Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1031180 | XP_003624550.1 | 98.976 | 293 | 3 | 0 | 1 | 293 | 1 | 293 | 0.0 | 610 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1031180 | sp|Q8LNZ5|XTHB_PHAAN | 84.983 | 293 | 44 | 0 | 1 | 293 | 1 | 293 | 0.0 | 548 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1031180 | Q2HRU5 | 98.976 | 293 | 3 | 0 | 1 | 293 | 1 | 293 | 0.0 | 610 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037180 | Msa1031180 | 0.817823 | 2.700192e-52 | -8.615850e-47 |
| Msa0044780 | Msa1031180 | -0.811966 | 5.374405e-51 | -8.615850e-47 |
| Msa0045810 | Msa1031180 | 0.814167 | 1.768405e-51 | -8.615850e-47 |
| Msa0092220 | Msa1031180 | 0.810477 | 1.130419e-50 | -8.615850e-47 |
| Msa0608820 | Msa1031180 | 0.802266 | 6.088269e-49 | -8.615850e-47 |
| Msa0610700 | Msa1031180 | -0.823734 | 1.180766e-53 | -8.615850e-47 |
| Msa0745140 | Msa1031180 | 0.827716 | 1.341392e-54 | -8.615850e-47 |
| Msa0776640 | Msa1031180 | 0.826843 | 2.171513e-54 | -8.615850e-47 |
| Msa0825920 | Msa1031180 | 0.825468 | 4.610562e-54 | -8.615850e-47 |
| Msa0139500 | Msa1031180 | 0.803141 | 4.016395e-49 | -8.615850e-47 |
| Msa0177320 | Msa1031180 | 0.807585 | 4.704670e-50 | -8.615850e-47 |
| Msa0207680 | Msa1031180 | 0.871065 | 9.078305e-67 | -8.615850e-47 |
| Msa0207690 | Msa1031180 | 0.804448 | 2.149663e-49 | -8.615850e-47 |
| Msa0209360 | Msa1031180 | 0.832335 | 1.002451e-55 | -8.615850e-47 |
| Msa0216340 | Msa1031180 | 0.823378 | 1.430311e-53 | -8.615850e-47 |
| Msa0226450 | Msa1031180 | -0.824503 | 7.791704e-54 | -8.615850e-47 |
| Msa0378310 | Msa1031180 | -0.805376 | 1.375600e-49 | -8.615850e-47 |
| Msa0380980 | Msa1031180 | 0.812360 | 4.409005e-51 | -8.615850e-47 |
| Msa0382860 | Msa1031180 | 0.837274 | 5.724075e-57 | -8.615850e-47 |
| Msa0386880 | Msa1031180 | 0.804758 | 1.852374e-49 | -8.615850e-47 |
| Msa0414250 | Msa1031180 | -0.805660 | 1.198919e-49 | -8.615850e-47 |
| Msa0432940 | Msa1031180 | 0.824221 | 9.075653e-54 | -8.615850e-47 |
| Msa0432970 | Msa1031180 | 0.829970 | 3.820140e-55 | -8.615850e-47 |
| Msa0436840 | Msa1031180 | 0.839455 | 1.568134e-57 | -8.615850e-47 |
| Msa0477030 | Msa1031180 | 0.829886 | 4.005412e-55 | -8.615850e-47 |
| Msa1012570 | Msa1031180 | 0.818340 | 2.062979e-52 | -8.615850e-47 |
| Msa1024570 | Msa1031180 | 0.843963 | 1.014018e-58 | -8.615850e-47 |
| Msa1031180 | Msa1063190 | 0.809834 | 1.555809e-50 | -8.615850e-47 |
| Msa1031180 | Msa1070360 | 0.959638 | 1.158956e-117 | -8.615850e-47 |
| Msa1031180 | Msa1088740 | -0.808166 | 3.539356e-50 | -8.615850e-47 |
| Msa1031180 | Msa1119430 | 0.987231 | 1.611772e-169 | -8.615850e-47 |
| Msa1031180 | Msa1158200 | 0.943303 | 1.535350e-102 | -8.615850e-47 |
| Msa1031180 | Msa1158210 | 0.800131 | 1.664365e-48 | -8.615850e-47 |
| Msa1031180 | Msa1190350 | -0.820132 | 8.063166e-53 | -8.615850e-47 |
| Msa1031180 | Msa1219540 | 0.833447 | 5.305012e-56 | -8.615850e-47 |
| Msa1031180 | Msa1236860 | -0.801603 | 8.330136e-49 | -8.615850e-47 |
| Msa1031180 | Msa1317240 | -0.810315 | 1.225433e-50 | -8.615850e-47 |
| Msa1031180 | Msa1333210 | 0.843862 | 1.079468e-58 | -8.615850e-47 |
| Msa1031180 | Msa1333240 | 0.823068 | 1.690000e-53 | -8.615850e-47 |
| Msa1031180 | Msa1337450 | 0.803519 | 3.354422e-49 | -8.615850e-47 |
| Msa1031180 | Msa1368390 | 0.803529 | 3.338209e-49 | -8.615850e-47 |
| Msa1031180 | Msa1371300 | 0.831442 | 1.665580e-55 | -8.615850e-47 |
| Msa1031180 | Msa1375000 | -0.814182 | 1.754499e-51 | -8.615850e-47 |
| Msa1031180 | Msa1383820 | 0.802698 | 4.958250e-49 | -8.615850e-47 |
| Msa1031180 | Msa1401130 | 0.800334 | 1.513183e-48 | -8.615850e-47 |
| Msa1031180 | Msa1457770 | 0.810698 | 1.013006e-50 | -8.615850e-47 |
| Msa0256540 | Msa1031180 | 0.836643 | 8.297019e-57 | -8.615850e-47 |
| Msa0295680 | Msa1031180 | 0.838655 | 2.527067e-57 | -8.615850e-47 |
| Msa0317870 | Msa1031180 | 0.818273 | 2.136785e-52 | -8.615850e-47 |
| Msa0319500 | Msa1031180 | 0.842540 | 2.430222e-58 | -8.615850e-47 |
| Msa0334320 | Msa1031180 | 0.836591 | 8.552415e-57 | -8.615850e-47 |
| Msa0523110 | Msa1031180 | 0.800761 | 1.238364e-48 | -8.615850e-47 |
| Msa0576180 | Msa1031180 | 0.817892 | 2.604326e-52 | -8.615850e-47 |
| Msa0597700 | Msa1031180 | 0.855896 | 4.636173e-62 | -8.615850e-47 |
| Msa0865420 | Msa1031180 | 0.817573 | 3.075328e-52 | -8.615850e-47 |
| Msa0887100 | Msa1031180 | -0.829188 | 5.919868e-55 | -8.615850e-47 |
| Msa0913140 | Msa1031180 | -0.836905 | 7.116056e-57 | -8.615850e-47 |
| Msa0930210 | Msa1031180 | 0.819786 | 9.673600e-53 | -8.615850e-47 |
| Msa0932140 | Msa1031180 | 0.807386 | 5.185198e-50 | -8.615850e-47 |
| Msa0950470 | Msa1031180 | -0.828144 | 1.058132e-54 | -8.615850e-47 |
| Msa0950570 | Msa1031180 | -0.828117 | 1.074488e-54 | -8.615850e-47 |
| Msa0967780 | Msa1031180 | 0.807749 | 4.341497e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1031180 | MtrunA17_Chr7g0252631 | 98.976 | 293 | 3 | 0 | 1 | 293 | 1 | 293 | 0.0 | 610 |
| Msa1031180 | MtrunA17_Chr7g0252621 | 97.611 | 293 | 7 | 0 | 1 | 293 | 1 | 293 | 0.0 | 602 |
| Msa1031180 | MtrunA17_Chr7g0252601 | 85.666 | 293 | 42 | 0 | 1 | 293 | 1 | 293 | 0.0 | 545 |
| Msa1031180 | MtrunA17_Chr6g0461731 | 81.911 | 293 | 53 | 0 | 1 | 293 | 24 | 316 | 0.0 | 521 |
| Msa1031180 | MtrunA17_Chr6g0461761 | 83.275 | 287 | 47 | 1 | 8 | 293 | 7 | 293 | 0.0 | 515 |
| Msa1031180 | MtrunA17_Chr3g0122031 | 53.082 | 292 | 125 | 3 | 1 | 291 | 1 | 281 | 6.97e-104 | 304 |
| Msa1031180 | MtrunA17_Chr3g0122021 | 52.740 | 292 | 126 | 3 | 1 | 291 | 1 | 281 | 9.77e-104 | 304 |
| Msa1031180 | MtrunA17_Chr4g0054431 | 52.330 | 279 | 126 | 3 | 10 | 287 | 15 | 287 | 2.11e-103 | 303 |
| Msa1031180 | MtrunA17_Chr2g0323161 | 50.172 | 291 | 124 | 4 | 7 | 289 | 11 | 288 | 3.45e-103 | 303 |
| Msa1031180 | MtrunA17_Chr4g0054451 | 54.864 | 257 | 114 | 2 | 32 | 287 | 34 | 289 | 1.54e-102 | 301 |
| Msa1031180 | MtrunA17_Chr4g0072611 | 53.287 | 289 | 121 | 4 | 3 | 288 | 4 | 281 | 4.60e-102 | 300 |
| Msa1031180 | MtrunA17_Chr8g0377841 | 52.817 | 284 | 118 | 5 | 5 | 287 | 13 | 281 | 3.35e-101 | 297 |
| Msa1031180 | MtrunA17_Chr4g0023961 | 49.653 | 288 | 125 | 4 | 8 | 287 | 13 | 288 | 1.02e-100 | 296 |
| Msa1031180 | MtrunA17_Chr7g0258911 | 52.414 | 290 | 124 | 4 | 1 | 287 | 1 | 279 | 6.64e-98 | 289 |
| Msa1031180 | MtrunA17_Chr4g0072671 | 55.303 | 264 | 106 | 3 | 32 | 287 | 26 | 285 | 3.17e-97 | 288 |
| Msa1031180 | MtrunA17_Chr1g0206681 | 48.239 | 284 | 143 | 3 | 8 | 287 | 8 | 291 | 1.63e-94 | 281 |
| Msa1031180 | MtrunA17_Chr6g0486581 | 48.864 | 264 | 129 | 4 | 28 | 287 | 22 | 283 | 1.24e-93 | 278 |
| Msa1031180 | MtrunA17_Chr1g0206081 | 48.621 | 290 | 145 | 2 | 2 | 287 | 5 | 294 | 1.89e-93 | 278 |
| Msa1031180 | MtrunA17_Chr4g0071341 | 52.490 | 261 | 115 | 3 | 32 | 287 | 25 | 281 | 2.80e-93 | 277 |
| Msa1031180 | MtrunA17_Chr8g0389641 | 47.782 | 293 | 104 | 4 | 1 | 291 | 1 | 246 | 2.73e-92 | 273 |
| Msa1031180 | MtrunA17_Chr2g0299061 | 52.075 | 265 | 114 | 3 | 32 | 287 | 26 | 286 | 2.57e-91 | 273 |
| Msa1031180 | MtrunA17_Chr4g0072601 | 46.599 | 294 | 139 | 5 | 1 | 287 | 1 | 283 | 1.50e-90 | 271 |
| Msa1031180 | MtrunA17_Chr4g0072681 | 54.202 | 238 | 104 | 2 | 57 | 289 | 8 | 245 | 7.01e-86 | 257 |
| Msa1031180 | MtrunA17_Chr5g0443391 | 49.378 | 241 | 115 | 3 | 50 | 289 | 46 | 280 | 5.26e-81 | 246 |
| Msa1031180 | MtrunA17_Chr3g0096651 | 47.177 | 248 | 118 | 3 | 51 | 293 | 49 | 288 | 2.99e-80 | 244 |
| Msa1031180 | MtrunA17_Chr8g0340001 | 50.222 | 225 | 111 | 1 | 63 | 287 | 8 | 231 | 1.17e-79 | 241 |
| Msa1031180 | MtrunA17_Chr8g0390201 | 51.282 | 195 | 91 | 3 | 97 | 287 | 15 | 209 | 1.68e-68 | 212 |
| Msa1031180 | MtrunA17_Chr2g0303861 | 42.545 | 275 | 149 | 7 | 8 | 277 | 1 | 271 | 5.30e-66 | 207 |
| Msa1031180 | MtrunA17_Chr2g0303721 | 40.636 | 283 | 151 | 7 | 7 | 288 | 5 | 271 | 3.02e-64 | 203 |
| Msa1031180 | MtrunA17_Chr7g0235541 | 47.907 | 215 | 100 | 5 | 79 | 288 | 1 | 208 | 2.79e-63 | 198 |
| Msa1031180 | MtrunA17_Chr5g0410621 | 37.546 | 269 | 156 | 5 | 30 | 288 | 40 | 306 | 6.14e-60 | 194 |
| Msa1031180 | MtrunA17_Chr4g0028221 | 35.762 | 302 | 162 | 8 | 5 | 287 | 16 | 304 | 8.38e-60 | 192 |
| Msa1031180 | MtrunA17_Chr8g0365231 | 34.551 | 301 | 174 | 6 | 8 | 288 | 14 | 311 | 4.56e-59 | 191 |
| Msa1031180 | MtrunA17_Chr7g0264731 | 37.410 | 278 | 146 | 7 | 31 | 287 | 21 | 291 | 3.88e-58 | 188 |
| Msa1031180 | MtrunA17_Chr1g0180451 | 38.545 | 275 | 148 | 8 | 23 | 287 | 31 | 294 | 6.79e-58 | 187 |
| Msa1031180 | MtrunA17_Chr1g0161951 | 38.321 | 274 | 158 | 5 | 24 | 290 | 25 | 294 | 2.55e-57 | 187 |
| Msa1031180 | MtrunA17_Chr2g0327411 | 37.818 | 275 | 151 | 7 | 23 | 287 | 45 | 309 | 7.22e-57 | 185 |
| Msa1031180 | MtrunA17_Chr8g0375981 | 36.177 | 293 | 173 | 6 | 1 | 287 | 6 | 290 | 2.74e-56 | 184 |
| Msa1031180 | MtrunA17_Chr8g0382041 | 36.431 | 269 | 154 | 6 | 30 | 287 | 32 | 294 | 3.80e-55 | 181 |
| Msa1031180 | MtrunA17_Chr4g0072641 | 51.969 | 127 | 45 | 3 | 162 | 287 | 37 | 148 | 4.65e-37 | 129 |
| Msa1031180 | MtrunA17_Chr8g0374231 | 45.545 | 101 | 54 | 1 | 188 | 287 | 1 | 101 | 3.05e-25 | 97.1 |
| Msa1031180 | MtrunA17_Chr8g0350711 | 33.908 | 174 | 107 | 4 | 54 | 225 | 54 | 221 | 6.50e-15 | 72.4 |
| Msa1031180 | MtrunA17_Chr8g0390181 | 44.444 | 72 | 38 | 1 | 28 | 99 | 24 | 93 | 5.22e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1031180 | AT5G13870.2 | 80.488 | 287 | 56 | 0 | 7 | 293 | 7 | 293 | 0.0 | 508 |
| Msa1031180 | AT5G13870.1 | 80.488 | 287 | 56 | 0 | 7 | 293 | 7 | 293 | 0.0 | 508 |
| Msa1031180 | AT5G13870.3 | 80.488 | 287 | 56 | 0 | 7 | 293 | 7 | 293 | 0.0 | 508 |
| Msa1031180 | AT2G06850.1 | 76.792 | 293 | 67 | 1 | 1 | 292 | 3 | 295 | 5.95e-177 | 490 |
| Msa1031180 | AT2G06850.2 | 80.519 | 231 | 45 | 0 | 62 | 292 | 5 | 235 | 2.41e-147 | 413 |
| Msa1031180 | AT5G65730.1 | 51.590 | 283 | 133 | 3 | 7 | 288 | 12 | 291 | 7.96e-106 | 310 |
| Msa1031180 | AT3G23730.1 | 56.061 | 264 | 112 | 2 | 32 | 291 | 27 | 290 | 9.68e-106 | 310 |
| Msa1031180 | AT4G14130.1 | 57.422 | 256 | 104 | 3 | 39 | 291 | 35 | 288 | 5.08e-103 | 303 |
| Msa1031180 | AT4G37800.1 | 50.704 | 284 | 133 | 3 | 5 | 287 | 12 | 289 | 3.75e-102 | 300 |
| Msa1031180 | AT4G03210.1 | 49.828 | 291 | 137 | 3 | 5 | 293 | 7 | 290 | 1.88e-101 | 299 |
| Msa1031180 | AT5G57550.1 | 50.173 | 289 | 137 | 3 | 1 | 288 | 1 | 283 | 1.81e-98 | 291 |
| Msa1031180 | AT5G57560.1 | 51.220 | 287 | 121 | 4 | 8 | 287 | 7 | 281 | 9.17e-98 | 289 |
| Msa1031180 | AT4G30270.1 | 51.408 | 284 | 111 | 4 | 5 | 287 | 8 | 265 | 2.08e-95 | 283 |
| Msa1031180 | AT1G11545.1 | 50.704 | 284 | 130 | 4 | 10 | 287 | 20 | 299 | 4.64e-95 | 283 |
| Msa1031180 | AT5G57530.1 | 53.516 | 256 | 111 | 4 | 39 | 290 | 34 | 285 | 2.62e-94 | 280 |
| Msa1031180 | AT4G25810.1 | 51.056 | 284 | 124 | 5 | 10 | 287 | 9 | 283 | 3.52e-94 | 280 |
| Msa1031180 | AT5G57540.1 | 52.091 | 263 | 118 | 4 | 32 | 290 | 26 | 284 | 2.17e-93 | 278 |
| Msa1031180 | AT4G03210.2 | 54.978 | 231 | 102 | 1 | 65 | 293 | 32 | 262 | 4.38e-93 | 276 |
| Msa1031180 | AT4G13090.1 | 48.944 | 284 | 138 | 4 | 8 | 288 | 10 | 289 | 5.23e-92 | 275 |
| Msa1031180 | AT5G48070.1 | 53.750 | 240 | 105 | 3 | 49 | 287 | 47 | 281 | 1.23e-89 | 268 |
| Msa1031180 | AT2G14620.1 | 45.775 | 284 | 150 | 3 | 8 | 287 | 11 | 294 | 2.28e-88 | 266 |
| Msa1031180 | AT4G28850.1 | 45.172 | 290 | 148 | 5 | 7 | 291 | 8 | 291 | 2.84e-88 | 265 |
| Msa1031180 | AT2G18800.1 | 48.162 | 272 | 122 | 4 | 32 | 287 | 28 | 296 | 4.97e-88 | 265 |
| Msa1031180 | AT4G25820.1 | 51.575 | 254 | 115 | 3 | 39 | 288 | 37 | 286 | 2.18e-87 | 263 |
| Msa1031180 | AT4G13080.1 | 46.718 | 259 | 135 | 3 | 30 | 288 | 37 | 292 | 1.82e-85 | 258 |
| Msa1031180 | AT3G25050.1 | 47.126 | 261 | 131 | 4 | 30 | 287 | 33 | 289 | 2.64e-85 | 258 |
| Msa1031180 | AT4G30290.1 | 53.097 | 226 | 100 | 3 | 63 | 287 | 56 | 276 | 2.44e-82 | 249 |
| Msa1031180 | AT1G65310.1 | 53.540 | 226 | 99 | 3 | 63 | 287 | 61 | 281 | 4.19e-82 | 249 |
| Msa1031180 | AT1G65310.2 | 53.540 | 226 | 99 | 3 | 63 | 287 | 83 | 303 | 5.44e-82 | 249 |
| Msa1031180 | AT4G30280.1 | 52.655 | 226 | 101 | 3 | 63 | 287 | 61 | 281 | 2.03e-81 | 247 |
| Msa1031180 | AT2G14620.2 | 48.739 | 238 | 120 | 2 | 52 | 287 | 7 | 244 | 3.75e-81 | 246 |
| Msa1031180 | AT2G14620.3 | 51.142 | 219 | 105 | 2 | 71 | 287 | 15 | 233 | 3.51e-79 | 240 |
| Msa1031180 | AT3G44990.1 | 42.264 | 265 | 136 | 7 | 31 | 287 | 38 | 293 | 8.81e-62 | 197 |
| Msa1031180 | AT1G32170.1 | 41.079 | 241 | 134 | 4 | 54 | 287 | 54 | 293 | 1.52e-60 | 196 |
| Msa1031180 | AT3G48580.1 | 39.535 | 258 | 140 | 5 | 30 | 287 | 32 | 273 | 1.75e-58 | 189 |
| Msa1031180 | AT1G14720.1 | 35.862 | 290 | 177 | 5 | 5 | 287 | 3 | 290 | 5.33e-58 | 189 |
| Msa1031180 | AT2G36870.1 | 40.244 | 246 | 132 | 5 | 52 | 289 | 61 | 299 | 2.10e-56 | 184 |
| Msa1031180 | AT4G18990.1 | 38.735 | 253 | 134 | 5 | 54 | 287 | 62 | 312 | 8.14e-55 | 181 |
| Msa1031180 | AT2G01850.1 | 38.430 | 242 | 143 | 3 | 51 | 287 | 50 | 290 | 1.13e-53 | 178 |
| Msa1031180 | AT1G10550.1 | 36.364 | 253 | 142 | 6 | 51 | 287 | 60 | 309 | 8.94e-53 | 175 |
| Msa1031180 | AT3G48580.3 | 38.938 | 226 | 123 | 4 | 62 | 287 | 4 | 214 | 8.72e-51 | 167 |
| Msa1031180 | AT3G48580.2 | 34.496 | 258 | 133 | 6 | 30 | 287 | 32 | 253 | 4.39e-43 | 148 |
| Msa1031180 | AT4G18990.2 | 34.914 | 232 | 124 | 5 | 81 | 287 | 9 | 238 | 7.78e-43 | 148 |
| Msa1031180 | AT2G36870.2 | 44.915 | 118 | 57 | 2 | 52 | 161 | 61 | 178 | 3.16e-28 | 107 |
Find 78 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAAATGAGTTCTTCATTT+TGG | 0.129453 | 7_1:+65645020 | Msa1031180:exon |
| ATCTTCATTGGTTGGTTAAA+TGG | 0.164613 | 7_1:-65646318 | None:intergenic |
| TGAAGATATACAACAGTTTA+TGG | 0.169467 | 7_1:+65646334 | Msa1031180:CDS |
| GGCCTAAGACCTTTGGTAAA+AGG | 0.211322 | 7_1:-65644945 | None:intergenic |
| GCCTTGTGTTGCACAGAATT+TGG | 0.221522 | 7_1:-65646472 | None:intergenic |
| CCAAAATGAAGAACTCATTT+TGG | 0.248059 | 7_1:-65645020 | None:intergenic |
| TTCACAGATACTCTATTCTA+TGG | 0.260832 | 7_1:+65645725 | Msa1031180:CDS |
| AAGAACAAAGGATCTTTCTT+TGG | 0.288385 | 7_1:+65645683 | Msa1031180:CDS |
| ATCAGTGCAATAGTTATAAA+TGG | 0.324527 | 7_1:-65646577 | None:intergenic |
| TACAAAAGTTTCCACATTGA+TGG | 0.366093 | 7_1:+65646429 | Msa1031180:CDS |
| GCATCAAGATCACGAAATTC+AGG | 0.366582 | 7_1:-65646513 | None:intergenic |
| CTCAATGGCGTAGGCTAAGA+TGG | 0.370855 | 7_1:+65646538 | Msa1031180:CDS |
| CTGCCAAATGGTACATCAAC+TGG | 0.374020 | 7_1:-65645103 | None:intergenic |
| TTTATAACTATTGCACTGAT+AGG | 0.375154 | 7_1:+65646580 | Msa1031180:CDS |
| AAACTGTTGTATATCTTCAT+TGG | 0.377706 | 7_1:-65646330 | None:intergenic |
| GCCTAAGACCTTTGGTAAAA+GGG | 0.396106 | 7_1:-65644944 | None:intergenic |
| TATCTGTGAAACTCCTTTGT+TGG | 0.396635 | 7_1:-65645712 | None:intergenic |
| GATCATATCAAATACTTCAA+TGG | 0.398017 | 7_1:+65645151 | Msa1031180:CDS |
| ACCTGCTATGAACGGTGCTT+TGG | 0.403200 | 7_1:-65646406 | None:intergenic |
| TTGTAGATGATGTACCAATC+AGG | 0.405806 | 7_1:+65646259 | Msa1031180:CDS |
| TCCAAAGGATCATACTTGTT+TGG | 0.409589 | 7_1:+65645401 | Msa1031180:CDS |
| GGTACATCAACTGGCTTCCT+TGG | 0.412450 | 7_1:-65645094 | None:intergenic |
| ACATTTGTTTGTAAAATGTA+AGG | 0.414616 | 7_1:-65645637 | None:intergenic |
| GAGTTCTTGGGGAACAGAAC+AGG | 0.419669 | 7_1:+65645610 | Msa1031180:CDS |
| AGTTAAGTACTTACACAATC+TGG | 0.424003 | 7_1:-65645756 | None:intergenic |
| GTTTATGGAATGCTGATGAT+TGG | 0.429689 | 7_1:+65646349 | Msa1031180:CDS |
| GCCAAACAAGTATGATCCTT+TGG | 0.434422 | 7_1:-65645402 | None:intergenic |
| GCTAAGACTTGGGTATATAT+AGG | 0.434684 | 7_1:-65644966 | None:intergenic |
| AAGCCAGTTGATGTACCATT+TGG | 0.436123 | 7_1:+65645100 | Msa1031180:CDS |
| CTGTTCTTGAACACCCTGAT+TGG | 0.452101 | 7_1:-65646273 | None:intergenic |
| TTGCATTCAGGTGGAATTTG+AGG | 0.453359 | 7_1:-65646612 | None:intergenic |
| ATGAACATAAAGATGGTTCC+TGG | 0.454098 | 7_1:+65645434 | Msa1031180:CDS |
| TTACAAACAAATGTGTTCAC+TGG | 0.454841 | 7_1:+65645646 | Msa1031180:CDS |
| ATATATAGGCCTAAGACCTT+TGG | 0.460320 | 7_1:-65644952 | None:intergenic |
| GGGTAATAGTTTCTGCCAAA+TGG | 0.460623 | 7_1:-65645115 | None:intergenic |
| GCAGAAACTATTACCCAACT+TGG | 0.466236 | 7_1:+65645122 | Msa1031180:CDS |
| TTCAAGTTGTGAAAAGTTTG+TGG | 0.473617 | 7_1:-65644988 | None:intergenic |
| GTGATCTTGATGCTGCTCAA+TGG | 0.483264 | 7_1:+65646523 | Msa1031180:CDS |
| TGTTGTATATCTTCATTGGT+TGG | 0.483857 | 7_1:-65646326 | None:intergenic |
| AAAACTCGATGGAACAATAG+TGG | 0.504546 | 7_1:-65646821 | None:intergenic |
| ATGGTTCCTGGTGATTCAGC+TGG | 0.504587 | 7_1:+65645446 | Msa1031180:CDS |
| ACATCAACTGGCTTCCTTGG+AGG | 0.507363 | 7_1:-65645091 | None:intergenic |
| TCCAAAGCACCGTTCATAGC+AGG | 0.508716 | 7_1:+65646405 | Msa1031180:CDS |
| AAAGTTTGTGGCTAAGACTT+GGG | 0.508728 | 7_1:-65644976 | None:intergenic |
| TTTATGGAATGCTGATGATT+GGG | 0.520881 | 7_1:+65646350 | Msa1031180:CDS |
| TATGATCAAAAGCCCAAGTT+GGG | 0.522271 | 7_1:-65645135 | None:intergenic |
| TGTAGATGATGTACCAATCA+GGG | 0.530316 | 7_1:+65646260 | Msa1031180:CDS |
| CTTCACTCTGTGCTCCTCCA+AGG | 0.543749 | 7_1:+65645077 | Msa1031180:CDS |
| CAGAAACTATTACCCAACTT+GGG | 0.544276 | 7_1:+65645123 | Msa1031180:CDS |
| TCTTTATGTTCATACTGAAG+TGG | 0.547122 | 7_1:-65645424 | None:intergenic |
| AAAAGTTTGTGGCTAAGACT+TGG | 0.547818 | 7_1:-65644977 | None:intergenic |
| CTTCAGTATGAACATAAAGA+TGG | 0.549292 | 7_1:+65645427 | Msa1031180:CDS |
| GTGCAACACAAGGCAAAAGA+TGG | 0.550413 | 7_1:+65646481 | Msa1031180:CDS |
| CAACACAAGGCAAAAGATGG+TGG | 0.550815 | 7_1:+65646484 | Msa1031180:CDS |
| AAGTATATAAAGAAAGAGAG+AGG | 0.551126 | 7_1:+65644906 | Msa1031180:five_prime_UTR |
| GCCAAATTCTGTGCAACACA+AGG | 0.551441 | 7_1:+65646471 | Msa1031180:CDS |
| AATGTGTTCACTGGTGGTCA+AGG | 0.560017 | 7_1:+65645655 | Msa1031180:CDS |
| TCTCAATATACAAAACTCGA+TGG | 0.560237 | 7_1:-65646832 | None:intergenic |
| ATATGATCAAAAGCCCAAGT+TGG | 0.560782 | 7_1:-65645136 | None:intergenic |
| GTGGATTAGAGAAAACTGAT+TGG | 0.562589 | 7_1:+65646382 | Msa1031180:CDS |
| TGATGAAAATTTATATGTCA+CGG | 0.576058 | 7_1:-65646641 | None:intergenic |
| TTCAAGAACAGCAAGGACTT+AGG | 0.578577 | 7_1:+65646285 | Msa1031180:CDS |
| CTTCATCTTGATAAGTACAC+TGG | 0.589751 | 7_1:+65645190 | Msa1031180:CDS |
| TTGATGCTGCTCAATGGCGT+AGG | 0.593657 | 7_1:+65646529 | Msa1031180:CDS |
| GATGATTGGGCAACAAGAGG+TGG | 0.601731 | 7_1:+65646363 | Msa1031180:CDS |
| AATGATATATGTCTAATACA+AGG | 0.607205 | 7_1:-65646784 | None:intergenic |
| TAAAGAAAGAGAGAGGAACA+TGG | 0.611334 | 7_1:+65644913 | Msa1031180:five_prime_UTR |
| TCAATGGCGTAGGCTAAGAT+GGG | 0.614694 | 7_1:+65646539 | Msa1031180:CDS |
| CAAACAAATGTGTTCACTGG+TGG | 0.617357 | 7_1:+65645649 | Msa1031180:CDS |
| AACACAAGGCAAAAGATGGT+GGG | 0.620136 | 7_1:+65646485 | Msa1031180:CDS |
| TCTTTGGTTTGATCCAACAA+AGG | 0.620801 | 7_1:+65645699 | Msa1031180:CDS |
| CATATCAAATACTTCAATGG+TGG | 0.624848 | 7_1:+65645154 | Msa1031180:CDS |
| AAAGAAAGAGAGAGGAACAT+GGG | 0.632149 | 7_1:+65644914 | Msa1031180:five_prime_UTR |
| GTCAAGGTAACAAAGAACAA+AGG | 0.646155 | 7_1:+65645671 | Msa1031180:CDS |
| ACTGTTCCAGCTGAATCACC+AGG | 0.657325 | 7_1:-65645452 | None:intergenic |
| ATGATTCACAACCATCAATG+TGG | 0.677115 | 7_1:-65646440 | None:intergenic |
| GCTGATGATTGGGCAACAAG+AGG | 0.682230 | 7_1:+65646360 | Msa1031180:CDS |
| CAGGGTGTTCAAGAACAGCA+AGG | 0.698366 | 7_1:+65646278 | Msa1031180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATATGATACAATATA+TGG | - | chr7_1:65646145-65646164 | None:intergenic | 10.0% |
| !! | AAAATAAATAAATTAGTTAC+TGG | - | chr7_1:65646184-65646203 | None:intergenic | 10.0% |
| !!! | TGTAATTTTAATTTTACTTT+AGG | + | chr7_1:65646876-65646895 | Msa1031180:three_prime_UTR | 10.0% |
| !! | AATATATATGATACAATATA+TGG | - | chr7_1:65646145-65646164 | None:intergenic | 10.0% |
| !! | AAAATAAATAAATTAGTTAC+TGG | - | chr7_1:65646184-65646203 | None:intergenic | 10.0% |
| !!! | TGTAATTTTAATTTTACTTT+AGG | + | chr7_1:65646876-65646895 | Msa1031180:three_prime_UTR | 10.0% |
| !!! | TTTTAATATTTTTTCTTGGA+GGG | - | chr7_1:65644877-65644896 | None:intergenic | 15.0% |
| !!! | CTTCTTTTAATATTTTTTCT+TGG | - | chr7_1:65644881-65644900 | None:intergenic | 15.0% |
| !! | TTAAGTTATTTATACAAACA+TGG | - | chr7_1:65645253-65645272 | None:intergenic | 15.0% |
| !! | TTACTTTATAAATCTAAAAG+AGG | - | chr7_1:65645867-65645886 | None:intergenic | 15.0% |
| !!! | TTTTAATATTTTTTCTTGGA+GGG | - | chr7_1:65644877-65644896 | None:intergenic | 15.0% |
| !!! | CTTCTTTTAATATTTTTTCT+TGG | - | chr7_1:65644881-65644900 | None:intergenic | 15.0% |
| !! | TTAAGTTATTTATACAAACA+TGG | - | chr7_1:65645253-65645272 | None:intergenic | 15.0% |
| !! | TTACTTTATAAATCTAAAAG+AGG | - | chr7_1:65645867-65645886 | None:intergenic | 15.0% |
| !!! | CTTTTAATATTTTTTCTTGG+AGG | - | chr7_1:65644878-65644897 | None:intergenic | 20.0% |
| !!! | TTTCTAACTACTTTTTGTAT+AGG | + | chr7_1:65645365-65645384 | Msa1031180:intron | 20.0% |
| !! | TGTATGTACAAAAACATTTA+AGG | + | chr7_1:65645487-65645506 | Msa1031180:intron | 20.0% |
| !! | ACATTTGTTTGTAAAATGTA+AGG | - | chr7_1:65645640-65645659 | None:intergenic | 20.0% |
| !! | ATTCAAGATTGTTAAAGATT+AGG | - | chr7_1:65645803-65645822 | None:intergenic | 20.0% |
| !! | AATCATATTGAGATATGATT+TGG | - | chr7_1:65645919-65645938 | None:intergenic | 20.0% |
| !! | TTACACAAAAATAAATCAGT+TGG | - | chr7_1:65646217-65646236 | None:intergenic | 20.0% |
| !!! | TTATTTTTGTGTAACTATGT+TGG | + | chr7_1:65646223-65646242 | Msa1031180:intron | 20.0% |
| !!! | AGTTATAAATGGTGTATTTT+TGG | - | chr7_1:65646569-65646588 | None:intergenic | 20.0% |
| !! | TGATGAAAATTTATATGTCA+CGG | - | chr7_1:65646644-65646663 | None:intergenic | 20.0% |
| !! | AATGATATATGTCTAATACA+AGG | - | chr7_1:65646787-65646806 | None:intergenic | 20.0% |
| !!! | CTTTTAATATTTTTTCTTGG+AGG | - | chr7_1:65644878-65644897 | None:intergenic | 20.0% |
| !!! | TTTCTAACTACTTTTTGTAT+AGG | + | chr7_1:65645365-65645384 | Msa1031180:intron | 20.0% |
| !! | TGTATGTACAAAAACATTTA+AGG | + | chr7_1:65645487-65645506 | Msa1031180:intron | 20.0% |
| !! | ACATTTGTTTGTAAAATGTA+AGG | - | chr7_1:65645640-65645659 | None:intergenic | 20.0% |
| !! | ATTCAAGATTGTTAAAGATT+AGG | - | chr7_1:65645803-65645822 | None:intergenic | 20.0% |
| !! | AATCATATTGAGATATGATT+TGG | - | chr7_1:65645919-65645938 | None:intergenic | 20.0% |
| !! | TTACACAAAAATAAATCAGT+TGG | - | chr7_1:65646217-65646236 | None:intergenic | 20.0% |
| !!! | TTATTTTTGTGTAACTATGT+TGG | + | chr7_1:65646223-65646242 | Msa1031180:intron | 20.0% |
| !!! | AGTTATAAATGGTGTATTTT+TGG | - | chr7_1:65646569-65646588 | None:intergenic | 20.0% |
| !! | TGATGAAAATTTATATGTCA+CGG | - | chr7_1:65646644-65646663 | None:intergenic | 20.0% |
| !! | AATGATATATGTCTAATACA+AGG | - | chr7_1:65646787-65646806 | None:intergenic | 20.0% |
| ! | AAGTATATAAAGAAAGAGAG+AGG | + | chr7_1:65644906-65644925 | Msa1031180:five_prime_UTR | 25.0% |
| ! | GATCATATCAAATACTTCAA+TGG | + | chr7_1:65645151-65645170 | Msa1031180:CDS | 25.0% |
| ! | ACTTCAAAACTTTCCTATTT+AGG | + | chr7_1:65645227-65645246 | Msa1031180:intron | 25.0% |
| ! | TAAAAATAGTGTGTACATGA+GGG | - | chr7_1:65645284-65645303 | None:intergenic | 25.0% |
| ! | ATAAAAATAGTGTGTACATG+AGG | - | chr7_1:65645285-65645304 | None:intergenic | 25.0% |
| !!! | TGAAATAGATTTTGAGTTCT+TGG | + | chr7_1:65645597-65645616 | Msa1031180:CDS | 25.0% |
| !!! | GAAATAGATTTTGAGTTCTT+GGG | + | chr7_1:65645598-65645617 | Msa1031180:CDS | 25.0% |
| !!! | AAATAGATTTTGAGTTCTTG+GGG | + | chr7_1:65645599-65645618 | Msa1031180:CDS | 25.0% |
| ! | CTTACCTAAGAAGAATTAAT+TGG | + | chr7_1:65646053-65646072 | Msa1031180:intron | 25.0% |
| ! | TACACCAATTAATTCTTCTT+AGG | - | chr7_1:65646060-65646079 | None:intergenic | 25.0% |
| !! | ATGATACAATATATGGATTG+TGG | - | chr7_1:65646138-65646157 | None:intergenic | 25.0% |
| ! | AAACTGTTGTATATCTTCAT+TGG | - | chr7_1:65646333-65646352 | None:intergenic | 25.0% |
| ! | TGAAGATATACAACAGTTTA+TGG | + | chr7_1:65646334-65646353 | Msa1031180:CDS | 25.0% |
| ! | ATCAGTGCAATAGTTATAAA+TGG | - | chr7_1:65646580-65646599 | None:intergenic | 25.0% |
| !! | TTTATAACTATTGCACTGAT+AGG | + | chr7_1:65646580-65646599 | Msa1031180:CDS | 25.0% |
| !! | TTTTGTATATTGAGAAGTGA+AGG | + | chr7_1:65646840-65646859 | Msa1031180:three_prime_UTR | 25.0% |
| ! | AAGTATATAAAGAAAGAGAG+AGG | + | chr7_1:65644906-65644925 | Msa1031180:five_prime_UTR | 25.0% |
| ! | GATCATATCAAATACTTCAA+TGG | + | chr7_1:65645151-65645170 | Msa1031180:CDS | 25.0% |
| ! | ACTTCAAAACTTTCCTATTT+AGG | + | chr7_1:65645227-65645246 | Msa1031180:intron | 25.0% |
| ! | TAAAAATAGTGTGTACATGA+GGG | - | chr7_1:65645284-65645303 | None:intergenic | 25.0% |
| ! | ATAAAAATAGTGTGTACATG+AGG | - | chr7_1:65645285-65645304 | None:intergenic | 25.0% |
| !!! | TGAAATAGATTTTGAGTTCT+TGG | + | chr7_1:65645597-65645616 | Msa1031180:CDS | 25.0% |
| !!! | GAAATAGATTTTGAGTTCTT+GGG | + | chr7_1:65645598-65645617 | Msa1031180:CDS | 25.0% |
| !!! | AAATAGATTTTGAGTTCTTG+GGG | + | chr7_1:65645599-65645618 | Msa1031180:CDS | 25.0% |
| ! | CTTACCTAAGAAGAATTAAT+TGG | + | chr7_1:65646053-65646072 | Msa1031180:intron | 25.0% |
| ! | TACACCAATTAATTCTTCTT+AGG | - | chr7_1:65646060-65646079 | None:intergenic | 25.0% |
| !! | ATGATACAATATATGGATTG+TGG | - | chr7_1:65646138-65646157 | None:intergenic | 25.0% |
| ! | AAACTGTTGTATATCTTCAT+TGG | - | chr7_1:65646333-65646352 | None:intergenic | 25.0% |
| ! | TGAAGATATACAACAGTTTA+TGG | + | chr7_1:65646334-65646353 | Msa1031180:CDS | 25.0% |
| ! | ATCAGTGCAATAGTTATAAA+TGG | - | chr7_1:65646580-65646599 | None:intergenic | 25.0% |
| !! | TTTATAACTATTGCACTGAT+AGG | + | chr7_1:65646580-65646599 | Msa1031180:CDS | 25.0% |
| !! | TTTTGTATATTGAGAAGTGA+AGG | + | chr7_1:65646840-65646859 | Msa1031180:three_prime_UTR | 25.0% |
| !!! | AATATTTTTTCTTGGAGGGT+AGG | - | chr7_1:65644873-65644892 | None:intergenic | 30.0% |
| !! | TTCAAGTTGTGAAAAGTTTG+TGG | - | chr7_1:65644991-65645010 | None:intergenic | 30.0% |
| ! | CCAAAATGAAGAACTCATTT+TGG | - | chr7_1:65645023-65645042 | None:intergenic | 30.0% |
| ! | CCAAAATGAGTTCTTCATTT+TGG | + | chr7_1:65645020-65645039 | Msa1031180:exon | 30.0% |
| CATATCAAATACTTCAATGG+TGG | + | chr7_1:65645154-65645173 | Msa1031180:CDS | 30.0% | |
| TATACAAACATGGCCTAAAT+AGG | - | chr7_1:65645243-65645262 | None:intergenic | 30.0% | |
| !!! | ACTACTTTTTGTATAGGTAC+TGG | + | chr7_1:65645371-65645390 | Msa1031180:intron | 30.0% |
| TCTTTATGTTCATACTGAAG+TGG | - | chr7_1:65645427-65645446 | None:intergenic | 30.0% | |
| CTTCAGTATGAACATAAAGA+TGG | + | chr7_1:65645427-65645446 | Msa1031180:CDS | 30.0% | |
| TTACAAACAAATGTGTTCAC+TGG | + | chr7_1:65645646-65645665 | Msa1031180:CDS | 30.0% | |
| AAGAACAAAGGATCTTTCTT+TGG | + | chr7_1:65645683-65645702 | Msa1031180:CDS | 30.0% | |
| TTCACAGATACTCTATTCTA+TGG | + | chr7_1:65645725-65645744 | Msa1031180:CDS | 30.0% | |
| AGTTAAGTACTTACACAATC+TGG | - | chr7_1:65645759-65645778 | None:intergenic | 30.0% | |
| GTTAAAGATTAGGTGACTAT+TGG | - | chr7_1:65645793-65645812 | None:intergenic | 30.0% | |
| ! | ATCTTCATTGGTTGGTTAAA+TGG | - | chr7_1:65646321-65646340 | None:intergenic | 30.0% |
| TGTTGTATATCTTCATTGGT+TGG | - | chr7_1:65646329-65646348 | None:intergenic | 30.0% | |
| TTTATGGAATGCTGATGATT+GGG | + | chr7_1:65646350-65646369 | Msa1031180:CDS | 30.0% | |
| TACAAAAGTTTCCACATTGA+TGG | + | chr7_1:65646429-65646448 | Msa1031180:CDS | 30.0% | |
| TCTCAATATACAAAACTCGA+TGG | - | chr7_1:65646835-65646854 | None:intergenic | 30.0% | |
| !!! | AATATTTTTTCTTGGAGGGT+AGG | - | chr7_1:65644873-65644892 | None:intergenic | 30.0% |
| !! | TTCAAGTTGTGAAAAGTTTG+TGG | - | chr7_1:65644991-65645010 | None:intergenic | 30.0% |
| ! | CCAAAATGAAGAACTCATTT+TGG | - | chr7_1:65645023-65645042 | None:intergenic | 30.0% |
| ! | CCAAAATGAGTTCTTCATTT+TGG | + | chr7_1:65645020-65645039 | Msa1031180:exon | 30.0% |
| CATATCAAATACTTCAATGG+TGG | + | chr7_1:65645154-65645173 | Msa1031180:CDS | 30.0% | |
| TATACAAACATGGCCTAAAT+AGG | - | chr7_1:65645243-65645262 | None:intergenic | 30.0% | |
| !!! | ACTACTTTTTGTATAGGTAC+TGG | + | chr7_1:65645371-65645390 | Msa1031180:intron | 30.0% |
| TCTTTATGTTCATACTGAAG+TGG | - | chr7_1:65645427-65645446 | None:intergenic | 30.0% | |
| CTTCAGTATGAACATAAAGA+TGG | + | chr7_1:65645427-65645446 | Msa1031180:CDS | 30.0% | |
| TTACAAACAAATGTGTTCAC+TGG | + | chr7_1:65645646-65645665 | Msa1031180:CDS | 30.0% | |
| AAGAACAAAGGATCTTTCTT+TGG | + | chr7_1:65645683-65645702 | Msa1031180:CDS | 30.0% | |
| TTCACAGATACTCTATTCTA+TGG | + | chr7_1:65645725-65645744 | Msa1031180:CDS | 30.0% | |
| AGTTAAGTACTTACACAATC+TGG | - | chr7_1:65645759-65645778 | None:intergenic | 30.0% | |
| GTTAAAGATTAGGTGACTAT+TGG | - | chr7_1:65645793-65645812 | None:intergenic | 30.0% | |
| ! | ATCTTCATTGGTTGGTTAAA+TGG | - | chr7_1:65646321-65646340 | None:intergenic | 30.0% |
| TGTTGTATATCTTCATTGGT+TGG | - | chr7_1:65646329-65646348 | None:intergenic | 30.0% | |
| TTTATGGAATGCTGATGATT+GGG | + | chr7_1:65646350-65646369 | Msa1031180:CDS | 30.0% | |
| TACAAAAGTTTCCACATTGA+TGG | + | chr7_1:65646429-65646448 | Msa1031180:CDS | 30.0% | |
| TCTCAATATACAAAACTCGA+TGG | - | chr7_1:65646835-65646854 | None:intergenic | 30.0% | |
| TAAAGAAAGAGAGAGGAACA+TGG | + | chr7_1:65644913-65644932 | Msa1031180:five_prime_UTR | 35.0% | |
| AAAGAAAGAGAGAGGAACAT+GGG | + | chr7_1:65644914-65644933 | Msa1031180:five_prime_UTR | 35.0% | |
| ! | GTCTATAACCCTTTTACCAA+AGG | + | chr7_1:65644936-65644955 | Msa1031180:five_prime_UTR | 35.0% |
| ATATATAGGCCTAAGACCTT+TGG | - | chr7_1:65644955-65644974 | None:intergenic | 35.0% | |
| GCTAAGACTTGGGTATATAT+AGG | - | chr7_1:65644969-65644988 | None:intergenic | 35.0% | |
| AAAGTTTGTGGCTAAGACTT+GGG | - | chr7_1:65644979-65644998 | None:intergenic | 35.0% | |
| AAAAGTTTGTGGCTAAGACT+TGG | - | chr7_1:65644980-65644999 | None:intergenic | 35.0% | |
| CAGAAACTATTACCCAACTT+GGG | + | chr7_1:65645123-65645142 | Msa1031180:CDS | 35.0% | |
| TATGATCAAAAGCCCAAGTT+GGG | - | chr7_1:65645138-65645157 | None:intergenic | 35.0% | |
| ATATGATCAAAAGCCCAAGT+TGG | - | chr7_1:65645139-65645158 | None:intergenic | 35.0% | |
| CTTCATCTTGATAAGTACAC+TGG | + | chr7_1:65645190-65645209 | Msa1031180:CDS | 35.0% | |
| TCCAAAGGATCATACTTGTT+TGG | + | chr7_1:65645401-65645420 | Msa1031180:CDS | 35.0% | |
| ATGAACATAAAGATGGTTCC+TGG | + | chr7_1:65645434-65645453 | Msa1031180:CDS | 35.0% | |
| GTCAAGGTAACAAAGAACAA+AGG | + | chr7_1:65645671-65645690 | Msa1031180:CDS | 35.0% | |
| !! | TCTTTGGTTTGATCCAACAA+AGG | + | chr7_1:65645699-65645718 | Msa1031180:CDS | 35.0% |
| TATCTGTGAAACTCCTTTGT+TGG | - | chr7_1:65645715-65645734 | None:intergenic | 35.0% | |
| ! | GTGTAATGGAATGGTGAAAA+GGG | - | chr7_1:65645827-65645846 | None:intergenic | 35.0% |
| ! | TGTGTAATGGAATGGTGAAA+AGG | - | chr7_1:65645828-65645847 | None:intergenic | 35.0% |
| ! | TAGATTTAGTGGGTGTGTAA+TGG | - | chr7_1:65645841-65645860 | None:intergenic | 35.0% |
| AAAGAGGAGCTAGATTTAGT+GGG | - | chr7_1:65645851-65645870 | None:intergenic | 35.0% | |
| AAAAGAGGAGCTAGATTTAG+TGG | - | chr7_1:65645852-65645871 | None:intergenic | 35.0% | |
| !!! | TGTAACTATGTTGGTTTTGC+AGG | + | chr7_1:65646232-65646251 | Msa1031180:intron | 35.0% |
| TTGTAGATGATGTACCAATC+AGG | + | chr7_1:65646259-65646278 | Msa1031180:CDS | 35.0% | |
| TGTAGATGATGTACCAATCA+GGG | + | chr7_1:65646260-65646279 | Msa1031180:CDS | 35.0% | |
| GTTTATGGAATGCTGATGAT+TGG | + | chr7_1:65646349-65646368 | Msa1031180:CDS | 35.0% | |
| !! | GTGGATTAGAGAAAACTGAT+TGG | + | chr7_1:65646382-65646401 | Msa1031180:CDS | 35.0% |
| ! | CTTTTGTAACCTGCTATGAA+CGG | - | chr7_1:65646417-65646436 | None:intergenic | 35.0% |
| ATGATTCACAACCATCAATG+TGG | - | chr7_1:65646443-65646462 | None:intergenic | 35.0% | |
| AAAACTCGATGGAACAATAG+TGG | - | chr7_1:65646824-65646843 | None:intergenic | 35.0% | |
| TAAAGAAAGAGAGAGGAACA+TGG | + | chr7_1:65644913-65644932 | Msa1031180:five_prime_UTR | 35.0% | |
| AAAGAAAGAGAGAGGAACAT+GGG | + | chr7_1:65644914-65644933 | Msa1031180:five_prime_UTR | 35.0% | |
| ! | GTCTATAACCCTTTTACCAA+AGG | + | chr7_1:65644936-65644955 | Msa1031180:five_prime_UTR | 35.0% |
| ATATATAGGCCTAAGACCTT+TGG | - | chr7_1:65644955-65644974 | None:intergenic | 35.0% | |
| GCTAAGACTTGGGTATATAT+AGG | - | chr7_1:65644969-65644988 | None:intergenic | 35.0% | |
| AAAGTTTGTGGCTAAGACTT+GGG | - | chr7_1:65644979-65644998 | None:intergenic | 35.0% | |
| AAAAGTTTGTGGCTAAGACT+TGG | - | chr7_1:65644980-65644999 | None:intergenic | 35.0% | |
| CAGAAACTATTACCCAACTT+GGG | + | chr7_1:65645123-65645142 | Msa1031180:CDS | 35.0% | |
| TATGATCAAAAGCCCAAGTT+GGG | - | chr7_1:65645138-65645157 | None:intergenic | 35.0% | |
| ATATGATCAAAAGCCCAAGT+TGG | - | chr7_1:65645139-65645158 | None:intergenic | 35.0% | |
| CTTCATCTTGATAAGTACAC+TGG | + | chr7_1:65645190-65645209 | Msa1031180:CDS | 35.0% | |
| TCCAAAGGATCATACTTGTT+TGG | + | chr7_1:65645401-65645420 | Msa1031180:CDS | 35.0% | |
| ATGAACATAAAGATGGTTCC+TGG | + | chr7_1:65645434-65645453 | Msa1031180:CDS | 35.0% | |
| GTCAAGGTAACAAAGAACAA+AGG | + | chr7_1:65645671-65645690 | Msa1031180:CDS | 35.0% | |
| !! | TCTTTGGTTTGATCCAACAA+AGG | + | chr7_1:65645699-65645718 | Msa1031180:CDS | 35.0% |
| TATCTGTGAAACTCCTTTGT+TGG | - | chr7_1:65645715-65645734 | None:intergenic | 35.0% | |
| ! | GTGTAATGGAATGGTGAAAA+GGG | - | chr7_1:65645827-65645846 | None:intergenic | 35.0% |
| ! | TGTGTAATGGAATGGTGAAA+AGG | - | chr7_1:65645828-65645847 | None:intergenic | 35.0% |
| ! | TAGATTTAGTGGGTGTGTAA+TGG | - | chr7_1:65645841-65645860 | None:intergenic | 35.0% |
| AAAGAGGAGCTAGATTTAGT+GGG | - | chr7_1:65645851-65645870 | None:intergenic | 35.0% | |
| AAAAGAGGAGCTAGATTTAG+TGG | - | chr7_1:65645852-65645871 | None:intergenic | 35.0% | |
| !!! | TGTAACTATGTTGGTTTTGC+AGG | + | chr7_1:65646232-65646251 | Msa1031180:intron | 35.0% |
| TTGTAGATGATGTACCAATC+AGG | + | chr7_1:65646259-65646278 | Msa1031180:CDS | 35.0% | |
| TGTAGATGATGTACCAATCA+GGG | + | chr7_1:65646260-65646279 | Msa1031180:CDS | 35.0% | |
| GTTTATGGAATGCTGATGAT+TGG | + | chr7_1:65646349-65646368 | Msa1031180:CDS | 35.0% | |
| !! | GTGGATTAGAGAAAACTGAT+TGG | + | chr7_1:65646382-65646401 | Msa1031180:CDS | 35.0% |
| ! | CTTTTGTAACCTGCTATGAA+CGG | - | chr7_1:65646417-65646436 | None:intergenic | 35.0% |
| ATGATTCACAACCATCAATG+TGG | - | chr7_1:65646443-65646462 | None:intergenic | 35.0% | |
| AAAACTCGATGGAACAATAG+TGG | - | chr7_1:65646824-65646843 | None:intergenic | 35.0% | |
| !!! | ATTTTTTCTTGGAGGGTAGG+AGG | - | chr7_1:65644870-65644889 | None:intergenic | 40.0% |
| ! | ACCCTTTTACCAAAGGTCTT+AGG | + | chr7_1:65644943-65644962 | Msa1031180:five_prime_UTR | 40.0% |
| GCCTAAGACCTTTGGTAAAA+GGG | - | chr7_1:65644947-65644966 | None:intergenic | 40.0% | |
| ! | AAGCCAGTTGATGTACCATT+TGG | + | chr7_1:65645100-65645119 | Msa1031180:CDS | 40.0% |
| GGGTAATAGTTTCTGCCAAA+TGG | - | chr7_1:65645118-65645137 | None:intergenic | 40.0% | |
| GCAGAAACTATTACCCAACT+TGG | + | chr7_1:65645122-65645141 | Msa1031180:CDS | 40.0% | |
| GCCAAACAAGTATGATCCTT+TGG | - | chr7_1:65645405-65645424 | None:intergenic | 40.0% | |
| CAAACAAATGTGTTCACTGG+TGG | + | chr7_1:65645649-65645668 | Msa1031180:CDS | 40.0% | |
| ! | TTAGTGGGTGTGTAATGGAA+TGG | - | chr7_1:65645836-65645855 | None:intergenic | 40.0% |
| TTCAAGAACAGCAAGGACTT+AGG | + | chr7_1:65646285-65646304 | Msa1031180:CDS | 40.0% | |
| AACACAAGGCAAAAGATGGT+GGG | + | chr7_1:65646485-65646504 | Msa1031180:CDS | 40.0% | |
| GCATCAAGATCACGAAATTC+AGG | - | chr7_1:65646516-65646535 | None:intergenic | 40.0% | |
| TTGCATTCAGGTGGAATTTG+AGG | - | chr7_1:65646615-65646634 | None:intergenic | 40.0% | |
| !!! | ATTTTTTCTTGGAGGGTAGG+AGG | - | chr7_1:65644870-65644889 | None:intergenic | 40.0% |
| ! | ACCCTTTTACCAAAGGTCTT+AGG | + | chr7_1:65644943-65644962 | Msa1031180:five_prime_UTR | 40.0% |
| GCCTAAGACCTTTGGTAAAA+GGG | - | chr7_1:65644947-65644966 | None:intergenic | 40.0% | |
| ! | AAGCCAGTTGATGTACCATT+TGG | + | chr7_1:65645100-65645119 | Msa1031180:CDS | 40.0% |
| GGGTAATAGTTTCTGCCAAA+TGG | - | chr7_1:65645118-65645137 | None:intergenic | 40.0% | |
| GCAGAAACTATTACCCAACT+TGG | + | chr7_1:65645122-65645141 | Msa1031180:CDS | 40.0% | |
| GCCAAACAAGTATGATCCTT+TGG | - | chr7_1:65645405-65645424 | None:intergenic | 40.0% | |
| CAAACAAATGTGTTCACTGG+TGG | + | chr7_1:65645649-65645668 | Msa1031180:CDS | 40.0% | |
| ! | TTAGTGGGTGTGTAATGGAA+TGG | - | chr7_1:65645836-65645855 | None:intergenic | 40.0% |
| TTCAAGAACAGCAAGGACTT+AGG | + | chr7_1:65646285-65646304 | Msa1031180:CDS | 40.0% | |
| AACACAAGGCAAAAGATGGT+GGG | + | chr7_1:65646485-65646504 | Msa1031180:CDS | 40.0% | |
| GCATCAAGATCACGAAATTC+AGG | - | chr7_1:65646516-65646535 | None:intergenic | 40.0% | |
| TTGCATTCAGGTGGAATTTG+AGG | - | chr7_1:65646615-65646634 | None:intergenic | 40.0% | |
| GGCCTAAGACCTTTGGTAAA+AGG | - | chr7_1:65644948-65644967 | None:intergenic | 45.0% | |
| CTGCCAAATGGTACATCAAC+TGG | - | chr7_1:65645106-65645125 | None:intergenic | 45.0% | |
| !!! | GGTACTGGTTTTCAGTCCAA+AGG | + | chr7_1:65645386-65645405 | Msa1031180:intron | 45.0% |
| AATGTGTTCACTGGTGGTCA+AGG | + | chr7_1:65645655-65645674 | Msa1031180:CDS | 45.0% | |
| CTGTTCTTGAACACCCTGAT+TGG | - | chr7_1:65646276-65646295 | None:intergenic | 45.0% | |
| GCCAAATTCTGTGCAACACA+AGG | + | chr7_1:65646471-65646490 | Msa1031180:CDS | 45.0% | |
| GCCTTGTGTTGCACAGAATT+TGG | - | chr7_1:65646475-65646494 | None:intergenic | 45.0% | |
| GTGCAACACAAGGCAAAAGA+TGG | + | chr7_1:65646481-65646500 | Msa1031180:CDS | 45.0% | |
| CAACACAAGGCAAAAGATGG+TGG | + | chr7_1:65646484-65646503 | Msa1031180:CDS | 45.0% | |
| GTGATCTTGATGCTGCTCAA+TGG | + | chr7_1:65646523-65646542 | Msa1031180:CDS | 45.0% | |
| TCAATGGCGTAGGCTAAGAT+GGG | + | chr7_1:65646539-65646558 | Msa1031180:CDS | 45.0% | |
| ! | TCACGGTCTCTTTTGCATTC+AGG | - | chr7_1:65646627-65646646 | None:intergenic | 45.0% |
| TGCGTGACAACAATGTGACA+TGG | - | chr7_1:65646737-65646756 | None:intergenic | 45.0% | |
| GGCCTAAGACCTTTGGTAAA+AGG | - | chr7_1:65644948-65644967 | None:intergenic | 45.0% | |
| CTGCCAAATGGTACATCAAC+TGG | - | chr7_1:65645106-65645125 | None:intergenic | 45.0% | |
| !!! | GGTACTGGTTTTCAGTCCAA+AGG | + | chr7_1:65645386-65645405 | Msa1031180:intron | 45.0% |
| AATGTGTTCACTGGTGGTCA+AGG | + | chr7_1:65645655-65645674 | Msa1031180:CDS | 45.0% | |
| CTGTTCTTGAACACCCTGAT+TGG | - | chr7_1:65646276-65646295 | None:intergenic | 45.0% | |
| GCCAAATTCTGTGCAACACA+AGG | + | chr7_1:65646471-65646490 | Msa1031180:CDS | 45.0% | |
| GCCTTGTGTTGCACAGAATT+TGG | - | chr7_1:65646475-65646494 | None:intergenic | 45.0% | |
| GTGCAACACAAGGCAAAAGA+TGG | + | chr7_1:65646481-65646500 | Msa1031180:CDS | 45.0% | |
| CAACACAAGGCAAAAGATGG+TGG | + | chr7_1:65646484-65646503 | Msa1031180:CDS | 45.0% | |
| GTGATCTTGATGCTGCTCAA+TGG | + | chr7_1:65646523-65646542 | Msa1031180:CDS | 45.0% | |
| TCAATGGCGTAGGCTAAGAT+GGG | + | chr7_1:65646539-65646558 | Msa1031180:CDS | 45.0% | |
| ! | TCACGGTCTCTTTTGCATTC+AGG | - | chr7_1:65646627-65646646 | None:intergenic | 45.0% |
| TGCGTGACAACAATGTGACA+TGG | - | chr7_1:65646737-65646756 | None:intergenic | 45.0% | |
| ! | ACATCAACTGGCTTCCTTGG+AGG | - | chr7_1:65645094-65645113 | None:intergenic | 50.0% |
| ! | GGTACATCAACTGGCTTCCT+TGG | - | chr7_1:65645097-65645116 | None:intergenic | 50.0% |
| ATGGTTCCTGGTGATTCAGC+TGG | + | chr7_1:65645446-65645465 | Msa1031180:CDS | 50.0% | |
| ACTGTTCCAGCTGAATCACC+AGG | - | chr7_1:65645455-65645474 | None:intergenic | 50.0% | |
| GAGTTCTTGGGGAACAGAAC+AGG | + | chr7_1:65645610-65645629 | Msa1031180:CDS | 50.0% | |
| ! | CAGGGTGTTCAAGAACAGCA+AGG | + | chr7_1:65646278-65646297 | Msa1031180:CDS | 50.0% |
| GCTGATGATTGGGCAACAAG+AGG | + | chr7_1:65646360-65646379 | Msa1031180:CDS | 50.0% | |
| GATGATTGGGCAACAAGAGG+TGG | + | chr7_1:65646363-65646382 | Msa1031180:CDS | 50.0% | |
| !! | TCCAAAGCACCGTTCATAGC+AGG | + | chr7_1:65646405-65646424 | Msa1031180:CDS | 50.0% |
| ACCTGCTATGAACGGTGCTT+TGG | - | chr7_1:65646409-65646428 | None:intergenic | 50.0% | |
| TTGATGCTGCTCAATGGCGT+AGG | + | chr7_1:65646529-65646548 | Msa1031180:CDS | 50.0% | |
| CTCAATGGCGTAGGCTAAGA+TGG | + | chr7_1:65646538-65646557 | Msa1031180:CDS | 50.0% | |
| ! | CGGTCTCTTTTGCATTCAGG+TGG | - | chr7_1:65646624-65646643 | None:intergenic | 50.0% |
| ! | ACATCAACTGGCTTCCTTGG+AGG | - | chr7_1:65645094-65645113 | None:intergenic | 50.0% |
| ! | GGTACATCAACTGGCTTCCT+TGG | - | chr7_1:65645097-65645116 | None:intergenic | 50.0% |
| ATGGTTCCTGGTGATTCAGC+TGG | + | chr7_1:65645446-65645465 | Msa1031180:CDS | 50.0% | |
| ACTGTTCCAGCTGAATCACC+AGG | - | chr7_1:65645455-65645474 | None:intergenic | 50.0% | |
| GAGTTCTTGGGGAACAGAAC+AGG | + | chr7_1:65645610-65645629 | Msa1031180:CDS | 50.0% | |
| ! | CAGGGTGTTCAAGAACAGCA+AGG | + | chr7_1:65646278-65646297 | Msa1031180:CDS | 50.0% |
| GCTGATGATTGGGCAACAAG+AGG | + | chr7_1:65646360-65646379 | Msa1031180:CDS | 50.0% | |
| GATGATTGGGCAACAAGAGG+TGG | + | chr7_1:65646363-65646382 | Msa1031180:CDS | 50.0% | |
| !! | TCCAAAGCACCGTTCATAGC+AGG | + | chr7_1:65646405-65646424 | Msa1031180:CDS | 50.0% |
| ACCTGCTATGAACGGTGCTT+TGG | - | chr7_1:65646409-65646428 | None:intergenic | 50.0% | |
| TTGATGCTGCTCAATGGCGT+AGG | + | chr7_1:65646529-65646548 | Msa1031180:CDS | 50.0% | |
| CTCAATGGCGTAGGCTAAGA+TGG | + | chr7_1:65646538-65646557 | Msa1031180:CDS | 50.0% | |
| ! | CGGTCTCTTTTGCATTCAGG+TGG | - | chr7_1:65646624-65646643 | None:intergenic | 50.0% |
| CTTCACTCTGTGCTCCTCCA+AGG | + | chr7_1:65645077-65645096 | Msa1031180:CDS | 55.0% | |
| CTTCACTCTGTGCTCCTCCA+AGG | + | chr7_1:65645077-65645096 | Msa1031180:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 65644857 | 65646961 | 65644857 | ID=Msa1031180;Name=Msa1031180 |
| chr7_1 | mRNA | 65644857 | 65646961 | 65644857 | ID=Msa1031180-mRNA-1;Parent=Msa1031180;Name=Msa1031180-mRNA-1;_AED=0.25;_eAED=0.25;_QI=168|1|1|1|0.75|0.6|5|286|293 |
| chr7_1 | exon | 65644857 | 65645211 | 65644857 | ID=Msa1031180-mRNA-1:exon:14596;Parent=Msa1031180-mRNA-1 |
| chr7_1 | exon | 65645387 | 65645487 | 65645387 | ID=Msa1031180-mRNA-1:exon:14597;Parent=Msa1031180-mRNA-1 |
| chr7_1 | exon | 65645571 | 65645764 | 65645571 | ID=Msa1031180-mRNA-1:exon:14598;Parent=Msa1031180-mRNA-1 |
| chr7_1 | exon | 65646254 | 65646724 | 65646254 | ID=Msa1031180-mRNA-1:exon:14599;Parent=Msa1031180-mRNA-1 |
| chr7_1 | exon | 65646747 | 65646961 | 65646747 | ID=Msa1031180-mRNA-1:exon:14600;Parent=Msa1031180-mRNA-1 |
| chr7_1 | five_prime_UTR | 65644857 | 65645024 | 65644857 | ID=Msa1031180-mRNA-1:five_prime_utr;Parent=Msa1031180-mRNA-1 |
| chr7_1 | CDS | 65645025 | 65645211 | 65645025 | ID=Msa1031180-mRNA-1:cds;Parent=Msa1031180-mRNA-1 |
| chr7_1 | CDS | 65645387 | 65645487 | 65645387 | ID=Msa1031180-mRNA-1:cds;Parent=Msa1031180-mRNA-1 |
| chr7_1 | CDS | 65645571 | 65645764 | 65645571 | ID=Msa1031180-mRNA-1:cds;Parent=Msa1031180-mRNA-1 |
| chr7_1 | CDS | 65646254 | 65646653 | 65646254 | ID=Msa1031180-mRNA-1:cds;Parent=Msa1031180-mRNA-1 |
| chr7_1 | three_prime_UTR | 65646654 | 65646724 | 65646654 | ID=Msa1031180-mRNA-1:three_prime_utr;Parent=Msa1031180-mRNA-1 |
| chr7_1 | three_prime_UTR | 65646747 | 65646961 | 65646747 | ID=Msa1031180-mRNA-1:three_prime_utr;Parent=Msa1031180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
