AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0319500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0319500 MtrunA17_Chr2g0294131 96.847 222 7 0 1 222 1 222 1.58e-156 432
Msa0319500 MtrunA17_Chr4g0068671 53.252 246 86 7 1 222 1 241 2.51e-47 156
Msa0319500 MtrunA17_Chr1g0194401 45.455 154 81 3 51 203 29 180 9.26e-35 123
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0319500 AT3G17120.4 40.639 219 98 5 6 211 2 201 2.16e-32 117
Msa0319500 AT3G17120.2 40.639 219 98 5 6 211 2 201 2.16e-32 117
Msa0319500 AT3G17120.1 40.639 219 98 5 6 211 2 201 2.16e-32 117
Msa0319500 AT3G17120.5 40.639 219 98 5 6 211 2 201 2.16e-32 117
Msa0319500 AT3G17120.3 40.639 219 98 5 6 211 2 201 2.16e-32 117
Msa0319500 AT1G02380.1 37.445 227 126 9 1 216 1 222 1.10e-30 113
Msa0319500 AT4G01960.1 35.000 240 130 10 1 222 1 232 3.52e-22 91.3
Msa0319500 AT4G01960.2 35.000 240 130 10 1 222 1 232 3.52e-22 91.3
Msa0319500 AT4G01960.3 38.286 175 87 6 1 159 1 170 8.38e-19 81.3

Find 87 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGTTAATATACATAAAA+AGG 0.151621 2_4:+19251815 None:intergenic
TAATAAAAGGTGGGAGAATT+TGG 0.172456 2_4:-19253524 Msa0319500:five_prime_UTR
TATTTCAAGATTCGAAATTA+TGG 0.194087 2_4:+19254851 None:intergenic
TTATGTATATTAACCAATAT+TGG 0.201367 2_4:-19251810 Msa0319500:three_prime_UTR
TTCCTTTCCCTTCTCTAAAA+AGG 0.210267 2_4:-19254685 Msa0319500:intron
TATGTATATTAACCAATATT+GGG 0.260942 2_4:-19251809 Msa0319500:three_prime_UTR
TGGATTGGATTTGTGGTGTT+TGG 0.267273 2_4:-19253504 Msa0319500:five_prime_UTR
TGATGGTTTATGATCGATTA+AGG 0.267940 2_4:-19253646 Msa0319500:five_prime_UTR
AACAGAGGAGGGTTTGATTT+CGG 0.332157 2_4:-19252304 Msa0319500:CDS
GAGAATTTGGATTGGATTTG+TGG 0.338272 2_4:-19253511 Msa0319500:five_prime_UTR
GGATTGGATTTGTGGTGTTT+GGG 0.350289 2_4:-19253503 Msa0319500:five_prime_UTR
AGCAGATCATAAACTAATAA+AGG 0.356004 2_4:-19253187 Msa0319500:CDS
GGCGCATTTGAATCACTTGA+TGG 0.361497 2_4:+19252264 None:intergenic
ATGATTTCTAGTGGATTTGT+TGG 0.361904 2_4:-19253390 Msa0319500:CDS
TTTGTTGGAGGTTCTGTTAA+TGG 0.365710 2_4:-19253375 Msa0319500:CDS
TTACTGTTTCTTAATGTGAT+TGG 0.368692 2_4:-19251847 Msa0319500:three_prime_UTR
AGAGAGGGAGAGGGAAAAGA+AGG 0.369582 2_4:+19254761 None:intergenic
TATATGATGGGTTGAATTCA+AGG 0.376003 2_4:-19253589 Msa0319500:five_prime_UTR
TGTTGCAAGCAGTCATTTGA+TGG 0.376762 2_4:-19253663 Msa0319500:five_prime_UTR
TCTGTTCCGCCTGCTGATAC+AGG 0.386992 2_4:+19252321 None:intergenic
TTGTGGAGGTCGCGGAGGTT+TGG 0.387403 2_4:+19253227 None:intergenic
GCATATTCTTCAACCCTCAT+TGG 0.387913 2_4:-19254722 Msa0319500:five_prime_UTR
TGGATTTGTGGTGTTTGGGA+TGG 0.388270 2_4:-19253499 Msa0319500:exon
TACTTGATGGACTCCGACCC+TGG 0.400464 2_4:+19252243 None:intergenic
TTCTCACTGGCTTGCCAGAT+AGG 0.401627 2_4:-19251745 Msa0319500:three_prime_UTR
ATGATTGAAGGTGTCTGAAT+CGG 0.402591 2_4:-19253699 Msa0319500:intron
CGAATCTTGAAATATTCATA+AGG 0.407464 2_4:-19254842 Msa0319500:five_prime_UTR
TGCGTTGTTGTCTTGATTAA+CGG 0.410720 2_4:+19254876 None:intergenic
ATTGAAGTTGATATTGAAAG+TGG 0.415838 2_4:-19253450 Msa0319500:CDS
TTTGCAGGCATGTCATCAAC+TGG 0.421270 2_4:-19252375 Msa0319500:intron
CTTGAGTTATCTTCGATAAG+TGG 0.433854 2_4:+19253423 None:intergenic
AGATTTGATTGAGAAAAGAT+AGG 0.439239 2_4:+19254900 None:intergenic
ACCTCCACAAGGCCCGTCCT+TGG 0.439286 2_4:-19253214 Msa0319500:CDS
TGATTGAAGGTGTCTGAATC+GGG 0.442497 2_4:-19253698 Msa0319500:intron
TTTGTAGAGTAATAAAAGGT+GGG 0.456748 2_4:-19253533 Msa0319500:five_prime_UTR
GATTCATTCAAATAAGAACT+TGG 0.458751 2_4:+19253342 None:intergenic
GACGGGCCTTGTGGAGGTCG+CGG 0.460222 2_4:+19253219 None:intergenic
ATTTCTAGTGGATTTGTTGG+AGG 0.464052 2_4:-19253387 Msa0319500:CDS
TTCTGTTAATATGATGAAAG+TGG 0.466025 2_4:-19253304 Msa0319500:CDS
ATTGAGAAAAGATAGGAAAG+AGG 0.469936 2_4:+19254907 None:intergenic
TTTGGGATGGATCAAAGAAA+TGG 0.470867 2_4:-19253486 Msa0319500:exon
TCTGTTAATATGATGAAAGT+GGG 0.471299 2_4:-19253303 Msa0319500:CDS
TGATCTGCTGCGTCCAAGGA+CGG 0.481315 2_4:+19253201 None:intergenic
TCAAGTGATTCAAATGCGCC+AGG 0.485179 2_4:-19252261 Msa0319500:CDS
GAGAGGGAGAGGGAAAAGAA+GGG 0.498740 2_4:+19254762 None:intergenic
AAAGGTGGGAGAATTTGGAT+TGG 0.504466 2_4:-19253519 Msa0319500:five_prime_UTR
GCGTCCAAGGACGGGCCTTG+TGG 0.508349 2_4:+19253210 None:intergenic
GATCTGCTGCGTCCAAGGAC+GGG 0.514090 2_4:+19253202 None:intergenic
TTTATGATCTGCTGCGTCCA+AGG 0.515942 2_4:+19253197 None:intergenic
AGAATCTCTATGATTTCTAG+TGG 0.517852 2_4:-19253399 Msa0319500:CDS
ATTCAAATAAGAACTTGGCC+TGG 0.519471 2_4:+19253347 None:intergenic
CTGCTGATACAGGTGATCCT+TGG 0.520379 2_4:+19252331 None:intergenic
GAGTTTAAGATTTGTTCAAA+AGG 0.522254 2_4:+19254814 None:intergenic
ATGTATATTAACCAATATTG+GGG 0.531280 2_4:-19251808 Msa0319500:three_prime_UTR
CAAGGATCACCTGTATCAGC+AGG 0.531822 2_4:-19252330 Msa0319500:CDS
CAAGAGTGGTAATTCTGCTA+TGG 0.535692 2_4:+19251771 None:intergenic
AGCTCAGTGTCAAGTTTCCA+AGG 0.545861 2_4:-19252348 Msa0319500:CDS
TCCAAGGACGGGCCTTGTGG+AGG 0.547784 2_4:+19253213 None:intergenic
AAGATAGGAAAGAGGTGTGA+CGG 0.553834 2_4:+19254915 None:intergenic
TGTATCTATGACATTACAGT+TGG 0.557830 2_4:+19254943 None:intergenic
ATCAGCAGGCGGAACAGAGG+AGG 0.558789 2_4:-19252316 Msa0319500:CDS
TTGTGTATTAAAATATGAGA+TGG 0.561705 2_4:-19251925 Msa0319500:three_prime_UTR
TTAGTACATCGTATTAATTG+AGG 0.561939 2_4:-19253621 Msa0319500:five_prime_UTR
GTTCTGTTAATGGCGAAGCC+AGG 0.564549 2_4:-19253365 Msa0319500:CDS
TATGATGAAAGTGGGGAACA+AGG 0.571860 2_4:-19253295 Msa0319500:CDS
TTGCGATGTTGAAGCGTGCA+AGG 0.575727 2_4:-19253152 Msa0319500:CDS
GTACATCGTATTAATTGAGG+AGG 0.592449 2_4:-19253618 Msa0319500:five_prime_UTR
TTCATTGTGATAATCTGCCA+AGG 0.593747 2_4:-19253027 Msa0319500:intron
GGATGGATCAAAGAAATGGA+AGG 0.596860 2_4:-19253482 Msa0319500:CDS
TGATTCAAATGCGCCAGGGT+CGG 0.597497 2_4:-19252256 Msa0319500:CDS
GAATTCAAGGATTGAGTCGG+TGG 0.604049 2_4:-19253576 Msa0319500:five_prime_UTR
ATCTAATAGCAGCAGCATTG+TGG 0.611367 2_4:-19253073 Msa0319500:CDS
GGGCCTTGTGGAGGTCGCGG+AGG 0.611484 2_4:+19253222 None:intergenic
AAACCTCCGCGACCTCCACA+AGG 0.611809 2_4:-19253225 Msa0319500:CDS
AATCACTTGATGGATTGAGT+TGG 0.614440 2_4:+19252274 None:intergenic
CACTTATCGAAGATAACTCA+AGG 0.618096 2_4:-19253422 Msa0319500:CDS
TGTATATTAACCAATATTGG+GGG 0.618643 2_4:-19251807 Msa0319500:three_prime_UTR
CATGGTCGTTGACATTGAGA+TGG 0.619878 2_4:-19251683 Msa0319500:three_prime_UTR
ATGCTGCTGCTATTAGATGA+CGG 0.623369 2_4:+19253078 None:intergenic
GTTGAATTCAAGGATTGAGT+CGG 0.628641 2_4:-19253579 Msa0319500:five_prime_UTR
TCAGCAGGCGGAACAGAGGA+GGG 0.635853 2_4:-19252315 Msa0319500:CDS
GATGGATCAAAGAAATGGAA+GGG 0.642676 2_4:-19253481 Msa0319500:CDS
TGTATCAGCAGGCGGAACAG+AGG 0.645262 2_4:-19252319 Msa0319500:CDS
GTATATTAACCAATATTGGG+GGG 0.649906 2_4:-19251806 Msa0319500:three_prime_UTR
CTGTTAATATGATGAAAGTG+GGG 0.653694 2_4:-19253302 Msa0319500:CDS
CAAGTGATTCAAATGCGCCA+GGG 0.667412 2_4:-19252260 Msa0319500:CDS
GGATCACCTGTATCAGCAGG+CGG 0.687976 2_4:-19252327 Msa0319500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTAATTTTTTTTTCTG+TGG - chr2_4:19252198-19252217 Msa0319500:intron 10.0%
!!! TTTTTATTATTTGTTTTTTC+TGG - chr2_4:19252394-19252413 Msa0319500:intron 10.0%
!!! TTTTATTATTTGTTTTTTCT+GGG - chr2_4:19252395-19252414 Msa0319500:intron 10.0%
!! AAACAAATTACTAAAAAAAA+TGG + chr2_4:19252754-19252773 None:intergenic 10.0%
!! TTGGTTAATATACATAAAAA+GGG + chr2_4:19254768-19254787 None:intergenic 15.0%
!! ATTGGTTAATATACATAAAA+AGG + chr2_4:19254769-19254788 None:intergenic 15.0%
!! TTATGTATATTAACCAATAT+TGG - chr2_4:19254771-19254790 Msa0319500:five_prime_UTR 15.0%
!! TATGTATATTAACCAATATT+GGG - chr2_4:19254772-19254791 Msa0319500:five_prime_UTR 15.0%
!! TATTTCAAGATTCGAAATTA+TGG + chr2_4:19251733-19251752 None:intergenic 20.0%
!!! TTTGTCTTTTTTCATTTTCA+TGG - chr2_4:19251944-19251963 Msa0319500:three_prime_UTR 20.0%
!!! ATTAAATTTTTTCCTTCTTC+TGG - chr2_4:19252010-19252029 Msa0319500:CDS 20.0%
!!! TTAAATTTTTTCCTTCTTCT+GGG - chr2_4:19252011-19252030 Msa0319500:CDS 20.0%
!!! TTGTCTTTTTTCATTTTCAT+GGG - chr2_4:19251945-19251964 Msa0319500:three_prime_UTR 20.0%
!!! TTTTGTCACTATTTGAAAAT+TGG - chr2_4:19252574-19252593 Msa0319500:intron 20.0%
!! TTTGTCACTATTTGAAAATT+GGG - chr2_4:19252575-19252594 Msa0319500:intron 20.0%
!!! ATGATAATTTTCCCTTTAAT+GGG + chr2_4:19252669-19252688 None:intergenic 20.0%
!!! TATGATAATTTTCCCTTTAA+TGG + chr2_4:19252670-19252689 None:intergenic 20.0%
!!! ATTTGTTTTTAGAGAACTAA+TGG - chr2_4:19252766-19252785 Msa0319500:intron 20.0%
!!! TGTTTTTGTAGAGTAATAAA+AGG - chr2_4:19253044-19253063 Msa0319500:CDS 20.0%
!!! AATTTTTTGTATGTTTGGAT+TGG + chr2_4:19254135-19254154 None:intergenic 20.0%
!! ATCCAAACATACAAAAAATT+TGG - chr2_4:19254135-19254154 Msa0319500:intron 20.0%
!!! AACCAAATTTTTTGTATGTT+TGG + chr2_4:19254140-19254159 None:intergenic 20.0%
!!! ATATTTTAATACACAAGTGA+TGG + chr2_4:19254652-19254671 None:intergenic 20.0%
!! TTGTGTATTAAAATATGAGA+TGG - chr2_4:19254656-19254675 Msa0319500:intron 20.0%
!! ATGTATATTAACCAATATTG+GGG - chr2_4:19254773-19254792 Msa0319500:five_prime_UTR 20.0%
! AGATTTGATTGAGAAAAGAT+AGG + chr2_4:19251684-19251703 None:intergenic 25.0%
! CGAATCTTGAAATATTCATA+AGG - chr2_4:19251739-19251758 Msa0319500:three_prime_UTR 25.0%
!! GAGTTTAAGATTTGTTCAAA+AGG + chr2_4:19251770-19251789 None:intergenic 25.0%
! TCTAAAAATTGATCCAATGA+GGG + chr2_4:19251875-19251894 None:intergenic 25.0%
!!! GTAATTACCTTTTTAGAGAA+GGG + chr2_4:19251906-19251925 None:intergenic 25.0%
!!! AGTAATTACCTTTTTAGAGA+AGG + chr2_4:19251907-19251926 None:intergenic 25.0%
!!! TAAATTTTTTCCTTCTTCTG+GGG - chr2_4:19252012-19252031 Msa0319500:CDS 25.0%
!!! GTTGTCTTTTTTCATTTTCA+TGG - chr2_4:19252327-19252346 Msa0319500:CDS 25.0%
! TTGTCACTATTTGAAAATTG+GGG - chr2_4:19252576-19252595 Msa0319500:intron 25.0%
! AAGCTTAAAGTTATGTCATT+TGG - chr2_4:19252608-19252627 Msa0319500:intron 25.0%
! CAAAGATAAAACCCATTAAA+GGG - chr2_4:19252655-19252674 Msa0319500:intron 25.0%
! AAATGGTATAATCCTTTGAA+AGG + chr2_4:19252737-19252756 None:intergenic 25.0%
!!! TAGTAAATAGAGTTTTAGAG+AGG - chr2_4:19252792-19252811 Msa0319500:intron 25.0%
! TTAGTACATCGTATTAATTG+AGG - chr2_4:19252960-19252979 Msa0319500:intron 25.0%
!!! AGGAGGTTTTTTTATATGAT+GGG - chr2_4:19252980-19252999 Msa0319500:intron 25.0%
!! TTTTGTAGAGTAATAAAAGG+TGG - chr2_4:19253047-19253066 Msa0319500:CDS 25.0%
! TTTGTAGAGTAATAAAAGGT+GGG - chr2_4:19253048-19253067 Msa0319500:CDS 25.0%
!!! ATTGAAGTTGATATTGAAAG+TGG - chr2_4:19253131-19253150 Msa0319500:CDS 25.0%
! GATTCATTCAAATAAGAACT+TGG + chr2_4:19253242-19253261 None:intergenic 25.0%
! TTCTGTTAATATGATGAAAG+TGG - chr2_4:19253277-19253296 Msa0319500:CDS 25.0%
! TCTGTTAATATGATGAAAGT+GGG - chr2_4:19253278-19253297 Msa0319500:CDS 25.0%
! AGCAGATCATAAACTAATAA+AGG - chr2_4:19253394-19253413 Msa0319500:CDS 25.0%
!! AATTTTATATGGCCTAATAG+AGG + chr2_4:19253745-19253764 None:intergenic 25.0%
! GTTACTATCAAATTTCATCA+TGG - chr2_4:19253892-19253911 Msa0319500:intron 25.0%
! CAACCATTAGATTAATCAAA+AGG + chr2_4:19254449-19254468 None:intergenic 25.0%
!! TTACTGTTTCTTAATGTGAT+TGG - chr2_4:19254734-19254753 Msa0319500:five_prime_UTR 25.0%
! TGTATATTAACCAATATTGG+GGG - chr2_4:19254774-19254793 Msa0319500:five_prime_UTR 25.0%
!!! CTTTTGAAGCTAAAAAACAA+TGG - chr2_4:19254929-19254948 Msa0319500:five_prime_UTR 25.0%
TGTATCTATGACATTACAGT+TGG + chr2_4:19251641-19251660 None:intergenic 30.0%
ATTGAGAAAAGATAGGAAAG+AGG + chr2_4:19251677-19251696 None:intergenic 30.0%
! CTCTAAAAATTGATCCAATG+AGG + chr2_4:19251876-19251895 None:intergenic 30.0%
AACCCTCAAATGATGATAAT+GGG + chr2_4:19251973-19251992 None:intergenic 30.0%
TAACCCTCAAATGATGATAA+TGG + chr2_4:19251974-19251993 None:intergenic 30.0%
! TTGCCTTTTTCCATTTTCAT+GGG - chr2_4:19252121-19252140 Msa0319500:intron 30.0%
TACCCCAAATGAAGATAATT+GGG + chr2_4:19252149-19252168 None:intergenic 30.0%
ATACCCCAAATGAAGATAAT+TGG + chr2_4:19252150-19252169 None:intergenic 30.0%
! TATTTGAAAATTGGGGCTTT+TGG - chr2_4:19252583-19252602 Msa0319500:intron 30.0%
! ATTTGAAAATTGGGGCTTTT+GGG - chr2_4:19252584-19252603 Msa0319500:intron 30.0%
!!! TTAATGGGTTTTATCTTTGG+AGG + chr2_4:19252654-19252673 None:intergenic 30.0%
!!! CCTTTAATGGGTTTTATCTT+TGG + chr2_4:19252657-19252676 None:intergenic 30.0%
CCAAAGATAAAACCCATTAA+AGG - chr2_4:19252654-19252673 Msa0319500:intron 30.0%
!!! TGTTTTTAGAGAACTAATGG+AGG - chr2_4:19252769-19252788 Msa0319500:intron 30.0%
TGATGGTTTATGATCGATTA+AGG - chr2_4:19252935-19252954 Msa0319500:intron 30.0%
!!! GAGGAGGTTTTTTTATATGA+TGG - chr2_4:19252979-19252998 Msa0319500:intron 30.0%
!! TATATGATGGGTTGAATTCA+AGG - chr2_4:19252992-19253011 Msa0319500:intron 30.0%
TAATAAAAGGTGGGAGAATT+TGG - chr2_4:19253057-19253076 Msa0319500:CDS 30.0%
! AGAATCTCTATGATTTCTAG+TGG - chr2_4:19253182-19253201 Msa0319500:CDS 30.0%
!! ATGATTTCTAGTGGATTTGT+TGG - chr2_4:19253191-19253210 Msa0319500:CDS 30.0%
CTGTTAATATGATGAAAGTG+GGG - chr2_4:19253279-19253298 Msa0319500:CDS 30.0%
!! TTTTTCCGTTTTTCTTTTGC+TGG + chr2_4:19253314-19253333 None:intergenic 30.0%
AGCAAAAGAAAAACGGAAAA+AGG - chr2_4:19253313-19253332 Msa0319500:CDS 30.0%
! TTGTACCACAAATTTTACCT+TGG + chr2_4:19253574-19253593 None:intergenic 30.0%
TAATCTTCTTCACAACATGT+AGG - chr2_4:19253634-19253653 Msa0319500:five_prime_UTR 30.0%
GAAACAGATTAGATATGCAA+TGG + chr2_4:19253723-19253742 None:intergenic 30.0%
TCTAATCTGTTTCCTCTATT+AGG - chr2_4:19253730-19253749 Msa0319500:intron 30.0%
AGAAATACCAAAGAAACAGT+TGG + chr2_4:19253923-19253942 None:intergenic 30.0%
! CTGTTTCTTTGGTATTTCTT+TGG - chr2_4:19253924-19253943 Msa0319500:intron 30.0%
!!! AGTTTTGTTGCATTCATGAT+TGG - chr2_4:19253950-19253969 Msa0319500:intron 30.0%
!!! GTTTGTTTTTGTGCAATGTT+TGG - chr2_4:19253996-19254015 Msa0319500:intron 30.0%
TTCTATCATAAGCTACACTT+TGG + chr2_4:19254074-19254093 None:intergenic 30.0%
! TAATTAGAAGTTCCTTTTGC+AGG - chr2_4:19254191-19254210 Msa0319500:intron 30.0%
! TGTGTTTTCAACTTACTTGA+TGG + chr2_4:19254354-19254373 None:intergenic 30.0%
!! TCGCCTTTTGATTAATCTAA+TGG - chr2_4:19254443-19254462 Msa0319500:intron 30.0%
! AATGGTTGAAATTTTGCAAG+AGG - chr2_4:19254461-19254480 Msa0319500:intron 30.0%
! ATGGTTGAAATTTTGCAAGA+GGG - chr2_4:19254462-19254481 Msa0319500:intron 30.0%
GTATATTAACCAATATTGGG+GGG - chr2_4:19254775-19254794 Msa0319500:five_prime_UTR 30.0%
TGAGAAGGTAAAAAGTAACA+GGG + chr2_4:19254862-19254881 None:intergenic 30.0%
TGCGTTGTTGTCTTGATTAA+CGG + chr2_4:19251708-19251727 None:intergenic 35.0%
! TTCCTTTCCCTTCTCTAAAA+AGG - chr2_4:19251896-19251915 Msa0319500:three_prime_UTR 35.0%
!! TACCTTTTTAGAGAAGGGAA+AGG + chr2_4:19251901-19251920 None:intergenic 35.0%
TTGCCCATTATCATCATTTG+AGG - chr2_4:19251967-19251986 Msa0319500:three_prime_UTR 35.0%
TGCCCATTATCATCATTTGA+GGG - chr2_4:19251968-19251987 Msa0319500:three_prime_UTR 35.0%
TATCATCATTTGAGGGTTAG+AGG - chr2_4:19251975-19251994 Msa0319500:exon 35.0%
AATTATTCAACCCCAGAAGA+AGG + chr2_4:19252025-19252044 None:intergenic 35.0%
! GTTGCCTTTTTCCATTTTCA+TGG - chr2_4:19252120-19252139 Msa0319500:intron 35.0%
GTGCCCAATTATCTTCATTT+GGG - chr2_4:19252143-19252162 Msa0319500:intron 35.0%
TGCCCAATTATCTTCATTTG+GGG - chr2_4:19252144-19252163 Msa0319500:intron 35.0%
!! ATTTGGGGTATTGACTTTGA+GGG - chr2_4:19252159-19252178 Msa0319500:intron 35.0%
!! TACCCCCAAATTTTGATGAT+GGG + chr2_4:19252356-19252375 None:intergenic 35.0%
!! ATACCCCCAAATTTTGATGA+TGG + chr2_4:19252357-19252376 None:intergenic 35.0%
!! AATTTGGGGGTATTGACTTT+AGG - chr2_4:19252364-19252383 Msa0319500:CDS 35.0%
!! ATTTGGGGGTATTGACTTTA+GGG - chr2_4:19252365-19252384 Msa0319500:CDS 35.0%
CAAAGCAATGCAGACATAAA+TGG + chr2_4:19252489-19252508 None:intergenic 35.0%
TCTTTGTTCCTTTCTTCTCA+AGG - chr2_4:19252534-19252553 Msa0319500:intron 35.0%
CAAAAAGTCCTTGAGAAGAA+AGG + chr2_4:19252545-19252564 None:intergenic 35.0%
!! ATGATTGAAGGTGTCTGAAT+CGG - chr2_4:19252882-19252901 Msa0319500:intron 35.0%
GTACATCGTATTAATTGAGG+AGG - chr2_4:19252963-19252982 Msa0319500:intron 35.0%
GTTGAATTCAAGGATTGAGT+CGG - chr2_4:19253002-19253021 Msa0319500:intron 35.0%
! GAGAATTTGGATTGGATTTG+TGG - chr2_4:19253070-19253089 Msa0319500:CDS 35.0%
! TTTGGGATGGATCAAAGAAA+TGG - chr2_4:19253095-19253114 Msa0319500:CDS 35.0%
GATGGATCAAAGAAATGGAA+GGG - chr2_4:19253100-19253119 Msa0319500:CDS 35.0%
CTTGAGTTATCTTCGATAAG+TGG + chr2_4:19253161-19253180 None:intergenic 35.0%
CACTTATCGAAGATAACTCA+AGG - chr2_4:19253159-19253178 Msa0319500:CDS 35.0%
!! ATTTCTAGTGGATTTGTTGG+AGG - chr2_4:19253194-19253213 Msa0319500:CDS 35.0%
TTTGTTGGAGGTTCTGTTAA+TGG - chr2_4:19253206-19253225 Msa0319500:CDS 35.0%
ATTCAAATAAGAACTTGGCC+TGG + chr2_4:19253237-19253256 None:intergenic 35.0%
TTCATTGTGATAATCTGCCA+AGG - chr2_4:19253554-19253573 Msa0319500:five_prime_UTR 35.0%
ATCTGCCAAGGTAAAATTTG+TGG - chr2_4:19253566-19253585 Msa0319500:five_prime_UTR 35.0%
TATGCAATGGTCACAAAACA+AGG + chr2_4:19253710-19253729 None:intergenic 35.0%
TACACGAGAAATCATAGGTT+TGG - chr2_4:19253812-19253831 Msa0319500:intron 35.0%
CAAAAACAAACAATACCGCA+GGG + chr2_4:19253987-19254006 None:intergenic 35.0%
ACAAAAACAAACAATACCGC+AGG + chr2_4:19253988-19254007 None:intergenic 35.0%
TTGTGCAATGTTTGGATTGA+CGG - chr2_4:19254004-19254023 Msa0319500:intron 35.0%
AGCTTATGATAGAATCACGA+TGG - chr2_4:19254080-19254099 Msa0319500:intron 35.0%
!! AATCACTTGATGGATTGAGT+TGG + chr2_4:19254310-19254329 None:intergenic 35.0%
GATCAATATCGCAACACTAA+GGG + chr2_4:19254396-19254415 None:intergenic 35.0%
! TGGTTGAAATTTTGCAAGAG+GGG - chr2_4:19254463-19254482 Msa0319500:intron 35.0%
! ATTTTGCAAGAGGGGAATAT+AGG - chr2_4:19254471-19254490 Msa0319500:intron 35.0%
CTGAGAAGGTAAAAAGTAAC+AGG + chr2_4:19254863-19254882 None:intergenic 35.0%
! AAGATAGGAAAGAGGTGTGA+CGG + chr2_4:19251669-19251688 None:intergenic 40.0%
GCATATTCTTCAACCCTCAT+TGG - chr2_4:19251859-19251878 Msa0319500:three_prime_UTR 40.0%
GCACCCATGAAAATGGAAAA+AGG + chr2_4:19252127-19252146 None:intergenic 40.0%
TAATTGGGCACCCATGAAAA+TGG + chr2_4:19252134-19252153 None:intergenic 40.0%
GGTGCCCAATTATCTTCATT+TGG - chr2_4:19252142-19252161 Msa0319500:intron 40.0%
!! CATTTGGGGTATTGACTTTG+AGG - chr2_4:19252158-19252177 Msa0319500:intron 40.0%
GGTGCCCATCATCAAAATTT+GGG - chr2_4:19252349-19252368 Msa0319500:CDS 40.0%
GTGCCCATCATCAAAATTTG+GGG - chr2_4:19252350-19252369 Msa0319500:CDS 40.0%
TGCCCATCATCAAAATTTGG+GGG - chr2_4:19252351-19252370 Msa0319500:CDS 40.0%
!!! TTCGTCACTTTTTGTGATGC+AGG - chr2_4:19252705-19252724 Msa0319500:intron 40.0%
TGCAGGTTTAGTCCTTTCAA+AGG - chr2_4:19252722-19252741 Msa0319500:intron 40.0%
! GAGAGGAAGAGAAGTAGTTT+TGG - chr2_4:19252809-19252828 Msa0319500:intron 40.0%
!!! AGGAAGAGAAGTAGTTTTGG+AGG - chr2_4:19252812-19252831 Msa0319500:intron 40.0%
TACTCTGTATCTGTCTAACG+TGG - chr2_4:19252852-19252871 Msa0319500:intron 40.0%
CGTGGATGGTTTATGATTGA+AGG - chr2_4:19252870-19252889 Msa0319500:intron 40.0%
!! TGATTGAAGGTGTCTGAATC+GGG - chr2_4:19252883-19252902 Msa0319500:intron 40.0%
TGTTGCAAGCAGTCATTTGA+TGG - chr2_4:19252918-19252937 Msa0319500:intron 40.0%
AAAGGTGGGAGAATTTGGAT+TGG - chr2_4:19253062-19253081 Msa0319500:CDS 40.0%
! TGGATTGGATTTGTGGTGTT+TGG - chr2_4:19253077-19253096 Msa0319500:CDS 40.0%
GGATTGGATTTGTGGTGTTT+GGG - chr2_4:19253078-19253097 Msa0319500:CDS 40.0%
GGATGGATCAAAGAAATGGA+AGG - chr2_4:19253099-19253118 Msa0319500:CDS 40.0%
TATGATGAAAGTGGGGAACA+AGG - chr2_4:19253286-19253305 Msa0319500:CDS 40.0%
AGGCTCCAGCAAAAGAAAAA+CGG - chr2_4:19253306-19253325 Msa0319500:CDS 40.0%
! AGAAAAACGGAAAAAGGCGT+CGG - chr2_4:19253319-19253338 Msa0319500:CDS 40.0%
ATGCTGCTGCTATTAGATGA+CGG + chr2_4:19253506-19253525 None:intergenic 40.0%
ATCTAATAGCAGCAGCATTG+TGG - chr2_4:19253508-19253527 Msa0319500:five_prime_UTR 40.0%
GTGAGTACACGAGAAATCAT+AGG - chr2_4:19253807-19253826 Msa0319500:intron 40.0%
! GGTTTGTCCAACTGTTTCTT+TGG - chr2_4:19253913-19253932 Msa0319500:intron 40.0%
TTGGATTAAACTACTCCCTG+CGG - chr2_4:19253969-19253988 Msa0319500:intron 40.0%
CGGAGAGTTTAGAGATATCA+CGG - chr2_4:19254024-19254043 Msa0319500:intron 40.0%
AGAGTTTAGAGATATCACGG+CGG - chr2_4:19254027-19254046 Msa0319500:intron 40.0%
! AACAGAGGAGGGTTTGATTT+CGG - chr2_4:19254277-19254296 Msa0319500:intron 40.0%
GGATCAATATCGCAACACTA+AGG + chr2_4:19254397-19254416 None:intergenic 40.0%
! TATCTCGTAGTGGGATTCAA+AGG + chr2_4:19254418-19254437 None:intergenic 40.0%
! ACGTGAAATTTTCCGCTTGA+TGG - chr2_4:19254528-19254547 Msa0319500:intron 40.0%
ACAAAACTGCAACCATCAAG+CGG + chr2_4:19254543-19254562 None:intergenic 40.0%
!! ATGGTTGCAGTTTTGTACAG+CGG - chr2_4:19254547-19254566 Msa0319500:intron 40.0%
CAGATTTGCACGAAAAACTG+AGG - chr2_4:19254580-19254599 Msa0319500:intron 40.0%
TTTAACTCACCCCCCAATAT+TGG + chr2_4:19254787-19254806 None:intergenic 40.0%
CAAGAGTGGTAATTCTGCTA+TGG + chr2_4:19254813-19254832 None:intergenic 40.0%
!!! ACCACTCTTGTTTTTCTCAC+TGG - chr2_4:19254823-19254842 Msa0319500:five_prime_UTR 40.0%
AAAAAGTAACAGGGCCTATC+TGG + chr2_4:19254853-19254872 None:intergenic 40.0%
GCAACAAAAAGTTGCTGAGA+AGG + chr2_4:19254877-19254896 None:intergenic 40.0%
! CAGCAACTTTTTGTTGCTCA+TGG - chr2_4:19254880-19254899 Msa0319500:five_prime_UTR 40.0%
GGGTGCCCATCATCAAAATT+TGG - chr2_4:19252348-19252367 Msa0319500:CDS 45.0%
CTGTATCTGTCTAACGTGGA+TGG - chr2_4:19252856-19252875 Msa0319500:intron 45.0%
GAATTCAAGGATTGAGTCGG+TGG - chr2_4:19253005-19253024 Msa0319500:intron 45.0%
TGGATTTGTGGTGTTTGGGA+TGG - chr2_4:19253082-19253101 Msa0319500:CDS 45.0%
!! GAAAAACGGAAAAAGGCGTC+GGG - chr2_4:19253320-19253339 Msa0319500:CDS 45.0%
!! GAAAAAGGCGTCGGGTAAAA+AGG - chr2_4:19253328-19253347 Msa0319500:CDS 45.0%
TTTATGATCTGCTGCGTCCA+AGG + chr2_4:19253387-19253406 None:intergenic 45.0%
!! GTTTGGATTGGCAGCAAGTT+TGG + chr2_4:19254123-19254142 None:intergenic 45.0%
!! GTTGATGACATGCCTGCAAA+AGG + chr2_4:19254206-19254225 None:intergenic 45.0%
TTTGCAGGCATGTCATCAAC+TGG - chr2_4:19254206-19254225 Msa0319500:intron 45.0%
AGCTCAGTGTCAAGTTTCCA+AGG - chr2_4:19254233-19254252 Msa0319500:intron 45.0%
GGCGCATTTGAATCACTTGA+TGG + chr2_4:19254320-19254339 None:intergenic 45.0%
TCAAGTGATTCAAATGCGCC+AGG - chr2_4:19254320-19254339 Msa0319500:intron 45.0%
CAAGTGATTCAAATGCGCCA+GGG - chr2_4:19254321-19254340 Msa0319500:intron 45.0%
! GCGAAGTGTTATCTCGTAGT+GGG + chr2_4:19254427-19254446 None:intergenic 45.0%
!! TGGTTGCAGTTTTGTACAGC+GGG - chr2_4:19254548-19254567 Msa0319500:intron 45.0%
!! AGTTTTGTACAGCGGGTATC+AGG - chr2_4:19254555-19254574 Msa0319500:intron 45.0%
TTGCACGAAAAACTGAGGAC+AGG - chr2_4:19254585-19254604 Msa0319500:intron 45.0%
GAAAAACTGAGGACAGGTTG+AGG - chr2_4:19254591-19254610 Msa0319500:intron 45.0%
GCCAGTGAGAAAAACAAGAG+TGG + chr2_4:19254827-19254846 None:intergenic 45.0%
CATGGTCGTTGACATTGAGA+TGG - chr2_4:19254898-19254917 Msa0319500:five_prime_UTR 45.0%
!!! ATAAATATGAAAATTTTATA+TGG + chr2_4:19253756-19253775 None:intergenic 5.0%
GAGAGGGAGAGGGAAAAGAA+GGG + chr2_4:19251822-19251841 None:intergenic 50.0%
AGAGAGGGAGAGGGAAAAGA+AGG + chr2_4:19251823-19251842 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG + chr2_4:19251838-19251857 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr2_4:19251837-19251856 None:intergenic 50.0%
GTTCTGTTAATGGCGAAGCC+AGG - chr2_4:19253216-19253235 Msa0319500:CDS 50.0%
TTGCGATGTTGAAGCGTGCA+AGG - chr2_4:19253429-19253448 Msa0319500:CDS 50.0%
CTGCTGATACAGGTGATCCT+TGG + chr2_4:19254253-19254272 None:intergenic 50.0%
CAAGGATCACCTGTATCAGC+AGG - chr2_4:19254251-19254270 Msa0319500:intron 50.0%
TGATTCAAATGCGCCAGGGT+CGG - chr2_4:19254325-19254344 Msa0319500:intron 50.0%
! GGCGAAGTGTTATCTCGTAG+TGG + chr2_4:19254428-19254447 None:intergenic 50.0%
!! TTCTCACTGGCTTGCCAGAT+AGG - chr2_4:19254836-19254855 Msa0319500:five_prime_UTR 50.0%
GAGAGAGAGAGAGAGGGAGA+GGG + chr2_4:19251832-19251851 None:intergenic 55.0%
AGAGAGAGAGAGAGAGGGAG+AGG + chr2_4:19251833-19251852 None:intergenic 55.0%
TGATCTGCTGCGTCCAAGGA+CGG + chr2_4:19253383-19253402 None:intergenic 55.0%
GGATCACCTGTATCAGCAGG+CGG - chr2_4:19254254-19254273 Msa0319500:intron 55.0%
TCTGTTCCGCCTGCTGATAC+AGG + chr2_4:19254263-19254282 None:intergenic 55.0%
TGTATCAGCAGGCGGAACAG+AGG - chr2_4:19254262-19254281 Msa0319500:intron 55.0%
!! TACTTGATGGACTCCGACCC+TGG + chr2_4:19254341-19254360 None:intergenic 55.0%
TTGTGGAGGTCGCGGAGGTT+TGG + chr2_4:19253357-19253376 None:intergenic 60.0%
AAACCTCCGCGACCTCCACA+AGG - chr2_4:19253356-19253375 Msa0319500:CDS 60.0%
GATCTGCTGCGTCCAAGGAC+GGG + chr2_4:19253382-19253401 None:intergenic 60.0%
ATCAGCAGGCGGAACAGAGG+AGG - chr2_4:19254265-19254284 Msa0319500:intron 60.0%
TCAGCAGGCGGAACAGAGGA+GGG - chr2_4:19254266-19254285 Msa0319500:intron 60.0%
ACCTCCACAAGGCCCGTCCT+TGG - chr2_4:19253367-19253386 Msa0319500:CDS 65.0%
! TCCAAGGACGGGCCTTGTGG+AGG + chr2_4:19253371-19253390 None:intergenic 65.0%
! GACGGGCCTTGTGGAGGTCG+CGG + chr2_4:19253365-19253384 None:intergenic 70.0%
GCGTCCAAGGACGGGCCTTG+TGG + chr2_4:19253374-19253393 None:intergenic 70.0%
! GGGCCTTGTGGAGGTCGCGG+AGG + chr2_4:19253362-19253381 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 19251626 19254977 19251626 ID=Msa0319500;Name=Msa0319500
chr2_4 mRNA 19251626 19254977 19251626 ID=Msa0319500-mRNA-1;Parent=Msa0319500;Name=Msa0319500-mRNA-1;_AED=0.12;_eAED=0.12;_QI=501|1|1|1|0.66|0.5|4|366|224
chr2_4 exon 19251626 19252046 19251626 ID=Msa0319500-mRNA-1:exon:7132;Parent=Msa0319500-mRNA-1
chr2_4 exon 19252246 19252390 19252246 ID=Msa0319500-mRNA-1:exon:7131;Parent=Msa0319500-mRNA-1
chr2_4 exon 19253028 19253711 19253028 ID=Msa0319500-mRNA-1:exon:7130;Parent=Msa0319500-mRNA-1
chr2_4 exon 19254686 19254977 19254686 ID=Msa0319500-mRNA-1:exon:7129;Parent=Msa0319500-mRNA-1
chr2_4 five_prime_UTR 19254686 19254977 19254686 ID=Msa0319500-mRNA-1:five_prime_utr;Parent=Msa0319500-mRNA-1
chr2_4 five_prime_UTR 19253503 19253711 19253503 ID=Msa0319500-mRNA-1:five_prime_utr;Parent=Msa0319500-mRNA-1
chr2_4 CDS 19253028 19253502 19253028 ID=Msa0319500-mRNA-1:cds;Parent=Msa0319500-mRNA-1
chr2_4 CDS 19252246 19252390 19252246 ID=Msa0319500-mRNA-1:cds;Parent=Msa0319500-mRNA-1
chr2_4 CDS 19251992 19252046 19251992 ID=Msa0319500-mRNA-1:cds;Parent=Msa0319500-mRNA-1
chr2_4 three_prime_UTR 19251626 19251991 19251626 ID=Msa0319500-mRNA-1:three_prime_utr;Parent=Msa0319500-mRNA-1
Gene Sequence

>Msa0319500

ATGGATCAAAGAAATGGAAGGGAGAAAGATATTGAAGTTGATATTGAAAGTGGATTGCCACTTATCGAAGATAACTCAAGGAGAATCTCTATGATTTCTAGTGGATTTGTTGGAGGTTCTGTTAATGGCGAAGCCAGGCCAAGTTCTTATTTGAATGAATCAAATTTAAGTGAAGTTTCTGTTAATATGATGAAAGTGGGGAACAAGGCTCCAGCAAAAGAAAAACGGAAAAAGGCGTCGGGTAAAAAGGCTGCCAAACCTCCGCGACCTCCACAAGGCCCGTCCTTGGACGCAGCAGATCATAAACTAATAAAGGAGATGTCTGAACTTGCGATGTTGAAGCGTGCAAGGATAGAGCGTATGAAAGCATTGAAGAAAATGAGAACTGCGAAATCGTCGTCGCCGTCATCTAATAGCAGCAGCATTGTGGCTATGATTTTCACTGTTATCTTCTTCATTGTGATAATCTGCCAAGGCATGTCATCAACTGGAAAAAGCTCAGTGTCAAGTTTCCAAGGATCACCTGTATCAGCAGGCGGAACAGAGGAGGGTTTGATTTCGGTTCAGTACCAACTCAATCCATCAAGTGATTCAAATGCGCCAGGGTCGGAGTCCATCAATTTTGTACAGCGGGTATCAGGTTCAGATTTGCACGAAAAACTGAGGACAGGTTGA

Protein sequence

>Msa0319500

MDQRNGREKDIEVDIESGLPLIEDNSRRISMISSGFVGGSVNGEARPSSYLNESNLSEVSVNMMKVGNKAPAKEKRKKASGKKAAKPPRPPQGPSLDAADHKLIKEMSELAMLKRARIERMKALKKMRTAKSSSPSSNSSSIVAMIFTVIFFIVIICQGMSSTGKSSVSSFQGSPVSAGGTEEGLISVQYQLNPSSDSNAPGSESINFVQRVSGSDLHEKLRTG*