Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1070360 | XP_003624550.1 | 98.976 | 293 | 3 | 0 | 1 | 293 | 1 | 293 | 0.0 | 610 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1070360 | sp|Q8LNZ5|XTHB_PHAAN | 84.983 | 293 | 44 | 0 | 1 | 293 | 1 | 293 | 0.0 | 548 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1070360 | Q2HRU5 | 98.976 | 293 | 3 | 0 | 1 | 293 | 1 | 293 | 0.0 | 610 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037180 | Msa1070360 | 0.806617 | 7.541738e-50 | -8.615850e-47 |
| Msa0091090 | Msa1070360 | -0.802803 | 4.717030e-49 | -8.615850e-47 |
| Msa0092220 | Msa1070360 | 0.809044 | 2.298710e-50 | -8.615850e-47 |
| Msa0610700 | Msa1070360 | -0.800429 | 1.447321e-48 | -8.615850e-47 |
| Msa0745140 | Msa1070360 | 0.800525 | 1.383537e-48 | -8.615850e-47 |
| Msa0177320 | Msa1070360 | 0.801581 | 8.414824e-49 | -8.615850e-47 |
| Msa0183200 | Msa1070360 | -0.815088 | 1.105853e-51 | -8.615850e-47 |
| Msa0184510 | Msa1070360 | -0.803027 | 4.239827e-49 | -8.615850e-47 |
| Msa0207680 | Msa1070360 | 0.862789 | 3.951612e-64 | -8.615850e-47 |
| Msa0209360 | Msa1070360 | 0.838693 | 2.471522e-57 | -8.615850e-47 |
| Msa0216340 | Msa1070360 | 0.807674 | 4.504686e-50 | -8.615850e-47 |
| Msa0226450 | Msa1070360 | -0.834894 | 2.301394e-56 | -8.615850e-47 |
| Msa0236940 | Msa1070360 | 0.808382 | 3.182672e-50 | -8.615850e-47 |
| Msa0378310 | Msa1070360 | -0.812861 | 3.425653e-51 | -8.615850e-47 |
| Msa0380980 | Msa1070360 | 0.813580 | 2.381628e-51 | -8.615850e-47 |
| Msa0382860 | Msa1070360 | 0.858247 | 9.390858e-63 | -8.615850e-47 |
| Msa0414250 | Msa1070360 | -0.837606 | 4.707527e-57 | -8.615850e-47 |
| Msa0432940 | Msa1070360 | 0.858015 | 1.100583e-62 | -8.615850e-47 |
| Msa0432970 | Msa1070360 | 0.860879 | 1.517727e-63 | -8.615850e-47 |
| Msa0436840 | Msa1070360 | 0.804816 | 1.801668e-49 | -8.615850e-47 |
| Msa0477030 | Msa1070360 | 0.850000 | 2.252217e-60 | -8.615850e-47 |
| Msa1024570 | Msa1070360 | 0.842834 | 2.029893e-58 | -8.615850e-47 |
| Msa1031180 | Msa1070360 | 0.959638 | 1.158956e-117 | -8.615850e-47 |
| Msa1070360 | Msa1119430 | 0.973715 | 6.699289e-137 | -8.615850e-47 |
| Msa1070360 | Msa1158200 | 0.897959 | 8.476064e-77 | -8.615850e-47 |
| Msa1070360 | Msa1236860 | -0.818940 | 1.507814e-52 | -8.615850e-47 |
| Msa1070360 | Msa1317240 | -0.800279 | 1.552665e-48 | -8.615850e-47 |
| Msa1070360 | Msa1333210 | 0.826452 | 2.691958e-54 | -8.615850e-47 |
| Msa1070360 | Msa1337450 | 0.800318 | 1.524916e-48 | -8.615850e-47 |
| Msa1070360 | Msa1371300 | 0.859627 | 3.627810e-63 | -8.615850e-47 |
| Msa1070360 | Msa1375000 | -0.806075 | 9.808758e-50 | -8.615850e-47 |
| Msa0256540 | Msa1070360 | 0.814411 | 1.562073e-51 | -8.615850e-47 |
| Msa0287640 | Msa1070360 | 0.808712 | 2.706085e-50 | -8.615850e-47 |
| Msa0295680 | Msa1070360 | 0.847517 | 1.100198e-59 | -8.615850e-47 |
| Msa0319500 | Msa1070360 | 0.824156 | 9.403442e-54 | -8.615850e-47 |
| Msa0334320 | Msa1070360 | 0.821153 | 4.698579e-53 | -8.615850e-47 |
| Msa0495820 | Msa1070360 | 0.802052 | 6.734896e-49 | -8.615850e-47 |
| Msa0576180 | Msa1070360 | 0.803192 | 3.918933e-49 | -8.615850e-47 |
| Msa0597700 | Msa1070360 | 0.818068 | 2.377305e-52 | -8.615850e-47 |
| Msa0887100 | Msa1070360 | -0.828973 | 6.674981e-55 | -8.615850e-47 |
| Msa0901820 | Msa1070360 | 0.806108 | 9.651971e-50 | -8.615850e-47 |
| Msa0913140 | Msa1070360 | -0.827149 | 1.834890e-54 | -8.615850e-47 |
| Msa0932140 | Msa1070360 | 0.815625 | 8.400996e-52 | -8.615850e-47 |
| Msa0950470 | Msa1070360 | -0.849779 | 2.596969e-60 | -8.615850e-47 |
| Msa0950570 | Msa1070360 | -0.849906 | 2.393544e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1070360 | MtrunA17_Chr7g0252631 | 98.976 | 293 | 3 | 0 | 1 | 293 | 1 | 293 | 0.0 | 610 |
| Msa1070360 | MtrunA17_Chr7g0252621 | 97.611 | 293 | 7 | 0 | 1 | 293 | 1 | 293 | 0.0 | 602 |
| Msa1070360 | MtrunA17_Chr7g0252601 | 85.666 | 293 | 42 | 0 | 1 | 293 | 1 | 293 | 0.0 | 545 |
| Msa1070360 | MtrunA17_Chr6g0461731 | 81.911 | 293 | 53 | 0 | 1 | 293 | 24 | 316 | 0.0 | 521 |
| Msa1070360 | MtrunA17_Chr6g0461761 | 83.275 | 287 | 47 | 1 | 8 | 293 | 7 | 293 | 0.0 | 515 |
| Msa1070360 | MtrunA17_Chr3g0122031 | 53.082 | 292 | 125 | 3 | 1 | 291 | 1 | 281 | 6.97e-104 | 304 |
| Msa1070360 | MtrunA17_Chr3g0122021 | 52.740 | 292 | 126 | 3 | 1 | 291 | 1 | 281 | 9.77e-104 | 304 |
| Msa1070360 | MtrunA17_Chr4g0054431 | 52.330 | 279 | 126 | 3 | 10 | 287 | 15 | 287 | 2.11e-103 | 303 |
| Msa1070360 | MtrunA17_Chr2g0323161 | 50.172 | 291 | 124 | 4 | 7 | 289 | 11 | 288 | 3.45e-103 | 303 |
| Msa1070360 | MtrunA17_Chr4g0054451 | 54.864 | 257 | 114 | 2 | 32 | 287 | 34 | 289 | 1.54e-102 | 301 |
| Msa1070360 | MtrunA17_Chr4g0072611 | 53.287 | 289 | 121 | 4 | 3 | 288 | 4 | 281 | 4.60e-102 | 300 |
| Msa1070360 | MtrunA17_Chr8g0377841 | 52.817 | 284 | 118 | 5 | 5 | 287 | 13 | 281 | 3.35e-101 | 297 |
| Msa1070360 | MtrunA17_Chr4g0023961 | 49.653 | 288 | 125 | 4 | 8 | 287 | 13 | 288 | 1.02e-100 | 296 |
| Msa1070360 | MtrunA17_Chr7g0258911 | 52.414 | 290 | 124 | 4 | 1 | 287 | 1 | 279 | 6.64e-98 | 289 |
| Msa1070360 | MtrunA17_Chr4g0072671 | 55.303 | 264 | 106 | 3 | 32 | 287 | 26 | 285 | 3.17e-97 | 288 |
| Msa1070360 | MtrunA17_Chr1g0206681 | 48.239 | 284 | 143 | 3 | 8 | 287 | 8 | 291 | 1.63e-94 | 281 |
| Msa1070360 | MtrunA17_Chr6g0486581 | 48.864 | 264 | 129 | 4 | 28 | 287 | 22 | 283 | 1.24e-93 | 278 |
| Msa1070360 | MtrunA17_Chr1g0206081 | 48.621 | 290 | 145 | 2 | 2 | 287 | 5 | 294 | 1.89e-93 | 278 |
| Msa1070360 | MtrunA17_Chr4g0071341 | 52.490 | 261 | 115 | 3 | 32 | 287 | 25 | 281 | 2.80e-93 | 277 |
| Msa1070360 | MtrunA17_Chr8g0389641 | 47.782 | 293 | 104 | 4 | 1 | 291 | 1 | 246 | 2.73e-92 | 273 |
| Msa1070360 | MtrunA17_Chr2g0299061 | 52.075 | 265 | 114 | 3 | 32 | 287 | 26 | 286 | 2.57e-91 | 273 |
| Msa1070360 | MtrunA17_Chr4g0072601 | 46.599 | 294 | 139 | 5 | 1 | 287 | 1 | 283 | 1.50e-90 | 271 |
| Msa1070360 | MtrunA17_Chr4g0072681 | 54.202 | 238 | 104 | 2 | 57 | 289 | 8 | 245 | 7.01e-86 | 257 |
| Msa1070360 | MtrunA17_Chr5g0443391 | 49.378 | 241 | 115 | 3 | 50 | 289 | 46 | 280 | 5.26e-81 | 246 |
| Msa1070360 | MtrunA17_Chr3g0096651 | 47.177 | 248 | 118 | 3 | 51 | 293 | 49 | 288 | 2.99e-80 | 244 |
| Msa1070360 | MtrunA17_Chr8g0340001 | 50.222 | 225 | 111 | 1 | 63 | 287 | 8 | 231 | 1.17e-79 | 241 |
| Msa1070360 | MtrunA17_Chr8g0390201 | 51.282 | 195 | 91 | 3 | 97 | 287 | 15 | 209 | 1.68e-68 | 212 |
| Msa1070360 | MtrunA17_Chr2g0303861 | 42.545 | 275 | 149 | 7 | 8 | 277 | 1 | 271 | 5.30e-66 | 207 |
| Msa1070360 | MtrunA17_Chr2g0303721 | 40.636 | 283 | 151 | 7 | 7 | 288 | 5 | 271 | 3.02e-64 | 203 |
| Msa1070360 | MtrunA17_Chr7g0235541 | 47.907 | 215 | 100 | 5 | 79 | 288 | 1 | 208 | 2.79e-63 | 198 |
| Msa1070360 | MtrunA17_Chr5g0410621 | 37.546 | 269 | 156 | 5 | 30 | 288 | 40 | 306 | 6.14e-60 | 194 |
| Msa1070360 | MtrunA17_Chr4g0028221 | 35.762 | 302 | 162 | 8 | 5 | 287 | 16 | 304 | 8.38e-60 | 192 |
| Msa1070360 | MtrunA17_Chr8g0365231 | 34.551 | 301 | 174 | 6 | 8 | 288 | 14 | 311 | 4.56e-59 | 191 |
| Msa1070360 | MtrunA17_Chr7g0264731 | 37.410 | 278 | 146 | 7 | 31 | 287 | 21 | 291 | 3.88e-58 | 188 |
| Msa1070360 | MtrunA17_Chr1g0180451 | 38.545 | 275 | 148 | 8 | 23 | 287 | 31 | 294 | 6.79e-58 | 187 |
| Msa1070360 | MtrunA17_Chr1g0161951 | 38.321 | 274 | 158 | 5 | 24 | 290 | 25 | 294 | 2.55e-57 | 187 |
| Msa1070360 | MtrunA17_Chr2g0327411 | 37.818 | 275 | 151 | 7 | 23 | 287 | 45 | 309 | 7.22e-57 | 185 |
| Msa1070360 | MtrunA17_Chr8g0375981 | 36.177 | 293 | 173 | 6 | 1 | 287 | 6 | 290 | 2.74e-56 | 184 |
| Msa1070360 | MtrunA17_Chr8g0382041 | 36.431 | 269 | 154 | 6 | 30 | 287 | 32 | 294 | 3.80e-55 | 181 |
| Msa1070360 | MtrunA17_Chr4g0072641 | 51.969 | 127 | 45 | 3 | 162 | 287 | 37 | 148 | 4.65e-37 | 129 |
| Msa1070360 | MtrunA17_Chr8g0374231 | 45.545 | 101 | 54 | 1 | 188 | 287 | 1 | 101 | 3.05e-25 | 97.1 |
| Msa1070360 | MtrunA17_Chr8g0350711 | 33.908 | 174 | 107 | 4 | 54 | 225 | 54 | 221 | 6.50e-15 | 72.4 |
| Msa1070360 | MtrunA17_Chr8g0390181 | 44.444 | 72 | 38 | 1 | 28 | 99 | 24 | 93 | 5.22e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1070360 | AT5G13870.2 | 80.488 | 287 | 56 | 0 | 7 | 293 | 7 | 293 | 0.0 | 508 |
| Msa1070360 | AT5G13870.1 | 80.488 | 287 | 56 | 0 | 7 | 293 | 7 | 293 | 0.0 | 508 |
| Msa1070360 | AT5G13870.3 | 80.488 | 287 | 56 | 0 | 7 | 293 | 7 | 293 | 0.0 | 508 |
| Msa1070360 | AT2G06850.1 | 76.792 | 293 | 67 | 1 | 1 | 292 | 3 | 295 | 5.95e-177 | 490 |
| Msa1070360 | AT2G06850.2 | 80.519 | 231 | 45 | 0 | 62 | 292 | 5 | 235 | 2.41e-147 | 413 |
| Msa1070360 | AT5G65730.1 | 51.590 | 283 | 133 | 3 | 7 | 288 | 12 | 291 | 7.96e-106 | 310 |
| Msa1070360 | AT3G23730.1 | 56.061 | 264 | 112 | 2 | 32 | 291 | 27 | 290 | 9.68e-106 | 310 |
| Msa1070360 | AT4G14130.1 | 57.422 | 256 | 104 | 3 | 39 | 291 | 35 | 288 | 5.08e-103 | 303 |
| Msa1070360 | AT4G37800.1 | 50.704 | 284 | 133 | 3 | 5 | 287 | 12 | 289 | 3.75e-102 | 300 |
| Msa1070360 | AT4G03210.1 | 49.828 | 291 | 137 | 3 | 5 | 293 | 7 | 290 | 1.88e-101 | 299 |
| Msa1070360 | AT5G57550.1 | 50.173 | 289 | 137 | 3 | 1 | 288 | 1 | 283 | 1.81e-98 | 291 |
| Msa1070360 | AT5G57560.1 | 51.220 | 287 | 121 | 4 | 8 | 287 | 7 | 281 | 9.17e-98 | 289 |
| Msa1070360 | AT4G30270.1 | 51.408 | 284 | 111 | 4 | 5 | 287 | 8 | 265 | 2.08e-95 | 283 |
| Msa1070360 | AT1G11545.1 | 50.704 | 284 | 130 | 4 | 10 | 287 | 20 | 299 | 4.64e-95 | 283 |
| Msa1070360 | AT5G57530.1 | 53.516 | 256 | 111 | 4 | 39 | 290 | 34 | 285 | 2.62e-94 | 280 |
| Msa1070360 | AT4G25810.1 | 51.056 | 284 | 124 | 5 | 10 | 287 | 9 | 283 | 3.52e-94 | 280 |
| Msa1070360 | AT5G57540.1 | 52.091 | 263 | 118 | 4 | 32 | 290 | 26 | 284 | 2.17e-93 | 278 |
| Msa1070360 | AT4G03210.2 | 54.978 | 231 | 102 | 1 | 65 | 293 | 32 | 262 | 4.38e-93 | 276 |
| Msa1070360 | AT4G13090.1 | 48.944 | 284 | 138 | 4 | 8 | 288 | 10 | 289 | 5.23e-92 | 275 |
| Msa1070360 | AT5G48070.1 | 53.750 | 240 | 105 | 3 | 49 | 287 | 47 | 281 | 1.23e-89 | 268 |
| Msa1070360 | AT2G14620.1 | 45.775 | 284 | 150 | 3 | 8 | 287 | 11 | 294 | 2.28e-88 | 266 |
| Msa1070360 | AT4G28850.1 | 45.172 | 290 | 148 | 5 | 7 | 291 | 8 | 291 | 2.84e-88 | 265 |
| Msa1070360 | AT2G18800.1 | 48.162 | 272 | 122 | 4 | 32 | 287 | 28 | 296 | 4.97e-88 | 265 |
| Msa1070360 | AT4G25820.1 | 51.575 | 254 | 115 | 3 | 39 | 288 | 37 | 286 | 2.18e-87 | 263 |
| Msa1070360 | AT4G13080.1 | 46.718 | 259 | 135 | 3 | 30 | 288 | 37 | 292 | 1.82e-85 | 258 |
| Msa1070360 | AT3G25050.1 | 47.126 | 261 | 131 | 4 | 30 | 287 | 33 | 289 | 2.64e-85 | 258 |
| Msa1070360 | AT4G30290.1 | 53.097 | 226 | 100 | 3 | 63 | 287 | 56 | 276 | 2.44e-82 | 249 |
| Msa1070360 | AT1G65310.1 | 53.540 | 226 | 99 | 3 | 63 | 287 | 61 | 281 | 4.19e-82 | 249 |
| Msa1070360 | AT1G65310.2 | 53.540 | 226 | 99 | 3 | 63 | 287 | 83 | 303 | 5.44e-82 | 249 |
| Msa1070360 | AT4G30280.1 | 52.655 | 226 | 101 | 3 | 63 | 287 | 61 | 281 | 2.03e-81 | 247 |
| Msa1070360 | AT2G14620.2 | 48.739 | 238 | 120 | 2 | 52 | 287 | 7 | 244 | 3.75e-81 | 246 |
| Msa1070360 | AT2G14620.3 | 51.142 | 219 | 105 | 2 | 71 | 287 | 15 | 233 | 3.51e-79 | 240 |
| Msa1070360 | AT3G44990.1 | 42.264 | 265 | 136 | 7 | 31 | 287 | 38 | 293 | 8.81e-62 | 197 |
| Msa1070360 | AT1G32170.1 | 41.079 | 241 | 134 | 4 | 54 | 287 | 54 | 293 | 1.52e-60 | 196 |
| Msa1070360 | AT3G48580.1 | 39.535 | 258 | 140 | 5 | 30 | 287 | 32 | 273 | 1.75e-58 | 189 |
| Msa1070360 | AT1G14720.1 | 35.862 | 290 | 177 | 5 | 5 | 287 | 3 | 290 | 5.33e-58 | 189 |
| Msa1070360 | AT2G36870.1 | 40.244 | 246 | 132 | 5 | 52 | 289 | 61 | 299 | 2.10e-56 | 184 |
| Msa1070360 | AT4G18990.1 | 38.735 | 253 | 134 | 5 | 54 | 287 | 62 | 312 | 8.14e-55 | 181 |
| Msa1070360 | AT2G01850.1 | 38.430 | 242 | 143 | 3 | 51 | 287 | 50 | 290 | 1.13e-53 | 178 |
| Msa1070360 | AT1G10550.1 | 36.364 | 253 | 142 | 6 | 51 | 287 | 60 | 309 | 8.94e-53 | 175 |
| Msa1070360 | AT3G48580.3 | 38.938 | 226 | 123 | 4 | 62 | 287 | 4 | 214 | 8.72e-51 | 167 |
| Msa1070360 | AT3G48580.2 | 34.496 | 258 | 133 | 6 | 30 | 287 | 32 | 253 | 4.39e-43 | 148 |
| Msa1070360 | AT4G18990.2 | 34.914 | 232 | 124 | 5 | 81 | 287 | 9 | 238 | 7.78e-43 | 148 |
| Msa1070360 | AT2G36870.2 | 44.915 | 118 | 57 | 2 | 52 | 161 | 61 | 178 | 3.16e-28 | 107 |
Find 80 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAAATGAGTTCTTCATTT+TGG | 0.129453 | 7_2:+66399359 | Msa1070360:exon |
| ATCTTCATTGGTTGGTTAAA+TGG | 0.164613 | 7_2:-66400663 | None:intergenic |
| GGCCTAAAACCTTTGGTAAA+AGG | 0.165793 | 7_2:-66399284 | None:intergenic |
| TGAAGATATACAACAGTTTA+TGG | 0.169467 | 7_2:+66400679 | Msa1070360:CDS |
| GCCTTGTGTTGCACAGAATT+TGG | 0.221522 | 7_2:-66400817 | None:intergenic |
| CCAAAATGAAGAACTCATTT+TGG | 0.248059 | 7_2:-66399359 | None:intergenic |
| TTCACAGATACTCTATTCTA+TGG | 0.260832 | 7_2:+66400064 | Msa1070360:CDS |
| AAGAACAAAGGATCTTTCTT+TGG | 0.288385 | 7_2:+66400022 | Msa1070360:CDS |
| ATCAGTGCAATAGTTATAAA+TGG | 0.324527 | 7_2:-66400922 | None:intergenic |
| TACAAAAGTTTCCACATTGA+TGG | 0.356283 | 7_2:+66400774 | Msa1070360:CDS |
| GCATCAAGATCACGAAATTC+AGG | 0.366582 | 7_2:-66400858 | None:intergenic |
| CTCAATGGCGTAGGCTAAGA+TGG | 0.370855 | 7_2:+66400883 | Msa1070360:CDS |
| CTGCCAAATGGTACATCAAC+TGG | 0.374020 | 7_2:-66399442 | None:intergenic |
| TTTATAACTATTGCACTGAT+AGG | 0.375154 | 7_2:+66400925 | Msa1070360:CDS |
| GCCTAAAACCTTTGGTAAAA+GGG | 0.375639 | 7_2:-66399283 | None:intergenic |
| AAACTGTTGTATATCTTCAT+TGG | 0.377706 | 7_2:-66400675 | None:intergenic |
| TATCTGTGAAACTCCTTTGT+TGG | 0.396635 | 7_2:-66400051 | None:intergenic |
| GATCATATCAAATACTTCAA+TGG | 0.398017 | 7_2:+66399490 | Msa1070360:CDS |
| GTTTATGGAATGCAGATGAT+TGG | 0.401396 | 7_2:+66400694 | Msa1070360:CDS |
| GTTCAAGAACAGCAAGGACT+TGG | 0.401999 | 7_2:+66400629 | Msa1070360:CDS |
| TTGTAGATGATGTACCAATC+AGG | 0.405806 | 7_2:+66400604 | Msa1070360:CDS |
| TCCAAAGGATCATACTTGTT+TGG | 0.409589 | 7_2:+66399740 | Msa1070360:CDS |
| GGTACATCAACTGGCTTCCT+TGG | 0.412450 | 7_2:-66399433 | None:intergenic |
| ACATTTGTTTGTAAAATGTA+AGG | 0.414616 | 7_2:-66399976 | None:intergenic |
| GAGTTCTTGGGGAACAGAAC+AGG | 0.419669 | 7_2:+66399949 | Msa1070360:CDS |
| AGTTAAGTACTTACACAATC+TGG | 0.424003 | 7_2:-66400095 | None:intergenic |
| ATATATAGGCCTAAAACCTT+TGG | 0.425647 | 7_2:-66399291 | None:intergenic |
| GCCAAACAAGTATGATCCTT+TGG | 0.434422 | 7_2:-66399741 | None:intergenic |
| GCTAAGACTTGGGTATATAT+AGG | 0.434684 | 7_2:-66399305 | None:intergenic |
| AAGCCAGTTGATGTACCATT+TGG | 0.436123 | 7_2:+66399439 | Msa1070360:CDS |
| CTGTTCTTGAACACCCTGAT+TGG | 0.452101 | 7_2:-66400618 | None:intergenic |
| TTGCATTCAGGTGGAATTTG+AGG | 0.453359 | 7_2:-66400957 | None:intergenic |
| ATGAACATAAAGATGGTTCC+TGG | 0.454098 | 7_2:+66399773 | Msa1070360:CDS |
| TTACAAACAAATGTGTTCAC+TGG | 0.454841 | 7_2:+66399985 | Msa1070360:CDS |
| GGGTAATAGTTTCTGCCAAA+TGG | 0.460623 | 7_2:-66399454 | None:intergenic |
| GCAGAAACTATTACCCAACT+TGG | 0.466236 | 7_2:+66399461 | Msa1070360:CDS |
| TTTATGGAATGCAGATGATT+GGG | 0.473254 | 7_2:+66400695 | Msa1070360:CDS |
| TTCAAGTTGTGAAAAGTTTG+TGG | 0.473617 | 7_2:-66399327 | None:intergenic |
| GTGATCTTGATGCTGCTCAA+TGG | 0.483264 | 7_2:+66400868 | Msa1070360:CDS |
| TGTTGTATATCTTCATTGGT+TGG | 0.483857 | 7_2:-66400671 | None:intergenic |
| AAAACTCGATGGAACAATAG+TGG | 0.504546 | 7_2:-66401164 | None:intergenic |
| ATGGTTCCTGGTGATTCAGC+TGG | 0.504587 | 7_2:+66399785 | Msa1070360:CDS |
| ACATCAACTGGCTTCCTTGG+AGG | 0.507363 | 7_2:-66399430 | None:intergenic |
| AAAGTTTGTGGCTAAGACTT+GGG | 0.508728 | 7_2:-66399315 | None:intergenic |
| TATGATCAAAAGCCCAAGTT+GGG | 0.522271 | 7_2:-66399474 | None:intergenic |
| TGTAGATGATGTACCAATCA+GGG | 0.530316 | 7_2:+66400605 | Msa1070360:CDS |
| CTTCACTCTGTGCTCCTCCA+AGG | 0.543749 | 7_2:+66399416 | Msa1070360:CDS |
| CAGAAACTATTACCCAACTT+GGG | 0.544276 | 7_2:+66399462 | Msa1070360:CDS |
| TCTTTATGTTCATACTGAAG+TGG | 0.547122 | 7_2:-66399763 | None:intergenic |
| AAAAGTTTGTGGCTAAGACT+TGG | 0.547818 | 7_2:-66399316 | None:intergenic |
| TGCAGATGATTGGGCAACAA+GGG | 0.548054 | 7_2:+66400704 | Msa1070360:CDS |
| ATGCAGATGATTGGGCAACA+AGG | 0.548692 | 7_2:+66400703 | Msa1070360:CDS |
| CTTCAGTATGAACATAAAGA+TGG | 0.549292 | 7_2:+66399766 | Msa1070360:CDS |
| GTGCAACACAAGGCAAAAGA+TGG | 0.550413 | 7_2:+66400826 | Msa1070360:CDS |
| CAACACAAGGCAAAAGATGG+TGG | 0.550815 | 7_2:+66400829 | Msa1070360:CDS |
| AAGTATATAAAGAAAGAGAG+AGG | 0.551126 | 7_2:+66399245 | Msa1070360:five_prime_UTR |
| CAAACAAATGTGTTCACTGG+TGG | 0.551578 | 7_2:+66399988 | Msa1070360:CDS |
| TCTCAATATACAAAACTCGA+TGG | 0.560237 | 7_2:-66401175 | None:intergenic |
| ATATGATCAAAAGCCCAAGT+TGG | 0.560782 | 7_2:-66399475 | None:intergenic |
| GCCAAATTCTGTGCAACACA+AGG | 0.563859 | 7_2:+66400816 | Msa1070360:CDS |
| GTGGATTAGAGAAAACTGAT+TGG | 0.570924 | 7_2:+66400727 | Msa1070360:CDS |
| GATGATTGGGCAACAAGGGG+TGG | 0.574149 | 7_2:+66400708 | Msa1070360:CDS |
| TGATGAAAATTTATATGTCA+CGG | 0.576058 | 7_2:-66400986 | None:intergenic |
| TCAAAAGCACCATTCATAGC+AGG | 0.577483 | 7_2:+66400750 | Msa1070360:CDS |
| TTCAAGAACAGCAAGGACTT+GGG | 0.586766 | 7_2:+66400630 | Msa1070360:CDS |
| CTTCATCTTGATAAGTACAC+TGG | 0.589751 | 7_2:+66399529 | Msa1070360:CDS |
| TTGATGCTGCTCAATGGCGT+AGG | 0.593657 | 7_2:+66400874 | Msa1070360:CDS |
| AATGATATATGTCTAATACA+AGG | 0.607205 | 7_2:-66401127 | None:intergenic |
| TAAAGAAAGAGAGAGGAACA+TGG | 0.611334 | 7_2:+66399252 | Msa1070360:five_prime_UTR |
| TCAATGGCGTAGGCTAAGAT+GGG | 0.614694 | 7_2:+66400884 | Msa1070360:CDS |
| AATGTGTTCACTGGTGGACA+AGG | 0.617308 | 7_2:+66399994 | Msa1070360:CDS |
| AACACAAGGCAAAAGATGGT+GGG | 0.620136 | 7_2:+66400830 | Msa1070360:CDS |
| TCTTTGGTTTGATCCAACAA+AGG | 0.620801 | 7_2:+66400038 | Msa1070360:CDS |
| CATATCAAATACTTCAATGG+TGG | 0.624848 | 7_2:+66399493 | Msa1070360:CDS |
| AAAGAAAGAGAGAGGAACAT+GGG | 0.632149 | 7_2:+66399253 | Msa1070360:five_prime_UTR |
| GCAGATGATTGGGCAACAAG+GGG | 0.654510 | 7_2:+66400705 | Msa1070360:CDS |
| ACTGTTCCAGCTGAATCACC+AGG | 0.657325 | 7_2:-66399791 | None:intergenic |
| GACAAGGTAACAAAGAACAA+AGG | 0.658573 | 7_2:+66400010 | Msa1070360:CDS |
| ATGATTCACAACCATCAATG+TGG | 0.677115 | 7_2:-66400785 | None:intergenic |
| CAGGGTGTTCAAGAACAGCA+AGG | 0.698366 | 7_2:+66400623 | Msa1070360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAATATGATACAATATA+TGG | - | chr7_2:66400495-66400514 | None:intergenic | 10.0% |
| !! | AAAATAAATAAATTAGTTAC+TGG | - | chr7_2:66400530-66400549 | None:intergenic | 10.0% |
| !!! | TGTAATTTTAATTTTACTTT+AGG | + | chr7_2:66401215-66401234 | Msa1070360:three_prime_UTR | 10.0% |
| !! | TTTAAATATGATACAATATA+TGG | - | chr7_2:66400495-66400514 | None:intergenic | 10.0% |
| !! | AAAATAAATAAATTAGTTAC+TGG | - | chr7_2:66400530-66400549 | None:intergenic | 10.0% |
| !!! | TGTAATTTTAATTTTACTTT+AGG | + | chr7_2:66401215-66401234 | Msa1070360:three_prime_UTR | 10.0% |
| !!! | TTTTAATATTTTTTCTTGGA+GGG | - | chr7_2:66399216-66399235 | None:intergenic | 15.0% |
| !!! | CTTCTTTTAATATTTTTTCT+TGG | - | chr7_2:66399220-66399239 | None:intergenic | 15.0% |
| !! | TTAAGTTATTTATACAAACA+TGG | - | chr7_2:66399592-66399611 | None:intergenic | 15.0% |
| !! | TTACTTTATAAATCTAAAAG+AGG | - | chr7_2:66400206-66400225 | None:intergenic | 15.0% |
| !!! | TTTTAATATTTTTTCTTGGA+GGG | - | chr7_2:66399216-66399235 | None:intergenic | 15.0% |
| !!! | CTTCTTTTAATATTTTTTCT+TGG | - | chr7_2:66399220-66399239 | None:intergenic | 15.0% |
| !! | TTAAGTTATTTATACAAACA+TGG | - | chr7_2:66399592-66399611 | None:intergenic | 15.0% |
| !! | TTACTTTATAAATCTAAAAG+AGG | - | chr7_2:66400206-66400225 | None:intergenic | 15.0% |
| !!! | CTTTTAATATTTTTTCTTGG+AGG | - | chr7_2:66399217-66399236 | None:intergenic | 20.0% |
| !!! | TTTCTAACTACTTTTTGTAT+AGG | + | chr7_2:66399704-66399723 | Msa1070360:intron | 20.0% |
| !! | TGTATGTACAAAAACATTTA+AGG | + | chr7_2:66399826-66399845 | Msa1070360:intron | 20.0% |
| !! | ACATTTGTTTGTAAAATGTA+AGG | - | chr7_2:66399979-66399998 | None:intergenic | 20.0% |
| !! | ATTCAAGATTGTTAAAGATT+AGG | - | chr7_2:66400142-66400161 | None:intergenic | 20.0% |
| !! | AATCATATTGAGATATGATT+TGG | - | chr7_2:66400258-66400277 | None:intergenic | 20.0% |
| !!! | AGTTATAAATGGTGTATTTT+TGG | - | chr7_2:66400914-66400933 | None:intergenic | 20.0% |
| !! | TGATGAAAATTTATATGTCA+CGG | - | chr7_2:66400989-66401008 | None:intergenic | 20.0% |
| !! | AATGATATATGTCTAATACA+AGG | - | chr7_2:66401130-66401149 | None:intergenic | 20.0% |
| !!! | CTTTTAATATTTTTTCTTGG+AGG | - | chr7_2:66399217-66399236 | None:intergenic | 20.0% |
| !!! | TTTCTAACTACTTTTTGTAT+AGG | + | chr7_2:66399704-66399723 | Msa1070360:intron | 20.0% |
| !! | TGTATGTACAAAAACATTTA+AGG | + | chr7_2:66399826-66399845 | Msa1070360:intron | 20.0% |
| !! | ACATTTGTTTGTAAAATGTA+AGG | - | chr7_2:66399979-66399998 | None:intergenic | 20.0% |
| !! | ATTCAAGATTGTTAAAGATT+AGG | - | chr7_2:66400142-66400161 | None:intergenic | 20.0% |
| !! | AATCATATTGAGATATGATT+TGG | - | chr7_2:66400258-66400277 | None:intergenic | 20.0% |
| !!! | AGTTATAAATGGTGTATTTT+TGG | - | chr7_2:66400914-66400933 | None:intergenic | 20.0% |
| !! | TGATGAAAATTTATATGTCA+CGG | - | chr7_2:66400989-66401008 | None:intergenic | 20.0% |
| !! | AATGATATATGTCTAATACA+AGG | - | chr7_2:66401130-66401149 | None:intergenic | 20.0% |
| ! | AAGTATATAAAGAAAGAGAG+AGG | + | chr7_2:66399245-66399264 | Msa1070360:five_prime_UTR | 25.0% |
| ! | GATCATATCAAATACTTCAA+TGG | + | chr7_2:66399490-66399509 | Msa1070360:CDS | 25.0% |
| ! | ACTTCAAAACTTTCCTATTT+AGG | + | chr7_2:66399566-66399585 | Msa1070360:intron | 25.0% |
| ! | TAAAAATAGTGTGTACATGA+GGG | - | chr7_2:66399623-66399642 | None:intergenic | 25.0% |
| ! | ATAAAAATAGTGTGTACATG+AGG | - | chr7_2:66399624-66399643 | None:intergenic | 25.0% |
| !!! | TGAAATAGATTTTGAGTTCT+TGG | + | chr7_2:66399936-66399955 | Msa1070360:CDS | 25.0% |
| !!! | GAAATAGATTTTGAGTTCTT+GGG | + | chr7_2:66399937-66399956 | Msa1070360:CDS | 25.0% |
| !!! | AAATAGATTTTGAGTTCTTG+GGG | + | chr7_2:66399938-66399957 | Msa1070360:CDS | 25.0% |
| ! | CTTACCTAAGAAGAATTAAT+TGG | + | chr7_2:66400408-66400427 | Msa1070360:intron | 25.0% |
| ! | TACACCAATTAATTCTTCTT+AGG | - | chr7_2:66400415-66400434 | None:intergenic | 25.0% |
| !! | ATGATACAATATATGGATTG+TGG | - | chr7_2:66400488-66400507 | None:intergenic | 25.0% |
| ! | TTGCACAAAAATAAATCAGT+TGG | - | chr7_2:66400562-66400581 | None:intergenic | 25.0% |
| !!! | TTATTTTTGTGCAACTATGA+TGG | + | chr7_2:66400568-66400587 | Msa1070360:intron | 25.0% |
| !!! | TATTTTTGTGCAACTATGAT+GGG | + | chr7_2:66400569-66400588 | Msa1070360:intron | 25.0% |
| ! | AAACTGTTGTATATCTTCAT+TGG | - | chr7_2:66400678-66400697 | None:intergenic | 25.0% |
| ! | TGAAGATATACAACAGTTTA+TGG | + | chr7_2:66400679-66400698 | Msa1070360:CDS | 25.0% |
| ! | ATCAGTGCAATAGTTATAAA+TGG | - | chr7_2:66400925-66400944 | None:intergenic | 25.0% |
| !! | TTTATAACTATTGCACTGAT+AGG | + | chr7_2:66400925-66400944 | Msa1070360:CDS | 25.0% |
| ! | AAGTATATAAAGAAAGAGAG+AGG | + | chr7_2:66399245-66399264 | Msa1070360:five_prime_UTR | 25.0% |
| ! | GATCATATCAAATACTTCAA+TGG | + | chr7_2:66399490-66399509 | Msa1070360:CDS | 25.0% |
| ! | ACTTCAAAACTTTCCTATTT+AGG | + | chr7_2:66399566-66399585 | Msa1070360:intron | 25.0% |
| ! | TAAAAATAGTGTGTACATGA+GGG | - | chr7_2:66399623-66399642 | None:intergenic | 25.0% |
| ! | ATAAAAATAGTGTGTACATG+AGG | - | chr7_2:66399624-66399643 | None:intergenic | 25.0% |
| !!! | TGAAATAGATTTTGAGTTCT+TGG | + | chr7_2:66399936-66399955 | Msa1070360:CDS | 25.0% |
| !!! | GAAATAGATTTTGAGTTCTT+GGG | + | chr7_2:66399937-66399956 | Msa1070360:CDS | 25.0% |
| !!! | AAATAGATTTTGAGTTCTTG+GGG | + | chr7_2:66399938-66399957 | Msa1070360:CDS | 25.0% |
| ! | CTTACCTAAGAAGAATTAAT+TGG | + | chr7_2:66400408-66400427 | Msa1070360:intron | 25.0% |
| ! | TACACCAATTAATTCTTCTT+AGG | - | chr7_2:66400415-66400434 | None:intergenic | 25.0% |
| !! | ATGATACAATATATGGATTG+TGG | - | chr7_2:66400488-66400507 | None:intergenic | 25.0% |
| ! | TTGCACAAAAATAAATCAGT+TGG | - | chr7_2:66400562-66400581 | None:intergenic | 25.0% |
| !!! | TTATTTTTGTGCAACTATGA+TGG | + | chr7_2:66400568-66400587 | Msa1070360:intron | 25.0% |
| !!! | TATTTTTGTGCAACTATGAT+GGG | + | chr7_2:66400569-66400588 | Msa1070360:intron | 25.0% |
| ! | AAACTGTTGTATATCTTCAT+TGG | - | chr7_2:66400678-66400697 | None:intergenic | 25.0% |
| ! | TGAAGATATACAACAGTTTA+TGG | + | chr7_2:66400679-66400698 | Msa1070360:CDS | 25.0% |
| ! | ATCAGTGCAATAGTTATAAA+TGG | - | chr7_2:66400925-66400944 | None:intergenic | 25.0% |
| !! | TTTATAACTATTGCACTGAT+AGG | + | chr7_2:66400925-66400944 | Msa1070360:CDS | 25.0% |
| !!! | AATATTTTTTCTTGGAGGGT+AGG | - | chr7_2:66399212-66399231 | None:intergenic | 30.0% |
| ATATATAGGCCTAAAACCTT+TGG | - | chr7_2:66399294-66399313 | None:intergenic | 30.0% | |
| !! | TTCAAGTTGTGAAAAGTTTG+TGG | - | chr7_2:66399330-66399349 | None:intergenic | 30.0% |
| ! | CCAAAATGAAGAACTCATTT+TGG | - | chr7_2:66399362-66399381 | None:intergenic | 30.0% |
| ! | CCAAAATGAGTTCTTCATTT+TGG | + | chr7_2:66399359-66399378 | Msa1070360:exon | 30.0% |
| CATATCAAATACTTCAATGG+TGG | + | chr7_2:66399493-66399512 | Msa1070360:CDS | 30.0% | |
| TATACAAACATGGCCTAAAT+AGG | - | chr7_2:66399582-66399601 | None:intergenic | 30.0% | |
| !!! | ACTACTTTTTGTATAGGTAC+TGG | + | chr7_2:66399710-66399729 | Msa1070360:intron | 30.0% |
| TCTTTATGTTCATACTGAAG+TGG | - | chr7_2:66399766-66399785 | None:intergenic | 30.0% | |
| CTTCAGTATGAACATAAAGA+TGG | + | chr7_2:66399766-66399785 | Msa1070360:CDS | 30.0% | |
| TTACAAACAAATGTGTTCAC+TGG | + | chr7_2:66399985-66400004 | Msa1070360:CDS | 30.0% | |
| AAGAACAAAGGATCTTTCTT+TGG | + | chr7_2:66400022-66400041 | Msa1070360:CDS | 30.0% | |
| TTCACAGATACTCTATTCTA+TGG | + | chr7_2:66400064-66400083 | Msa1070360:CDS | 30.0% | |
| AGTTAAGTACTTACACAATC+TGG | - | chr7_2:66400098-66400117 | None:intergenic | 30.0% | |
| GTTAAAGATTAGGTGACTAT+TGG | - | chr7_2:66400132-66400151 | None:intergenic | 30.0% | |
| ! | ATCTTCATTGGTTGGTTAAA+TGG | - | chr7_2:66400666-66400685 | None:intergenic | 30.0% |
| TGTTGTATATCTTCATTGGT+TGG | - | chr7_2:66400674-66400693 | None:intergenic | 30.0% | |
| TTTATGGAATGCAGATGATT+GGG | + | chr7_2:66400695-66400714 | Msa1070360:CDS | 30.0% | |
| TACAAAAGTTTCCACATTGA+TGG | + | chr7_2:66400774-66400793 | Msa1070360:CDS | 30.0% | |
| TCTCAATATACAAAACTCGA+TGG | - | chr7_2:66401178-66401197 | None:intergenic | 30.0% | |
| !!! | AATATTTTTTCTTGGAGGGT+AGG | - | chr7_2:66399212-66399231 | None:intergenic | 30.0% |
| ATATATAGGCCTAAAACCTT+TGG | - | chr7_2:66399294-66399313 | None:intergenic | 30.0% | |
| !! | TTCAAGTTGTGAAAAGTTTG+TGG | - | chr7_2:66399330-66399349 | None:intergenic | 30.0% |
| ! | CCAAAATGAAGAACTCATTT+TGG | - | chr7_2:66399362-66399381 | None:intergenic | 30.0% |
| ! | CCAAAATGAGTTCTTCATTT+TGG | + | chr7_2:66399359-66399378 | Msa1070360:exon | 30.0% |
| CATATCAAATACTTCAATGG+TGG | + | chr7_2:66399493-66399512 | Msa1070360:CDS | 30.0% | |
| TATACAAACATGGCCTAAAT+AGG | - | chr7_2:66399582-66399601 | None:intergenic | 30.0% | |
| !!! | ACTACTTTTTGTATAGGTAC+TGG | + | chr7_2:66399710-66399729 | Msa1070360:intron | 30.0% |
| TCTTTATGTTCATACTGAAG+TGG | - | chr7_2:66399766-66399785 | None:intergenic | 30.0% | |
| CTTCAGTATGAACATAAAGA+TGG | + | chr7_2:66399766-66399785 | Msa1070360:CDS | 30.0% | |
| TTACAAACAAATGTGTTCAC+TGG | + | chr7_2:66399985-66400004 | Msa1070360:CDS | 30.0% | |
| AAGAACAAAGGATCTTTCTT+TGG | + | chr7_2:66400022-66400041 | Msa1070360:CDS | 30.0% | |
| TTCACAGATACTCTATTCTA+TGG | + | chr7_2:66400064-66400083 | Msa1070360:CDS | 30.0% | |
| AGTTAAGTACTTACACAATC+TGG | - | chr7_2:66400098-66400117 | None:intergenic | 30.0% | |
| GTTAAAGATTAGGTGACTAT+TGG | - | chr7_2:66400132-66400151 | None:intergenic | 30.0% | |
| ! | ATCTTCATTGGTTGGTTAAA+TGG | - | chr7_2:66400666-66400685 | None:intergenic | 30.0% |
| TGTTGTATATCTTCATTGGT+TGG | - | chr7_2:66400674-66400693 | None:intergenic | 30.0% | |
| TTTATGGAATGCAGATGATT+GGG | + | chr7_2:66400695-66400714 | Msa1070360:CDS | 30.0% | |
| TACAAAAGTTTCCACATTGA+TGG | + | chr7_2:66400774-66400793 | Msa1070360:CDS | 30.0% | |
| TCTCAATATACAAAACTCGA+TGG | - | chr7_2:66401178-66401197 | None:intergenic | 30.0% | |
| TAAAGAAAGAGAGAGGAACA+TGG | + | chr7_2:66399252-66399271 | Msa1070360:five_prime_UTR | 35.0% | |
| AAAGAAAGAGAGAGGAACAT+GGG | + | chr7_2:66399253-66399272 | Msa1070360:five_prime_UTR | 35.0% | |
| ! | GTCTATAACCCTTTTACCAA+AGG | + | chr7_2:66399275-66399294 | Msa1070360:five_prime_UTR | 35.0% |
| ! | ACCCTTTTACCAAAGGTTTT+AGG | + | chr7_2:66399282-66399301 | Msa1070360:five_prime_UTR | 35.0% |
| GCCTAAAACCTTTGGTAAAA+GGG | - | chr7_2:66399286-66399305 | None:intergenic | 35.0% | |
| GCTAAGACTTGGGTATATAT+AGG | - | chr7_2:66399308-66399327 | None:intergenic | 35.0% | |
| AAAGTTTGTGGCTAAGACTT+GGG | - | chr7_2:66399318-66399337 | None:intergenic | 35.0% | |
| AAAAGTTTGTGGCTAAGACT+TGG | - | chr7_2:66399319-66399338 | None:intergenic | 35.0% | |
| CAGAAACTATTACCCAACTT+GGG | + | chr7_2:66399462-66399481 | Msa1070360:CDS | 35.0% | |
| TATGATCAAAAGCCCAAGTT+GGG | - | chr7_2:66399477-66399496 | None:intergenic | 35.0% | |
| ATATGATCAAAAGCCCAAGT+TGG | - | chr7_2:66399478-66399497 | None:intergenic | 35.0% | |
| CTTCATCTTGATAAGTACAC+TGG | + | chr7_2:66399529-66399548 | Msa1070360:CDS | 35.0% | |
| TCCAAAGGATCATACTTGTT+TGG | + | chr7_2:66399740-66399759 | Msa1070360:CDS | 35.0% | |
| ATGAACATAAAGATGGTTCC+TGG | + | chr7_2:66399773-66399792 | Msa1070360:CDS | 35.0% | |
| GACAAGGTAACAAAGAACAA+AGG | + | chr7_2:66400010-66400029 | Msa1070360:CDS | 35.0% | |
| !! | TCTTTGGTTTGATCCAACAA+AGG | + | chr7_2:66400038-66400057 | Msa1070360:CDS | 35.0% |
| TATCTGTGAAACTCCTTTGT+TGG | - | chr7_2:66400054-66400073 | None:intergenic | 35.0% | |
| ! | GTGTAATGGAATGGTGAAAA+GGG | - | chr7_2:66400166-66400185 | None:intergenic | 35.0% |
| ! | TGTGTAATGGAATGGTGAAA+AGG | - | chr7_2:66400167-66400186 | None:intergenic | 35.0% |
| ! | TAGATTTAGTGGGTGTGTAA+TGG | - | chr7_2:66400180-66400199 | None:intergenic | 35.0% |
| AAAGAGGAGCTAGATTTAGT+GGG | - | chr7_2:66400190-66400209 | None:intergenic | 35.0% | |
| AAAAGAGGAGCTAGATTTAG+TGG | - | chr7_2:66400191-66400210 | None:intergenic | 35.0% | |
| TTGTAGATGATGTACCAATC+AGG | + | chr7_2:66400604-66400623 | Msa1070360:CDS | 35.0% | |
| TGTAGATGATGTACCAATCA+GGG | + | chr7_2:66400605-66400624 | Msa1070360:CDS | 35.0% | |
| GTTTATGGAATGCAGATGAT+TGG | + | chr7_2:66400694-66400713 | Msa1070360:CDS | 35.0% | |
| !! | GTGGATTAGAGAAAACTGAT+TGG | + | chr7_2:66400727-66400746 | Msa1070360:CDS | 35.0% |
| ATGATTCACAACCATCAATG+TGG | - | chr7_2:66400788-66400807 | None:intergenic | 35.0% | |
| AAAACTCGATGGAACAATAG+TGG | - | chr7_2:66401167-66401186 | None:intergenic | 35.0% | |
| TAAAGAAAGAGAGAGGAACA+TGG | + | chr7_2:66399252-66399271 | Msa1070360:five_prime_UTR | 35.0% | |
| AAAGAAAGAGAGAGGAACAT+GGG | + | chr7_2:66399253-66399272 | Msa1070360:five_prime_UTR | 35.0% | |
| ! | GTCTATAACCCTTTTACCAA+AGG | + | chr7_2:66399275-66399294 | Msa1070360:five_prime_UTR | 35.0% |
| ! | ACCCTTTTACCAAAGGTTTT+AGG | + | chr7_2:66399282-66399301 | Msa1070360:five_prime_UTR | 35.0% |
| GCCTAAAACCTTTGGTAAAA+GGG | - | chr7_2:66399286-66399305 | None:intergenic | 35.0% | |
| GCTAAGACTTGGGTATATAT+AGG | - | chr7_2:66399308-66399327 | None:intergenic | 35.0% | |
| AAAGTTTGTGGCTAAGACTT+GGG | - | chr7_2:66399318-66399337 | None:intergenic | 35.0% | |
| AAAAGTTTGTGGCTAAGACT+TGG | - | chr7_2:66399319-66399338 | None:intergenic | 35.0% | |
| CAGAAACTATTACCCAACTT+GGG | + | chr7_2:66399462-66399481 | Msa1070360:CDS | 35.0% | |
| TATGATCAAAAGCCCAAGTT+GGG | - | chr7_2:66399477-66399496 | None:intergenic | 35.0% | |
| ATATGATCAAAAGCCCAAGT+TGG | - | chr7_2:66399478-66399497 | None:intergenic | 35.0% | |
| CTTCATCTTGATAAGTACAC+TGG | + | chr7_2:66399529-66399548 | Msa1070360:CDS | 35.0% | |
| TCCAAAGGATCATACTTGTT+TGG | + | chr7_2:66399740-66399759 | Msa1070360:CDS | 35.0% | |
| ATGAACATAAAGATGGTTCC+TGG | + | chr7_2:66399773-66399792 | Msa1070360:CDS | 35.0% | |
| GACAAGGTAACAAAGAACAA+AGG | + | chr7_2:66400010-66400029 | Msa1070360:CDS | 35.0% | |
| !! | TCTTTGGTTTGATCCAACAA+AGG | + | chr7_2:66400038-66400057 | Msa1070360:CDS | 35.0% |
| TATCTGTGAAACTCCTTTGT+TGG | - | chr7_2:66400054-66400073 | None:intergenic | 35.0% | |
| ! | GTGTAATGGAATGGTGAAAA+GGG | - | chr7_2:66400166-66400185 | None:intergenic | 35.0% |
| ! | TGTGTAATGGAATGGTGAAA+AGG | - | chr7_2:66400167-66400186 | None:intergenic | 35.0% |
| ! | TAGATTTAGTGGGTGTGTAA+TGG | - | chr7_2:66400180-66400199 | None:intergenic | 35.0% |
| AAAGAGGAGCTAGATTTAGT+GGG | - | chr7_2:66400190-66400209 | None:intergenic | 35.0% | |
| AAAAGAGGAGCTAGATTTAG+TGG | - | chr7_2:66400191-66400210 | None:intergenic | 35.0% | |
| TTGTAGATGATGTACCAATC+AGG | + | chr7_2:66400604-66400623 | Msa1070360:CDS | 35.0% | |
| TGTAGATGATGTACCAATCA+GGG | + | chr7_2:66400605-66400624 | Msa1070360:CDS | 35.0% | |
| GTTTATGGAATGCAGATGAT+TGG | + | chr7_2:66400694-66400713 | Msa1070360:CDS | 35.0% | |
| !! | GTGGATTAGAGAAAACTGAT+TGG | + | chr7_2:66400727-66400746 | Msa1070360:CDS | 35.0% |
| ATGATTCACAACCATCAATG+TGG | - | chr7_2:66400788-66400807 | None:intergenic | 35.0% | |
| AAAACTCGATGGAACAATAG+TGG | - | chr7_2:66401167-66401186 | None:intergenic | 35.0% | |
| !!! | ATTTTTTCTTGGAGGGTAGG+AGG | - | chr7_2:66399209-66399228 | None:intergenic | 40.0% |
| GGCCTAAAACCTTTGGTAAA+AGG | - | chr7_2:66399287-66399306 | None:intergenic | 40.0% | |
| ! | AAGCCAGTTGATGTACCATT+TGG | + | chr7_2:66399439-66399458 | Msa1070360:CDS | 40.0% |
| GGGTAATAGTTTCTGCCAAA+TGG | - | chr7_2:66399457-66399476 | None:intergenic | 40.0% | |
| GCAGAAACTATTACCCAACT+TGG | + | chr7_2:66399461-66399480 | Msa1070360:CDS | 40.0% | |
| GCCAAACAAGTATGATCCTT+TGG | - | chr7_2:66399744-66399763 | None:intergenic | 40.0% | |
| CAAACAAATGTGTTCACTGG+TGG | + | chr7_2:66399988-66400007 | Msa1070360:CDS | 40.0% | |
| ! | TTAGTGGGTGTGTAATGGAA+TGG | - | chr7_2:66400175-66400194 | None:intergenic | 40.0% |
| TTCAAGAACAGCAAGGACTT+GGG | + | chr7_2:66400630-66400649 | Msa1070360:CDS | 40.0% | |
| !! | TCAAAAGCACCATTCATAGC+AGG | + | chr7_2:66400750-66400769 | Msa1070360:CDS | 40.0% |
| ! | CTTTTGTAGCCTGCTATGAA+TGG | - | chr7_2:66400762-66400781 | None:intergenic | 40.0% |
| AACACAAGGCAAAAGATGGT+GGG | + | chr7_2:66400830-66400849 | Msa1070360:CDS | 40.0% | |
| GCATCAAGATCACGAAATTC+AGG | - | chr7_2:66400861-66400880 | None:intergenic | 40.0% | |
| TTGCATTCAGGTGGAATTTG+AGG | - | chr7_2:66400960-66400979 | None:intergenic | 40.0% | |
| !!! | ATTTTTTCTTGGAGGGTAGG+AGG | - | chr7_2:66399209-66399228 | None:intergenic | 40.0% |
| GGCCTAAAACCTTTGGTAAA+AGG | - | chr7_2:66399287-66399306 | None:intergenic | 40.0% | |
| ! | AAGCCAGTTGATGTACCATT+TGG | + | chr7_2:66399439-66399458 | Msa1070360:CDS | 40.0% |
| GGGTAATAGTTTCTGCCAAA+TGG | - | chr7_2:66399457-66399476 | None:intergenic | 40.0% | |
| GCAGAAACTATTACCCAACT+TGG | + | chr7_2:66399461-66399480 | Msa1070360:CDS | 40.0% | |
| GCCAAACAAGTATGATCCTT+TGG | - | chr7_2:66399744-66399763 | None:intergenic | 40.0% | |
| CAAACAAATGTGTTCACTGG+TGG | + | chr7_2:66399988-66400007 | Msa1070360:CDS | 40.0% | |
| ! | TTAGTGGGTGTGTAATGGAA+TGG | - | chr7_2:66400175-66400194 | None:intergenic | 40.0% |
| TTCAAGAACAGCAAGGACTT+GGG | + | chr7_2:66400630-66400649 | Msa1070360:CDS | 40.0% | |
| !! | TCAAAAGCACCATTCATAGC+AGG | + | chr7_2:66400750-66400769 | Msa1070360:CDS | 40.0% |
| ! | CTTTTGTAGCCTGCTATGAA+TGG | - | chr7_2:66400762-66400781 | None:intergenic | 40.0% |
| AACACAAGGCAAAAGATGGT+GGG | + | chr7_2:66400830-66400849 | Msa1070360:CDS | 40.0% | |
| GCATCAAGATCACGAAATTC+AGG | - | chr7_2:66400861-66400880 | None:intergenic | 40.0% | |
| TTGCATTCAGGTGGAATTTG+AGG | - | chr7_2:66400960-66400979 | None:intergenic | 40.0% | |
| CTGCCAAATGGTACATCAAC+TGG | - | chr7_2:66399445-66399464 | None:intergenic | 45.0% | |
| !!! | GGTACTGGTTTTCAGTCCAA+AGG | + | chr7_2:66399725-66399744 | Msa1070360:intron | 45.0% |
| ! | AATGTGTTCACTGGTGGACA+AGG | + | chr7_2:66399994-66400013 | Msa1070360:CDS | 45.0% |
| !! | TGCAACTATGATGGGTTTGC+AGG | + | chr7_2:66400577-66400596 | Msa1070360:intron | 45.0% |
| CTGTTCTTGAACACCCTGAT+TGG | - | chr7_2:66400621-66400640 | None:intergenic | 45.0% | |
| GTTCAAGAACAGCAAGGACT+TGG | + | chr7_2:66400629-66400648 | Msa1070360:CDS | 45.0% | |
| ATGCAGATGATTGGGCAACA+AGG | + | chr7_2:66400703-66400722 | Msa1070360:CDS | 45.0% | |
| TGCAGATGATTGGGCAACAA+GGG | + | chr7_2:66400704-66400723 | Msa1070360:CDS | 45.0% | |
| GCCAAATTCTGTGCAACACA+AGG | + | chr7_2:66400816-66400835 | Msa1070360:CDS | 45.0% | |
| GCCTTGTGTTGCACAGAATT+TGG | - | chr7_2:66400820-66400839 | None:intergenic | 45.0% | |
| GTGCAACACAAGGCAAAAGA+TGG | + | chr7_2:66400826-66400845 | Msa1070360:CDS | 45.0% | |
| CAACACAAGGCAAAAGATGG+TGG | + | chr7_2:66400829-66400848 | Msa1070360:CDS | 45.0% | |
| GTGATCTTGATGCTGCTCAA+TGG | + | chr7_2:66400868-66400887 | Msa1070360:CDS | 45.0% | |
| TCAATGGCGTAGGCTAAGAT+GGG | + | chr7_2:66400884-66400903 | Msa1070360:CDS | 45.0% | |
| ! | TCACGGTCTCTTTTGCATTC+AGG | - | chr7_2:66400972-66400991 | None:intergenic | 45.0% |
| TGCGTGACAACAATGTGACA+TGG | - | chr7_2:66401077-66401096 | None:intergenic | 45.0% | |
| CTGCCAAATGGTACATCAAC+TGG | - | chr7_2:66399445-66399464 | None:intergenic | 45.0% | |
| !!! | GGTACTGGTTTTCAGTCCAA+AGG | + | chr7_2:66399725-66399744 | Msa1070360:intron | 45.0% |
| ! | AATGTGTTCACTGGTGGACA+AGG | + | chr7_2:66399994-66400013 | Msa1070360:CDS | 45.0% |
| !! | TGCAACTATGATGGGTTTGC+AGG | + | chr7_2:66400577-66400596 | Msa1070360:intron | 45.0% |
| CTGTTCTTGAACACCCTGAT+TGG | - | chr7_2:66400621-66400640 | None:intergenic | 45.0% | |
| GTTCAAGAACAGCAAGGACT+TGG | + | chr7_2:66400629-66400648 | Msa1070360:CDS | 45.0% | |
| ATGCAGATGATTGGGCAACA+AGG | + | chr7_2:66400703-66400722 | Msa1070360:CDS | 45.0% | |
| TGCAGATGATTGGGCAACAA+GGG | + | chr7_2:66400704-66400723 | Msa1070360:CDS | 45.0% | |
| GCCAAATTCTGTGCAACACA+AGG | + | chr7_2:66400816-66400835 | Msa1070360:CDS | 45.0% | |
| GCCTTGTGTTGCACAGAATT+TGG | - | chr7_2:66400820-66400839 | None:intergenic | 45.0% | |
| GTGCAACACAAGGCAAAAGA+TGG | + | chr7_2:66400826-66400845 | Msa1070360:CDS | 45.0% | |
| CAACACAAGGCAAAAGATGG+TGG | + | chr7_2:66400829-66400848 | Msa1070360:CDS | 45.0% | |
| GTGATCTTGATGCTGCTCAA+TGG | + | chr7_2:66400868-66400887 | Msa1070360:CDS | 45.0% | |
| TCAATGGCGTAGGCTAAGAT+GGG | + | chr7_2:66400884-66400903 | Msa1070360:CDS | 45.0% | |
| ! | TCACGGTCTCTTTTGCATTC+AGG | - | chr7_2:66400972-66400991 | None:intergenic | 45.0% |
| TGCGTGACAACAATGTGACA+TGG | - | chr7_2:66401077-66401096 | None:intergenic | 45.0% | |
| ! | ACATCAACTGGCTTCCTTGG+AGG | - | chr7_2:66399433-66399452 | None:intergenic | 50.0% |
| ! | GGTACATCAACTGGCTTCCT+TGG | - | chr7_2:66399436-66399455 | None:intergenic | 50.0% |
| ATGGTTCCTGGTGATTCAGC+TGG | + | chr7_2:66399785-66399804 | Msa1070360:CDS | 50.0% | |
| ACTGTTCCAGCTGAATCACC+AGG | - | chr7_2:66399794-66399813 | None:intergenic | 50.0% | |
| GAGTTCTTGGGGAACAGAAC+AGG | + | chr7_2:66399949-66399968 | Msa1070360:CDS | 50.0% | |
| ! | CAGGGTGTTCAAGAACAGCA+AGG | + | chr7_2:66400623-66400642 | Msa1070360:CDS | 50.0% |
| GCAGATGATTGGGCAACAAG+GGG | + | chr7_2:66400705-66400724 | Msa1070360:CDS | 50.0% | |
| TTGATGCTGCTCAATGGCGT+AGG | + | chr7_2:66400874-66400893 | Msa1070360:CDS | 50.0% | |
| CTCAATGGCGTAGGCTAAGA+TGG | + | chr7_2:66400883-66400902 | Msa1070360:CDS | 50.0% | |
| ! | CGGTCTCTTTTGCATTCAGG+TGG | - | chr7_2:66400969-66400988 | None:intergenic | 50.0% |
| ! | ACATCAACTGGCTTCCTTGG+AGG | - | chr7_2:66399433-66399452 | None:intergenic | 50.0% |
| ! | GGTACATCAACTGGCTTCCT+TGG | - | chr7_2:66399436-66399455 | None:intergenic | 50.0% |
| ATGGTTCCTGGTGATTCAGC+TGG | + | chr7_2:66399785-66399804 | Msa1070360:CDS | 50.0% | |
| ACTGTTCCAGCTGAATCACC+AGG | - | chr7_2:66399794-66399813 | None:intergenic | 50.0% | |
| GAGTTCTTGGGGAACAGAAC+AGG | + | chr7_2:66399949-66399968 | Msa1070360:CDS | 50.0% | |
| ! | CAGGGTGTTCAAGAACAGCA+AGG | + | chr7_2:66400623-66400642 | Msa1070360:CDS | 50.0% |
| GCAGATGATTGGGCAACAAG+GGG | + | chr7_2:66400705-66400724 | Msa1070360:CDS | 50.0% | |
| TTGATGCTGCTCAATGGCGT+AGG | + | chr7_2:66400874-66400893 | Msa1070360:CDS | 50.0% | |
| CTCAATGGCGTAGGCTAAGA+TGG | + | chr7_2:66400883-66400902 | Msa1070360:CDS | 50.0% | |
| ! | CGGTCTCTTTTGCATTCAGG+TGG | - | chr7_2:66400969-66400988 | None:intergenic | 50.0% |
| CTTCACTCTGTGCTCCTCCA+AGG | + | chr7_2:66399416-66399435 | Msa1070360:CDS | 55.0% | |
| GATGATTGGGCAACAAGGGG+TGG | + | chr7_2:66400708-66400727 | Msa1070360:CDS | 55.0% | |
| CTTCACTCTGTGCTCCTCCA+AGG | + | chr7_2:66399416-66399435 | Msa1070360:CDS | 55.0% | |
| GATGATTGGGCAACAAGGGG+TGG | + | chr7_2:66400708-66400727 | Msa1070360:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 66399196 | 66401300 | 66399196 | ID=Msa1070360;Name=Msa1070360 |
| chr7_2 | mRNA | 66399196 | 66401300 | 66399196 | ID=Msa1070360-mRNA-1;Parent=Msa1070360;Name=Msa1070360-mRNA-1;_AED=0.33;_eAED=0.33;_QI=168|1|1|1|0.75|0.6|5|282|293 |
| chr7_2 | exon | 66399196 | 66399550 | 66399196 | ID=Msa1070360-mRNA-1:exon:14234;Parent=Msa1070360-mRNA-1 |
| chr7_2 | exon | 66399726 | 66399826 | 66399726 | ID=Msa1070360-mRNA-1:exon:14235;Parent=Msa1070360-mRNA-1 |
| chr7_2 | exon | 66399910 | 66400103 | 66399910 | ID=Msa1070360-mRNA-1:exon:14236;Parent=Msa1070360-mRNA-1 |
| chr7_2 | exon | 66400599 | 66401064 | 66400599 | ID=Msa1070360-mRNA-1:exon:14237;Parent=Msa1070360-mRNA-1 |
| chr7_2 | exon | 66401085 | 66401300 | 66401085 | ID=Msa1070360-mRNA-1:exon:14238;Parent=Msa1070360-mRNA-1 |
| chr7_2 | five_prime_UTR | 66399196 | 66399363 | 66399196 | ID=Msa1070360-mRNA-1:five_prime_utr;Parent=Msa1070360-mRNA-1 |
| chr7_2 | CDS | 66399364 | 66399550 | 66399364 | ID=Msa1070360-mRNA-1:cds;Parent=Msa1070360-mRNA-1 |
| chr7_2 | CDS | 66399726 | 66399826 | 66399726 | ID=Msa1070360-mRNA-1:cds;Parent=Msa1070360-mRNA-1 |
| chr7_2 | CDS | 66399910 | 66400103 | 66399910 | ID=Msa1070360-mRNA-1:cds;Parent=Msa1070360-mRNA-1 |
| chr7_2 | CDS | 66400599 | 66400998 | 66400599 | ID=Msa1070360-mRNA-1:cds;Parent=Msa1070360-mRNA-1 |
| chr7_2 | three_prime_UTR | 66400999 | 66401064 | 66400999 | ID=Msa1070360-mRNA-1:three_prime_utr;Parent=Msa1070360-mRNA-1 |
| chr7_2 | three_prime_UTR | 66401085 | 66401300 | 66401085 | ID=Msa1070360-mRNA-1:three_prime_utr;Parent=Msa1070360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
