AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0199650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0199650 MtrunA17_Chr2g0294301 95.109 368 18 0 1 368 1 368 0.0 724
Msa0199650 MtrunA17_Chr2g0294311 63.712 361 119 2 18 368 15 373 1.16e-167 473
Msa0199650 MtrunA17_Chr4g0068441 61.518 369 140 2 1 368 1 368 1.07e-165 468
Msa0199650 MtrunA17_Chr8g0374101 47.253 364 180 4 14 365 10 373 5.91e-115 339
Msa0199650 MtrunA17_Chr3g0077571 41.873 363 202 6 6 367 2 356 2.28e-91 278
Msa0199650 MtrunA17_Chr2g0285061 41.243 354 200 7 18 367 15 364 8.24e-88 269
Msa0199650 MtrunA17_Chr8g0380041 40.390 359 205 7 14 367 8 362 5.26e-86 265
Msa0199650 MtrunA17_Chr5g0434621 42.633 319 174 5 36 351 26 338 3.17e-84 259
Msa0199650 MtrunA17_Chr3g0086641 39.496 357 207 7 15 367 18 369 3.70e-83 257
Msa0199650 MtrunA17_Chr3g0092131 44.340 318 168 7 37 350 25 337 2.35e-82 255
Msa0199650 MtrunA17_Chr3g0131321 40.469 341 191 4 34 367 33 368 3.49e-82 255
Msa0199650 MtrunA17_Chr4g0060811 43.711 318 170 7 37 350 29 341 2.51e-81 253
Msa0199650 MtrunA17_Chr4g0017431 37.088 364 223 4 8 367 1 362 6.42e-81 251
Msa0199650 MtrunA17_Chr1g0182811 36.240 367 229 4 3 366 1 365 1.31e-78 246
Msa0199650 MtrunA17_Chr1g0189931 36.740 362 224 4 7 366 4 362 1.02e-77 243
Msa0199650 MtrunA17_Chr7g0275021 38.757 338 202 4 31 366 30 364 2.03e-77 243
Msa0199650 MtrunA17_Chr5g0444401 36.723 354 207 6 24 368 17 362 3.57e-77 242
Msa0199650 MtrunA17_Chr7g0274991 36.080 352 219 5 18 366 15 363 2.74e-74 234
Msa0199650 MtrunA17_Chr1g0189901 36.467 351 218 4 18 366 14 361 3.61e-74 234
Msa0199650 MtrunA17_Chr7g0275001 37.069 348 215 3 21 366 11 356 8.59e-74 233
Msa0199650 MtrunA17_Chr7g0275011 36.620 355 220 4 14 366 13 364 6.48e-72 228
Msa0199650 MtrunA17_Chr3g0077581 40.896 335 187 10 37 365 38 367 2.21e-71 227
Msa0199650 MtrunA17_Chr4g0008851 36.283 339 209 5 32 366 29 364 7.74e-70 223
Msa0199650 MtrunA17_Chr3g0099161 36.901 355 207 6 21 366 78 424 8.73e-69 222
Msa0199650 MtrunA17_Chr3g0099231 35.311 354 213 6 21 366 14 359 1.25e-68 221
Msa0199650 MtrunA17_Chr3g0099151 36.364 374 217 9 5 366 56 420 5.44e-68 220
Msa0199650 MtrunA17_Chr7g0215961 35.312 337 200 5 32 366 30 350 8.79e-67 215
Msa0199650 MtrunA17_Chr1g0189891 35.833 360 213 8 16 366 4 354 1.40e-66 214
Msa0199650 MtrunA17_Chr6g0457921 35.736 333 208 4 37 366 31 360 1.04e-64 209
Msa0199650 MtrunA17_Chr5g0396511 36.050 319 199 3 37 353 48 363 1.95e-64 209
Msa0199650 MtrunA17_Chr3g0085881 40.118 339 176 9 37 368 35 353 2.96e-62 203
Msa0199650 MtrunA17_Chr3g0120861 35.276 326 200 7 30 350 33 352 4.55e-62 202
Msa0199650 MtrunA17_Chr1g0156921 34.758 351 213 8 1 340 1 346 8.60e-62 202
Msa0199650 MtrunA17_Chr2g0301641 34.211 342 206 9 35 366 43 375 2.58e-61 202
Msa0199650 MtrunA17_Chr5g0438641 35.735 347 212 7 9 350 6 346 5.37e-61 200
Msa0199650 MtrunA17_Chr2g0330781 35.093 322 201 6 33 350 29 346 5.82e-61 199
Msa0199650 MtrunA17_Chr3g0105401 34.911 338 210 7 19 351 12 344 7.71e-61 199
Msa0199650 MtrunA17_Chr5g0438621 34.615 338 210 7 18 350 13 344 1.43e-60 199
Msa0199650 MtrunA17_Chr5g0432101 35.447 347 211 8 10 349 8 348 1.67e-60 199
Msa0199650 MtrunA17_Chr1g0156931 35.404 322 199 6 33 351 39 354 6.00e-60 197
Msa0199650 MtrunA17_Chr8g0341001 34.451 328 207 6 27 350 24 347 2.46e-59 195
Msa0199650 MtrunA17_Chr8g0371481 34.154 325 198 10 35 351 41 357 5.25e-59 195
Msa0199650 MtrunA17_Chr8g0371471 32.416 327 210 7 35 356 41 361 4.94e-57 189
Msa0199650 MtrunA17_Chr1g0156911 34.006 347 213 6 11 346 5 346 2.03e-56 188
Msa0199650 MtrunA17_Chr2g0320671 32.919 322 207 7 33 350 28 344 2.08e-56 187
Msa0199650 MtrunA17_Chr3g0142921 35.826 321 193 8 35 351 36 347 8.01e-56 186
Msa0199650 MtrunA17_Chr2g0284991 36.533 323 189 10 31 349 29 339 1.37e-55 186
Msa0199650 MtrunA17_Chr2g0284921 39.048 315 174 10 37 346 36 337 5.50e-55 184
Msa0199650 MtrunA17_Chr8g0380031 34.513 339 205 9 32 367 81 405 8.96e-55 185
Msa0199650 MtrunA17_Chr3g0085231 33.423 371 212 12 3 368 10 350 1.40e-54 183
Msa0199650 MtrunA17_Chr2g0284951 38.154 325 181 11 31 351 29 337 2.16e-54 183
Msa0199650 MtrunA17_Chr4g0027521 35.061 328 195 9 33 350 25 344 6.16e-54 181
Msa0199650 MtrunA17_Chr8g0370951 32.044 362 232 8 15 367 11 367 1.05e-53 181
Msa0199650 MtrunA17_Chr1g0156901 33.856 319 203 5 26 341 41 354 2.58e-53 180
Msa0199650 MtrunA17_Chr5g0438631 31.657 338 221 7 18 350 11 343 7.20e-53 178
Msa0199650 MtrunA17_Chr3g0142941 35.256 312 192 6 33 340 45 350 3.29e-52 177
Msa0199650 MtrunA17_Chr8g0371491 33.333 345 219 7 18 356 17 356 1.39e-51 175
Msa0199650 MtrunA17_Chr2g0283191 33.815 346 208 9 12 341 12 352 2.08e-51 175
Msa0199650 MtrunA17_Chr5g0420811 34.706 340 196 10 18 348 12 334 4.25e-51 174
Msa0199650 MtrunA17_Chr5g0405831 30.579 363 236 8 5 356 7 364 2.38e-50 172
Msa0199650 MtrunA17_Chr2g0285001 35.312 337 194 13 21 346 14 337 1.21e-49 171
Msa0199650 MtrunA17_Chr2g0284941 34.916 358 189 13 8 355 1 324 1.72e-49 170
Msa0199650 MtrunA17_Chr8g0349341 30.994 342 213 8 35 367 37 364 3.06e-49 169
Msa0199650 MtrunA17_Chr8g0370981 29.157 415 228 10 10 366 11 417 3.86e-49 171
Msa0199650 MtrunA17_Chr8g0344941 31.593 364 225 10 5 355 9 361 4.10e-49 169
Msa0199650 MtrunA17_Chr1g0156891 33.546 313 199 7 33 341 41 348 1.23e-48 168
Msa0199650 MtrunA17_Chr4g0046151 31.755 359 215 11 15 352 17 366 2.20e-48 167
Msa0199650 MtrunA17_Chr5g0405821 30.270 370 232 10 8 356 1 365 5.08e-48 166
Msa0199650 MtrunA17_Chr8g0349321 32.267 344 206 11 35 367 37 364 2.69e-45 159
Msa0199650 MtrunA17_Chr8g0344931 32.174 345 213 9 29 367 31 360 8.58e-44 155
Msa0199650 MtrunA17_Chr5g0437421 31.562 320 199 10 31 338 28 339 9.98e-42 149
Msa0199650 MtrunA17_Chr8g0349331 30.857 350 185 10 29 367 29 332 1.44e-41 148
Msa0199650 MtrunA17_Chr1g0157001 28.485 330 227 4 40 366 41 364 2.30e-40 146
Msa0199650 MtrunA17_Chr8g0352901 31.909 351 195 11 35 356 28 363 1.91e-37 138
Msa0199650 MtrunA17_Chr6g0459921 33.197 244 155 7 127 367 122 360 7.09e-37 136
Msa0199650 MtrunA17_Chr6g0455661 32.636 239 154 6 131 367 238 471 6.83e-36 136
Msa0199650 MtrunA17_Chr6g0455661 54.167 120 50 4 9 126 5 121 1.36e-27 113
Msa0199650 MtrunA17_Chr8g0349301 31.525 295 183 8 26 316 28 307 1.87e-35 132
Msa0199650 MtrunA17_Chr7g0226931 27.820 399 217 11 15 358 9 391 2.30e-35 133
Msa0199650 MtrunA17_Chr8g0370961 29.839 248 161 6 122 365 4 242 5.07e-35 129
Msa0199650 MtrunA17_Chr7g0271551 30.973 339 198 13 30 351 31 350 7.03e-35 131
Msa0199650 MtrunA17_Chr7g0254461 28.775 351 210 10 35 356 43 382 1.02e-34 131
Msa0199650 MtrunA17_Chr6g0450731 29.970 337 204 11 35 356 33 352 2.37e-34 130
Msa0199650 MtrunA17_Chr7g0275291 27.429 350 212 9 34 356 32 366 2.32e-33 127
Msa0199650 MtrunA17_Chr6g0450721 29.973 367 207 13 14 352 2 346 3.59e-33 126
Msa0199650 MtrunA17_Chr7g0226911 27.835 388 226 11 10 356 1 375 1.02e-32 126
Msa0199650 MtrunA17_Chr8g0381581 28.986 345 216 10 35 356 40 378 2.06e-31 122
Msa0199650 MtrunA17_Chr8g0347751 28.424 387 224 15 7 356 3 373 2.06e-31 122
Msa0199650 MtrunA17_Chr1g0160101 28.571 350 209 12 35 356 42 378 3.32e-31 122
Msa0199650 MtrunA17_Chr6g0450701 30.709 381 219 13 7 356 3 369 3.76e-31 121
Msa0199650 MtrunA17_Chr1g0160011 29.191 346 209 11 35 356 40 373 9.38e-31 120
Msa0199650 MtrunA17_Chr2g0283531 30.400 375 205 14 16 352 3 359 1.13e-30 120
Msa0199650 MtrunA17_Chr1g0159971 28.947 380 224 12 13 356 13 382 1.90e-30 120
Msa0199650 MtrunA17_Chr4g0027571 31.336 217 142 4 136 350 3 214 6.42e-30 114
Msa0199650 MtrunA17_Chr1g0159981 29.700 367 218 12 18 356 27 381 2.61e-29 117
Msa0199650 MtrunA17_Chr1g0160031 28.696 345 212 10 35 356 39 372 3.51e-29 116
Msa0199650 MtrunA17_Chr1g0159991 30.259 347 206 12 35 356 36 371 6.90e-29 115
Msa0199650 MtrunA17_Chr7g0273101 28.647 377 202 15 21 356 15 365 3.55e-28 113
Msa0199650 MtrunA17_Chr1g0189921 48.361 122 55 2 18 137 14 129 5.74e-28 107
Msa0199650 MtrunA17_Chr3g0104821 28.446 341 212 9 34 352 43 373 1.25e-27 112
Msa0199650 MtrunA17_Chr7g0226941 29.060 351 220 10 28 356 26 369 7.60e-27 109
Msa0199650 MtrunA17_Chr2g0283481 27.596 337 213 13 37 352 49 375 8.75e-27 110
Msa0199650 MtrunA17_Chr2g0301581 30.168 358 200 15 19 352 15 346 9.74e-27 109
Msa0199650 MtrunA17_Chr0c01g0489581 30.769 338 193 13 34 352 29 344 1.69e-26 108
Msa0199650 MtrunA17_Chr6g0450711 29.630 351 198 13 35 356 122 452 2.10e-26 109
Msa0199650 MtrunA17_Chr0c01g0489571 30.769 338 193 13 34 352 29 344 3.13e-26 107
Msa0199650 MtrunA17_Chr2g0317271 30.769 338 193 14 34 352 29 344 4.01e-26 107
Msa0199650 MtrunA17_Chr4g0057991 26.975 367 224 12 12 353 16 363 8.42e-26 107
Msa0199650 MtrunA17_Chr1g0198351 28.707 317 184 14 37 339 45 333 8.61e-26 106
Msa0199650 MtrunA17_Chr5g0440501 29.018 224 146 5 132 347 10 228 1.02e-25 103
Msa0199650 MtrunA17_Chr1g0198381 27.692 325 198 13 37 349 4 303 1.67e-25 104
Msa0199650 MtrunA17_Chr1g0178931 28.754 313 194 12 37 341 39 330 3.12e-25 104
Msa0199650 MtrunA17_Chr8g0339251 30.503 318 177 10 35 330 28 323 3.63e-25 104
Msa0199650 MtrunA17_Chr2g0317261 30.473 338 194 14 34 352 29 344 3.94e-25 104
Msa0199650 MtrunA17_Chr2g0301541 29.609 358 202 15 19 352 15 346 5.56e-25 104
Msa0199650 MtrunA17_Chr1g0191461 27.954 347 202 13 35 350 31 360 1.92e-24 102
Msa0199650 MtrunA17_Chr7g0266061 28.750 320 194 11 33 341 40 336 2.86e-24 102
Msa0199650 MtrunA17_Chr2g0283501 26.923 364 230 12 13 352 9 360 3.25e-24 102
Msa0199650 MtrunA17_Chr2g0283511 27.907 344 199 14 40 352 36 361 7.63e-24 101
Msa0199650 MtrunA17_Chr3g0093031 27.826 345 206 11 34 352 29 356 5.46e-23 99.0
Msa0199650 MtrunA17_Chr7g0229591 36.667 150 91 3 33 179 28 176 5.96e-23 95.5
Msa0199650 MtrunA17_Chr3g0112821 28.446 341 204 12 34 352 29 351 9.62e-23 98.2
Msa0199650 MtrunA17_Chr7g0229581 36.170 141 88 2 211 350 8 147 1.61e-22 92.8
Msa0199650 MtrunA17_Chr2g0321991 47.273 110 51 3 16 118 10 119 1.27e-20 86.7
Msa0199650 MtrunA17_Chr8g0370971 43.802 121 58 4 15 125 15 135 1.94e-20 87.4
Msa0199650 MtrunA17_Chr6g0469511 48.315 89 43 2 33 118 28 116 1.58e-18 81.3
Msa0199650 MtrunA17_Chr1g0189911 30.822 146 98 3 222 366 1 144 2.83e-18 80.9
Msa0199650 MtrunA17_Chr4g0027561 43.564 101 54 2 33 130 28 128 7.22e-18 79.7
Msa0199650 MtrunA17_Chr2g0301571 28.819 288 163 11 84 352 38 302 2.65e-16 79.0
Msa0199650 MtrunA17_Chr2g0301551 28.819 288 163 11 84 352 38 302 3.14e-16 78.6
Msa0199650 MtrunA17_Chr1g0198391 25.000 340 187 14 37 339 35 343 4.40e-16 78.6
Msa0199650 MtrunA17_Chr3g0096551 25.691 362 204 13 34 352 28 367 1.06e-15 77.8
Msa0199650 MtrunA17_Chr3g0112691 27.714 350 198 15 34 352 29 354 2.30e-15 76.6
Msa0199650 MtrunA17_Chr6g0469521 33.088 136 81 2 201 331 22 152 2.40e-15 72.8
Msa0199650 MtrunA17_Chr4g0018571 35.484 155 88 4 201 350 23 170 5.32e-15 72.4
Msa0199650 MtrunA17_Chr7g0228261 37.037 81 50 1 286 366 11 90 1.45e-12 63.2
Msa0199650 MtrunA17_Chr2g0308201 46.377 69 36 1 19 86 19 87 3.95e-12 62.0
Msa0199650 MtrunA17_Chr4g0018561 57.692 52 20 1 33 82 28 79 7.77e-12 61.2
Msa0199650 MtrunA17_Chr3g0104801 37.500 88 54 1 34 120 43 130 1.26e-11 62.8
Msa0199650 MtrunA17_Chr5g0432081 41.935 62 35 1 288 349 3 63 3.54e-11 58.9
Msa0199650 MtrunA17_Chr2g0284931 24.681 235 146 8 136 367 13 219 7.72e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0199650 AT2G23540.1 46.903 339 174 3 33 365 46 384 1.02e-112 334
Msa0199650 AT3G50400.1 47.647 340 171 4 33 365 32 371 2.06e-111 330
Msa0199650 AT5G15720.1 46.450 338 172 5 35 367 30 363 5.19e-96 290
Msa0199650 AT4G16230.1 55.102 245 108 2 10 252 4 248 6.42e-91 273
Msa0199650 AT1G71691.2 45.075 335 175 6 33 365 53 380 1.13e-89 275
Msa0199650 AT1G29660.1 42.493 353 196 6 18 367 15 363 1.36e-89 274
Msa0199650 AT5G41890.1 41.834 349 178 7 35 365 31 372 1.38e-89 274
Msa0199650 AT1G29670.1 42.222 360 191 10 18 367 10 362 7.56e-88 270
Msa0199650 AT1G29670.2 42.222 360 191 10 18 367 78 430 1.03e-86 269
Msa0199650 AT1G71250.1 39.403 335 200 3 32 365 38 370 8.23e-84 259
Msa0199650 AT5G45670.1 42.943 333 182 7 37 365 31 359 3.38e-83 258
Msa0199650 AT4G18970.1 42.090 335 186 7 37 367 30 360 1.06e-81 254
Msa0199650 AT5G08460.1 41.124 338 192 4 35 367 49 384 5.23e-81 253
Msa0199650 AT5G37690.1 41.509 318 177 5 36 350 28 339 1.48e-80 251
Msa0199650 AT4G18970.2 42.090 335 186 7 37 367 30 360 1.71e-80 252
Msa0199650 AT1G74460.1 42.320 319 175 8 36 350 24 337 2.34e-77 243
Msa0199650 AT5G37690.2 39.937 318 174 6 36 350 28 331 2.24e-73 232
Msa0199650 AT5G15720.2 48.120 266 130 4 35 295 30 292 2.28e-73 231
Msa0199650 AT4G10950.2 36.283 339 210 4 33 368 69 404 8.76e-73 232
Msa0199650 AT4G28780.1 34.085 355 225 4 18 366 10 361 1.98e-70 225
Msa0199650 AT4G10950.1 36.283 339 206 5 33 368 69 400 2.65e-70 226
Msa0199650 AT1G33811.1 38.710 341 190 10 21 347 15 350 2.95e-70 224
Msa0199650 AT1G71691.3 48.302 265 129 5 33 295 53 311 4.72e-70 222
Msa0199650 AT5G18430.1 34.341 364 230 6 6 366 3 360 1.87e-69 222
Msa0199650 AT3G04290.1 36.637 333 206 4 32 362 26 355 2.43e-69 222
Msa0199650 AT5G33370.1 34.925 335 213 4 34 366 29 360 9.54e-68 218
Msa0199650 AT5G15720.3 40.830 289 162 5 84 367 48 332 2.37e-66 213
Msa0199650 AT1G71691.1 39.789 284 163 5 83 365 3 279 1.82e-64 207
Msa0199650 AT2G04570.1 36.522 345 207 9 13 351 5 343 7.65e-64 207
Msa0199650 AT5G55050.1 35.777 341 201 9 37 366 41 374 3.13e-61 201
Msa0199650 AT2G42990.1 36.070 341 202 9 18 350 10 342 7.98e-60 197
Msa0199650 AT1G75880.1 34.890 364 212 8 4 351 14 368 2.22e-59 196
Msa0199650 AT4G26790.1 33.742 326 207 6 32 353 26 346 5.84e-59 195
Msa0199650 AT4G26790.2 33.742 326 207 6 32 353 26 346 5.84e-59 195
Msa0199650 AT1G58430.1 34.473 351 199 11 9 341 5 342 6.06e-58 192
Msa0199650 AT3G16370.1 33.939 330 210 6 25 350 20 345 7.24e-58 192
Msa0199650 AT1G75880.2 34.615 364 212 9 4 351 14 367 2.49e-57 191
Msa0199650 AT5G22810.1 35.674 356 203 12 11 350 6 351 3.31e-57 190
Msa0199650 AT2G31540.1 33.739 329 191 10 35 349 35 350 1.49e-55 186
Msa0199650 AT1G06990.1 33.540 322 202 7 35 350 37 352 1.58e-55 186
Msa0199650 AT1G75890.2 35.737 319 195 8 35 348 47 360 2.41e-55 186
Msa0199650 AT3G53100.1 36.257 342 204 9 16 350 9 343 2.76e-55 185
Msa0199650 AT2G19060.1 33.524 349 208 11 13 352 3 336 3.14e-55 185
Msa0199650 AT1G75890.3 35.737 319 195 8 35 348 76 389 4.34e-55 186
Msa0199650 AT2G24560.1 35.016 317 187 9 35 341 34 341 9.77e-55 184
Msa0199650 AT4G30140.1 34.835 333 194 11 37 366 35 347 8.09e-54 181
Msa0199650 AT1G75890.1 34.743 331 195 9 35 348 47 373 1.29e-53 181
Msa0199650 AT1G20120.1 34.568 324 201 8 35 353 78 395 1.45e-53 182
Msa0199650 AT5G03820.1 34.365 323 203 6 33 350 31 349 3.31e-53 180
Msa0199650 AT1G71120.1 32.174 345 210 9 30 365 26 355 7.23e-53 179
Msa0199650 AT5G03820.2 34.365 323 203 6 33 350 59 377 8.48e-53 179
Msa0199650 AT1G53920.1 34.000 350 208 10 31 367 44 383 1.60e-52 179
Msa0199650 AT1G75900.1 32.508 323 208 7 33 351 41 357 4.75e-52 177
Msa0199650 AT2G30310.1 33.041 342 198 11 18 341 13 341 5.19e-52 177
Msa0199650 AT2G19050.1 32.471 348 212 10 13 352 3 335 6.80e-52 176
Msa0199650 AT5G42170.1 34.783 322 198 9 33 350 48 361 1.19e-50 174
Msa0199650 AT2G30220.1 34.906 318 186 10 35 341 33 340 1.41e-50 173
Msa0199650 AT5G03810.1 33.846 325 201 9 33 350 28 345 1.54e-50 173
Msa0199650 AT5G45960.1 34.375 320 191 9 31 339 43 354 1.99e-50 173
Msa0199650 AT2G40250.1 32.132 333 203 7 28 347 29 351 1.24e-49 171
Msa0199650 AT1G20132.1 33.951 324 199 8 35 351 61 376 1.41e-49 171
Msa0199650 AT4G16233.1 56.693 127 55 0 239 365 1 127 1.13e-48 161
Msa0199650 AT5G33370.2 34.470 264 169 3 34 295 29 290 3.39e-48 166
Msa0199650 AT2G19010.2 31.165 369 230 11 6 367 26 377 8.05e-48 166
Msa0199650 AT2G19010.1 32.733 333 205 10 37 367 32 347 8.49e-48 166
Msa0199650 AT5G45950.1 30.982 326 212 8 26 348 31 346 1.66e-47 165
Msa0199650 AT3G14820.1 33.129 326 205 8 29 350 26 342 1.83e-47 165
Msa0199650 AT5G40990.1 31.378 341 221 5 35 367 37 372 1.07e-46 163
Msa0199650 AT1G73610.1 32.308 325 198 8 30 350 30 336 1.34e-46 162
Msa0199650 AT1G75920.2 30.532 357 211 12 11 351 1 336 2.77e-46 161
Msa0199650 AT3G14225.1 29.213 356 237 6 23 367 25 376 2.98e-46 162
Msa0199650 AT3G14225.2 29.379 354 235 6 23 367 25 372 3.85e-46 162
Msa0199650 AT1G59406.1 34.146 328 194 10 33 351 28 342 4.57e-46 161
Msa0199650 AT1G59030.1 34.146 328 194 10 33 351 28 342 4.57e-46 161
Msa0199650 AT1G58725.1 34.146 328 194 10 33 351 28 342 4.57e-46 161
Msa0199650 AT5G63170.1 31.832 333 196 9 18 341 11 321 1.82e-45 159
Msa0199650 AT1G20135.1 31.642 335 200 11 17 341 7 322 2.55e-45 158
Msa0199650 AT2G03980.2 34.268 321 190 7 35 346 43 351 2.43e-44 157
Msa0199650 AT2G03980.3 34.268 321 190 7 35 346 43 351 2.43e-44 157
Msa0199650 AT2G03980.1 34.268 321 190 7 35 346 43 351 2.43e-44 157
Msa0199650 AT2G03980.4 34.268 321 190 7 35 346 43 351 2.43e-44 157
Msa0199650 AT1G75910.1 29.714 350 223 9 18 358 8 343 4.22e-43 153
Msa0199650 AT2G24560.2 35.379 277 161 8 35 301 34 302 9.21e-43 151
Msa0199650 AT1G75920.1 29.692 357 203 12 22 351 11 346 3.44e-42 151
Msa0199650 AT1G20130.2 31.157 337 202 8 33 351 182 506 4.01e-42 154
Msa0199650 AT1G20130.1 31.157 337 202 8 33 351 202 526 5.69e-42 154
Msa0199650 AT1G53940.2 30.702 342 222 7 35 367 39 374 1.44e-41 150
Msa0199650 AT2G19050.2 35.294 255 153 7 29 281 25 269 3.30e-41 146
Msa0199650 AT1G23500.1 31.940 335 199 9 26 352 26 339 5.27e-41 147
Msa0199650 AT1G58520.3 32.344 337 199 11 24 351 19 335 3.70e-40 145
Msa0199650 AT1G58525.1 32.344 337 199 11 24 351 19 335 3.70e-40 145
Msa0199650 AT1G53990.1 29.651 344 216 9 35 367 35 363 1.07e-39 144
Msa0199650 AT1G54790.3 30.102 392 204 14 5 356 7 368 5.17e-39 143
Msa0199650 AT1G75920.3 28.286 350 195 11 9 351 5 305 2.20e-37 137
Msa0199650 AT3G43570.1 30.226 354 198 11 6 351 1 313 6.99e-37 136
Msa0199650 AT1G75920.4 29.808 312 186 11 52 351 18 308 2.00e-36 134
Msa0199650 AT1G75930.1 30.675 326 199 12 34 350 28 335 2.64e-36 135
Msa0199650 AT3G05180.1 29.508 366 217 12 23 360 24 376 4.33e-36 135
Msa0199650 AT1G54030.1 27.381 336 216 11 34 366 51 361 1.04e-34 132
Msa0199650 AT1G67830.1 30.259 347 201 12 35 352 30 364 1.15e-34 131
Msa0199650 AT1G54790.1 28.535 389 211 14 8 356 6 367 4.28e-34 130
Msa0199650 AT4G01130.1 27.419 372 224 12 12 352 11 367 1.90e-33 128
Msa0199650 AT3G43550.1 31.973 294 188 6 6 295 1 286 2.40e-33 125
Msa0199650 AT4G16220.1 55.752 113 46 2 17 125 9 121 5.27e-33 124
Msa0199650 AT3G27950.1 28.533 368 218 13 18 356 10 361 1.27e-32 125
Msa0199650 AT1G54020.2 27.844 334 216 11 37 366 35 347 1.58e-32 125
Msa0199650 AT1G56670.1 29.607 331 202 11 37 351 42 357 4.68e-32 124
Msa0199650 AT1G09390.1 30.514 331 199 11 37 351 39 354 4.55e-31 121
Msa0199650 AT2G04020.2 31.034 319 161 9 35 346 43 309 7.17e-31 120
Msa0199650 AT2G31550.1 31.579 209 121 6 151 349 13 209 8.74e-31 117
Msa0199650 AT1G28650.1 28.457 376 225 16 20 368 22 380 2.41e-30 120
Msa0199650 AT5G14450.1 29.551 379 226 13 9 356 9 377 2.43e-30 120
Msa0199650 AT3G62280.1 30.029 343 195 13 30 350 31 350 1.34e-29 117
Msa0199650 AT2G04020.1 36.946 203 112 5 35 231 43 235 3.27e-29 114
Msa0199650 AT1G28570.1 28.446 341 202 13 39 352 38 363 8.58e-29 115
Msa0199650 AT1G54000.1 26.667 345 217 11 33 365 34 354 9.85e-29 115
Msa0199650 AT3G26430.1 28.045 353 223 9 28 356 24 369 1.19e-28 115
Msa0199650 AT1G54790.2 26.747 415 211 15 8 356 6 393 1.23e-28 115
Msa0199650 AT1G28660.1 27.692 390 235 17 7 366 4 376 1.49e-28 115
Msa0199650 AT1G28670.1 26.804 388 242 16 7 366 4 377 1.61e-28 114
Msa0199650 AT1G53940.1 30.597 268 174 6 35 297 39 299 3.57e-28 112
Msa0199650 AT1G28640.1 27.273 374 222 16 20 363 20 373 5.45e-28 113
Msa0199650 AT3G14210.1 28.863 343 212 13 35 366 36 357 5.73e-28 113
Msa0199650 AT2G27360.1 29.446 343 197 16 39 352 37 363 7.19e-28 113
Msa0199650 AT1G28580.1 28.571 343 199 14 39 352 41 366 8.15e-28 113
Msa0199650 AT3G14220.1 27.401 354 227 13 22 366 19 351 8.85e-28 112
Msa0199650 AT1G54010.1 26.316 342 216 11 37 366 38 355 1.95e-27 112
Msa0199650 AT1G31550.2 29.032 341 199 14 39 352 40 364 2.72e-27 111
Msa0199650 AT1G28660.2 27.692 390 234 18 7 366 4 375 3.53e-27 111
Msa0199650 AT3G48460.1 27.326 344 211 14 31 352 37 363 1.37e-26 109
Msa0199650 AT5G03610.1 27.987 318 190 12 37 339 45 338 5.88e-26 107
Msa0199650 AT1G28610.2 28.205 351 201 15 33 352 29 359 3.79e-25 105
Msa0199650 AT3G09930.2 29.524 315 190 11 37 339 41 335 6.31e-25 104
Msa0199650 AT3G09930.1 29.524 315 190 11 37 339 41 335 6.31e-25 104
Msa0199650 AT1G54030.2 27.170 265 168 8 34 295 51 293 1.70e-24 102
Msa0199650 AT1G28600.1 29.480 346 191 15 39 352 35 359 5.62e-24 102
Msa0199650 AT5G45910.1 28.226 372 234 14 6 352 1 364 5.41e-23 99.4
Msa0199650 AT4G01130.3 26.804 291 171 10 95 353 2 282 5.85e-23 97.8
Msa0199650 AT1G31550.1 27.353 340 203 14 39 352 40 361 5.99e-23 99.4
Msa0199650 AT4G01130.2 26.733 303 188 10 12 295 11 298 7.12e-23 98.2
Msa0199650 AT5G03600.1 27.796 313 197 10 32 338 11 300 7.43e-23 98.2
Msa0199650 AT5G03600.2 27.532 316 200 10 32 341 46 338 1.14e-22 98.2
Msa0199650 AT1G28590.1 26.686 341 208 13 39 352 40 365 2.58e-22 97.8
Msa0199650 AT1G54020.1 25.818 275 181 9 94 366 8 261 1.72e-20 90.9
Msa0199650 AT1G54020.5 25.818 275 181 9 94 366 8 261 1.72e-20 90.9
Msa0199650 AT1G54020.3 25.818 275 181 9 94 366 8 261 1.72e-20 90.9
Msa0199650 AT3G62280.2 29.577 284 159 11 30 295 31 291 3.85e-20 90.1
Msa0199650 AT1G56670.2 28.044 271 168 9 37 295 42 297 8.84e-20 89.0
Msa0199650 AT1G54020.4 26.794 209 145 5 160 366 10 212 4.17e-19 85.9
Msa0199650 AT3G14210.2 29.439 214 138 8 160 366 22 229 2.53e-17 81.3
Msa0199650 AT1G28580.2 25.753 299 180 12 79 352 4 285 8.49e-17 80.5
Msa0199650 AT1G28570.2 27.311 238 147 9 129 352 66 291 1.51e-14 74.3
Msa0199650 AT1G53970.2 44.737 76 39 2 35 107 20 95 6.80e-11 58.9
Msa0199650 AT1G53970.1 44.737 76 39 2 35 107 20 95 6.80e-11 58.9

Find 68 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCCTTATGGAATTGATTT+TGG 0.092134 2_1:-18913961 Msa0199650:CDS
AAGGGTTCATTATTTGTTTA+TGG 0.155661 2_1:-18911890 Msa0199650:CDS
ACACACTTGTCTCCAGAAAA+TGG 0.189223 2_1:+18911989 None:intergenic
ATTGCAGAACGTTTATTAAA+TGG 0.214339 2_1:-18911384 Msa0199650:CDS
ATCGATCCAAGTATATTTAT+TGG 0.215394 2_1:-18911443 Msa0199650:CDS
GAAGATATCATTAGCAAAAT+TGG 0.215499 2_1:-18912399 Msa0199650:CDS
TACTTGTCTCCTAATGCTTA+TGG 0.219625 2_1:-18913559 Msa0199650:CDS
AATAATTGAGCTAGGTGATT+AGG 0.265635 2_1:+18911959 None:intergenic
CCTCAACAAGGTTCTTCAAT+TGG 0.274013 2_1:+18911930 None:intergenic
TGGAGATGCTTACCACATTA+TGG 0.280362 2_1:-18911870 Msa0199650:CDS
GTGGTAAATGTTGGTCCTAT+TGG 0.311602 2_1:-18912040 Msa0199650:CDS
AAAGCAAATCATCACCCTTA+TGG 0.315459 2_1:-18913973 Msa0199650:CDS
AGAACCGTTGTTGATGTTAT+AGG 0.319449 2_1:-18913910 Msa0199650:intron
ATAATTGAGCTAGGTGATTA+GGG 0.322500 2_1:+18911960 None:intergenic
TGGTAAATGTTGGTCCTATT+GGG 0.322655 2_1:-18912039 Msa0199650:CDS
AAGAGTTGCCAAACATTTGT+AGG 0.332790 2_1:+18911342 None:intergenic
GAGCTAGGTGATTAGGGAAT+TGG 0.335306 2_1:+18911966 None:intergenic
ATGATGAATTACAGTAAATA+TGG 0.342390 2_1:-18911839 Msa0199650:intron
TCGATCCAAGTATATTTATT+GGG 0.354002 2_1:-18911442 Msa0199650:CDS
CTCAACAAGGTTCTTCAATT+GGG 0.373272 2_1:+18911931 None:intergenic
TCTCTCTTCACAGTAGCATT+TGG 0.375070 2_1:-18912345 Msa0199650:CDS
TGTCACCTAGTTGGTCGATT+TGG 0.384428 2_1:-18911507 Msa0199650:CDS
TTTCCAAAATCAATTCCATA+AGG 0.403249 2_1:+18913958 None:intergenic
TTCCAAAATCAATTCCATAA+GGG 0.412375 2_1:+18913959 None:intergenic
ATGTTTCACCTACAAATGTT+TGG 0.416903 2_1:-18911350 Msa0199650:CDS
ATGATGGTCACAAATGATTC+TGG 0.426170 2_1:+18912255 None:intergenic
CACCTAGTTGGTCGATTTGG+AGG 0.427520 2_1:-18911504 Msa0199650:CDS
TGAACTATAAGAGCAACAAC+TGG 0.432737 2_1:-18913602 Msa0199650:intron
CACACTTGTCTCCAGAAAAT+GGG 0.435694 2_1:+18911990 None:intergenic
CTTGATAACTATTTGGCACC+TGG 0.437197 2_1:-18912309 Msa0199650:CDS
GCATAAAATTTCCTCTCCAA+TGG 0.437807 2_1:-18914160 Msa0199650:exon
AGAACCTTGTTGAGGAATTG+AGG 0.451494 2_1:-18911922 Msa0199650:CDS
ATAAGGGTGATGATTTGCTT+TGG 0.452435 2_1:+18913975 None:intergenic
AATTATGCTTCTGCTGCAGC+TGG 0.452909 2_1:-18913514 Msa0199650:CDS
GGAATTGAGGACAAATTTGA+AGG 0.455369 2_1:-18911909 Msa0199650:CDS
ATCATCGATCCATAAGCATT+AGG 0.468420 2_1:+18913550 None:intergenic
CATAAAATTTCCTCTCCAAT+GGG 0.469528 2_1:-18914159 Msa0199650:exon
ATACATGGTATACACCCAAT+AGG 0.480201 2_1:+18912025 None:intergenic
TAATTGCCACTCTGGAATTG+AGG 0.482479 2_1:+18912284 None:intergenic
AATTGCCACTCTGGAATTGA+GGG 0.484983 2_1:+18912285 None:intergenic
TCTGCATGTTGTCACCTAGT+TGG 0.496655 2_1:-18911516 Msa0199650:CDS
AGTATCCCAATAAATATACT+TGG 0.499989 2_1:+18911437 None:intergenic
GGGTGTTAAATAATTGAGCT+AGG 0.500038 2_1:+18911951 None:intergenic
TATGGATCGATGATTCTAAA+GGG 0.502817 2_1:-18913541 Msa0199650:CDS
GGTGATTCTTTGCTCGATGT+AGG 0.509930 2_1:-18914024 Msa0199650:CDS
GAGAAACCAAACAAAACAAG+AGG 0.517413 2_1:-18914197 None:intergenic
TTATGGATCGATGATTCTAA+AGG 0.518381 2_1:-18913542 Msa0199650:CDS
CTCAAATTATAAAGACCCAT+TGG 0.521109 2_1:+18914144 None:intergenic
CACTCTGGAATTGAGGGACC+AGG 0.530750 2_1:+18912291 None:intergenic
TTGCAGCGGTTATTCACTCT+AGG 0.535321 2_1:-18912079 Msa0199650:intron
GGAGACAATAATTGCCACTC+TGG 0.560416 2_1:+18912276 None:intergenic
ATAACATTGGCAGCATCACT+AGG 0.560734 2_1:+18911408 None:intergenic
AAAATTGTTGTGGTAAATGT+TGG 0.566046 2_1:-18912049 Msa0199650:CDS
GGGTTTAAATCTCTCATACA+TGG 0.580780 2_1:+18912010 None:intergenic
TAAGCATTAGGAGACAAGTA+AGG 0.583422 2_1:+18913562 None:intergenic
TCATGATATCTTCCATAATG+TGG 0.590694 2_1:+18911858 None:intergenic
GAATTGAGGACAAATTTGAA+GGG 0.595549 2_1:-18911908 Msa0199650:CDS
TTGTCCTCAATTCCTCAACA+AGG 0.598318 2_1:+18911918 None:intergenic
AGCCTCCAAATCGACCAACT+AGG 0.621062 2_1:+18911502 None:intergenic
TCTGAATGTTGATATCATGA+TGG 0.622808 2_1:+18912239 None:intergenic
CCAATTGAAGAACCTTGTTG+AGG 0.628282 2_1:-18911930 Msa0199650:CDS
GCTGGAATTCTCAATTACAC+TGG 0.641243 2_1:-18913496 Msa0199650:CDS
GCATTAGGAGACAAGTAAGG+AGG 0.648380 2_1:+18913565 None:intergenic
GAACTATAAGAGCAACAACT+GGG 0.648398 2_1:-18913601 Msa0199650:intron
ATTATAAAGACCCATTGGAG+AGG 0.658225 2_1:+18914149 None:intergenic
ACGTTCTGCAATGATAACAT+TGG 0.669402 2_1:+18911395 None:intergenic
CTTACCTATAACATCAACAA+CGG 0.672230 2_1:+18913906 None:intergenic
CTGGTCCCTCAATTCCAGAG+TGG 0.723486 2_1:-18912290 Msa0199650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATAATTACTTTTTTTGT+TGG + chr2_1:18912303-18912322 None:intergenic 10.0%
!! TTTATTAAAAAACAAATTGT+TGG + chr2_1:18912713-18912732 None:intergenic 10.0%
!!! ATTTGTTTTTTAATAAACTT+TGG - chr2_1:18912716-18912735 Msa0199650:intron 10.0%
!!! TAATTATTTTAATGTGTAAT+AGG - chr2_1:18913928-18913947 Msa0199650:CDS 10.0%
!!! AAATTTTATGCCAAAAAAAT+AGG + chr2_1:18911314-18911333 None:intergenic 15.0%
!! ATAAGATAAGATAATGAAAA+TGG + chr2_1:18911617-18911636 None:intergenic 15.0%
!!! CTTATCTTATGTTTATTTTT+AGG - chr2_1:18911632-18911651 Msa0199650:intron 15.0%
!!! TTCATAGTTTTTACTTTTTA+GGG - chr2_1:18911822-18911841 Msa0199650:intron 15.0%
!! TTACAATAATGATAAAAAAG+AGG - chr2_1:18912112-18912131 Msa0199650:intron 15.0%
!!! ATTGATTTAACAATTTTTTG+AGG + chr2_1:18912221-18912240 None:intergenic 15.0%
!! TTCAATACAATTCATTATAT+TGG + chr2_1:18912828-18912847 None:intergenic 15.0%
!! TAAAAAAAATTATTCTACCA+GGG + chr2_1:18913743-18913762 None:intergenic 15.0%
!! ATAAAAAAAATTATTCTACC+AGG + chr2_1:18913744-18913763 None:intergenic 15.0%
!!! TCATTTTTGAGAATATGTTT+AGG - chr2_1:18911370-18911389 Msa0199650:CDS 20.0%
!!! CTTCATAGTTTTTACTTTTT+AGG - chr2_1:18911821-18911840 Msa0199650:intron 20.0%
!! AAGAATGCAAAATTATAAGT+AGG + chr2_1:18912244-18912263 None:intergenic 20.0%
!!! TTCATATATTCAAGTTTTCT+AGG + chr2_1:18913298-18913317 None:intergenic 20.0%
!! ATGATGAATTACAGTAAATA+TGG - chr2_1:18913644-18913663 Msa0199650:intron 20.0%
! TTCCAAAATCAATTCCATAA+GGG + chr2_1:18911527-18911546 None:intergenic 25.0%
! TTTCCAAAATCAATTCCATA+AGG + chr2_1:18911528-18911547 None:intergenic 25.0%
! AAAGTAAAAACTATGAAGCA+CGG + chr2_1:18911819-18911838 None:intergenic 25.0%
! AACTAGACAACAAAAAAACA+AGG + chr2_1:18912040-18912059 None:intergenic 25.0%
! TAGTTCCAAGTTCAATTATT+AGG - chr2_1:18912055-18912074 Msa0199650:CDS 25.0%
! AGTTCCAAGTTCAATTATTA+GGG - chr2_1:18912056-18912075 Msa0199650:CDS 25.0%
! CTCACATTTACTTATACATA+TGG - chr2_1:18912146-18912165 Msa0199650:intron 25.0%
! TGTACAATATCTTCAAAATG+TGG - chr2_1:18912342-18912361 Msa0199650:CDS 25.0%
!! AAATGTGGATTAATTTCTTG+AGG - chr2_1:18912357-18912376 Msa0199650:CDS 25.0%
! GTATATAAGTTTCACACTAA+GGG - chr2_1:18912638-18912657 Msa0199650:intron 25.0%
! TCATTATATTGGTGAAAATG+TGG + chr2_1:18912817-18912836 None:intergenic 25.0%
! AAGAGAAAATTAGTTGTAGA+AGG + chr2_1:18912911-18912930 None:intergenic 25.0%
! ATTCAAATCCTCTAAATACA+TGG - chr2_1:18912980-18912999 Msa0199650:intron 25.0%
! TGAATCTTCATGTGATTAAT+AGG - chr2_1:18913011-18913030 Msa0199650:intron 25.0%
! GAAGATATCATTAGCAAAAT+TGG - chr2_1:18913084-18913103 Msa0199650:intron 25.0%
!!! CGATTTTCTTGATAACTATT+TGG - chr2_1:18913167-18913186 Msa0199650:intron 25.0%
!!! CTAGGTTTTTAGCAAAATTA+CGG + chr2_1:18913280-18913299 None:intergenic 25.0%
! ATTATTACAACTATTTGCAG+CGG - chr2_1:18913390-18913409 Msa0199650:intron 25.0%
!! ATTTACCACAACAATTTTTC+TGG + chr2_1:18913432-18913451 None:intergenic 25.0%
! AAAATTGTTGTGGTAAATGT+TGG - chr2_1:18913434-18913453 Msa0199650:intron 25.0%
! AAGGGTTCATTATTTGTTTA+TGG - chr2_1:18913593-18913612 Msa0199650:CDS 25.0%
! TGAATTACAGTAAATATGGT+AGG - chr2_1:18913648-18913667 Msa0199650:intron 25.0%
! GAATTACAGTAAATATGGTA+GGG - chr2_1:18913649-18913668 Msa0199650:intron 25.0%
! AATCTACATAGACAAAAGAA+AGG + chr2_1:18913695-18913714 None:intergenic 25.0%
! ATCGATCCAAGTATATTTAT+TGG - chr2_1:18914040-18914059 Msa0199650:CDS 25.0%
! TCGATCCAAGTATATTTATT+GGG - chr2_1:18914041-18914060 Msa0199650:CDS 25.0%
! AGTATCCCAATAAATATACT+TGG + chr2_1:18914049-18914068 None:intergenic 25.0%
! ATTGCAGAACGTTTATTAAA+TGG - chr2_1:18914099-18914118 Msa0199650:CDS 25.0%
!!! ACAAGAGGAACCTATTTTTT+TGG - chr2_1:18911301-18911320 Msa0199650:three_prime_UTR 30.0%
CATAAAATTTCCTCTCCAAT+GGG - chr2_1:18911324-18911343 Msa0199650:exon 30.0%
CTCAAATTATAAAGACCCAT+TGG + chr2_1:18911342-18911361 None:intergenic 30.0%
!! ATCCAAGCTTCATTTGTTTT+TGG - chr2_1:18911438-18911457 Msa0199650:CDS 30.0%
CTTACCTATAACATCAACAA+CGG + chr2_1:18911580-18911599 None:intergenic 30.0%
TTCAGTGTAATTACAAGTGT+CGG - chr2_1:18911730-18911749 Msa0199650:intron 30.0%
TTATGGATCGATGATTCTAA+AGG - chr2_1:18911941-18911960 Msa0199650:CDS 30.0%
TATGGATCGATGATTCTAAA+GGG - chr2_1:18911942-18911961 Msa0199650:CDS 30.0%
ACAACAAAAAAACAAGGTGT+AGG + chr2_1:18912034-18912053 None:intergenic 30.0%
AGGAATGTTTAACAATGATG+TGG - chr2_1:18912377-18912396 Msa0199650:CDS 30.0%
ATGATACAACATCAAACGAT+GGG - chr2_1:18912401-18912420 Msa0199650:CDS 30.0%
GGTATATAAGTTTCACACTA+AGG - chr2_1:18912637-18912656 Msa0199650:intron 30.0%
TACTATGAGACAAGAAAATG+AGG - chr2_1:18912748-18912767 Msa0199650:intron 30.0%
TCATGTTACCATGTATTTAG+AGG + chr2_1:18912991-18913010 None:intergenic 30.0%
TCTTCATGTGATTAATAGGT+TGG - chr2_1:18913015-18913034 Msa0199650:intron 30.0%
TCTGAATGTTGATATCATGA+TGG + chr2_1:18913247-18913266 None:intergenic 30.0%
! AGAGATTTAAACCCATTTTC+TGG - chr2_1:18913482-18913501 Msa0199650:intron 30.0%
ATAATTGAGCTAGGTGATTA+GGG + chr2_1:18913526-18913545 None:intergenic 30.0%
AATAATTGAGCTAGGTGATT+AGG + chr2_1:18913527-18913546 None:intergenic 30.0%
GAATTGAGGACAAATTTGAA+GGG - chr2_1:18913575-18913594 Msa0199650:CDS 30.0%
TCATGATATCTTCCATAATG+TGG + chr2_1:18913628-18913647 None:intergenic 30.0%
! ACTTTTGAATAACGATCACA+TGG + chr2_1:18914012-18914031 None:intergenic 30.0%
ATGTTTCACCTACAAATGTT+TGG - chr2_1:18914133-18914152 Msa0199650:CDS 30.0%
GCATAAAATTTCCTCTCCAA+TGG - chr2_1:18911323-18911342 Msa0199650:exon 35.0%
ATTATAAAGACCCATTGGAG+AGG + chr2_1:18911337-18911356 None:intergenic 35.0%
CACCAAAAACAAATGAAGCT+TGG + chr2_1:18911443-18911462 None:intergenic 35.0%
!! ATAAGGGTGATGATTTGCTT+TGG + chr2_1:18911511-18911530 None:intergenic 35.0%
AAAGCAAATCATCACCCTTA+TGG - chr2_1:18911510-18911529 Msa0199650:CDS 35.0%
!! CACCCTTATGGAATTGATTT+TGG - chr2_1:18911522-18911541 Msa0199650:CDS 35.0%
!! ATTGATTTTGGAAAACCCAC+AGG - chr2_1:18911534-18911553 Msa0199650:CDS 35.0%
AGAACCGTTGTTGATGTTAT+AGG - chr2_1:18911573-18911592 Msa0199650:intron 35.0%
TGAACTATAAGAGCAACAAC+TGG - chr2_1:18911881-18911900 Msa0199650:CDS 35.0%
GAACTATAAGAGCAACAACT+GGG - chr2_1:18911882-18911901 Msa0199650:CDS 35.0%
TAAGCATTAGGAGACAAGTA+AGG + chr2_1:18911924-18911943 None:intergenic 35.0%
TACTTGTCTCCTAATGCTTA+TGG - chr2_1:18911924-18911943 Msa0199650:CDS 35.0%
ATCATCGATCCATAAGCATT+AGG + chr2_1:18911936-18911955 None:intergenic 35.0%
GATGCCCTAATAATTGAACT+TGG + chr2_1:18912063-18912082 None:intergenic 35.0%
! TAGGGCATCAAAATTCAACT+AGG - chr2_1:18912074-18912093 Msa0199650:CDS 35.0%
CATGATACAACATCAAACGA+TGG - chr2_1:18912400-18912419 Msa0199650:CDS 35.0%
!!! TATGCCGACTTTATTTTGTG+CGG + chr2_1:18912447-18912466 None:intergenic 35.0%
ATTTGTCTCAGAGATGAGAA+TGG - chr2_1:18912470-18912489 Msa0199650:intron 35.0%
ATTGACACAAGTGAAGCTAT+TGG - chr2_1:18912539-18912558 Msa0199650:intron 35.0%
ATTCGAAGTCTACATTCGTA+AGG + chr2_1:18912601-18912620 None:intergenic 35.0%
CGAATTAGATTCGAAGAATG+TGG - chr2_1:18912616-18912635 Msa0199650:intron 35.0%
GTGGAAACTAACTTTAGATG+TGG + chr2_1:18912798-18912817 None:intergenic 35.0%
ATGATGGTCACAAATGATTC+TGG + chr2_1:18913231-18913250 None:intergenic 35.0%
TGGTAAATGTTGGTCCTATT+GGG - chr2_1:18913444-18913463 Msa0199650:intron 35.0%
ATACATGGTATACACCCAAT+AGG + chr2_1:18913461-18913480 None:intergenic 35.0%
GGGTTTAAATCTCTCATACA+TGG + chr2_1:18913476-18913495 None:intergenic 35.0%
GGGTGTTAAATAATTGAGCT+AGG + chr2_1:18913535-18913554 None:intergenic 35.0%
CTCAACAAGGTTCTTCAATT+GGG + chr2_1:18913555-18913574 None:intergenic 35.0%
GGAATTGAGGACAAATTTGA+AGG - chr2_1:18913574-18913593 Msa0199650:CDS 35.0%
ATTGATTAACTGTTATGCCC+TGG - chr2_1:18913723-18913742 Msa0199650:intron 35.0%
ACGTTCTGCAATGATAACAT+TGG + chr2_1:18914091-18914110 None:intergenic 35.0%
AAGAGTTGCCAAACATTTGT+AGG + chr2_1:18914144-18914163 None:intergenic 35.0%
CCATTACAAAAACGACCTGT+GGG + chr2_1:18911552-18911571 None:intergenic 40.0%
TCCATTACAAAAACGACCTG+TGG + chr2_1:18911553-18911572 None:intergenic 40.0%
TAGGCTATGAAGCACAGATA+CGG - chr2_1:18911651-18911670 Msa0199650:intron 40.0%
GCTGGAATTCTCAATTACAC+TGG - chr2_1:18911987-18912006 Msa0199650:CDS 40.0%
!!! ATGCCGACTTTATTTTGTGC+GGG + chr2_1:18912446-18912465 None:intergenic 40.0%
GCACAAAATAAAGTCGGCAT+AGG - chr2_1:18912446-18912465 Msa0199650:CDS 40.0%
CACTAAGGGAGAAGATTTCT+TGG - chr2_1:18912652-18912671 Msa0199650:intron 40.0%
TTGGTATACTTCGACAGACT+TGG + chr2_1:18912694-18912713 None:intergenic 40.0%
GGTTTCCCACACTTTAGTTA+AGG - chr2_1:18912769-18912788 Msa0199650:intron 40.0%
GGATGCCTTAACTAAAGTGT+GGG + chr2_1:18912777-18912796 None:intergenic 40.0%
TGGATGCCTTAACTAAAGTG+TGG + chr2_1:18912778-18912797 None:intergenic 40.0%
GTTGCATGATGCAACAATTG+TGG + chr2_1:18912949-18912968 None:intergenic 40.0%
TCTCTCTTCACAGTAGCATT+TGG - chr2_1:18913138-18913157 Msa0199650:intron 40.0%
! CTTGATAACTATTTGGCACC+TGG - chr2_1:18913174-18913193 Msa0199650:intron 40.0%
!! AATTGCCACTCTGGAATTGA+GGG + chr2_1:18913201-18913220 None:intergenic 40.0%
!! TAATTGCCACTCTGGAATTG+AGG + chr2_1:18913202-18913221 None:intergenic 40.0%
AGGAGCCAGAAAAATTGTTG+TGG - chr2_1:18913424-18913443 Msa0199650:intron 40.0%
GTGGTAAATGTTGGTCCTAT+TGG - chr2_1:18913443-18913462 Msa0199650:intron 40.0%
CACACTTGTCTCCAGAAAAT+GGG + chr2_1:18913496-18913515 None:intergenic 40.0%
ACACACTTGTCTCCAGAAAA+TGG + chr2_1:18913497-18913516 None:intergenic 40.0%
CCTCAACAAGGTTCTTCAAT+TGG + chr2_1:18913556-18913575 None:intergenic 40.0%
CCAATTGAAGAACCTTGTTG+AGG - chr2_1:18913553-18913572 Msa0199650:CDS 40.0%
AGAACCTTGTTGAGGAATTG+AGG - chr2_1:18913561-18913580 Msa0199650:CDS 40.0%
TTGTCCTCAATTCCTCAACA+AGG + chr2_1:18913568-18913587 None:intergenic 40.0%
TGGAGATGCTTACCACATTA+TGG - chr2_1:18913613-18913632 Msa0199650:intron 40.0%
ATAACATTGGCAGCATCACT+AGG + chr2_1:18914078-18914097 None:intergenic 40.0%
GGTGATTCTTTGCTCGATGT+AGG - chr2_1:18911459-18911478 Msa0199650:CDS 45.0%
!!! CCCACAGGTCGTTTTTGTAA+TGG - chr2_1:18911549-18911568 Msa0199650:intron 45.0%
!! TACAAGTGTCGGTGTCATGT+CGG - chr2_1:18911741-18911760 Msa0199650:intron 45.0%
ACACGACACATGTCCAACAT+CGG - chr2_1:18911770-18911789 Msa0199650:intron 45.0%
GCATTAGGAGACAAGTAAGG+AGG + chr2_1:18911921-18911940 None:intergenic 45.0%
AATTATGCTTCTGCTGCAGC+TGG - chr2_1:18911969-18911988 Msa0199650:CDS 45.0%
CAACATCAAACGATGGGACA+TGG - chr2_1:18912407-18912426 Msa0199650:CDS 45.0%
!!! CTTTATTTTGTGCGGGGGAA+GGG + chr2_1:18912439-18912458 None:intergenic 45.0%
!!! ACTTTATTTTGTGCGGGGGA+AGG + chr2_1:18912440-18912459 None:intergenic 45.0%
TCCCCCGCACAAAATAAAGT+CGG - chr2_1:18912440-18912459 Msa0199650:CDS 45.0%
!!! TGCCGACTTTATTTTGTGCG+GGG + chr2_1:18912445-18912464 None:intergenic 45.0%
GGAGACAATAATTGCCACTC+TGG + chr2_1:18913210-18913229 None:intergenic 45.0%
TTGCAGCGGTTATTCACTCT+AGG - chr2_1:18913404-18913423 Msa0199650:intron 45.0%
GAGCTAGGTGATTAGGGAAT+TGG + chr2_1:18913520-18913539 None:intergenic 45.0%
TCTGCATGTTGTCACCTAGT+TGG - chr2_1:18913967-18913986 Msa0199650:CDS 45.0%
TGTCACCTAGTTGGTCGATT+TGG - chr2_1:18913976-18913995 Msa0199650:CDS 45.0%
CACGACACATGTCCAACATC+GGG - chr2_1:18911771-18911790 Msa0199650:intron 50.0%
GATTATGCGTGTCCCGATGT+TGG + chr2_1:18911786-18911805 None:intergenic 50.0%
ATCGGGACACGCATAATCTG+AGG - chr2_1:18911788-18911807 Msa0199650:intron 50.0%
!!! GCCGACTTTATTTTGTGCGG+GGG + chr2_1:18912444-18912463 None:intergenic 50.0%
!! CACCTAGTTGGTCGATTTGG+AGG - chr2_1:18913979-18913998 Msa0199650:CDS 50.0%
AGCCTCCAAATCGACCAACT+AGG + chr2_1:18913984-18914003 None:intergenic 50.0%
GCACAGATACGGACACGACA+CGG - chr2_1:18911662-18911681 Msa0199650:intron 55.0%
!! TGTCGGTGTCATGTCGGTGT+CGG - chr2_1:18911747-18911766 Msa0199650:intron 55.0%
!! CACTCTGGAATTGAGGGACC+AGG + chr2_1:18913195-18913214 None:intergenic 55.0%
CTGGTCCCTCAATTCCAGAG+TGG - chr2_1:18913193-18913212 Msa0199650:intron 55.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 18911298 18914207 18911298 ID=Msa0199650;Name=Msa0199650
chr2_1 mRNA 18911298 18914207 18911298 ID=Msa0199650-mRNA-1;Parent=Msa0199650;Name=Msa0199650-mRNA-1;_AED=0.08;_eAED=0.08;_QI=44|1|1|1|1|1|5|34|368
chr2_1 exon 18911298 18911555 18911298 ID=Msa0199650-mRNA-1:exon:7912;Parent=Msa0199650-mRNA-1
chr2_1 exon 18911840 18912095 18911840 ID=Msa0199650-mRNA-1:exon:7911;Parent=Msa0199650-mRNA-1
chr2_1 exon 18912227 18912472 18912227 ID=Msa0199650-mRNA-1:exon:7910;Parent=Msa0199650-mRNA-1
chr2_1 exon 18913486 18913613 18913486 ID=Msa0199650-mRNA-1:exon:7909;Parent=Msa0199650-mRNA-1
chr2_1 exon 18913911 18914207 18913911 ID=Msa0199650-mRNA-1:exon:7908;Parent=Msa0199650-mRNA-1
chr2_1 five_prime_UTR 18914164 18914207 18914164 ID=Msa0199650-mRNA-1:five_prime_utr;Parent=Msa0199650-mRNA-1
chr2_1 CDS 18913911 18914163 18913911 ID=Msa0199650-mRNA-1:cds;Parent=Msa0199650-mRNA-1
chr2_1 CDS 18913486 18913613 18913486 ID=Msa0199650-mRNA-1:cds;Parent=Msa0199650-mRNA-1
chr2_1 CDS 18912227 18912472 18912227 ID=Msa0199650-mRNA-1:cds;Parent=Msa0199650-mRNA-1
chr2_1 CDS 18911840 18912095 18911840 ID=Msa0199650-mRNA-1:cds;Parent=Msa0199650-mRNA-1
chr2_1 CDS 18911332 18911555 18911332 ID=Msa0199650-mRNA-1:cds;Parent=Msa0199650-mRNA-1
chr2_1 three_prime_UTR 18911298 18911331 18911298 ID=Msa0199650-mRNA-1:three_prime_utr;Parent=Msa0199650-mRNA-1
Gene Sequence

>Msa0199650

ATGGGTCTTTATAATTTGAGCATAAAACTCATTTTTGAGAATATGTTTAGGATTTTAACGTTATTGCTCTCTTTCAAATTTAGCTTATCAAATAAAATCCAAGCTTCATTTGTTTTTGGTGATTCTTTGCTCGATGTAGGAAATAACAATTACATCACTTCACTTGCCAAAGCAAATCATCACCCTTATGGAATTGATTTTGGAAAACCCACAGGTCGTTTTTGTAATGGAAGAACCGTTGTTGATGTTATAGAGCAACAACTGGGTCTTGATTATACTCCTCCTTACTTGTCTCCTAATGCTTATGGATCGATGATTCTAAAGGGTGTCAATTATGCTTCTGCTGCAGCTGGAATTCTCAATTACACTGGTCACATTTTTGTTGGTCGAATCAACTTTGATGCACAAATTGATAACTTTGCAAATACAAGAGAAGATATCATTAGCAAAATTGGTGTTCGTGCAGCTCTCAAATTGCTTAAGAATTCTCTCTTCACAGTAGCATTTGGCTCAAACGATTTTCTTGATAACTATTTGGCACCTGGTCCCTCAATTCCAGAGTGGCAATTATTGTCTCCAGAATCATTTGTGACCATCATGATATCAACATTCAGAGTACAAATAACCCGGTTATTCACTCTAGGAGCCAGAAAAATTGTTGTGGTAAATGTTGGTCCTATTGGGTGTATACCATGTATGAGAGATTTAAACCCATTTTCTGGAGACAAGTGTGTCCAATTCCCTAATCACCTAGCTCAATTATTTAACACCCAATTGAAGAACCTTGTTGAGGAATTGAGGACAAATTTGAAGGGTTCATTATTTGTTTATGGAGATGCTTACCACATTATGGAAGATATCATGATGAATTACAGTAAATATGGTTTCAAGAATACAAATTCTGCATGTTGTCACCTAGTTGGTCGATTTGGAGGCTTAATTCCATGTGATCGTTATTCAAAAGTTTGTGAAGATCGATCCAAGTATATTTATTGGGATACTTTTCATCCTAGTGATGCTGCCAATGTTATCATTGCAGAACGTTTATTAAATGGTGATGCTAATGATGTTTCACCTACAAATGTTTGGCAACTCTTGAAAGCTTGA
Protein sequence

>Msa0199650

MGLYNLSIKLIFENMFRILTLLLSFKFSLSNKIQASFVFGDSLLDVGNNNYITSLAKANHHPYGIDFGKPTGRFCNGRTVVDVIEQQLGLDYTPPYLSPNAYGSMILKGVNYASAAAGILNYTGHIFVGRINFDAQIDNFANTREDIISKIGVRAALKLLKNSLFTVAFGSNDFLDNYLAPGPSIPEWQLLSPESFVTIMISTFRVQITRLFTLGARKIVVVNVGPIGCIPCMRDLNPFSGDKCVQFPNHLAQLFNTQLKNLVEELRTNLKGSLFVYGDAYHIMEDIMMNYSKYGFKNTNSACCHLVGRFGGLIPCDRYSKVCEDRSKYIYWDTFHPSDAANVIIAERLLNGDANDVSPTNVWQLLKA*