041 | Msa0625100:CDS |
AATCGTTTATGATCATTTGG+GGG | 0.662804 | 4_3:+4092281 | Msa0625100:CDS |
ATAGAAGCATATGTGACGAG+TGG | 0.675409 | 4_3:-4090203 | None:intergenic |
ACACACAGACCTTATAGACA+GGG | 0.685969 | 4_3:-4090583 | None:intergenic |
AGCTGGATACTGGAACACGA+TGG | 0.692506 | 4_3:+4093685 | Msa0625100:CDS |
ATTCCTAGCTCATATATACG+AGG | 0.721276 | 4_3:-4096357 | None:intergenic |
AGAATGCAGCTAATATTTCG+GGG | 0.723462 | 4_3:-4095286 | None:intergenic |
TATATACGAGGACTCCATGG+AGG | 0.724414 | 4_3:-4096345 | None:intergenic |
CACAGACCTTATAGACAGGG+CGG | 0.753720 | 4_3:-4090580 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTGATTATTTAAACAATAA+TGG | + | chr4_3:4090416-4090435 | Msa0625100:CDS | 10.0% |
!!! | AAACCAATTTTTTTTTTTTT+TGG | + | chr4_3:4090799-4090818 | Msa0625100:intron | 10.0% |
!! | AAATGAAAAATCAATTTAAT+CGG | - | chr4_3:4091441-4091460 | None:intergenic | 10.0% |
!!! | CAAAAATATAATGTTTTTAA+GGG | - | chr4_3:4094538-4094557 | None:intergenic | 10.0% |
!!! | TCAAAAATATAATGTTTTTA+AGG | - | chr4_3:4094539-4094558 | None:intergenic | 10.0% |
!! | AATATATATTATGAGATTAA+GGG | - | chr4_3:4095150-4095169 | None:intergenic | 10.0% |
!! | AAATATATATTATGAGATTA+AGG | - | chr4_3:4095151-4095170 | None:intergenic | 10.0% |
!! | GAACCAAAAAAAAAAAAAAT+TGG | - | chr4_3:4090805-4090824 | None:intergenic | 15.0% |
!! | TTCTTATCTTATTAATTGAA+AGG | + | chr4_3:4091223-4091242 | Msa0625100:intron | 15.0% |
!!! | TTATTTTCTGAAATAATTAC+AGG | - | chr4_3:4091318-4091337 | None:intergenic | 15.0% |
!! | AAAAAAAATTCAAAAGTAGA+TGG | - | chr4_3:4093348-4093367 | None:intergenic | 15.0% |
!! | ATATGAATCATATTTATATG+TGG | + | chr4_3:4093402-4093421 | Msa0625100:intron | 15.0% |
!! | TGAAAAGAATATTAGAAATA+AGG | - | chr4_3:4094127-4094146 | None:intergenic | 15.0% |
!!! | TTAGCAATAATATTTCTATA+TGG | - | chr4_3:4094691-4094710 | None:intergenic | 15.0% |
!! | AAACAATAGTTTATACATTT+AGG | + | chr4_3:4094739-4094758 | Msa0625100:intron | 15.0% |
!! | AACAATAGTTTATACATTTA+GGG | + | chr4_3:4094740-4094759 | Msa0625100:intron | 15.0% |
!! | TGAAAAAATAAAAAGTTGTT+TGG | + | chr4_3:4094807-4094826 | Msa0625100:intron | 15.0% |
!!! | TGATTTTTAAAAACAGTTTT+AGG | - | chr4_3:4095022-4095041 | None:intergenic | 15.0% |
!!! | ATATATTTGATTTTTCTACT+TGG | + | chr4_3:4095163-4095182 | Msa0625100:intron | 15.0% |
!! | AAGTGTATATATTACAATTT+AGG | - | chr4_3:4095788-4095807 | None:intergenic | 15.0% |
!!! | CACAATGTTTGTTTATTTTT+GGG | - | chr4_3:4090029-4090048 | None:intergenic | 20.0% |
!!! | ACACAATGTTTGTTTATTTT+TGG | - | chr4_3:4090030-4090049 | None:intergenic | 20.0% |
!! | TTAAACAATAATGGTTTACA+AGG | + | chr4_3:4090425-4090444 | Msa0625100:CDS | 20.0% |
!!! | ATTGATTTTTCATTTCATCT+TGG | + | chr4_3:4091446-4091465 | Msa0625100:intron | 20.0% |
!!! | TATCCTTTTAAATTTCACTT+TGG | + | chr4_3:4091705-4091724 | Msa0625100:intron | 20.0% |
!! | TCAAACAATTTCTTCTAATA+TGG | - | chr4_3:4092891-4092910 | None:intergenic | 20.0% |
!!! | CGTTTTTTTATATGAATAAC+AGG | + | chr4_3:4092935-4092954 | Msa0625100:intron | 20.0% |
!! | AACTACAAATAGGTATTTAA+AGG | - | chr4_3:4093243-4093262 | None:intergenic | 20.0% |
!! | GAAATATTATTGCTAACTAT+AGG | + | chr4_3:4094695-4094714 | Msa0625100:intron | 20.0% |
!!! | TTTTAAAAAGTGAATCAAAC+AGG | - | chr4_3:4094766-4094785 | None:intergenic | 20.0% |
!! | AAGTTAAAGAAAATTACGTT+TGG | - | chr4_3:4095050-4095069 | None:intergenic | 20.0% |
!! | TAAACAAAAATAGGTAAACA+TGG | - | chr4_3:4096135-4096154 | None:intergenic | 20.0% |
! | TGAATTGAATTGAATGAAGA+TGG | + | chr4_3:4090354-4090373 | Msa0625100:intron | 25.0% |
!!! | TACAAGGTTTTGTTAATCTA+TGG | + | chr4_3:4090441-4090460 | Msa0625100:CDS | 25.0% |
!! | TTTTTGTCTTATACGATGTT+TGG | - | chr4_3:4090901-4090920 | None:intergenic | 25.0% |
! | TCTATGTGTTACGATTTAAT+TGG | + | chr4_3:4091021-4091040 | Msa0625100:intron | 25.0% |
! | AGAAAAGTAACAAAGAAGAT+AGG | + | chr4_3:4091246-4091265 | Msa0625100:intron | 25.0% |
! | AAAGAAAAGAAAATTGGCAT+AGG | + | chr4_3:4091546-4091565 | Msa0625100:intron | 25.0% |
! | ATAAGACTTTGTATGATCTT+AGG | + | chr4_3:4091603-4091622 | Msa0625100:intron | 25.0% |
! | CATCCAAAGTGAAATTTAAA+AGG | - | chr4_3:4091711-4091730 | None:intergenic | 25.0% |
! | TGTTCTGTGTTTATGAAAAT+TGG | + | chr4_3:4091729-4091748 | Msa0625100:intron | 25.0% |
! | CTTCATAGATAATGTATGAT+GGG | + | chr4_3:4091980-4091999 | Msa0625100:intron | 25.0% |
! | ATAAAGCCTTGAAATTCAAA+AGG | - | chr4_3:4092068-4092087 | None:intergenic | 25.0% |
! | CTTTATGAAGATAGGTTTAT+AGG | + | chr4_3:4092082-4092101 | Msa0625100:intron | 25.0% |
!! | AATTTTTGCATGTATGTTTC+AGG | + | chr4_3:4092238-4092257 | Msa0625100:intron | 25.0% |
! | AATGATCATAAACGATTGTT+GGG | - | chr4_3:4092278-4092297 | None:intergenic | 25.0% |
! | AAATGATCATAAACGATTGT+TGG | - | chr4_3:4092279-4092298 | None:intergenic | 25.0% |
! | AACAATCGTTTATGATCATT+TGG | + | chr4_3:4092278-4092297 | Msa0625100:CDS | 25.0% |
! | ACAATCGTTTATGATCATTT+GGG | + | chr4_3:4092279-4092298 | Msa0625100:CDS | 25.0% |
! | AAATTCAATGTAAATTGCAC+AGG | - | chr4_3:4092409-4092428 | None:intergenic | 25.0% |
! | ACTCAAGTGTTATATTTGAT+AGG | + | chr4_3:4092433-4092452 | Msa0625100:intron | 25.0% |
! | CTCAAGTGTTATATTTGATA+GGG | + | chr4_3:4092434-4092453 | Msa0625100:intron | 25.0% |
! | TTATATTTGATAGGGTCATT+TGG | + | chr4_3:4092442-4092461 | Msa0625100:intron | 25.0% |
!!! | ACATAATCATCGATTTTTAC+TGG | + | chr4_3:4092498-4092517 | Msa0625100:CDS | 25.0% |
!!! | CATAATCATCGATTTTTACT+GGG | + | chr4_3:4092499-4092518 | Msa0625100:CDS | 25.0% |
! | TTCTTACCATTTATTTGCAT+TGG | + | chr4_3:4092537-4092556 | Msa0625100:intron | 25.0% |
! | CAATTTCCAATGCAAATAAA+TGG | - | chr4_3:4092546-4092565 | None:intergenic | 25.0% |
!! | AGAAATGTTTCAACGTTTTA+TGG | + | chr4_3:4092847-4092866 | Msa0625100:intron | 25.0% |
! | CATATAAAAAAACGTCTCAA+GGG | - | chr4_3:4092929-4092948 | None:intergenic | 25.0% |
! | TCATATAAAAAAACGTCTCA+AGG | - | chr4_3:4092930-4092949 | None:intergenic | 25.0% |
! | GTTGAGATCTAATTTATGAT+AGG | + | chr4_3:4093378-4093397 | Msa0625100:intron | 25.0% |
! | ATCTTACTAGTATATGAATC+AGG | + | chr4_3:4093492-4093511 | Msa0625100:intron | 25.0% |
! | ACAATAGAGAATTAACCAAA+GGG | - | chr4_3:4093559-4093578 | None:intergenic | 25.0% |
! | AACAATAGAGAATTAACCAA+AGG | - | chr4_3:4093560-4093579 | None:intergenic | 25.0% |
!! | TCTTGATAGTATGAAGAAAA+TGG | + | chr4_3:4093590-4093609 | Msa0625100:intron | 25.0% |
!! | CTTGATAGTATGAAGAAAAT+GGG | + | chr4_3:4093591-4093610 | Msa0625100:intron | 25.0% |
! | TGTAAATACTACATTAATGC+TGG | + | chr4_3:4093634-4093653 | Msa0625100:CDS | 25.0% |
! | TAAATGAAATCCAGTTGTTA+TGG | - | chr4_3:4093853-4093872 | None:intergenic | 25.0% |
! | TGGATTTCATTTATCATGTT+TGG | + | chr4_3:4093860-4093879 | Msa0625100:intron | 25.0% |
! | TAGAAATAAGGAAAACTTTG+AGG | - | chr4_3:4094115-4094134 | None:intergenic | 25.0% |
!! | TTTCCCCTTTTTATGAAAAT+TGG | + | chr4_3:4094158-4094177 | Msa0625100:intron | 25.0% |
!! | AAGCCAATTTTCATAAAAAG+GGG | - | chr4_3:4094164-4094183 | None:intergenic | 25.0% |
!! | GAAGCCAATTTTCATAAAAA+GGG | - | chr4_3:4094165-4094184 | None:intergenic | 25.0% |
!! | AGAAGCCAATTTTCATAAAA+AGG | - | chr4_3:4094166-4094185 | None:intergenic | 25.0% |
! | TAAAGATGCATAGAATATAC+TGG | + | chr4_3:4094324-4094343 | Msa0625100:intron | 25.0% |
! | TATATAATGCAAGTCAGATT+GGG | + | chr4_3:4094384-4094403 | Msa0625100:intron | 25.0% |
! | ACTAAGTTGTTGTAATGATT+GGG | + | chr4_3:4094582-4094601 | Msa0625100:intron | 25.0% |
!! | GCAATAATATTTCTATATGG+AGG | - | chr4_3:4094688-4094707 | None:intergenic | 25.0% |
!!! | GTAGTTTTGCTTTTCAATTT+TGG | + | chr4_3:4094911-4094930 | Msa0625100:intron | 25.0% |
!!! | TGGTTTTGAAAACAAGAAAA+AGG | + | chr4_3:4094931-4094950 | Msa0625100:intron | 25.0% |
!!! | TTTTGAAAACAAGAAAAAGG+CGG | + | chr4_3:4094934-4094953 | Msa0625100:intron | 25.0% |
! | CAATTGCCATTAATGAAAAA+TGG | - | chr4_3:4094968-4094987 | None:intergenic | 25.0% |
!! | ATGTTCTCTAAGAAAATGTT+AGG | - | chr4_3:4095189-4095208 | None:intergenic | 25.0% |
! | GATAGAAAATAATGCTTACT+TGG | - | chr4_3:4095500-4095519 | None:intergenic | 25.0% |
! | TTAAAGCTTCAACAAAATCA+TGG | - | chr4_3:4095684-4095703 | None:intergenic | 25.0% |
! | TATATTACAATTTAGGCTGT+TGG | - | chr4_3:4095781-4095800 | None:intergenic | 25.0% |
! | TCATATCTATAGAAAACCAA+CGG | + | chr4_3:4095814-4095833 | Msa0625100:intron | 25.0% |
! | GAATTGTATATTTCAGAAAC+AGG | - | chr4_3:4095863-4095882 | None:intergenic | 25.0% |
! | TAACATTCGCTTACAAAATA+AGG | - | chr4_3:4096224-4096243 | None:intergenic | 25.0% |
! | GCGAATGTTATGATTTAAAA+TGG | + | chr4_3:4096234-4096253 | Msa0625100:three_prime_UTR | 25.0% |
! | AATTCTGTCAAGAAAAATGA+GGG | - | chr4_3:4096323-4096342 | None:intergenic | 25.0% |
GTTAGTAAGAAGATCGAAAA+TGG | + | chr4_3:4090145-4090164 | Msa0625100:exon | 30.0% | |
CAGCATAAACAGCTATAATT+TGG | - | chr4_3:4090490-4090509 | None:intergenic | 30.0% | |
TGAAAATAAAAGTTGTGCTG+TGG | - | chr4_3:4090837-4090856 | None:intergenic | 30.0% | |
! | CACACAAAGACAAACTTTTA+TGG | - | chr4_3:4090936-4090955 | None:intergenic | 30.0% |
AGTGTGTTTGATCTACTAAA+AGG | - | chr4_3:4091002-4091021 | None:intergenic | 30.0% | |
ATGTGTTACGATTTAATTGG+AGG | + | chr4_3:4091024-4091043 | Msa0625100:intron | 30.0% | |
TTTGTATTTCTTCAGGCAAA+TGG | + | chr4_3:4091147-4091166 | Msa0625100:intron | 30.0% | |
TGCTGCATATTTAGTTACTT+TGG | + | chr4_3:4091173-4091192 | Msa0625100:CDS | 30.0% | |
! | TTGAATGTATTGACATCTGT+CGG | + | chr4_3:4091343-4091362 | Msa0625100:intron | 30.0% |
ATTCAATAAGTTTCAGTGCT+AGG | + | chr4_3:4091396-4091415 | Msa0625100:intron | 30.0% | |
TTCAATAAGTTTCAGTGCTA+GGG | + | chr4_3:4091397-4091416 | Msa0625100:intron | 30.0% | |
TCTTTGTGGGAAGAATATAA+TGG | - | chr4_3:4091531-4091550 | None:intergenic | 30.0% | |
TCCCACAAAGAAAAGAAAAT+TGG | + | chr4_3:4091540-4091559 | Msa0625100:intron | 30.0% | |
! | GCCAATTTTCTTTTCTTTGT+GGG | - | chr4_3:4091544-4091563 | None:intergenic | 30.0% |
! | TGCCAATTTTCTTTTCTTTG+TGG | - | chr4_3:4091545-4091564 | None:intergenic | 30.0% |
ACATAATATTGATGTCTTCC+AGG | + | chr4_3:4091579-4091598 | Msa0625100:intron | 30.0% | |
!! | ATCATACAAAGTCTTATTCC+TGG | - | chr4_3:4091600-4091619 | None:intergenic | 30.0% |
! | TGATCTTAGGTTGTCATATA+TGG | + | chr4_3:4091616-4091635 | Msa0625100:intron | 30.0% |
GTGTTTATGAAAATTGGCAT+AGG | + | chr4_3:4091735-4091754 | Msa0625100:intron | 30.0% | |
GCTTCATAGATAATGTATGA+TGG | + | chr4_3:4091979-4091998 | Msa0625100:intron | 30.0% | |
! | GGTTATCCTTTTGAATTTCA+AGG | + | chr4_3:4092059-4092078 | Msa0625100:intron | 30.0% |
! | TTTCAAGGCTTTATGAAGAT+AGG | + | chr4_3:4092074-4092093 | Msa0625100:intron | 30.0% |
! | ATTTTCCTTACAAAGCAAGA+TGG | + | chr4_3:4092178-4092197 | Msa0625100:intron | 30.0% |
CAATCGTTTATGATCATTTG+GGG | + | chr4_3:4092280-4092299 | Msa0625100:CDS | 30.0% | |
AATCGTTTATGATCATTTGG+GGG | + | chr4_3:4092281-4092300 | Msa0625100:CDS | 30.0% | |
ATATATTCCACACTCAACTT+TGG | + | chr4_3:4092306-4092325 | Msa0625100:CDS | 30.0% | |
TATATTCCACACTCAACTTT+GGG | + | chr4_3:4092307-4092326 | Msa0625100:CDS | 30.0% | |
AAAATCTCTCGTCTGATTAT+TGG | + | chr4_3:4092635-4092654 | Msa0625100:intron | 30.0% | |
! | GAGAATTTTCCATGCATTAT+CGG | - | chr4_3:4092741-4092760 | None:intergenic | 30.0% |
!! | ACCAATCCTTTTGTTTAAAC+TGG | + | chr4_3:4092769-4092788 | Msa0625100:intron | 30.0% |
ACCAGTTTAAACAAAAGGAT+TGG | - | chr4_3:4092773-4092792 | None:intergenic | 30.0% | |
GTCAAACCAGTTTAAACAAA+AGG | - | chr4_3:4092778-4092797 | None:intergenic | 30.0% | |
GAATTTCAAAGTTCACATAG+TGG | - | chr4_3:4092820-4092839 | None:intergenic | 30.0% | |
AAGAATGACAGAAAGTTAGA+AGG | - | chr4_3:4093006-4093025 | None:intergenic | 30.0% | |
! | TCAAAATATTTTCCAATGCG+TGG | - | chr4_3:4093048-4093067 | None:intergenic | 30.0% |
AGTATCAGCAAACTACAAAT+AGG | - | chr4_3:4093253-4093272 | None:intergenic | 30.0% | |
! | TTTAACTTCCTTAGTTGCTT+TGG | + | chr4_3:4093425-4093444 | Msa0625100:intron | 30.0% |
TACTAGTAAGATCATGTTCA+TGG | - | chr4_3:4093484-4093503 | None:intergenic | 30.0% | |
! | TGTATGTTACCAAGTTTTTC+TGG | + | chr4_3:4093657-4093676 | Msa0625100:CDS | 30.0% |
! | AGCTGGATTTTATATTTGCT+GGG | + | chr4_3:4093960-4093979 | Msa0625100:intron | 30.0% |
CTGGATTACTATTTGTCATT+TGG | + | chr4_3:4094343-4094362 | Msa0625100:intron | 30.0% | |
CTATATAATGCAAGTCAGAT+TGG | + | chr4_3:4094383-4094402 | Msa0625100:intron | 30.0% | |
CACTAAGTTGTTGTAATGAT+TGG | + | chr4_3:4094581-4094600 | Msa0625100:intron | 30.0% | |
!! | CACATTTTAAGTCAAATGTC+AGG | - | chr4_3:4094641-4094660 | None:intergenic | 30.0% |
!!! | ATGGTGCCATTTTTCATTAA+TGG | + | chr4_3:4094959-4094978 | Msa0625100:intron | 30.0% |
AAGAATGCAGCTAATATTTC+GGG | - | chr4_3:4095290-4095309 | None:intergenic | 30.0% | |
GAAGAATGCAGCTAATATTT+CGG | - | chr4_3:4095291-4095310 | None:intergenic | 30.0% | |
AAATATTAGCTGCATTCTTC+TGG | + | chr4_3:4095291-4095310 | Msa0625100:CDS | 30.0% | |
AGAAATATCACGTAGAAGTA+AGG | - | chr4_3:4095427-4095446 | None:intergenic | 30.0% | |
! | TTTTTGCTCGATCAAAAAGA+AGG | - | chr4_3:4095456-4095475 | None:intergenic | 30.0% |
! | TTCTTTTTGATCGAGCAAAA+AGG | + | chr4_3:4095455-4095474 | Msa0625100:CDS | 30.0% |
! | TCTTTTTGATCGAGCAAAAA+GGG | + | chr4_3:4095456-4095475 | Msa0625100:CDS | 30.0% |
!! | TTAGTGTTGCTTATAGTTCT+TGG | + | chr4_3:4095522-4095541 | Msa0625100:intron | 30.0% |
! | AAAGTTTGCTTTATGAGTCA+TGG | + | chr4_3:4095611-4095630 | Msa0625100:intron | 30.0% |
! | ACTTTTTGCTAAAATCACAG+TGG | + | chr4_3:4095709-4095728 | Msa0625100:intron | 30.0% |
GATGATAAGTTTGACAGAAT+CGG | - | chr4_3:4095739-4095758 | None:intergenic | 30.0% | |
AATTCTTTATTGCATTGCAG+TGG | - | chr4_3:4095892-4095911 | None:intergenic | 30.0% | |
CATGAAATTTCATATTCCAC+TGG | - | chr4_3:4095958-4095977 | None:intergenic | 30.0% | |
CAGTGGAATATGAAATTTCA+TGG | + | chr4_3:4095956-4095975 | Msa0625100:intron | 30.0% | |
AGTCATCATCAATATATTCC+TGG | - | chr4_3:4096084-4096103 | None:intergenic | 30.0% | |
!! | TATATTGATGATGACTTGTC+TGG | + | chr4_3:4096088-4096107 | Msa0625100:exon | 30.0% |
CAGAAGCAGTAAACAAAAAT+AGG | - | chr4_3:4096144-4096163 | None:intergenic | 30.0% | |
TGAGGGAGATTTCTATTTAT+GGG | - | chr4_3:4096306-4096325 | None:intergenic | 30.0% | |
ATGAGGGAGATTTCTATTTA+TGG | - | chr4_3:4096307-4096326 | None:intergenic | 30.0% | |
GAATTCTGTCAAGAAAAATG+AGG | - | chr4_3:4096324-4096343 | None:intergenic | 30.0% | |
AGTAAGAAGATCGAAAATGG+TGG | + | chr4_3:4090148-4090167 | Msa0625100:exon | 35.0% | |
ACTTACAGTAGATTGACGAA+AGG | - | chr4_3:4090254-4090273 | None:intergenic | 35.0% | |
ATGAAGATGGTTTACGATGA+CGG | + | chr4_3:4090367-4090386 | Msa0625100:intron | 35.0% | |
!! | AAAGCTAGAAGTGTTGGTTT+AGG | - | chr4_3:4090467-4090486 | None:intergenic | 35.0% |
! | ATTTGGAAAGCTAGAAGTGT+TGG | - | chr4_3:4090473-4090492 | None:intergenic | 35.0% |
GTCGTTGTTTGTATTTCTTC+AGG | + | chr4_3:4091140-4091159 | Msa0625100:intron | 35.0% | |
TGGTTACTTACATTGCACTT+TGG | + | chr4_3:4091193-4091212 | Msa0625100:CDS | 35.0% | |
TTACTTACATTGCACTTTGG+CGG | + | chr4_3:4091196-4091215 | Msa0625100:CDS | 35.0% | |
AGAAGACTAGCAATGACTAA+TGG | - | chr4_3:4091677-4091696 | None:intergenic | 35.0% | |
!! | TCATTGCTAGTCTTCTCAAT+TGG | + | chr4_3:4091681-4091700 | Msa0625100:intron | 35.0% |
! | TGATCAAAATTTTCCCAGTG+TGG | + | chr4_3:4091909-4091928 | Msa0625100:intron | 35.0% |
! | CATAGATAATGTATGATGGG+TGG | + | chr4_3:4091983-4092002 | Msa0625100:intron | 35.0% |
!! | GTATGATGGGTGGATATATT+TGG | + | chr4_3:4091993-4092012 | Msa0625100:intron | 35.0% |
! | TCATTGCTAGTCTACTCAAT+TGG | + | chr4_3:4092038-4092057 | Msa0625100:intron | 35.0% |
!! | TTGCATGTATGTTTCAGGTT+TGG | + | chr4_3:4092243-4092262 | Msa0625100:intron | 35.0% |
!! | TGCATGTATGTTTCAGGTTT+GGG | + | chr4_3:4092244-4092263 | Msa0625100:intron | 35.0% |
AAGAAAGAGAATGTGAACGA+TGG | + | chr4_3:4092579-4092598 | Msa0625100:intron | 35.0% | |
TTGCATCAATGATCCTCTAA+AGG | - | chr4_3:4092668-4092687 | None:intergenic | 35.0% | |
!! | GAGGCGGTAATTTTAAAGAA+AGG | - | chr4_3:4092695-4092714 | None:intergenic | 35.0% |
! | TTCTTGGTTTAGAATGAGAG+AGG | - | chr4_3:4092714-4092733 | None:intergenic | 35.0% |
TCTCTCATTCTAAACCAAGA+AGG | + | chr4_3:4092713-4092732 | Msa0625100:intron | 35.0% | |
TCACATAGTGGCATTATGAA+CGG | - | chr4_3:4092808-4092827 | None:intergenic | 35.0% | |
GAATTAAACTCCACATGTCT+AGG | - | chr4_3:4092961-4092980 | None:intergenic | 35.0% | |
! | CCACCTTTTTCCATAAATGA+CGG | + | chr4_3:4092980-4092999 | Msa0625100:intron | 35.0% |
TAACTTTCTGTCATTCTTGC+AGG | + | chr4_3:4093008-4093027 | Msa0625100:intron | 35.0% | |
AACTTTCTGTCATTCTTGCA+GGG | + | chr4_3:4093009-4093028 | Msa0625100:intron | 35.0% | |
! | GTTTTCACAAACTGCAGATT+TGG | + | chr4_3:4093075-4093094 | Msa0625100:CDS | 35.0% |
! | CAGATTTGGAATGATGTCAT+GGG | + | chr4_3:4093089-4093108 | Msa0625100:CDS | 35.0% |
! | TTTTCCAACTAAATGCTGGA+TGG | - | chr4_3:4093206-4093225 | None:intergenic | 35.0% |
! | TGTGTTTTCCAACTAAATGC+TGG | - | chr4_3:4093210-4093229 | None:intergenic | 35.0% |
!! | AGGTTCAAACTGTTTCTACA+AGG | - | chr4_3:4093277-4093296 | None:intergenic | 35.0% |
TTGTAGAAACAGTTTGAACC+TGG | + | chr4_3:4093276-4093295 | Msa0625100:intron | 35.0% | |
TGTAGAAACAGTTTGAACCT+GGG | + | chr4_3:4093277-4093296 | Msa0625100:intron | 35.0% | |
TAGTAAGATCATGTTCATGG+AGG | - | chr4_3:4093481-4093500 | None:intergenic | 35.0% | |
TTTGTGAAATTTCCACCCTT+TGG | + | chr4_3:4093541-4093560 | Msa0625100:intron | 35.0% | |
ATAGAGAATTAACCAAAGGG+TGG | - | chr4_3:4093556-4093575 | None:intergenic | 35.0% | |
! | ATGTTACCAAGTTTTTCTGG+TGG | + | chr4_3:4093660-4093679 | Msa0625100:CDS | 35.0% |
!! | TGTTACCAAGTTTTTCTGGT+GGG | + | chr4_3:4093661-4093680 | Msa0625100:CDS | 35.0% |
! | GTTCTGCTGATATGTTCTTT+TGG | + | chr4_3:4093778-4093797 | Msa0625100:intron | 35.0% |
TGAAATCCAGTTGTTATGGA+AGG | - | chr4_3:4093849-4093868 | None:intergenic | 35.0% | |
AAATCCAGCTGCAAGATTTA+GGG | - | chr4_3:4093950-4093969 | None:intergenic | 35.0% | |
AAAATCCAGCTGCAAGATTT+AGG | - | chr4_3:4093951-4093970 | None:intergenic | 35.0% | |
! | CAGCTGGATTTTATATTTGC+TGG | + | chr4_3:4093959-4093978 | Msa0625100:intron | 35.0% |
!! | GCTGGATTTTATATTTGCTG+GGG | + | chr4_3:4093961-4093980 | Msa0625100:intron | 35.0% |
!!! | GCTAGCACTCTTTATTTTAG+TGG | + | chr4_3:4094196-4094215 | Msa0625100:intron | 35.0% |
ACATCAACTATGATTGTGAC+AGG | + | chr4_3:4094237-4094256 | Msa0625100:CDS | 35.0% | |
TAGGACAAATGGAAAAAGCT+TGG | + | chr4_3:4094277-4094296 | Msa0625100:CDS | 35.0% | |
AAATGGAAAAAGCTTGGTCT+GGG | + | chr4_3:4094283-4094302 | Msa0625100:CDS | 35.0% | |
CTATGCATCTTTACCTTTGA+TGG | - | chr4_3:4094317-4094336 | None:intergenic | 35.0% | |
!!! | AGCTTAAGCTCGCTATTTTT+TGG | + | chr4_3:4094607-4094626 | Msa0625100:intron | 35.0% |
!!! | GCTTAAGCTCGCTATTTTTT+GGG | + | chr4_3:4094608-4094627 | Msa0625100:intron | 35.0% |
!!! | CTTAAGCTCGCTATTTTTTG+GGG | + | chr4_3:4094609-4094628 | Msa0625100:intron | 35.0% |
AGAATGCAGCTAATATTTCG+GGG | - | chr4_3:4095289-4095308 | None:intergenic | 35.0% | |
TTACGTGATTGAATAGAGCT+GGG | - | chr4_3:4095322-4095341 | None:intergenic | 35.0% | |
! | ACTGAACTTTTCATTACCAG+TGG | + | chr4_3:4095939-4095958 | Msa0625100:intron | 35.0% |
TGAAAATTTCCACTTCATGC+AGG | + | chr4_3:4096007-4096026 | Msa0625100:intron | 35.0% | |
ATTCCTGGAATGATTCTGTA+AGG | - | chr4_3:4096069-4096088 | None:intergenic | 35.0% | |
GTTTACCATTGCATCTTAAG+TGG | - | chr4_3:4096167-4096186 | None:intergenic | 35.0% | |
ATTCCTAGCTCATATATACG+AGG | - | chr4_3:4096360-4096379 | None:intergenic | 35.0% | |
TTGTGTGTGTGTGTCTATCA+CGG | + | chr4_3:4090044-4090063 | Msa0625100:five_prime_UTR | 40.0% | |
GAGTGGTGAATGAACTGTTT+CGG | - | chr4_3:4090189-4090208 | None:intergenic | 40.0% | |
! | ATAGAAGCATATGTGACGAG+TGG | - | chr4_3:4090206-4090225 | None:intergenic | 40.0% |
TACAGTAGATTGACGAAAGG+AGG | - | chr4_3:4090251-4090270 | None:intergenic | 40.0% | |
CTTCCTGGTCAAACTGTTTA+CGG | + | chr4_3:4090536-4090555 | Msa0625100:CDS | 40.0% | |
ACACACAGACCTTATAGACA+GGG | - | chr4_3:4090586-4090605 | None:intergenic | 40.0% | |
AATTGGCATAGGAGATCTCA+CGG | + | chr4_3:4091746-4091765 | Msa0625100:intron | 40.0% | |
! | TTGAAGTGTCAGTGCTACAT+AGG | - | chr4_3:4091822-4091841 | None:intergenic | 40.0% |
! | GCACTGACACTTCAAATTGA+AGG | + | chr4_3:4091827-4091846 | Msa0625100:intron | 40.0% |
!! | ATGAAGCATTGACACAGACA+CGG | - | chr4_3:4091966-4091985 | None:intergenic | 40.0% |
GCAAACCATCTTGCTTTGTA+AGG | - | chr4_3:4092186-4092205 | None:intergenic | 40.0% | |
GAACCAGAATCAGTAGAAGA+TGG | - | chr4_3:4092470-4092489 | None:intergenic | 40.0% | |
!! | TCTACTGATTCTGGTTCAAG+TGG | + | chr4_3:4092473-4092492 | Msa0625100:CDS | 40.0% |
!! | CTACTGATTCTGGTTCAAGT+GGG | + | chr4_3:4092474-4092493 | Msa0625100:CDS | 40.0% |
! | TTGGTTTAGAATGAGAGAGG+CGG | - | chr4_3:4092711-4092730 | None:intergenic | 40.0% |
CCGTCATTTATGGAAAAAGG+TGG | - | chr4_3:4092983-4093002 | None:intergenic | 40.0% | |
AGGCCGTCATTTATGGAAAA+AGG | - | chr4_3:4092986-4093005 | None:intergenic | 40.0% | |
AGTTAGAAGGCCGTCATTTA+TGG | - | chr4_3:4092993-4093012 | None:intergenic | 40.0% | |
! | GCAGATTTGGAATGATGTCA+TGG | + | chr4_3:4093088-4093107 | Msa0625100:CDS | 40.0% |
ACTTACCTACTGCATAAAGC+AGG | + | chr4_3:4093122-4093141 | Msa0625100:CDS | 40.0% | |
GTAGAAACAGTTTGAACCTG+GGG | + | chr4_3:4093278-4093297 | Msa0625100:intron | 40.0% | |
CACTGTATCCAAAGCAACTA+AGG | - | chr4_3:4093436-4093455 | None:intergenic | 40.0% | |
! | CTTAGTTGCTTTGGATACAG+TGG | + | chr4_3:4093434-4093453 | Msa0625100:intron | 40.0% |
GAACATATCAGCAGAACGAT+AGG | - | chr4_3:4093775-4093794 | None:intergenic | 40.0% | |
ACCATACCTTCCATAACAAC+TGG | + | chr4_3:4093840-4093859 | Msa0625100:intron | 40.0% | |
TCCAGTTGTTATGGAAGGTA+TGG | - | chr4_3:4093844-4093863 | None:intergenic | 40.0% | |
GATTTAGGGACACGATAAAG+AGG | - | chr4_3:4093936-4093955 | None:intergenic | 40.0% | |
! | TTATATTTGCTGGGGCTGTT+TGG | + | chr4_3:4093969-4093988 | Msa0625100:CDS | 40.0% |
ACAACAGCTCAAACAGGAAT+GGG | - | chr4_3:4094073-4094092 | None:intergenic | 40.0% | |
AACAACAGCTCAAACAGGAA+TGG | - | chr4_3:4094074-4094093 | None:intergenic | 40.0% | |
CACAAAACAACAGCTCAAAC+AGG | - | chr4_3:4094079-4094098 | None:intergenic | 40.0% | |
!!! | CTGTTTGAGCTGTTGTTTTG+TGG | + | chr4_3:4094077-4094096 | Msa0625100:intron | 40.0% |
!!! | GCACTCTTTATTTTAGTGGC+TGG | + | chr4_3:4094200-4094219 | Msa0625100:CDS | 40.0% |
ACTATGATTGTGACAGGCAA+AGG | + | chr4_3:4094243-4094262 | Msa0625100:CDS | 40.0% | |
CAAGAGTTTCGTAGGACAAA+TGG | + | chr4_3:4094266-4094285 | Msa0625100:CDS | 40.0% | |
CAAATGGAAAAAGCTTGGTC+TGG | + | chr4_3:4094282-4094301 | Msa0625100:CDS | 40.0% | |
AATGGAAAAAGCTTGGTCTG+GGG | + | chr4_3:4094284-4094303 | Msa0625100:CDS | 40.0% | |
!! | AAGGCTTCTTTTTGTTTCCC+CGG | - | chr4_3:4094490-4094509 | None:intergenic | 40.0% |
! | AGAAGCCTTCTTTTAACCTC+TGG | + | chr4_3:4094501-4094520 | Msa0625100:CDS | 40.0% |
ACCATCCAGAGGTTAAAAGA+AGG | - | chr4_3:4094509-4094528 | None:intergenic | 40.0% | |
AAACAAGAAAAAGGCGGACA+TGG | + | chr4_3:4094940-4094959 | Msa0625100:intron | 40.0% | |
GGTAGCACAGAAAAGTGAAT+TGG | - | chr4_3:4095231-4095250 | None:intergenic | 40.0% | |
CTTACGTGATTGAATAGAGC+TGG | - | chr4_3:4095323-4095342 | None:intergenic | 40.0% | |
!! | GATGACAAAAAGAGCATCTG+TGG | - | chr4_3:4095576-4095595 | None:intergenic | 40.0% |
GTTTGCTTTATGAGTCATGG+CGG | + | chr4_3:4095614-4095633 | Msa0625100:intron | 40.0% | |
CCAAATCTGGTTGAAACAGT+AGG | - | chr4_3:4095840-4095859 | None:intergenic | 40.0% | |
CCTACTGTTTCAACCAGATT+TGG | + | chr4_3:4095837-4095856 | Msa0625100:intron | 40.0% | |
TTTCAGAAACAGGCCAAATC+TGG | - | chr4_3:4095853-4095872 | None:intergenic | 40.0% | |
ATTTCCACTTCATGCAGGTA+TGG | + | chr4_3:4096012-4096031 | Msa0625100:intron | 40.0% | |
GTACCTTACAGAATCATTCC+AGG | + | chr4_3:4096063-4096082 | Msa0625100:CDS | 40.0% | |
! | TTCTGCCACTTAAGATGCAA+TGG | + | chr4_3:4096159-4096178 | Msa0625100:three_prime_UTR | 40.0% |
TCATATATACGAGGACTCCA+TGG | - | chr4_3:4096351-4096370 | None:intergenic | 40.0% | |
AGTCCTCGTATATATGAGCT+AGG | + | chr4_3:4096354-4096373 | Msa0625100:three_prime_UTR | 40.0% | |
! | ATGGTTTACGATGACGGCTA+TGG | + | chr4_3:4090373-4090392 | Msa0625100:CDS | 45.0% |
! | TTTACGATGACGGCTATGGA+TGG | + | chr4_3:4090377-4090396 | Msa0625100:CDS | 45.0% |
TCACTTCAGCTTCTTCTTCC+TGG | + | chr4_3:4090521-4090540 | Msa0625100:CDS | 45.0% | |
! | TACGGTCCTATTTCTCCTAC+CGG | + | chr4_3:4090554-4090573 | Msa0625100:CDS | 45.0% |
GACACACAGACCTTATAGAC+AGG | - | chr4_3:4090587-4090606 | None:intergenic | 45.0% | |
CAGGGAGGGACAAAAATTTC+AGG | - | chr4_3:4090749-4090768 | None:intergenic | 45.0% | |
AGTTGTGCTGTGGTTTAGTG+AGG | - | chr4_3:4090827-4090846 | None:intergenic | 45.0% | |
AAGTGTCAGTGCTACATAGG+AGG | - | chr4_3:4091819-4091838 | None:intergenic | 45.0% | |
! | CAGTGTCTATGTGTTGGTGT+CGG | + | chr4_3:4091932-4091951 | Msa0625100:intron | 45.0% |
AAAGCTCCCAAAGTTGAGTG+TGG | - | chr4_3:4092316-4092335 | None:intergenic | 45.0% | |
!! | GCACCATCTTCTACTGATTC+TGG | + | chr4_3:4092464-4092483 | Msa0625100:CDS | 45.0% |
TATTGGCGTTGTGCCTTTAG+AGG | + | chr4_3:4092652-4092671 | Msa0625100:intron | 45.0% | |
! | ATGCATTATCGGTGCCTTCT+TGG | - | chr4_3:4092730-4092749 | None:intergenic | 45.0% |
!! | AAGAAGGCACCGATAATGCA+TGG | + | chr4_3:4092729-4092748 | Msa0625100:intron | 45.0% |
GAATAACAGGCCTAGACATG+TGG | + | chr4_3:4092948-4092967 | Msa0625100:intron | 45.0% | |
TCTGTCATTCTTGCAGGGTA+TGG | + | chr4_3:4093014-4093033 | Msa0625100:intron | 45.0% | |
! | AATGATGTCATGGGCTGTTC+TGG | + | chr4_3:4093098-4093117 | Msa0625100:CDS | 45.0% |
CTCAACCTGCTTTATGCAGT+AGG | - | chr4_3:4093130-4093149 | None:intergenic | 45.0% | |
! | TAAAGCAGGTTGAGTCTACG+AGG | + | chr4_3:4093136-4093155 | Msa0625100:intron | 45.0% |
TGCTGGATGGCACAATCATT+AGG | - | chr4_3:4093193-4093212 | None:intergenic | 45.0% | |
TGTGCCATCCAGCATTTAGT+TGG | + | chr4_3:4093199-4093218 | Msa0625100:intron | 45.0% | |
CAGCTTCTATGGAGCTTGAT+TGG | - | chr4_3:4093322-4093341 | None:intergenic | 45.0% | |
ATCAAGCTCCATAGAAGCTG+AGG | + | chr4_3:4093322-4093341 | Msa0625100:intron | 45.0% | |
GGCAATAAGTCAGTACCAAC+TGG | - | chr4_3:4093460-4093479 | None:intergenic | 45.0% | |
AGCTTCCCACCAGAAAAACT+TGG | - | chr4_3:4093669-4093688 | None:intergenic | 45.0% | |
!! | AAGTTTTTCTGGTGGGAAGC+TGG | + | chr4_3:4093668-4093687 | Msa0625100:CDS | 45.0% |
ATGGATATTGCACACGATCG+AGG | + | chr4_3:4093704-4093723 | Msa0625100:CDS | 45.0% | |
TGGTTGACAAGGTACATTCC+AGG | - | chr4_3:4094021-4094040 | None:intergenic | 45.0% | |
GATTCACTGGATGGTTGACA+AGG | - | chr4_3:4094032-4094051 | None:intergenic | 45.0% | |
GTCAACCATCCAGTGAATCT+TGG | + | chr4_3:4094033-4094052 | Msa0625100:CDS | 45.0% | |
! | GCCTTCTTTTAACCTCTGGA+TGG | + | chr4_3:4094505-4094524 | Msa0625100:CDS | 45.0% |
!!! | AAGCTCGCTATTTTTTGGGG+TGG | + | chr4_3:4094612-4094631 | Msa0625100:intron | 45.0% |
AAGTAAGGCAAGAACTGCAC+GGG | - | chr4_3:4095412-4095431 | None:intergenic | 45.0% | |
GAAGTAAGGCAAGAACTGCA+CGG | - | chr4_3:4095413-4095432 | None:intergenic | 45.0% | |
CTTTCCATACCTGCATGAAG+TGG | - | chr4_3:4096019-4096038 | None:intergenic | 45.0% | |
! | CATGCAGGTATGGAAAGTAC+TGG | + | chr4_3:4096022-4096041 | Msa0625100:intron | 45.0% |
ACTGGAAACTCTATTGCGAC+AGG | + | chr4_3:4096040-4096059 | Msa0625100:CDS | 45.0% | |
CTGGAAACTCTATTGCGACA+GGG | + | chr4_3:4096041-4096060 | Msa0625100:CDS | 45.0% | |
GTAAACATGGCAGCAAGTGA+AGG | - | chr4_3:4096122-4096141 | None:intergenic | 45.0% | |
CTTGACAGAATTCTCCTCCA+TGG | + | chr4_3:4096331-4096350 | Msa0625100:three_prime_UTR | 45.0% | |
TATATACGAGGACTCCATGG+AGG | - | chr4_3:4096348-4096367 | None:intergenic | 45.0% | |
AGTCGAAGACGCTAAGTCGT+AGG | + | chr4_3:4090121-4090140 | Msa0625100:five_prime_UTR | 50.0% | |
GGACCGTAAACAGTTTGACC+AGG | - | chr4_3:4090542-4090561 | None:intergenic | 50.0% | |
CGGTTACCGGTAGGAGAAAT+AGG | - | chr4_3:4090563-4090582 | None:intergenic | 50.0% | |
CTTATAGACAGGGCGGTTAC+CGG | - | chr4_3:4090576-4090595 | None:intergenic | 50.0% | |
CACAGACCTTATAGACAGGG+CGG | - | chr4_3:4090583-4090602 | None:intergenic | 50.0% | |
TTTGTCTTGTCTTGCCCCAC+AGG | - | chr4_3:4090780-4090799 | None:intergenic | 50.0% | |
CACATAGACACTGCCACACT+GGG | - | chr4_3:4091925-4091944 | None:intergenic | 50.0% | |
ACACATAGACACTGCCACAC+TGG | - | chr4_3:4091926-4091945 | None:intergenic | 50.0% | |
GTGTGGCAGTGTCTATGTGT+TGG | + | chr4_3:4091926-4091945 | Msa0625100:intron | 50.0% | |
ATGGAGCTCTATCCACGCAT+TGG | + | chr4_3:4093033-4093052 | Msa0625100:CDS | 50.0% | |
! | GATTGGTCACCTAACCACCA+AGG | - | chr4_3:4093305-4093324 | None:intergenic | 50.0% |
GTAGATGGCCTCAGCTTCTA+TGG | - | chr4_3:4093333-4093352 | None:intergenic | 50.0% | |
CTTTGGATACAGTGGCCAGT+TGG | + | chr4_3:4093442-4093461 | Msa0625100:intron | 50.0% | |
AGCTGGATACTGGAACACGA+TGG | + | chr4_3:4093685-4093704 | Msa0625100:CDS | 50.0% | |
GTGTCCCTAAATCTTGCAGC+TGG | + | chr4_3:4093943-4093962 | Msa0625100:intron | 50.0% | |
TTTGCTGGGGCTGTTTGGTT+TGG | + | chr4_3:4093974-4093993 | Msa0625100:CDS | 50.0% | |
! | TTGCTGGGGCTGTTTGGTTT+GGG | + | chr4_3:4093975-4093994 | Msa0625100:CDS | 50.0% |
ACAGGAATGGGATGGTACCT+GGG | - | chr4_3:4094061-4094080 | None:intergenic | 50.0% | |
AACAGGAATGGGATGGTACC+TGG | - | chr4_3:4094062-4094081 | None:intergenic | 50.0% | |
CAGCTCAAACAGGAATGGGA+TGG | - | chr4_3:4094069-4094088 | None:intergenic | 50.0% | |
GGCAAAGGCAAGAGTTTCGT+AGG | + | chr4_3:4094258-4094277 | Msa0625100:CDS | 50.0% | |
CTGGGGAAAAGCTCCATCAA+AGG | + | chr4_3:4094301-4094320 | Msa0625100:CDS | 50.0% | |
GCCTCATATACCACTGCTTC+CGG | + | chr4_3:4094468-4094487 | Msa0625100:CDS | 50.0% | |
CCTCATATACCACTGCTTCC+GGG | + | chr4_3:4094469-4094488 | Msa0625100:CDS | 50.0% | |
CTCATATACCACTGCTTCCG+GGG | + | chr4_3:4094470-4094489 | Msa0625100:CDS | 50.0% | |
!! | TTTTGTTTCCCCGGAAGCAG+TGG | - | chr4_3:4094481-4094500 | None:intergenic | 50.0% |
AAGGGATACGTACCATCCAG+AGG | - | chr4_3:4094520-4094539 | None:intergenic | 50.0% | |
! | CACTTTTCTGTGCTACCTGC+AGG | + | chr4_3:4095234-4095253 | Msa0625100:intron | 50.0% |
! | TTTTCTGTGCTACCTGCAGG+TGG | + | chr4_3:4095237-4095256 | Msa0625100:intron | 50.0% |
TTTCTGTGCTACCTGCAGGT+GGG | + | chr4_3:4095238-4095257 | Msa0625100:intron | 50.0% | |
ATGGCGGTGCATGTTTGGAT+CGG | + | chr4_3:4095630-4095649 | Msa0625100:intron | 50.0% | |
TGGTTGAAACAGTAGGCCGT+TGG | - | chr4_3:4095833-4095852 | None:intergenic | 50.0% | |
CATGGCAGCAAGTGAAGGAT+AGG | - | chr4_3:4096117-4096136 | None:intergenic | 50.0% | |
CGGTAACCGCCCTGTCTATA+AGG | + | chr4_3:4090574-4090593 | Msa0625100:CDS | 55.0% | |
ACATCTGTCGGTGACACGTG+TGG | + | chr4_3:4091355-4091374 | Msa0625100:intron | 55.0% | |
CATCTGTCGGTGACACGTGT+GGG | + | chr4_3:4091356-4091375 | Msa0625100:intron | 55.0% | |
CAGTTTGAACCTGGGGACCT+TGG | + | chr4_3:4093285-4093304 | Msa0625100:intron | 55.0% | |
TTTGAACCTGGGGACCTTGG+TGG | + | chr4_3:4093288-4093307 | Msa0625100:intron | 55.0% | |
TCTGGTGGGAAGCTGGATAC+TGG | + | chr4_3:4093675-4093694 | Msa0625100:CDS | 55.0% | |
GGGTGCCAAGATTCACTGGA+TGG | - | chr4_3:4094041-4094060 | None:intergenic | 55.0% | |
TCCAGTGAATCTTGGCACCC+AGG | + | chr4_3:4094041-4094060 | Msa0625100:CDS | 55.0% | |
ACCTGGGTGCCAAGATTCAC+TGG | - | chr4_3:4094045-4094064 | None:intergenic | 55.0% | |
CCCGGAAGCAGTGGTATATG+AGG | - | chr4_3:4094472-4094491 | None:intergenic | 55.0% | |
TTCTGTGCTACCTGCAGGTG+GGG | + | chr4_3:4095239-4095258 | Msa0625100:intron | 55.0% | |
GAGTCATGGCGGTGCATGTT+TGG | + | chr4_3:4095625-4095644 | Msa0625100:intron | 55.0% | |
TAGACAGGGCGGTTACCGGT+AGG | - | chr4_3:4090572-4090591 | None:intergenic | 60.0% | |
CACAGGCACAAGCACAGGGA+GGG | - | chr4_3:4090763-4090782 | None:intergenic | 60.0% | |
CTCCCTGTGCTTGTGCCTGT+GGG | + | chr4_3:4090762-4090781 | Msa0625100:intron | 60.0% | |
TCCCTGTGCTTGTGCCTGTG+GGG | + | chr4_3:4090763-4090782 | Msa0625100:intron | 60.0% | |
! | ACCTGGGGACCTTGGTGGTT+AGG | + | chr4_3:4093293-4093312 | Msa0625100:intron | 60.0% |
ACCTAACCACCAAGGTCCCC+AGG | - | chr4_3:4093297-4093316 | None:intergenic | 60.0% | |
ACGAGCTAATCCCCACCTGC+AGG | - | chr4_3:4095252-4095271 | None:intergenic | 60.0% | |
CCACAGGCACAAGCACAGGG+AGG | - | chr4_3:4090764-4090783 | None:intergenic | 65.0% | |
CCTCCCTGTGCTTGTGCCTG+TGG | + | chr4_3:4090761-4090780 | Msa0625100:intron | 65.0% | |
GCCCCACAGGCACAAGCACA+GGG | - | chr4_3:4090767-4090786 | None:intergenic | 65.0% | |
TGCCCCACAGGCACAAGCAC+AGG | - | chr4_3:4090768-4090787 | None:intergenic | 65.0% | |
CGGTGACACGTGTGGGACAC+TGG | + | chr4_3:4091363-4091382 | Msa0625100:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_3 | gene | 4090012 | 4096383 | 4090012 | ID=Msa0625100;Name=Msa0625100 |
chr4_3 | mRNA | 4090012 | 4096383 | 4090012 | ID=Msa0625100-mRNA-1;Parent=Msa0625100;Name=Msa0625100-mRNA-1;_AED=0.15;_eAED=0.15;_QI=152|1|1|1|1|1|13|288|438 |
chr4_3 | exon | 4090012 | 4090267 | 4090012 | ID=Msa0625100-mRNA-1:exon:993;Parent=Msa0625100-mRNA-1 |
chr4_3 | exon | 4090373 | 4090595 | 4090373 | ID=Msa0625100-mRNA-1:exon:994;Parent=Msa0625100-mRNA-1 |
chr4_3 | exon | 4091162 | 4091217 | 4091162 | ID=Msa0625100-mRNA-1:exon:995;Parent=Msa0625100-mRNA-1 |
chr4_3 | exon | 4092260 | 4092362 | 4092260 | ID=Msa0625100-mRNA-1:exon:996;Parent=Msa0625100-mRNA-1 |
chr4_3 | exon | 4092455 | 4092520 | 4092455 | ID=Msa0625100-mRNA-1:exon:997;Parent=Msa0625100-mRNA-1 |
chr4_3 | exon | 4093030 | 4093143 | 4093030 | ID=Msa0625100-mRNA-1:exon:998;Parent=Msa0625100-mRNA-1 |
chr4_3 | exon | 4093599 | 4093725 | 4093599 | ID=Msa0625100-mRNA-1:exon:999;Parent=Msa0625100-mRNA-1 |
chr4_3 | exon | 4093962 | 4094062 | 4093962 | ID=Msa0625100-mRNA-1:exon:1000;Parent=Msa0625100-mRNA-1 |
chr4_3 | exon | 4094197 | 4094322 | 4094197 | ID=Msa0625100-mRNA-1:exon:1001;Parent=Msa0625100-mRNA-1 |
chr4_3 | exon | 4094462 | 4094526 | 4094462 | ID=Msa0625100-mRNA-1:exon:1002;Parent=Msa0625100-mRNA-1 |
chr4_3 | exon | 4095256 | 4095337 | 4095256 | ID=Msa0625100-mRNA-1:exon:1003;Parent=Msa0625100-mRNA-1 |
chr4_3 | exon | 4095418 | 4095500 | 4095418 | ID=Msa0625100-mRNA-1:exon:1004;Parent=Msa0625100-mRNA-1 |
chr4_3 | exon | 4096029 | 4096383 | 4096029 | ID=Msa0625100-mRNA-1:exon:1005;Parent=Msa0625100-mRNA-1 |
chr4_3 | five_prime_UTR | 4090012 | 4090163 | 4090012 | ID=Msa0625100-mRNA-1:five_prime_utr;Parent=Msa0625100-mRNA-1 |
chr4_3 | CDS | 4090164 | 4090267 | 4090164 | ID=Msa0625100-mRNA-1:cds;Parent=Msa0625100-mRNA-1 |
chr4_3 | CDS | 4090373 | 4090595 | 4090373 | ID=Msa0625100-mRNA-1:cds;Parent=Msa0625100-mRNA-1 |
chr4_3 | CDS | 4091162 | 4091217 | 4091162 | ID=Msa0625100-mRNA-1:cds;Parent=Msa0625100-mRNA-1 |
chr4_3 | CDS | 4092260 | 4092362 | 4092260 | ID=Msa0625100-mRNA-1:cds;Parent=Msa0625100-mRNA-1 |
chr4_3 | CDS | 4092455 | 4092520 | 4092455 | ID=Msa0625100-mRNA-1:cds;Parent=Msa0625100-mRNA-1 |
chr4_3 | CDS | 4093030 | 4093143 | 4093030 | ID=Msa0625100-mRNA-1:cds;Parent=Msa0625100-mRNA-1 |
chr4_3 | CDS | 4093599 | 4093725 | 4093599 | ID=Msa0625100-mRNA-1:cds;Parent=Msa0625100-mRNA-1 |
chr4_3 | CDS | 4093962 | 4094062 | 4093962 | ID=Msa0625100-mRNA-1:cds;Parent=Msa0625100-mRNA-1 |
chr4_3 | CDS | 4094197 | 4094322 | 4094197 | ID=Msa0625100-mRNA-1:cds;Parent=Msa0625100-mRNA-1 |
chr4_3 | CDS | 4094462 | 4094526 | 4094462 | ID=Msa0625100-mRNA-1:cds;Parent=Msa0625100-mRNA-1 |
chr4_3 | CDS | 4095256 | 4095337 | 4095256 | ID=Msa0625100-mRNA-1:cds;Parent=Msa0625100-mRNA-1 |
chr4_3 | CDS | 4095418 | 4095500 | 4095418 | ID=Msa0625100-mRNA-1:cds;Parent=Msa0625100-mRNA-1 |
chr4_3 | CDS | 4096029 | 4096095 | 4096029 | ID=Msa0625100-mRNA-1:cds;Parent=Msa0625100-mRNA-1 |
chr4_3 | three_prime_UTR | 4096096 | 4096383 | 4096096 | ID=Msa0625100-mRNA-1:three_prime_utr;Parent=Msa0625100-mRNA-1 |
Gene Sequence |
Protein sequence |