Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0321120 | AFK39617.1 | 91.111 | 90 | 7 | 1 | 38 | 127 | 44 | 132 | 1.93e-46 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0321120 | sp|Q38967|AAP2_ARATH | 63.291 | 79 | 29 | 0 | 49 | 127 | 73 | 151 | 1.73e-28 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0321120 | Msa0953710 | 0.851581 | 8.083881e-61 | -8.615850e-47 |
| Msa0321120 | Msa1136700 | 0.956697 | 1.599544e-114 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0321120 | MtrunA17_Chr3g0130651 | 75.893 | 112 | 21 | 2 | 38 | 149 | 44 | 149 | 4.58e-50 | 166 |
| Msa0321120 | MtrunA17_Chr3g0130671 | 68.354 | 79 | 25 | 0 | 49 | 127 | 67 | 145 | 6.65e-32 | 115 |
| Msa0321120 | MtrunA17_Chr8g0384661 | 68.354 | 79 | 25 | 0 | 49 | 127 | 78 | 156 | 1.38e-30 | 115 |
| Msa0321120 | MtrunA17_Chr3g0125091 | 69.620 | 79 | 24 | 0 | 49 | 127 | 62 | 140 | 3.89e-30 | 113 |
| Msa0321120 | MtrunA17_Chr3g0125081 | 69.620 | 79 | 24 | 0 | 49 | 127 | 62 | 140 | 9.88e-30 | 112 |
| Msa0321120 | MtrunA17_Chr3g0130641 | 70.513 | 78 | 23 | 0 | 50 | 127 | 62 | 139 | 1.40e-29 | 112 |
| Msa0321120 | MtrunA17_Chr3g0125101 | 67.089 | 79 | 26 | 0 | 49 | 127 | 62 | 140 | 1.08e-28 | 109 |
| Msa0321120 | MtrunA17_Chr1g0159761 | 62.025 | 79 | 30 | 0 | 49 | 127 | 55 | 133 | 1.34e-27 | 106 |
| Msa0321120 | MtrunA17_Chr5g0402151 | 63.291 | 79 | 24 | 1 | 49 | 127 | 28 | 101 | 8.54e-26 | 99.0 |
| Msa0321120 | MtrunA17_Chr4g0037201 | 58.228 | 79 | 33 | 0 | 49 | 127 | 87 | 165 | 4.70e-25 | 99.8 |
| Msa0321120 | MtrunA17_Chr1g0146491 | 54.348 | 92 | 38 | 1 | 49 | 136 | 51 | 142 | 1.16e-24 | 98.6 |
| Msa0321120 | MtrunA17_Chr3g0140761 | 50.485 | 103 | 46 | 2 | 38 | 136 | 51 | 152 | 1.47e-24 | 98.2 |
| Msa0321120 | MtrunA17_Chr1g0146351 | 59.494 | 79 | 31 | 1 | 48 | 126 | 30 | 107 | 8.52e-24 | 89.7 |
| Msa0321120 | MtrunA17_Chr1g0206821 | 51.087 | 92 | 41 | 1 | 49 | 136 | 50 | 141 | 7.48e-22 | 90.9 |
| Msa0321120 | MtrunA17_Chr1g0206871 | 51.087 | 92 | 41 | 1 | 49 | 136 | 43 | 134 | 2.02e-21 | 89.4 |
| Msa0321120 | MtrunA17_Chr1g0146411 | 59.494 | 79 | 31 | 1 | 48 | 126 | 60 | 137 | 3.36e-21 | 89.0 |
| Msa0321120 | MtrunA17_Chr3g0140531 | 53.846 | 78 | 36 | 0 | 49 | 126 | 52 | 129 | 4.76e-20 | 85.5 |
| Msa0321120 | MtrunA17_Chr1g0212251 | 85.106 | 47 | 7 | 0 | 1 | 47 | 65 | 111 | 1.05e-19 | 84.7 |
| Msa0321120 | MtrunA17_Chr3g0140541 | 52.564 | 78 | 37 | 0 | 49 | 126 | 53 | 130 | 6.77e-19 | 82.4 |
| Msa0321120 | MtrunA17_Chr1g0212201 | 85.106 | 47 | 7 | 0 | 1 | 47 | 69 | 115 | 9.42e-19 | 82.0 |
| Msa0321120 | MtrunA17_Chr1g0146391 | 51.282 | 78 | 38 | 0 | 49 | 126 | 40 | 117 | 2.19e-18 | 80.9 |
| Msa0321120 | MtrunA17_Chr1g0146331 | 47.436 | 78 | 41 | 0 | 49 | 126 | 48 | 125 | 1.27e-17 | 78.6 |
| Msa0321120 | MtrunA17_Chr2g0293331 | 42.857 | 98 | 51 | 1 | 49 | 146 | 40 | 132 | 1.98e-17 | 78.2 |
| Msa0321120 | MtrunA17_Chr1g0212291 | 100.000 | 47 | 0 | 0 | 1 | 47 | 66 | 112 | 5.08e-16 | 74.3 |
| Msa0321120 | MtrunA17_Chr1g0206841 | 56.364 | 55 | 24 | 0 | 49 | 103 | 49 | 103 | 5.45e-15 | 66.6 |
| Msa0321120 | MtrunA17_Chr8g0390931 | 63.265 | 49 | 18 | 0 | 2 | 50 | 89 | 137 | 8.17e-14 | 67.8 |
| Msa0321120 | MtrunA17_Chr3g0103261 | 41.096 | 73 | 43 | 0 | 50 | 122 | 52 | 124 | 9.31e-14 | 65.1 |
| Msa0321120 | MtrunA17_Chr4g0054741 | 78.378 | 37 | 8 | 0 | 1 | 37 | 77 | 113 | 2.53e-13 | 66.2 |
| Msa0321120 | MtrunA17_Chr3g0103211 | 39.048 | 105 | 56 | 2 | 40 | 136 | 38 | 142 | 3.94e-13 | 65.9 |
| Msa0321120 | MtrunA17_Chr3g0103231 | 40.260 | 77 | 46 | 0 | 50 | 126 | 52 | 128 | 4.19e-13 | 65.9 |
| Msa0321120 | MtrunA17_Chr3g0103221 | 41.026 | 78 | 46 | 0 | 49 | 126 | 58 | 135 | 5.89e-13 | 65.5 |
| Msa0321120 | MtrunA17_Chr4g0054761 | 77.778 | 36 | 8 | 0 | 2 | 37 | 78 | 113 | 1.16e-12 | 62.0 |
| Msa0321120 | MtrunA17_Chr6g0484691 | 63.043 | 46 | 17 | 0 | 5 | 50 | 116 | 161 | 8.42e-12 | 62.0 |
| Msa0321120 | MtrunA17_Chr1g0206861 | 41.772 | 79 | 45 | 1 | 49 | 126 | 49 | 127 | 9.60e-12 | 59.3 |
| Msa0321120 | MtrunA17_Chr1g0188881 | 54.545 | 55 | 24 | 1 | 1 | 55 | 80 | 133 | 5.88e-11 | 59.7 |
| Msa0321120 | MtrunA17_Chr2g0321971 | 63.830 | 47 | 17 | 0 | 1 | 47 | 65 | 111 | 8.64e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0321120 | AT5G09220.1 | 63.291 | 79 | 29 | 0 | 49 | 127 | 73 | 151 | 1.76e-29 | 112 |
| Msa0321120 | AT5G63850.1 | 59.494 | 79 | 32 | 0 | 49 | 127 | 46 | 124 | 2.55e-29 | 111 |
| Msa0321120 | AT1G77380.1 | 66.667 | 78 | 26 | 0 | 50 | 127 | 58 | 135 | 2.30e-28 | 109 |
| Msa0321120 | AT1G44100.1 | 54.348 | 92 | 38 | 1 | 49 | 136 | 55 | 146 | 7.40e-27 | 105 |
| Msa0321120 | AT5G49630.1 | 53.398 | 103 | 43 | 2 | 38 | 136 | 50 | 151 | 3.69e-25 | 100 |
| Msa0321120 | AT1G58360.1 | 51.087 | 92 | 41 | 1 | 49 | 136 | 64 | 155 | 4.76e-24 | 97.4 |
| Msa0321120 | AT1G10010.1 | 51.087 | 92 | 41 | 1 | 49 | 136 | 55 | 146 | 5.67e-21 | 88.6 |
| Msa0321120 | AT1G10010.2 | 51.087 | 92 | 41 | 1 | 49 | 136 | 56 | 147 | 6.03e-21 | 88.6 |
| Msa0321120 | AT4G17970.1 | 78.723 | 47 | 10 | 0 | 1 | 47 | 67 | 113 | 6.02e-18 | 80.1 |
| Msa0321120 | AT5G46610.1 | 54.321 | 81 | 24 | 2 | 1 | 69 | 69 | 148 | 1.37e-17 | 79.0 |
| Msa0321120 | AT5G46600.1 | 53.086 | 81 | 25 | 2 | 1 | 69 | 70 | 149 | 1.83e-16 | 75.9 |
| Msa0321120 | AT5G23810.5 | 38.298 | 94 | 53 | 2 | 40 | 128 | 40 | 133 | 8.92e-14 | 66.6 |
| Msa0321120 | AT5G23810.3 | 38.298 | 94 | 53 | 2 | 40 | 128 | 40 | 133 | 8.92e-14 | 66.6 |
| Msa0321120 | AT5G23810.4 | 38.298 | 94 | 53 | 2 | 40 | 128 | 40 | 133 | 1.25e-13 | 66.6 |
| Msa0321120 | AT5G23810.2 | 35.185 | 108 | 61 | 3 | 40 | 142 | 40 | 143 | 2.25e-13 | 66.6 |
| Msa0321120 | AT5G23810.1 | 35.185 | 108 | 61 | 3 | 40 | 142 | 40 | 143 | 2.76e-13 | 66.6 |
| Msa0321120 | AT4G00910.1 | 34.270 | 178 | 82 | 8 | 1 | 154 | 86 | 252 | 3.06e-12 | 63.5 |
| Msa0321120 | AT1G08440.1 | 57.377 | 61 | 24 | 1 | 2 | 60 | 42 | 102 | 4.85e-12 | 63.2 |
Find 90 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGTCTGTGTGTTGGTTTC+TGG | 0.016885 | 2_4:+22192595 | Msa0321120:five_prime_UTR |
| GCTCAGTTGGTTTGGGTAAT+TGG | 0.223474 | 2_4:+22193174 | Msa0321120:CDS |
| CTACATGTTGAAGGCTAGTT+TGG | 0.257150 | 2_4:-22192439 | None:intergenic |
| CATTGGAGTGTTTGGGGTCT+GGG | 0.261166 | 2_4:+22194735 | Msa0321120:CDS |
| TGTTTCATTGTTGTATCTAA+TGG | 0.262149 | 2_4:+22192893 | Msa0321120:exon |
| GCATTGGAGTGTTTGGGGTC+TGG | 0.277520 | 2_4:+22194734 | Msa0321120:CDS |
| TTTGCGGTTTCGTCGGATCT+TGG | 0.277905 | 2_4:+22192567 | Msa0321120:five_prime_UTR |
| ATTGCGCGCATTGGAGTGTT+TGG | 0.298565 | 2_4:+22194727 | Msa0321120:CDS |
| TTGTAGAGACAAGTCCAATT+TGG | 0.299577 | 2_4:-22192310 | None:intergenic |
| GCCAGCAGCTGCTGTGGTGC+AGG | 0.303418 | 2_4:+22194704 | Msa0321120:CDS |
| AACTCTGTCAGCAGGATTAT+TGG | 0.318252 | 2_4:+22193146 | Msa0321120:CDS |
| TTGCGCGCATTGGAGTGTTT+GGG | 0.325274 | 2_4:+22194728 | Msa0321120:CDS |
| TCCTGCACCACAGCAGCTGC+TGG | 0.329371 | 2_4:-22194705 | None:intergenic |
| GAAGCTGTTCACACAATTCT+AGG | 0.331709 | 2_4:+22193309 | Msa0321120:CDS |
| GTTCAGTACACAAATCTTTA+CGG | 0.334346 | 2_4:+22193868 | Msa0321120:CDS |
| TGGTCATAGCTCAGTTGGTT+TGG | 0.340762 | 2_4:+22193166 | Msa0321120:CDS |
| TTGCGGTTTCGTCGGATCTT+GGG | 0.360644 | 2_4:+22192568 | Msa0321120:five_prime_UTR |
| AAAGGACTTAATAGAGGATT+AGG | 0.369561 | 2_4:+22193123 | Msa0321120:CDS |
| GGTCATAGCTCAGTTGGTTT+GGG | 0.381927 | 2_4:+22193167 | Msa0321120:CDS |
| CGAATTGGTGATCCTCATTA+CGG | 0.382440 | 2_4:+22193264 | Msa0321120:CDS |
| TCTATTAAGTCCTTTGCATA+AGG | 0.384312 | 2_4:-22193115 | None:intergenic |
| TCTCTTGCTCCTGCTTGATT+CGG | 0.386260 | 2_4:-22192620 | None:intergenic |
| CCTTCAACATGTAGATCCTT+TGG | 0.390436 | 2_4:+22192448 | Msa0321120:five_prime_UTR |
| TTCTTCCTCACGAATCGGTT+GGG | 0.392342 | 2_4:-22192708 | None:intergenic |
| AATCTTTACGGAACTGCAAT+AGG | 0.394383 | 2_4:+22193880 | Msa0321120:CDS |
| TTAGCTGAGTGTTATCGAAT+TGG | 0.397058 | 2_4:+22193249 | Msa0321120:CDS |
| GTTTCGTCGGATCTTGGGTT+TGG | 0.402535 | 2_4:+22192573 | Msa0321120:five_prime_UTR |
| CCAATCATTCATTCACGAAA+AGG | 0.404191 | 2_4:+22192655 | Msa0321120:five_prime_UTR |
| CGTTCTTCTTCCTCACGAAT+CGG | 0.405285 | 2_4:-22192713 | None:intergenic |
| GCTGCTGCCAGCAGCTGCTG+TGG | 0.406003 | 2_4:+22194698 | Msa0321120:CDS |
| CTTCTTCCTCACGAATCGGT+TGG | 0.416506 | 2_4:-22192709 | None:intergenic |
| TGAAGGCTAGTTTGGATTTG+AGG | 0.418168 | 2_4:-22192431 | None:intergenic |
| GGTTGTTTGTAGAGAGGAGG+AGG | 0.421060 | 2_4:-22192382 | None:intergenic |
| AAAGAGACTAGATCTAGGTT+TGG | 0.424811 | 2_4:-22192846 | None:intergenic |
| GATCTAGTCTCTTTGAAAGT+TGG | 0.427384 | 2_4:+22192855 | Msa0321120:five_prime_UTR |
| GCAATAGGATACACAATTGC+GGG | 0.428317 | 2_4:+22193895 | Msa0321120:CDS |
| AAAGAGGAACTATACTTTCA+TGG | 0.430550 | 2_4:+22193287 | Msa0321120:CDS |
| CTGACGGAGAGAAGTTGATC+TGG | 0.430791 | 2_4:-22192535 | None:intergenic |
| CTTTCAAAGAGACTAGATCT+AGG | 0.432292 | 2_4:-22192851 | None:intergenic |
| TTACCTCTTTCGATTCTGTT+CGG | 0.438439 | 2_4:-22192765 | None:intergenic |
| TCCTTTGGCTGGTGGTGCGA+TGG | 0.445597 | 2_4:+22192463 | Msa0321120:five_prime_UTR |
| GGGGTCTGGGTTTGATGCTG+TGG | 0.446369 | 2_4:+22194748 | Msa0321120:CDS |
| TAATGGAACCATTGTACAAA+GGG | 0.453257 | 2_4:+22192910 | Msa0321120:exon |
| AGCAGGAGCAAGAGAGGAAG+TGG | 0.456569 | 2_4:+22192628 | Msa0321120:five_prime_UTR |
| TGGGGTTGTTTGTAGAGAGG+AGG | 0.464294 | 2_4:-22192385 | None:intergenic |
| GGTTTCAATGACACCCTTTG+TGG | 0.466023 | 2_4:+22193841 | Msa0321120:CDS |
| TAGTTCCTCTTTCCGTAATG+AGG | 0.476378 | 2_4:-22193276 | None:intergenic |
| TGCTGTGGTGTGGTATGCGT+AGG | 0.480584 | 2_4:+22194763 | Msa0321120:CDS |
| CCAAAGGATCTACATGTTGA+AGG | 0.485295 | 2_4:-22192448 | None:intergenic |
| TTATGCAAAGGACTTAATAG+AGG | 0.486073 | 2_4:+22193117 | Msa0321120:CDS |
| AACAACACAAACGTTCAAAT+CGG | 0.490303 | 2_4:+22192678 | Msa0321120:five_prime_UTR |
| TTTCCTATCCCTTTGTACAA+TGG | 0.496607 | 2_4:-22192918 | None:intergenic |
| GGGTTTGGCTGTCTGTGTGT+TGG | 0.497111 | 2_4:+22192588 | Msa0321120:five_prime_UTR |
| AACGAGGGGCGCTGGTGGTG+CGG | 0.501184 | 2_4:-22192494 | None:intergenic |
| TGGTGCAGGATTGCGCGCAT+TGG | 0.513268 | 2_4:+22194718 | Msa0321120:CDS |
| CCTTTGGCTGGTGGTGCGAT+GGG | 0.513598 | 2_4:+22192464 | Msa0321120:five_prime_UTR |
| TGCGCGCATTGGAGTGTTTG+GGG | 0.516069 | 2_4:+22194729 | Msa0321120:CDS |
| CAACATGTAGATCCTTTGGC+TGG | 0.521078 | 2_4:+22192452 | Msa0321120:five_prime_UTR |
| GCTGTGGTGTGGTATGCGTA+GGG | 0.524060 | 2_4:+22194764 | Msa0321120:CDS |
| GTTTGGGGTTGTTTGTAGAG+AGG | 0.524595 | 2_4:-22192388 | None:intergenic |
| CATGACTGTGGTTGTCGTCA+TGG | 0.525879 | 2_4:+22192959 | Msa0321120:CDS |
| GGATTAGGAACTCTGTCAGC+AGG | 0.527709 | 2_4:+22193138 | Msa0321120:CDS |
| GTTTCAATGACACCCTTTGT+GGG | 0.537172 | 2_4:+22193842 | Msa0321120:CDS |
| GAATCGAAAGAGGTAAATAG+AGG | 0.537468 | 2_4:+22192772 | Msa0321120:five_prime_UTR |
| GAACCATTGTACAAAGGGAT+AGG | 0.540699 | 2_4:+22192915 | Msa0321120:CDS |
| GAATCAAGCAGGAGCAAGAG+AGG | 0.542256 | 2_4:+22192622 | Msa0321120:five_prime_UTR |
| ACGAGAAGAACGAGGGGCGC+TGG | 0.545060 | 2_4:-22192502 | None:intergenic |
| ATTATTGGTCATAGCTCAGT+TGG | 0.551033 | 2_4:+22193161 | Msa0321120:CDS |
| GTGATCCTCATTACGGAAAG+AGG | 0.563476 | 2_4:+22193271 | Msa0321120:CDS |
| TTTCTGGAACCGAATCAAGC+AGG | 0.568528 | 2_4:+22192611 | Msa0321120:five_prime_UTR |
| AGGCTAGTTTGGATTTGAGG+AGG | 0.571649 | 2_4:-22192428 | None:intergenic |
| GTACTGAACTATCCCACAAA+GGG | 0.571823 | 2_4:-22193854 | None:intergenic |
| CTGGGTTTGATGCTGTGGTG+TGG | 0.576682 | 2_4:+22194753 | Msa0321120:CDS |
| AAACCGAACAGAATCGAAAG+AGG | 0.586011 | 2_4:+22192762 | Msa0321120:five_prime_UTR |
| CTGAAGAAAATCATAACAGA+AGG | 0.590235 | 2_4:-22193198 | None:intergenic |
| AGAAGAACGAGGGGCGCTGG+TGG | 0.591627 | 2_4:-22192499 | None:intergenic |
| CATGTAGATCCTTTGGCTGG+TGG | 0.594338 | 2_4:+22192455 | Msa0321120:five_prime_UTR |
| CTGTGGTGTGGTATGCGTAG+GGG | 0.597558 | 2_4:+22194765 | Msa0321120:CDS |
| CTAATGGAACCATTGTACAA+AGG | 0.603339 | 2_4:+22192909 | Msa0321120:exon |
| TGCAATAGGATACACAATTG+CGG | 0.626230 | 2_4:+22193894 | Msa0321120:CDS |
| GAAGTACGACGAGAAGAACG+AGG | 0.629101 | 2_4:-22192510 | None:intergenic |
| GTCGTCATGGAGTTTACAGT+AGG | 0.630287 | 2_4:+22192972 | Msa0321120:CDS |
| GCAGGAGGAACCTTATGCAA+AGG | 0.631495 | 2_4:+22193105 | Msa0321120:intron |
| AAGTACGACGAGAAGAACGA+GGG | 0.638260 | 2_4:-22192509 | None:intergenic |
| CCCATCGCACCACCAGCCAA+AGG | 0.639211 | 2_4:-22192464 | None:intergenic |
| TGTTGTGGCTGTCATGACTG+TGG | 0.668854 | 2_4:+22192947 | Msa0321120:CDS |
| TGTACTGAACTATCCCACAA+AGG | 0.675008 | 2_4:-22193855 | None:intergenic |
| TAGATCCCAACCGATTCGTG+AGG | 0.688257 | 2_4:+22192703 | Msa0321120:five_prime_UTR |
| CGATTCGTGAGGAAGAAGAA+CGG | 0.690086 | 2_4:+22192714 | Msa0321120:five_prime_UTR |
| AGTACGACGAGAAGAACGAG+GGG | 0.710390 | 2_4:-22192508 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATAGTATAATTTTGAAA+TGG | + | chr2_4:22193766-22193785 | Msa0321120:intron | 10.0% |
| !!! | TTTTTAGTCTTTTTTTTTTT+AGG | + | chr2_4:22193946-22193965 | Msa0321120:intron | 10.0% |
| !!! | AAATCAATATCAATTTTTTT+GGG | - | chr2_4:22194022-22194041 | None:intergenic | 10.0% |
| !!! | AAAATCAATATCAATTTTTT+TGG | - | chr2_4:22194023-22194042 | None:intergenic | 10.0% |
| !! | TATAATAACTGATATAATAA+TGG | - | chr2_4:22194528-22194547 | None:intergenic | 10.0% |
| !!! | AGTTATATTAAAGATTTTGA+GGG | - | chr2_4:22194083-22194102 | None:intergenic | 15.0% |
| !!! | AAGTTATATTAAAGATTTTG+AGG | - | chr2_4:22194084-22194103 | None:intergenic | 15.0% |
| !! | ATCAAATATTATTAATAGCT+AGG | - | chr2_4:22194381-22194400 | None:intergenic | 15.0% |
| !!! | TCAAGTAATATTTTAGAAAG+AGG | - | chr2_4:22192337-22192356 | None:intergenic | 20.0% |
| !!! | AGAACGATTATTTTAGAAAG+AGG | - | chr2_4:22192362-22192381 | None:intergenic | 25.0% |
| ! | TGTTTCATTGTTGTATCTAA+TGG | + | chr2_4:22192893-22192912 | Msa0321120:exon | 25.0% |
| ! | TAGGTATTAAATATGATTGC+AGG | + | chr2_4:22193087-22193106 | Msa0321120:intron | 25.0% |
| ! | ATAATCGAAACGAATCAAAT+TGG | + | chr2_4:22193376-22193395 | Msa0321120:intron | 25.0% |
| ! | TTCTAGTAGTGATTAAATTC+TGG | - | chr2_4:22193590-22193609 | None:intergenic | 25.0% |
| !!! | TTTTATTTAGACTTTTGAGG+CGG | - | chr2_4:22194050-22194069 | None:intergenic | 25.0% |
| !!! | GCTTTTTATTTAGACTTTTG+AGG | - | chr2_4:22194053-22194072 | None:intergenic | 25.0% |
| ! | AATAAAATACCCCCTAAAAT+CGG | - | chr2_4:22194271-22194290 | None:intergenic | 25.0% |
| !!! | GTATTTTATTGAGTTGTTGT+AGG | + | chr2_4:22194281-22194300 | Msa0321120:intron | 25.0% |
| AACAACACAAACGTTCAAAT+CGG | + | chr2_4:22192678-22192697 | Msa0321120:five_prime_UTR | 30.0% | |
| CGAAAAAAAGTTTGAACAGA+AGG | - | chr2_4:22192821-22192840 | None:intergenic | 30.0% | |
| TAATGGAACCATTGTACAAA+GGG | + | chr2_4:22192910-22192929 | Msa0321120:exon | 30.0% | |
| TGTTAAGATTACAGTCTCAT+AGG | + | chr2_4:22193068-22193087 | Msa0321120:intron | 30.0% | |
| GTATTAAATATGATTGCAGG+AGG | + | chr2_4:22193090-22193109 | Msa0321120:intron | 30.0% | |
| TCTATTAAGTCCTTTGCATA+AGG | - | chr2_4:22193118-22193137 | None:intergenic | 30.0% | |
| TTATGCAAAGGACTTAATAG+AGG | + | chr2_4:22193117-22193136 | Msa0321120:CDS | 30.0% | |
| AAAGGACTTAATAGAGGATT+AGG | + | chr2_4:22193123-22193142 | Msa0321120:CDS | 30.0% | |
| CTGAAGAAAATCATAACAGA+AGG | - | chr2_4:22193201-22193220 | None:intergenic | 30.0% | |
| AAAGAGGAACTATACTTTCA+TGG | + | chr2_4:22193287-22193306 | Msa0321120:CDS | 30.0% | |
| AACTGTGAAGTAAGTGTTTA+TGG | + | chr2_4:22193415-22193434 | Msa0321120:intron | 30.0% | |
| CTAGTTTAAACTGCTCAAAA+GGG | - | chr2_4:22193476-22193495 | None:intergenic | 30.0% | |
| !! | TGATTTGGTCATATACTTCT+TGG | + | chr2_4:22193631-22193650 | Msa0321120:intron | 30.0% |
| ! | TGAGAATCAAATGATTTTGC+AGG | + | chr2_4:22193817-22193836 | Msa0321120:intron | 30.0% |
| GTTCAGTACACAAATCTTTA+CGG | + | chr2_4:22193868-22193887 | Msa0321120:CDS | 30.0% | |
| AGGAAACACAACAAAATTGA+GGG | - | chr2_4:22194114-22194133 | None:intergenic | 30.0% | |
| !! | TTTTATTGAGTTGTTGTAGG+TGG | + | chr2_4:22194284-22194303 | Msa0321120:intron | 30.0% |
| !! | ATTGTTGTTGTCTTCTGTTT+TGG | + | chr2_4:22194587-22194606 | Msa0321120:intron | 30.0% |
| ! | AGAAAAAGTGAAGTCGGTTT+GGG | - | chr2_4:22192407-22192426 | None:intergenic | 35.0% |
| AAGAAAAAGTGAAGTCGGTT+TGG | - | chr2_4:22192408-22192427 | None:intergenic | 35.0% | |
| ! | CCTTTTCGTGAATGAATGAT+TGG | - | chr2_4:22192658-22192677 | None:intergenic | 35.0% |
| CCAATCATTCATTCACGAAA+AGG | + | chr2_4:22192655-22192674 | Msa0321120:five_prime_UTR | 35.0% | |
| TTACCTCTTTCGATTCTGTT+CGG | - | chr2_4:22192768-22192787 | None:intergenic | 35.0% | |
| GAATCGAAAGAGGTAAATAG+AGG | + | chr2_4:22192772-22192791 | Msa0321120:five_prime_UTR | 35.0% | |
| AAAGAGACTAGATCTAGGTT+TGG | - | chr2_4:22192849-22192868 | None:intergenic | 35.0% | |
| CTTTCAAAGAGACTAGATCT+AGG | - | chr2_4:22192854-22192873 | None:intergenic | 35.0% | |
| ! | GATCTAGTCTCTTTGAAAGT+TGG | + | chr2_4:22192855-22192874 | Msa0321120:five_prime_UTR | 35.0% |
| CTAATGGAACCATTGTACAA+AGG | + | chr2_4:22192909-22192928 | Msa0321120:exon | 35.0% | |
| TTTCCTATCCCTTTGTACAA+TGG | - | chr2_4:22192921-22192940 | None:intergenic | 35.0% | |
| GATAGGAAAAAATGCTGTTG+TGG | + | chr2_4:22192932-22192951 | Msa0321120:CDS | 35.0% | |
| ATTATTGGTCATAGCTCAGT+TGG | + | chr2_4:22193161-22193180 | Msa0321120:CDS | 35.0% | |
| TTAGCTGAGTGTTATCGAAT+TGG | + | chr2_4:22193249-22193268 | Msa0321120:CDS | 35.0% | |
| ! | GCTAGTTTAAACTGCTCAAA+AGG | - | chr2_4:22193477-22193496 | None:intergenic | 35.0% |
| ! | GAATCAAATGATTTTGCAGG+AGG | + | chr2_4:22193820-22193839 | Msa0321120:intron | 35.0% |
| AATCTTTACGGAACTGCAAT+AGG | + | chr2_4:22193880-22193899 | Msa0321120:CDS | 35.0% | |
| TGCAATAGGATACACAATTG+CGG | + | chr2_4:22193894-22193913 | Msa0321120:CDS | 35.0% | |
| CAGGAAACACAACAAAATTG+AGG | - | chr2_4:22194115-22194134 | None:intergenic | 35.0% | |
| ! | TACTCTTTTTCCTCCTTTTG+CGG | + | chr2_4:22194336-22194355 | Msa0321120:intron | 35.0% |
| !! | GAAAAAGTGAAGTCGGTTTG+GGG | - | chr2_4:22192406-22192425 | None:intergenic | 40.0% |
| GGAGGAAGAAAAAGTGAAGT+CGG | - | chr2_4:22192413-22192432 | None:intergenic | 40.0% | |
| !! | TGAAGGCTAGTTTGGATTTG+AGG | - | chr2_4:22192434-22192453 | None:intergenic | 40.0% |
| ! | CTACATGTTGAAGGCTAGTT+TGG | - | chr2_4:22192442-22192461 | None:intergenic | 40.0% |
| CCAAAGGATCTACATGTTGA+AGG | - | chr2_4:22192451-22192470 | None:intergenic | 40.0% | |
| CCTTCAACATGTAGATCCTT+TGG | + | chr2_4:22192448-22192467 | Msa0321120:five_prime_UTR | 40.0% | |
| CCGCAAAAACTCAAATCTGA+CGG | - | chr2_4:22192554-22192573 | None:intergenic | 40.0% | |
| !! | CCGTCAGATTTGAGTTTTTG+CGG | + | chr2_4:22192551-22192570 | Msa0321120:five_prime_UTR | 40.0% |
| ! | TTGAGTTTTTGCGGTTTCGT+CGG | + | chr2_4:22192560-22192579 | Msa0321120:five_prime_UTR | 40.0% |
| AAACCGAACAGAATCGAAAG+AGG | + | chr2_4:22192762-22192781 | Msa0321120:five_prime_UTR | 40.0% | |
| GAACCATTGTACAAAGGGAT+AGG | + | chr2_4:22192915-22192934 | Msa0321120:CDS | 40.0% | |
| TCATGGAGTTTACAGTAGGT+AGG | + | chr2_4:22192976-22192995 | Msa0321120:intron | 40.0% | |
| AACTCTGTCAGCAGGATTAT+TGG | + | chr2_4:22193146-22193165 | Msa0321120:CDS | 40.0% | |
| ! | TTTTCTTCAGTCTCATCACG+TGG | + | chr2_4:22193211-22193230 | Msa0321120:CDS | 40.0% |
| ! | CGAATTGGTGATCCTCATTA+CGG | + | chr2_4:22193264-22193283 | Msa0321120:CDS | 40.0% |
| TAGTTCCTCTTTCCGTAATG+AGG | - | chr2_4:22193279-22193298 | None:intergenic | 40.0% | |
| GAAGCTGTTCACACAATTCT+AGG | + | chr2_4:22193309-22193328 | Msa0321120:CDS | 40.0% | |
| TCACACGTTTGCACTTGATT+TGG | + | chr2_4:22193616-22193635 | Msa0321120:intron | 40.0% | |
| GTTTCAATGACACCCTTTGT+GGG | + | chr2_4:22193842-22193861 | Msa0321120:CDS | 40.0% | |
| GTACTGAACTATCCCACAAA+GGG | - | chr2_4:22193857-22193876 | None:intergenic | 40.0% | |
| TGTACTGAACTATCCCACAA+AGG | - | chr2_4:22193858-22193877 | None:intergenic | 40.0% | |
| GCAATAGGATACACAATTGC+GGG | + | chr2_4:22193895-22193914 | Msa0321120:CDS | 40.0% | |
| GATCACTCACATCATGCTAA+TGG | - | chr2_4:22193923-22193942 | None:intergenic | 40.0% | |
| !! | TTGTTTTTCTGTAGTGCAGC+TGG | + | chr2_4:22194214-22194233 | Msa0321120:intron | 40.0% |
| !!! | TCAGTTTTGGGACCGATTTT+AGG | + | chr2_4:22194256-22194275 | Msa0321120:intron | 40.0% |
| !!! | CAGTTTTGGGACCGATTTTA+GGG | + | chr2_4:22194257-22194276 | Msa0321120:intron | 40.0% |
| !!! | AGTTTTGGGACCGATTTTAG+GGG | + | chr2_4:22194258-22194277 | Msa0321120:intron | 40.0% |
| ! | TTGAGTTGTTGTAGGTGGTA+AGG | + | chr2_4:22194289-22194308 | Msa0321120:intron | 40.0% |
| TGAGTTGTTGTAGGTGGTAA+GGG | + | chr2_4:22194290-22194309 | Msa0321120:intron | 40.0% | |
| ! | ACTCTTTTTCCTCCTTTTGC+GGG | + | chr2_4:22194337-22194356 | Msa0321120:intron | 40.0% |
| !!! | TTCTGTTTTGGTCTGTTGTG+TGG | + | chr2_4:22194599-22194618 | Msa0321120:intron | 40.0% |
| !!! | TGGTCTGTTGTGTGGTTTTT+TGG | + | chr2_4:22194607-22194626 | Msa0321120:intron | 40.0% |
| !!! | GGTTTTTTGGTGTTGATAGC+AGG | + | chr2_4:22194620-22194639 | Msa0321120:intron | 40.0% |
| ! | GTTTGGGGTTGTTTGTAGAG+AGG | - | chr2_4:22192391-22192410 | None:intergenic | 45.0% |
| !! | AGGCTAGTTTGGATTTGAGG+AGG | - | chr2_4:22192431-22192450 | None:intergenic | 45.0% |
| CAACATGTAGATCCTTTGGC+TGG | + | chr2_4:22192452-22192471 | Msa0321120:five_prime_UTR | 45.0% | |
| AAGTACGACGAGAAGAACGA+GGG | - | chr2_4:22192512-22192531 | None:intergenic | 45.0% | |
| !! | TTTCTGGAACCGAATCAAGC+AGG | + | chr2_4:22192611-22192630 | Msa0321120:five_prime_UTR | 45.0% |
| TCTCTTGCTCCTGCTTGATT+CGG | - | chr2_4:22192623-22192642 | None:intergenic | 45.0% | |
| TTCTTCCTCACGAATCGGTT+GGG | - | chr2_4:22192711-22192730 | None:intergenic | 45.0% | |
| CGTTCTTCTTCCTCACGAAT+CGG | - | chr2_4:22192716-22192735 | None:intergenic | 45.0% | |
| CGATTCGTGAGGAAGAAGAA+CGG | + | chr2_4:22192714-22192733 | Msa0321120:five_prime_UTR | 45.0% | |
| GTCGTCATGGAGTTTACAGT+AGG | + | chr2_4:22192972-22192991 | Msa0321120:CDS | 45.0% | |
| TGGTCATAGCTCAGTTGGTT+TGG | + | chr2_4:22193166-22193185 | Msa0321120:CDS | 45.0% | |
| ! | GGTCATAGCTCAGTTGGTTT+GGG | + | chr2_4:22193167-22193186 | Msa0321120:CDS | 45.0% |
| !! | GCTCAGTTGGTTTGGGTAAT+TGG | + | chr2_4:22193174-22193193 | Msa0321120:CDS | 45.0% |
| GTGATCCTCATTACGGAAAG+AGG | + | chr2_4:22193271-22193290 | Msa0321120:CDS | 45.0% | |
| GGTTTCAATGACACCCTTTG+TGG | + | chr2_4:22193841-22193860 | Msa0321120:CDS | 45.0% | |
| !!! | GTTTTGGGACCGATTTTAGG+GGG | + | chr2_4:22194259-22194278 | Msa0321120:intron | 45.0% |
| CACAAGAGCCTAACAACAAG+AGG | - | chr2_4:22194316-22194335 | None:intergenic | 45.0% | |
| AAGATGCACAAACCCGCAAA+AGG | - | chr2_4:22194352-22194371 | None:intergenic | 45.0% | |
| !! | TCTTCTGTTTGAGTTGCTGC+TGG | + | chr2_4:22194650-22194669 | Msa0321120:intron | 45.0% |
| GGTTGTTTGTAGAGAGGAGG+AGG | - | chr2_4:22192385-22192404 | None:intergenic | 50.0% | |
| TGGGGTTGTTTGTAGAGAGG+AGG | - | chr2_4:22192388-22192407 | None:intergenic | 50.0% | |
| CATGTAGATCCTTTGGCTGG+TGG | + | chr2_4:22192455-22192474 | Msa0321120:five_prime_UTR | 50.0% | |
| AGTACGACGAGAAGAACGAG+GGG | - | chr2_4:22192511-22192530 | None:intergenic | 50.0% | |
| GAAGTACGACGAGAAGAACG+AGG | - | chr2_4:22192513-22192532 | None:intergenic | 50.0% | |
| ! | CTGACGGAGAGAAGTTGATC+TGG | - | chr2_4:22192538-22192557 | None:intergenic | 50.0% |
| TTTGCGGTTTCGTCGGATCT+TGG | + | chr2_4:22192567-22192586 | Msa0321120:five_prime_UTR | 50.0% | |
| TTGCGGTTTCGTCGGATCTT+GGG | + | chr2_4:22192568-22192587 | Msa0321120:five_prime_UTR | 50.0% | |
| GTTTCGTCGGATCTTGGGTT+TGG | + | chr2_4:22192573-22192592 | Msa0321120:five_prime_UTR | 50.0% | |
| !! | GCTGTCTGTGTGTTGGTTTC+TGG | + | chr2_4:22192595-22192614 | Msa0321120:five_prime_UTR | 50.0% |
| GAATCAAGCAGGAGCAAGAG+AGG | + | chr2_4:22192622-22192641 | Msa0321120:five_prime_UTR | 50.0% | |
| !! | TAGATCCCAACCGATTCGTG+AGG | + | chr2_4:22192703-22192722 | Msa0321120:five_prime_UTR | 50.0% |
| CTTCTTCCTCACGAATCGGT+TGG | - | chr2_4:22192712-22192731 | None:intergenic | 50.0% | |
| TGTTGTGGCTGTCATGACTG+TGG | + | chr2_4:22192947-22192966 | Msa0321120:CDS | 50.0% | |
| CATGACTGTGGTTGTCGTCA+TGG | + | chr2_4:22192959-22192978 | Msa0321120:CDS | 50.0% | |
| GCAGGAGGAACCTTATGCAA+AGG | + | chr2_4:22193105-22193124 | Msa0321120:intron | 50.0% | |
| GGATTAGGAACTCTGTCAGC+AGG | + | chr2_4:22193138-22193157 | Msa0321120:CDS | 50.0% | |
| GCTGGTTGTATGTCCTGGTT+CGG | + | chr2_4:22194232-22194251 | Msa0321120:intron | 50.0% | |
| !!! | TCCTGGTTCGGCTCAGTTTT+GGG | + | chr2_4:22194244-22194263 | Msa0321120:intron | 50.0% |
| !! | GGTAAGGGCCTCTTGTTGTT+AGG | + | chr2_4:22194305-22194324 | Msa0321120:intron | 50.0% |
| ATGCACAAACCCGCAAAAGG+AGG | - | chr2_4:22194349-22194368 | None:intergenic | 50.0% | |
| ! | ATTGCGCGCATTGGAGTGTT+TGG | + | chr2_4:22194727-22194746 | Msa0321120:CDS | 50.0% |
| ! | TTGCGCGCATTGGAGTGTTT+GGG | + | chr2_4:22194728-22194747 | Msa0321120:CDS | 50.0% |
| ! | CATTGGAGTGTTTGGGGTCT+GGG | + | chr2_4:22194735-22194754 | Msa0321120:CDS | 50.0% |
| GGGTTTGGCTGTCTGTGTGT+TGG | + | chr2_4:22192588-22192607 | Msa0321120:five_prime_UTR | 55.0% | |
| AGCAGGAGCAAGAGAGGAAG+TGG | + | chr2_4:22192628-22192647 | Msa0321120:five_prime_UTR | 55.0% | |
| AGTGCAGTCTGGTTGTGCTG+TGG | + | chr2_4:22194155-22194174 | Msa0321120:intron | 55.0% | |
| GTGCAGCTGGTTGTATGTCC+TGG | + | chr2_4:22194227-22194246 | Msa0321120:intron | 55.0% | |
| !!! | GTCCTGGTTCGGCTCAGTTT+TGG | + | chr2_4:22194243-22194262 | Msa0321120:intron | 55.0% |
| TCCCAAAACTGAGCCGAACC+AGG | - | chr2_4:22194248-22194267 | None:intergenic | 55.0% | |
| ! | TGCGCGCATTGGAGTGTTTG+GGG | + | chr2_4:22194729-22194748 | Msa0321120:CDS | 55.0% |
| ! | GCATTGGAGTGTTTGGGGTC+TGG | + | chr2_4:22194734-22194753 | Msa0321120:CDS | 55.0% |
| CTGGGTTTGATGCTGTGGTG+TGG | + | chr2_4:22194753-22194772 | Msa0321120:CDS | 55.0% | |
| ! | TCCTTTGGCTGGTGGTGCGA+TGG | + | chr2_4:22192463-22192482 | Msa0321120:five_prime_UTR | 60.0% |
| ! | CCTTTGGCTGGTGGTGCGAT+GGG | + | chr2_4:22192464-22192483 | Msa0321120:five_prime_UTR | 60.0% |
| GTGTTTCCTGCGTGCTGCAC+CGG | + | chr2_4:22194125-22194144 | Msa0321120:intron | 60.0% | |
| TCTGGTTGTGCTGTGGCAGC+AGG | + | chr2_4:22194162-22194181 | Msa0321120:intron | 60.0% | |
| TTGTGCTGTGGCAGCAGGAG+TGG | + | chr2_4:22194167-22194186 | Msa0321120:intron | 60.0% | |
| CTGCTGGCAGCAGCAACAAC+TGG | - | chr2_4:22194692-22194711 | None:intergenic | 60.0% | |
| TGGTGCAGGATTGCGCGCAT+TGG | + | chr2_4:22194718-22194737 | Msa0321120:CDS | 60.0% | |
| GGGGTCTGGGTTTGATGCTG+TGG | + | chr2_4:22194748-22194767 | Msa0321120:CDS | 60.0% | |
| CCCATCGCACCACCAGCCAA+AGG | - | chr2_4:22192467-22192486 | None:intergenic | 65.0% | |
| !! | AGAAGAACGAGGGGCGCTGG+TGG | - | chr2_4:22192502-22192521 | None:intergenic | 65.0% |
| ! | ACGAGAAGAACGAGGGGCGC+TGG | - | chr2_4:22192505-22192524 | None:intergenic | 65.0% |
| CCAGACTGCACTGCAGCAGC+CGG | - | chr2_4:22194147-22194166 | None:intergenic | 65.0% | |
| TCCTGCACCACAGCAGCTGC+TGG | - | chr2_4:22194708-22194727 | None:intergenic | 65.0% | |
| !! | AACGAGGGGCGCTGGTGGTG+CGG | - | chr2_4:22192497-22192516 | None:intergenic | 70.0% |
| CCGGCTGCTGCAGTGCAGTC+TGG | + | chr2_4:22194144-22194163 | Msa0321120:intron | 70.0% | |
| GCTGCTGCCAGCAGCTGCTG+TGG | + | chr2_4:22194698-22194717 | Msa0321120:CDS | 70.0% | |
| GCCAGCAGCTGCTGTGGTGC+AGG | + | chr2_4:22194704-22194723 | Msa0321120:CDS | 70.0% | |
| CAGCAGCCGGTGCAGCACGC+AGG | - | chr2_4:22194134-22194153 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 22192313 | 22194784 | 22192313 | ID=Msa0321120;Name=Msa0321120 |
| chr2_4 | mRNA | 22192313 | 22194784 | 22192313 | ID=Msa0321120-mRNA-1;Parent=Msa0321120;Name=Msa0321120-mRNA-1;_AED=0.17;_eAED=0.24;_QI=599|0.66|0.5|1|0.66|0.75|4|0|157 |
| chr2_4 | exon | 22192313 | 22192993 | 22192313 | ID=Msa0321120-mRNA-1:exon:8171;Parent=Msa0321120-mRNA-1 |
| chr2_4 | exon | 22193109 | 22193330 | 22193109 | ID=Msa0321120-mRNA-1:exon:8172;Parent=Msa0321120-mRNA-1 |
| chr2_4 | exon | 22193839 | 22193916 | 22193839 | ID=Msa0321120-mRNA-1:exon:8173;Parent=Msa0321120-mRNA-1 |
| chr2_4 | exon | 22194693 | 22194784 | 22194693 | ID=Msa0321120-mRNA-1:exon:8174;Parent=Msa0321120-mRNA-1 |
| chr2_4 | five_prime_UTR | 22192313 | 22192911 | 22192313 | ID=Msa0321120-mRNA-1:five_prime_utr;Parent=Msa0321120-mRNA-1 |
| chr2_4 | CDS | 22192912 | 22192993 | 22192912 | ID=Msa0321120-mRNA-1:cds;Parent=Msa0321120-mRNA-1 |
| chr2_4 | CDS | 22193109 | 22193330 | 22193109 | ID=Msa0321120-mRNA-1:cds;Parent=Msa0321120-mRNA-1 |
| chr2_4 | CDS | 22193839 | 22193916 | 22193839 | ID=Msa0321120-mRNA-1:cds;Parent=Msa0321120-mRNA-1 |
| chr2_4 | CDS | 22194693 | 22194784 | 22194693 | ID=Msa0321120-mRNA-1:cds;Parent=Msa0321120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
