Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0953710 | sp|Q38967|AAP2_ARATH | 61.628 | 86 | 33 | 0 | 49 | 134 | 73 | 158 | 6.82e-29 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0953710 | I3SH75 | 96.512 | 86 | 3 | 0 | 49 | 134 | 54 | 139 | 2.24e-48 | 171 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0321120 | Msa0953710 | 0.851581 | 8.083881e-61 | -8.615850e-47 |
| Msa0535630 | Msa0953710 | 0.803759 | 2.990344e-49 | -8.615850e-47 |
| Msa0953710 | Msa0997340 | 0.823244 | 1.537386e-53 | -8.615850e-47 |
| Msa0953710 | Msa1136700 | 0.864479 | 1.180859e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0953710 | MtrunA17_Chr3g0130651 | 96.512 | 86 | 3 | 0 | 49 | 134 | 54 | 139 | 1.33e-51 | 171 |
| Msa0953710 | MtrunA17_Chr3g0130671 | 65.882 | 85 | 29 | 0 | 49 | 133 | 67 | 151 | 8.81e-32 | 115 |
| Msa0953710 | MtrunA17_Chr3g0125091 | 68.605 | 86 | 27 | 0 | 49 | 134 | 62 | 147 | 4.47e-31 | 117 |
| Msa0953710 | MtrunA17_Chr8g0384661 | 66.279 | 86 | 29 | 0 | 49 | 134 | 78 | 163 | 9.40e-31 | 116 |
| Msa0953710 | MtrunA17_Chr3g0125081 | 68.605 | 86 | 27 | 0 | 49 | 134 | 62 | 147 | 9.86e-31 | 116 |
| Msa0953710 | MtrunA17_Chr3g0125101 | 66.279 | 86 | 29 | 0 | 49 | 134 | 62 | 147 | 1.10e-29 | 113 |
| Msa0953710 | MtrunA17_Chr3g0130641 | 67.857 | 84 | 27 | 0 | 50 | 133 | 62 | 145 | 2.81e-29 | 112 |
| Msa0953710 | MtrunA17_Chr1g0159761 | 60.465 | 86 | 34 | 0 | 49 | 134 | 55 | 140 | 2.92e-28 | 109 |
| Msa0953710 | MtrunA17_Chr3g0140761 | 55.814 | 86 | 38 | 0 | 49 | 134 | 61 | 146 | 2.18e-26 | 104 |
| Msa0953710 | MtrunA17_Chr5g0402151 | 61.628 | 86 | 28 | 1 | 49 | 134 | 28 | 108 | 2.81e-26 | 101 |
| Msa0953710 | MtrunA17_Chr4g0037201 | 55.814 | 86 | 38 | 0 | 49 | 134 | 87 | 172 | 2.05e-25 | 101 |
| Msa0953710 | MtrunA17_Chr1g0146491 | 56.977 | 86 | 37 | 0 | 49 | 134 | 51 | 136 | 7.71e-25 | 99.8 |
| Msa0953710 | MtrunA17_Chr1g0206821 | 54.651 | 86 | 39 | 0 | 49 | 134 | 50 | 135 | 1.14e-22 | 94.0 |
| Msa0953710 | MtrunA17_Chr1g0206871 | 49.485 | 97 | 46 | 1 | 49 | 142 | 43 | 139 | 4.53e-22 | 92.0 |
| Msa0953710 | MtrunA17_Chr1g0146351 | 53.488 | 86 | 39 | 1 | 48 | 133 | 30 | 114 | 7.38e-22 | 85.5 |
| Msa0953710 | MtrunA17_Chr3g0140531 | 51.163 | 86 | 42 | 0 | 49 | 134 | 52 | 137 | 1.05e-19 | 85.5 |
| Msa0953710 | MtrunA17_Chr1g0146411 | 50.000 | 94 | 46 | 1 | 48 | 141 | 60 | 152 | 1.91e-19 | 84.7 |
| Msa0953710 | MtrunA17_Chr1g0212251 | 82.979 | 47 | 8 | 0 | 1 | 47 | 65 | 111 | 1.76e-17 | 79.3 |
| Msa0953710 | MtrunA17_Chr3g0140541 | 48.235 | 85 | 44 | 0 | 49 | 133 | 53 | 137 | 1.76e-17 | 79.0 |
| Msa0953710 | MtrunA17_Chr2g0293331 | 46.512 | 86 | 46 | 0 | 49 | 134 | 40 | 125 | 6.86e-17 | 77.4 |
| Msa0953710 | MtrunA17_Chr1g0146391 | 47.619 | 84 | 44 | 0 | 49 | 132 | 40 | 123 | 7.56e-17 | 77.4 |
| Msa0953710 | MtrunA17_Chr1g0212201 | 82.979 | 47 | 8 | 0 | 1 | 47 | 69 | 115 | 1.23e-16 | 76.6 |
| Msa0953710 | MtrunA17_Chr1g0146331 | 44.048 | 84 | 47 | 0 | 49 | 132 | 48 | 131 | 2.85e-16 | 75.5 |
| Msa0953710 | MtrunA17_Chr1g0212291 | 97.872 | 47 | 1 | 0 | 1 | 47 | 66 | 112 | 2.01e-15 | 73.2 |
| Msa0953710 | MtrunA17_Chr8g0390931 | 63.265 | 49 | 18 | 0 | 2 | 50 | 89 | 137 | 3.83e-13 | 66.6 |
| Msa0953710 | MtrunA17_Chr1g0206841 | 54.545 | 55 | 25 | 0 | 49 | 103 | 49 | 103 | 9.47e-13 | 61.6 |
| Msa0953710 | MtrunA17_Chr3g0103221 | 40.698 | 86 | 51 | 0 | 49 | 134 | 58 | 143 | 1.32e-12 | 65.1 |
| Msa0953710 | MtrunA17_Chr3g0103231 | 38.824 | 85 | 52 | 0 | 50 | 134 | 52 | 136 | 2.28e-12 | 64.3 |
| Msa0953710 | MtrunA17_Chr3g0103261 | 33.673 | 98 | 63 | 1 | 50 | 145 | 52 | 149 | 2.40e-12 | 62.0 |
| Msa0953710 | MtrunA17_Chr4g0054741 | 75.676 | 37 | 9 | 0 | 1 | 37 | 77 | 113 | 7.22e-12 | 62.8 |
| Msa0953710 | MtrunA17_Chr4g0054761 | 75.000 | 36 | 9 | 0 | 2 | 37 | 78 | 113 | 1.08e-11 | 60.1 |
| Msa0953710 | MtrunA17_Chr3g0103211 | 41.176 | 85 | 50 | 0 | 50 | 134 | 52 | 136 | 1.78e-11 | 61.6 |
| Msa0953710 | MtrunA17_Chr3g0103271 | 37.931 | 87 | 53 | 1 | 49 | 134 | 55 | 141 | 2.35e-11 | 61.2 |
| Msa0953710 | MtrunA17_Chr6g0484691 | 63.043 | 46 | 17 | 0 | 5 | 50 | 116 | 161 | 3.83e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0953710 | AT5G09220.1 | 61.628 | 86 | 33 | 0 | 49 | 134 | 73 | 158 | 6.93e-30 | 114 |
| Msa0953710 | AT5G63850.1 | 58.140 | 86 | 36 | 0 | 49 | 134 | 46 | 131 | 8.68e-30 | 114 |
| Msa0953710 | AT1G77380.1 | 65.882 | 85 | 29 | 0 | 50 | 134 | 58 | 142 | 3.18e-29 | 112 |
| Msa0953710 | AT1G44100.1 | 58.140 | 86 | 36 | 0 | 49 | 134 | 55 | 140 | 2.02e-27 | 107 |
| Msa0953710 | AT5G49630.1 | 58.140 | 86 | 36 | 0 | 49 | 134 | 60 | 145 | 2.25e-25 | 101 |
| Msa0953710 | AT1G58360.1 | 50.538 | 93 | 46 | 0 | 49 | 141 | 64 | 156 | 2.12e-24 | 99.0 |
| Msa0953710 | AT1G10010.1 | 52.273 | 88 | 42 | 0 | 49 | 136 | 55 | 142 | 2.28e-21 | 90.5 |
| Msa0953710 | AT1G10010.2 | 52.273 | 88 | 42 | 0 | 49 | 136 | 56 | 143 | 2.29e-21 | 90.5 |
| Msa0953710 | AT4G17970.1 | 76.596 | 47 | 11 | 0 | 1 | 47 | 67 | 113 | 4.74e-17 | 78.2 |
| Msa0953710 | AT5G46610.1 | 74.468 | 47 | 12 | 0 | 1 | 47 | 69 | 115 | 6.84e-15 | 72.0 |
| Msa0953710 | AT5G46600.1 | 51.852 | 81 | 26 | 2 | 1 | 69 | 70 | 149 | 7.42e-14 | 68.9 |
| Msa0953710 | AT5G23810.5 | 38.043 | 92 | 52 | 2 | 40 | 126 | 40 | 131 | 2.50e-11 | 60.5 |
| Msa0953710 | AT5G23810.3 | 38.043 | 92 | 52 | 2 | 40 | 126 | 40 | 131 | 2.50e-11 | 60.5 |
| Msa0953710 | AT5G23810.4 | 38.043 | 92 | 52 | 2 | 40 | 126 | 40 | 131 | 3.95e-11 | 60.5 |
| Msa0953710 | AT5G23810.1 | 38.043 | 92 | 52 | 2 | 40 | 126 | 40 | 131 | 7.04e-11 | 60.5 |
| Msa0953710 | AT5G23810.2 | 38.043 | 92 | 52 | 2 | 40 | 126 | 40 | 131 | 7.62e-11 | 60.1 |
Find 95 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGTCTGTGTGTTGGTTTC+TGG | 0.016885 | 6_3:+51478694 | Msa0953710:five_prime_UTR |
| GCTCAGTTGGTTTGGGTAAT+TGG | 0.223474 | 6_3:+51479308 | Msa0953710:CDS |
| GTCCTGGTTCGGCTCAGTTT+TGG | 0.256587 | 6_3:+51480502 | Msa0953710:CDS |
| CTACATGTTGAAGGCTAGTT+TGG | 0.257150 | 6_3:-51478541 | None:intergenic |
| CATTGGAGTGTTTGGGGTCT+GGG | 0.261166 | 6_3:+51480994 | Msa0953710:CDS |
| TGTTTCATTGTTGTATCTAA+TGG | 0.262149 | 6_3:+51478992 | Msa0953710:exon |
| GCATTGGAGTGTTTGGGGTC+TGG | 0.277520 | 6_3:+51480993 | Msa0953710:CDS |
| TTTGCGGTTTCGTCGGATCT+TGG | 0.277905 | 6_3:+51478666 | Msa0953710:five_prime_UTR |
| TTTCCTATCCCTTTGTATAA+TGG | 0.287311 | 6_3:-51479017 | None:intergenic |
| ATTGCGCGCATTGGAGTGTT+TGG | 0.298565 | 6_3:+51480986 | Msa0953710:CDS |
| TTGTAGAGACAAGTCCAATT+TGG | 0.299577 | 6_3:-51478412 | None:intergenic |
| GCCAGCAGCTGCTGTGGTGC+AGG | 0.303418 | 6_3:+51480963 | Msa0953710:CDS |
| AACTCTGTCAGCAGGATTAT+TGG | 0.318252 | 6_3:+51479280 | Msa0953710:CDS |
| TTGCGCGCATTGGAGTGTTT+GGG | 0.325274 | 6_3:+51480987 | Msa0953710:CDS |
| TCCTGCACCACAGCAGCTGC+TGG | 0.329371 | 6_3:-51480964 | None:intergenic |
| GAAGCTGTTCACACAATTCT+AGG | 0.331709 | 6_3:+51479443 | Msa0953710:CDS |
| GTTCAGTACACAAATCTTTA+CGG | 0.334346 | 6_3:+51480026 | Msa0953710:CDS |
| TGGTCATAGCTCAGTTGGTT+TGG | 0.340762 | 6_3:+51479300 | Msa0953710:CDS |
| TTACCTCTTTCGATTCTATT+CGG | 0.347249 | 6_3:-51478864 | None:intergenic |
| TTGCGGTTTCGTCGGATCTT+GGG | 0.360644 | 6_3:+51478667 | Msa0953710:five_prime_UTR |
| AAAGGACTTAATAGAGGATT+AGG | 0.369561 | 6_3:+51479257 | Msa0953710:CDS |
| GGTCATAGCTCAGTTGGTTT+GGG | 0.381927 | 6_3:+51479301 | Msa0953710:CDS |
| CGAATTGGTGATCCTCATTA+CGG | 0.382440 | 6_3:+51479398 | Msa0953710:CDS |
| TTAGCTGAACGTTATCGAAT+TGG | 0.383057 | 6_3:+51479383 | Msa0953710:CDS |
| TCTATTAAGTCCTTTGCATA+AGG | 0.384312 | 6_3:-51479249 | None:intergenic |
| CCTTCAACATGTAGATCCTT+TGG | 0.390436 | 6_3:+51478550 | Msa0953710:five_prime_UTR |
| AATCTTTACGGAACTGCAAT+AGG | 0.394383 | 6_3:+51480038 | Msa0953710:CDS |
| TCTCTTGCTCCTGCTTCATT+CGG | 0.400011 | 6_3:-51478719 | None:intergenic |
| GTTTCGTCGGATCTTGGGTT+TGG | 0.402535 | 6_3:+51478672 | Msa0953710:five_prime_UTR |
| CCAATCATTCATTCACGAAA+AGG | 0.404191 | 6_3:+51478754 | Msa0953710:five_prime_UTR |
| GCTGCTGCCAGCAGCTGCTG+TGG | 0.406003 | 6_3:+51480957 | Msa0953710:CDS |
| CGTTCTTCTTCCTCACGAAT+CGG | 0.410511 | 6_3:-51478812 | None:intergenic |
| TGAAGGCTAGTTTGGATTTG+AGG | 0.418168 | 6_3:-51478533 | None:intergenic |
| GGTTGTTTGTAGAGAGGAGG+AGG | 0.421060 | 6_3:-51478484 | None:intergenic |
| AAAGAGACTAGATCTAGGTT+TGG | 0.424811 | 6_3:-51478945 | None:intergenic |
| GATCTAGTCTCTTTGAAAGT+TGG | 0.427384 | 6_3:+51478954 | Msa0953710:five_prime_UTR |
| GCAATAGGATACACAATTGC+GGG | 0.428317 | 6_3:+51480053 | Msa0953710:CDS |
| AAAGAGGAACTATACTTTCA+TGG | 0.430550 | 6_3:+51479421 | Msa0953710:CDS |
| CTGACGGAGAGAAGTTGATC+TGG | 0.430791 | 6_3:-51478634 | None:intergenic |
| CTTTCAAAGAGACTAGATCT+AGG | 0.432292 | 6_3:-51478950 | None:intergenic |
| TTCTTCCTCACGAATCGGTC+GGG | 0.436012 | 6_3:-51478807 | None:intergenic |
| TCCTTTGGCTGGTGGTGCGA+TGG | 0.445597 | 6_3:+51478565 | Msa0953710:five_prime_UTR |
| GGGGTCTGGGTTTGATGCTG+TGG | 0.446369 | 6_3:+51481007 | Msa0953710:CDS |
| GATCACTCACATCATGCTAA+TGG | 0.460901 | 6_3:-51480078 | None:intergenic |
| AGCAGGAGCAAGAGAGGAAG+TGG | 0.462951 | 6_3:+51478727 | Msa0953710:five_prime_UTR |
| TGGGGTTGTTTGTAGAGAGG+AGG | 0.464294 | 6_3:-51478487 | None:intergenic |
| GGTTTCAATGACACCCTTTG+TGG | 0.466023 | 6_3:+51479999 | Msa0953710:CDS |
| TAATGGAACCATTATACAAA+GGG | 0.473888 | 6_3:+51479009 | Msa0953710:exon |
| TAGTTCCTCTTTCCGTAATG+AGG | 0.476378 | 6_3:-51479410 | None:intergenic |
| TGCTGTGGTGTGGTATGCGT+AGG | 0.480584 | 6_3:+51481022 | Msa0953710:CDS |
| GTTTGGGGTTGTTTGTAGAG+AGG | 0.482590 | 6_3:-51478490 | None:intergenic |
| CCAAAGGATCTACATGTTGA+AGG | 0.485295 | 6_3:-51478550 | None:intergenic |
| TTATGCAAAGGACTTAATAG+AGG | 0.486073 | 6_3:+51479251 | Msa0953710:CDS |
| GTGCAGCTGGTTGTATGTCC+TGG | 0.486559 | 6_3:+51480486 | Msa0953710:intron |
| AACAACACAAACGTTCAAAT+CGG | 0.490303 | 6_3:+51478777 | Msa0953710:five_prime_UTR |
| GAATCGAAAGAGGTAAATAG+AGG | 0.497094 | 6_3:+51478871 | Msa0953710:five_prime_UTR |
| GGGTTTGGCTGTCTGTGTGT+TGG | 0.497111 | 6_3:+51478687 | Msa0953710:five_prime_UTR |
| AACGAGGGGCGCTGGTGGTG+CGG | 0.501184 | 6_3:-51478596 | None:intergenic |
| CTTCTTCCTCACGAATCGGT+CGG | 0.503463 | 6_3:-51478808 | None:intergenic |
| TGGTGCAGGATTGCGCGCAT+TGG | 0.513268 | 6_3:+51480977 | Msa0953710:CDS |
| CCTTTGGCTGGTGGTGCGAT+GGG | 0.513598 | 6_3:+51478566 | Msa0953710:five_prime_UTR |
| TGCGCGCATTGGAGTGTTTG+GGG | 0.516069 | 6_3:+51480988 | Msa0953710:CDS |
| TTTCTGGAACCGAATGAAGC+AGG | 0.520221 | 6_3:+51478710 | Msa0953710:five_prime_UTR |
| ATGAGAAGAACGAGGGGCGC+TGG | 0.520530 | 6_3:-51478604 | None:intergenic |
| CAACATGTAGATCCTTTGGC+TGG | 0.521078 | 6_3:+51478554 | Msa0953710:five_prime_UTR |
| GCTGTGGTGTGGTATGCGTA+GGG | 0.524060 | 6_3:+51481023 | Msa0953710:CDS |
| CATGACTGTGGTTGTCGTCA+TGG | 0.525879 | 6_3:+51479058 | Msa0953710:CDS |
| GGATTAGGAACTCTGTCAGC+AGG | 0.527709 | 6_3:+51479272 | Msa0953710:CDS |
| GTTTCAATGACACCCTTTGT+GGG | 0.537172 | 6_3:+51480000 | Msa0953710:CDS |
| GAACCATTATACAAAGGGAT+AGG | 0.544422 | 6_3:+51479014 | Msa0953710:CDS |
| TCCCAAAACTGAGCCGAACC+AGG | 0.545193 | 6_3:-51480504 | None:intergenic |
| ATTATTGGTCATAGCTCAGT+TGG | 0.551033 | 6_3:+51479295 | Msa0953710:CDS |
| GAATGAAGCAGGAGCAAGAG+AGG | 0.552077 | 6_3:+51478721 | Msa0953710:five_prime_UTR |
| GTGATCCTCATTACGGAAAG+AGG | 0.563476 | 6_3:+51479405 | Msa0953710:CDS |
| AGGCTAGTTTGGATTTGAGG+AGG | 0.571649 | 6_3:-51478530 | None:intergenic |
| GTACTGAACTATCCCACAAA+GGG | 0.571823 | 6_3:-51480012 | None:intergenic |
| GCTGGTTGTATGTCCTGGTT+CGG | 0.572492 | 6_3:+51480491 | Msa0953710:CDS |
| AAACCGAATAGAATCGAAAG+AGG | 0.574061 | 6_3:+51478861 | Msa0953710:five_prime_UTR |
| CTGGGTTTGATGCTGTGGTG+TGG | 0.576682 | 6_3:+51481012 | Msa0953710:CDS |
| AGAAGAACGAGGGGCGCTGG+TGG | 0.576923 | 6_3:-51478601 | None:intergenic |
| CTGAAGAAAATCATAACAGA+AGG | 0.590235 | 6_3:-51479332 | None:intergenic |
| CATGTAGATCCTTTGGCTGG+TGG | 0.594338 | 6_3:+51478557 | Msa0953710:five_prime_UTR |
| CTGTGGTGTGGTATGCGTAG+GGG | 0.597558 | 6_3:+51481024 | Msa0953710:CDS |
| CTAATGGAACCATTATACAA+AGG | 0.603339 | 6_3:+51479008 | Msa0953710:exon |
| TGCAATAGGATACACAATTG+CGG | 0.626230 | 6_3:+51480052 | Msa0953710:CDS |
| GTCGTCATGGAGTTTACAGT+AGG | 0.630287 | 6_3:+51479071 | Msa0953710:CDS |
| GCAGGAGGAACCTTATGCAA+AGG | 0.631495 | 6_3:+51479239 | Msa0953710:intron |
| CCCATCGCACCACCAGCCAA+AGG | 0.639211 | 6_3:-51478566 | None:intergenic |
| CGATTCGTGAGGAAGAAGAA+CGG | 0.665989 | 6_3:+51478813 | Msa0953710:five_prime_UTR |
| AAGTACGATGAGAAGAACGA+GGG | 0.667025 | 6_3:-51478611 | None:intergenic |
| TAGATCCCGACCGATTCGTG+AGG | 0.670906 | 6_3:+51478802 | Msa0953710:five_prime_UTR |
| TGTACTGAACTATCCCACAA+AGG | 0.675008 | 6_3:-51480013 | None:intergenic |
| TGTTGTGGCTGTCATGACTG+TGG | 0.680786 | 6_3:+51479046 | Msa0953710:CDS |
| AGTACGATGAGAAGAACGAG+GGG | 0.708269 | 6_3:-51478610 | None:intergenic |
| GAAGTACGATGAGAAGAACG+AGG | 0.718095 | 6_3:-51478612 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATAGTATAATTTTGAAA+TGG | + | chr6_3:51479924-51479943 | Msa0953710:intron | 10.0% |
| !!! | TTTTAGTCTTTTTTTTTTTT+AGG | + | chr6_3:51480105-51480124 | Msa0953710:intron | 10.0% |
| !!! | AAATCAATATCAATTTTTTT+GGG | - | chr6_3:51480281-51480300 | None:intergenic | 10.0% |
| !!! | AAAATCAATATCAATTTTTT+TGG | - | chr6_3:51480282-51480301 | None:intergenic | 10.0% |
| !!! | AGTTATATTAAAGATTTTGA+GGG | - | chr6_3:51480342-51480361 | None:intergenic | 15.0% |
| !!! | AAGTTATATTAAAGATTTTG+AGG | - | chr6_3:51480343-51480362 | None:intergenic | 15.0% |
| !! | ATCAAATATTATTAATAGCT+AGG | - | chr6_3:51480640-51480659 | None:intergenic | 15.0% |
| !! | TATAATAACTGATATAATAG+TGG | - | chr6_3:51480787-51480806 | None:intergenic | 15.0% |
| !!! | TCAAGTAATATTTTAGAAAG+AGG | - | chr6_3:51478439-51478458 | None:intergenic | 20.0% |
| !! | TAGTAGTGATTATTAAATTC+TGG | - | chr6_3:51479724-51479743 | None:intergenic | 20.0% |
| !!! | AGAACGATTATTTTAGAAAG+AGG | - | chr6_3:51478464-51478483 | None:intergenic | 25.0% |
| ! | TGTTTCATTGTTGTATCTAA+TGG | + | chr6_3:51478992-51479011 | Msa0953710:exon | 25.0% |
| ! | TAATGGAACCATTATACAAA+GGG | + | chr6_3:51479009-51479028 | Msa0953710:exon | 25.0% |
| ! | TATTAAGATTACAGTCTCAT+AGG | + | chr6_3:51479202-51479221 | Msa0953710:intron | 25.0% |
| ! | TAGGTATTAAATATGATTGC+AGG | + | chr6_3:51479221-51479240 | Msa0953710:intron | 25.0% |
| ! | ATAATCGAAACGAATCAAAT+TGG | + | chr6_3:51479510-51479529 | Msa0953710:intron | 25.0% |
| !!! | TTTTATTTAGACTTTTGAGG+CGG | - | chr6_3:51480309-51480328 | None:intergenic | 25.0% |
| !!! | GCTTTTTATTTAGACTTTTG+AGG | - | chr6_3:51480312-51480331 | None:intergenic | 25.0% |
| ! | AATAAAATACCCCCTAAAAT+CGG | - | chr6_3:51480530-51480549 | None:intergenic | 25.0% |
| !!! | GTATTTTATTGAGTTGTTGT+AGG | + | chr6_3:51480540-51480559 | Msa0953710:intron | 25.0% |
| ! | AGAAAAAGTGAAGTTGGTTT+GGG | - | chr6_3:51478509-51478528 | None:intergenic | 30.0% |
| ! | AAGAAAAAGTGAAGTTGGTT+TGG | - | chr6_3:51478510-51478529 | None:intergenic | 30.0% |
| AACAACACAAACGTTCAAAT+CGG | + | chr6_3:51478777-51478796 | Msa0953710:five_prime_UTR | 30.0% | |
| TTACCTCTTTCGATTCTATT+CGG | - | chr6_3:51478867-51478886 | None:intergenic | 30.0% | |
| CGAAAAAAAGTTTGAACAGA+AGG | - | chr6_3:51478920-51478939 | None:intergenic | 30.0% | |
| CTAATGGAACCATTATACAA+AGG | + | chr6_3:51479008-51479027 | Msa0953710:exon | 30.0% | |
| TTTCCTATCCCTTTGTATAA+TGG | - | chr6_3:51479020-51479039 | None:intergenic | 30.0% | |
| GATAGGAAAAAATGTTGTTG+TGG | + | chr6_3:51479031-51479050 | Msa0953710:CDS | 30.0% | |
| GTATTAAATATGATTGCAGG+AGG | + | chr6_3:51479224-51479243 | Msa0953710:intron | 30.0% | |
| TCTATTAAGTCCTTTGCATA+AGG | - | chr6_3:51479252-51479271 | None:intergenic | 30.0% | |
| TTATGCAAAGGACTTAATAG+AGG | + | chr6_3:51479251-51479270 | Msa0953710:CDS | 30.0% | |
| AAAGGACTTAATAGAGGATT+AGG | + | chr6_3:51479257-51479276 | Msa0953710:CDS | 30.0% | |
| CTGAAGAAAATCATAACAGA+AGG | - | chr6_3:51479335-51479354 | None:intergenic | 30.0% | |
| AAAGAGGAACTATACTTTCA+TGG | + | chr6_3:51479421-51479440 | Msa0953710:CDS | 30.0% | |
| AACTGTGAAGTAAGTGTTTA+TGG | + | chr6_3:51479549-51479568 | Msa0953710:intron | 30.0% | |
| CTAGTTTAAACTGCTCAAAA+TGG | - | chr6_3:51479610-51479629 | None:intergenic | 30.0% | |
| !!! | TGACTTTGTTTTTGTGTACT+TGG | - | chr6_3:51479767-51479786 | None:intergenic | 30.0% |
| !! | TGATTTGGTCATATACTTCT+TGG | + | chr6_3:51479799-51479818 | Msa0953710:intron | 30.0% |
| ! | TGAGAATCAAATGATTTTGC+AGG | + | chr6_3:51479975-51479994 | Msa0953710:intron | 30.0% |
| GTTCAGTACACAAATCTTTA+CGG | + | chr6_3:51480026-51480045 | Msa0953710:CDS | 30.0% | |
| AGGAAACACAACAAAATTGA+GGG | - | chr6_3:51480373-51480392 | None:intergenic | 30.0% | |
| !! | TTTTATTGAGTTGTTGTAGG+TGG | + | chr6_3:51480543-51480562 | Msa0953710:intron | 30.0% |
| !! | ATTGTTGTTGTCTTCTGTTT+TGG | + | chr6_3:51480846-51480865 | Msa0953710:intron | 30.0% |
| !! | GAAAAAGTGAAGTTGGTTTG+GGG | - | chr6_3:51478508-51478527 | None:intergenic | 35.0% |
| ! | CCTTTTCGTGAATGAATGAT+TGG | - | chr6_3:51478757-51478776 | None:intergenic | 35.0% |
| CCAATCATTCATTCACGAAA+AGG | + | chr6_3:51478754-51478773 | Msa0953710:five_prime_UTR | 35.0% | |
| AAACCGAATAGAATCGAAAG+AGG | + | chr6_3:51478861-51478880 | Msa0953710:five_prime_UTR | 35.0% | |
| GAATCGAAAGAGGTAAATAG+AGG | + | chr6_3:51478871-51478890 | Msa0953710:five_prime_UTR | 35.0% | |
| AAAGAGACTAGATCTAGGTT+TGG | - | chr6_3:51478948-51478967 | None:intergenic | 35.0% | |
| CTTTCAAAGAGACTAGATCT+AGG | - | chr6_3:51478953-51478972 | None:intergenic | 35.0% | |
| ! | GATCTAGTCTCTTTGAAAGT+TGG | + | chr6_3:51478954-51478973 | Msa0953710:five_prime_UTR | 35.0% |
| GAACCATTATACAAAGGGAT+AGG | + | chr6_3:51479014-51479033 | Msa0953710:CDS | 35.0% | |
| ATTATTGGTCATAGCTCAGT+TGG | + | chr6_3:51479295-51479314 | Msa0953710:CDS | 35.0% | |
| TTAGCTGAACGTTATCGAAT+TGG | + | chr6_3:51479383-51479402 | Msa0953710:CDS | 35.0% | |
| ! | GAATCAAATGATTTTGCAGG+AGG | + | chr6_3:51479978-51479997 | Msa0953710:intron | 35.0% |
| AATCTTTACGGAACTGCAAT+AGG | + | chr6_3:51480038-51480057 | Msa0953710:CDS | 35.0% | |
| TGCAATAGGATACACAATTG+CGG | + | chr6_3:51480052-51480071 | Msa0953710:CDS | 35.0% | |
| CAGGAAACACAACAAAATTG+AGG | - | chr6_3:51480374-51480393 | None:intergenic | 35.0% | |
| ! | TACTCTTTTTGCTCCTTTTG+CGG | + | chr6_3:51480595-51480614 | Msa0953710:intron | 35.0% |
| GGAGGAAGAAAAAGTGAAGT+TGG | - | chr6_3:51478515-51478534 | None:intergenic | 40.0% | |
| !! | TGAAGGCTAGTTTGGATTTG+AGG | - | chr6_3:51478536-51478555 | None:intergenic | 40.0% |
| ! | CTACATGTTGAAGGCTAGTT+TGG | - | chr6_3:51478544-51478563 | None:intergenic | 40.0% |
| CCAAAGGATCTACATGTTGA+AGG | - | chr6_3:51478553-51478572 | None:intergenic | 40.0% | |
| CCTTCAACATGTAGATCCTT+TGG | + | chr6_3:51478550-51478569 | Msa0953710:five_prime_UTR | 40.0% | |
| AAGTACGATGAGAAGAACGA+GGG | - | chr6_3:51478614-51478633 | None:intergenic | 40.0% | |
| CCGCAAAAACTCAAATCTGA+CGG | - | chr6_3:51478653-51478672 | None:intergenic | 40.0% | |
| !! | CCGTCAGATTTGAGTTTTTG+CGG | + | chr6_3:51478650-51478669 | Msa0953710:five_prime_UTR | 40.0% |
| ! | TTGAGTTTTTGCGGTTTCGT+CGG | + | chr6_3:51478659-51478678 | Msa0953710:five_prime_UTR | 40.0% |
| TCATGGAGTTTACAGTAGGT+AGG | + | chr6_3:51479075-51479094 | Msa0953710:intron | 40.0% | |
| AACTCTGTCAGCAGGATTAT+TGG | + | chr6_3:51479280-51479299 | Msa0953710:CDS | 40.0% | |
| ! | TTTTCTTCAGTCTCATCACG+TGG | + | chr6_3:51479345-51479364 | Msa0953710:CDS | 40.0% |
| ! | CGAATTGGTGATCCTCATTA+CGG | + | chr6_3:51479398-51479417 | Msa0953710:CDS | 40.0% |
| TAGTTCCTCTTTCCGTAATG+AGG | - | chr6_3:51479413-51479432 | None:intergenic | 40.0% | |
| GAAGCTGTTCACACAATTCT+AGG | + | chr6_3:51479443-51479462 | Msa0953710:CDS | 40.0% | |
| TCACACGTTTGCACTTGATT+TGG | + | chr6_3:51479784-51479803 | Msa0953710:intron | 40.0% | |
| GTTTCAATGACACCCTTTGT+GGG | + | chr6_3:51480000-51480019 | Msa0953710:CDS | 40.0% | |
| GTACTGAACTATCCCACAAA+GGG | - | chr6_3:51480015-51480034 | None:intergenic | 40.0% | |
| TGTACTGAACTATCCCACAA+AGG | - | chr6_3:51480016-51480035 | None:intergenic | 40.0% | |
| GCAATAGGATACACAATTGC+GGG | + | chr6_3:51480053-51480072 | Msa0953710:CDS | 40.0% | |
| GATCACTCACATCATGCTAA+TGG | - | chr6_3:51480081-51480100 | None:intergenic | 40.0% | |
| !! | TTGTTTTTCTGTAGTGCAGC+TGG | + | chr6_3:51480473-51480492 | Msa0953710:intron | 40.0% |
| !!! | TCAGTTTTGGGACCGATTTT+AGG | + | chr6_3:51480515-51480534 | Msa0953710:CDS | 40.0% |
| !!! | CAGTTTTGGGACCGATTTTA+GGG | + | chr6_3:51480516-51480535 | Msa0953710:CDS | 40.0% |
| !!! | AGTTTTGGGACCGATTTTAG+GGG | + | chr6_3:51480517-51480536 | Msa0953710:CDS | 40.0% |
| ! | TTGAGTTGTTGTAGGTGGTA+AGG | + | chr6_3:51480548-51480567 | Msa0953710:intron | 40.0% |
| TGAGTTGTTGTAGGTGGTAA+GGG | + | chr6_3:51480549-51480568 | Msa0953710:intron | 40.0% | |
| ! | ACTCTTTTTGCTCCTTTTGC+GGG | + | chr6_3:51480596-51480615 | Msa0953710:intron | 40.0% |
| !!! | TTCTGTTTTGGTCTGTTGTG+TGG | + | chr6_3:51480858-51480877 | Msa0953710:intron | 40.0% |
| !!! | TGGTCTGTTGTGTGGTTTTT+TGG | + | chr6_3:51480866-51480885 | Msa0953710:intron | 40.0% |
| !!! | GGTTTTTTGGTGTTGATAGC+AGG | + | chr6_3:51480879-51480898 | Msa0953710:intron | 40.0% |
| ! | GTTTGGGGTTGTTTGTAGAG+AGG | - | chr6_3:51478493-51478512 | None:intergenic | 45.0% |
| !! | AGGCTAGTTTGGATTTGAGG+AGG | - | chr6_3:51478533-51478552 | None:intergenic | 45.0% |
| CAACATGTAGATCCTTTGGC+TGG | + | chr6_3:51478554-51478573 | Msa0953710:five_prime_UTR | 45.0% | |
| AGTACGATGAGAAGAACGAG+GGG | - | chr6_3:51478613-51478632 | None:intergenic | 45.0% | |
| GAAGTACGATGAGAAGAACG+AGG | - | chr6_3:51478615-51478634 | None:intergenic | 45.0% | |
| !! | TTTCTGGAACCGAATGAAGC+AGG | + | chr6_3:51478710-51478729 | Msa0953710:five_prime_UTR | 45.0% |
| TCTCTTGCTCCTGCTTCATT+CGG | - | chr6_3:51478722-51478741 | None:intergenic | 45.0% | |
| CGTTCTTCTTCCTCACGAAT+CGG | - | chr6_3:51478815-51478834 | None:intergenic | 45.0% | |
| CGATTCGTGAGGAAGAAGAA+CGG | + | chr6_3:51478813-51478832 | Msa0953710:five_prime_UTR | 45.0% | |
| GTCGTCATGGAGTTTACAGT+AGG | + | chr6_3:51479071-51479090 | Msa0953710:CDS | 45.0% | |
| TGGTCATAGCTCAGTTGGTT+TGG | + | chr6_3:51479300-51479319 | Msa0953710:CDS | 45.0% | |
| ! | GGTCATAGCTCAGTTGGTTT+GGG | + | chr6_3:51479301-51479320 | Msa0953710:CDS | 45.0% |
| !! | GCTCAGTTGGTTTGGGTAAT+TGG | + | chr6_3:51479308-51479327 | Msa0953710:CDS | 45.0% |
| GTGATCCTCATTACGGAAAG+AGG | + | chr6_3:51479405-51479424 | Msa0953710:CDS | 45.0% | |
| GGTTTCAATGACACCCTTTG+TGG | + | chr6_3:51479999-51480018 | Msa0953710:CDS | 45.0% | |
| !!! | GTTTTGGGACCGATTTTAGG+GGG | + | chr6_3:51480518-51480537 | Msa0953710:CDS | 45.0% |
| CACAAGAGCCTAACAACAAG+AGG | - | chr6_3:51480575-51480594 | None:intergenic | 45.0% | |
| AAGATGCACAAACCCGCAAA+AGG | - | chr6_3:51480611-51480630 | None:intergenic | 45.0% | |
| !! | TCTTCTGTTTGAGTTGCTGC+TGG | + | chr6_3:51480909-51480928 | Msa0953710:intron | 45.0% |
| GGTTGTTTGTAGAGAGGAGG+AGG | - | chr6_3:51478487-51478506 | None:intergenic | 50.0% | |
| TGGGGTTGTTTGTAGAGAGG+AGG | - | chr6_3:51478490-51478509 | None:intergenic | 50.0% | |
| CATGTAGATCCTTTGGCTGG+TGG | + | chr6_3:51478557-51478576 | Msa0953710:five_prime_UTR | 50.0% | |
| ! | CTGACGGAGAGAAGTTGATC+TGG | - | chr6_3:51478637-51478656 | None:intergenic | 50.0% |
| TTTGCGGTTTCGTCGGATCT+TGG | + | chr6_3:51478666-51478685 | Msa0953710:five_prime_UTR | 50.0% | |
| TTGCGGTTTCGTCGGATCTT+GGG | + | chr6_3:51478667-51478686 | Msa0953710:five_prime_UTR | 50.0% | |
| GTTTCGTCGGATCTTGGGTT+TGG | + | chr6_3:51478672-51478691 | Msa0953710:five_prime_UTR | 50.0% | |
| !! | GCTGTCTGTGTGTTGGTTTC+TGG | + | chr6_3:51478694-51478713 | Msa0953710:five_prime_UTR | 50.0% |
| GAATGAAGCAGGAGCAAGAG+AGG | + | chr6_3:51478721-51478740 | Msa0953710:five_prime_UTR | 50.0% | |
| TTCTTCCTCACGAATCGGTC+GGG | - | chr6_3:51478810-51478829 | None:intergenic | 50.0% | |
| CTTCTTCCTCACGAATCGGT+CGG | - | chr6_3:51478811-51478830 | None:intergenic | 50.0% | |
| TGTTGTGGCTGTCATGACTG+TGG | + | chr6_3:51479046-51479065 | Msa0953710:CDS | 50.0% | |
| CATGACTGTGGTTGTCGTCA+TGG | + | chr6_3:51479058-51479077 | Msa0953710:CDS | 50.0% | |
| GCAGGAGGAACCTTATGCAA+AGG | + | chr6_3:51479239-51479258 | Msa0953710:intron | 50.0% | |
| GGATTAGGAACTCTGTCAGC+AGG | + | chr6_3:51479272-51479291 | Msa0953710:CDS | 50.0% | |
| GCTGGTTGTATGTCCTGGTT+CGG | + | chr6_3:51480491-51480510 | Msa0953710:CDS | 50.0% | |
| !!! | TCCTGGTTCGGCTCAGTTTT+GGG | + | chr6_3:51480503-51480522 | Msa0953710:CDS | 50.0% |
| !! | GGTAAGGGCCTCTTGTTGTT+AGG | + | chr6_3:51480564-51480583 | Msa0953710:intron | 50.0% |
| ! | ATTGCGCGCATTGGAGTGTT+TGG | + | chr6_3:51480986-51481005 | Msa0953710:CDS | 50.0% |
| ! | TTGCGCGCATTGGAGTGTTT+GGG | + | chr6_3:51480987-51481006 | Msa0953710:CDS | 50.0% |
| ! | CATTGGAGTGTTTGGGGTCT+GGG | + | chr6_3:51480994-51481013 | Msa0953710:CDS | 50.0% |
| GGGTTTGGCTGTCTGTGTGT+TGG | + | chr6_3:51478687-51478706 | Msa0953710:five_prime_UTR | 55.0% | |
| AGCAGGAGCAAGAGAGGAAG+TGG | + | chr6_3:51478727-51478746 | Msa0953710:five_prime_UTR | 55.0% | |
| !! | TAGATCCCGACCGATTCGTG+AGG | + | chr6_3:51478802-51478821 | Msa0953710:five_prime_UTR | 55.0% |
| AGTGCAGTCTGGTTGTGCTG+TGG | + | chr6_3:51480414-51480433 | Msa0953710:intron | 55.0% | |
| GTGCAGCTGGTTGTATGTCC+TGG | + | chr6_3:51480486-51480505 | Msa0953710:intron | 55.0% | |
| !!! | GTCCTGGTTCGGCTCAGTTT+TGG | + | chr6_3:51480502-51480521 | Msa0953710:CDS | 55.0% |
| TCCCAAAACTGAGCCGAACC+AGG | - | chr6_3:51480507-51480526 | None:intergenic | 55.0% | |
| ! | TGCGCGCATTGGAGTGTTTG+GGG | + | chr6_3:51480988-51481007 | Msa0953710:CDS | 55.0% |
| ! | GCATTGGAGTGTTTGGGGTC+TGG | + | chr6_3:51480993-51481012 | Msa0953710:CDS | 55.0% |
| CTGGGTTTGATGCTGTGGTG+TGG | + | chr6_3:51481012-51481031 | Msa0953710:CDS | 55.0% | |
| ! | TCCTTTGGCTGGTGGTGCGA+TGG | + | chr6_3:51478565-51478584 | Msa0953710:five_prime_UTR | 60.0% |
| ! | CCTTTGGCTGGTGGTGCGAT+GGG | + | chr6_3:51478566-51478585 | Msa0953710:five_prime_UTR | 60.0% |
| ! | ATGAGAAGAACGAGGGGCGC+TGG | - | chr6_3:51478607-51478626 | None:intergenic | 60.0% |
| GTGTTTCCTGCGTGCTGCAC+CGG | + | chr6_3:51480384-51480403 | Msa0953710:intron | 60.0% | |
| TCTGGTTGTGCTGTGGCAGC+AGG | + | chr6_3:51480421-51480440 | Msa0953710:intron | 60.0% | |
| TTGTGCTGTGGCAGCAGGAG+TGG | + | chr6_3:51480426-51480445 | Msa0953710:intron | 60.0% | |
| CTGCTGGCAGCAGCAACAAC+TGG | - | chr6_3:51480951-51480970 | None:intergenic | 60.0% | |
| TGGTGCAGGATTGCGCGCAT+TGG | + | chr6_3:51480977-51480996 | Msa0953710:CDS | 60.0% | |
| GGGGTCTGGGTTTGATGCTG+TGG | + | chr6_3:51481007-51481026 | Msa0953710:CDS | 60.0% | |
| CCCATCGCACCACCAGCCAA+AGG | - | chr6_3:51478569-51478588 | None:intergenic | 65.0% | |
| !! | AGAAGAACGAGGGGCGCTGG+TGG | - | chr6_3:51478604-51478623 | None:intergenic | 65.0% |
| CCAGACTGCACTGCAGCAGC+CGG | - | chr6_3:51480406-51480425 | None:intergenic | 65.0% | |
| TCCTGCACCACAGCAGCTGC+TGG | - | chr6_3:51480967-51480986 | None:intergenic | 65.0% | |
| !! | AACGAGGGGCGCTGGTGGTG+CGG | - | chr6_3:51478599-51478618 | None:intergenic | 70.0% |
| CCGGCTGCTGCAGTGCAGTC+TGG | + | chr6_3:51480403-51480422 | Msa0953710:intron | 70.0% | |
| GCTGCTGCCAGCAGCTGCTG+TGG | + | chr6_3:51480957-51480976 | Msa0953710:CDS | 70.0% | |
| GCCAGCAGCTGCTGTGGTGC+AGG | + | chr6_3:51480963-51480982 | Msa0953710:CDS | 70.0% | |
| CAGCAGCCGGTGCAGCACGC+AGG | - | chr6_3:51480393-51480412 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 51478415 | 51481043 | 51478415 | ID=Msa0953710;Name=Msa0953710 |
| chr6_3 | mRNA | 51478415 | 51481043 | 51478415 | ID=Msa0953710-mRNA-1;Parent=Msa0953710;Name=Msa0953710-mRNA-1;_AED=0.13;_eAED=0.21;_QI=596|0.5|0.6|0.8|1|1|5|0|180 |
| chr6_3 | exon | 51478415 | 51479092 | 51478415 | ID=Msa0953710-mRNA-1:exon:11004;Parent=Msa0953710-mRNA-1 |
| chr6_3 | exon | 51479243 | 51479464 | 51479243 | ID=Msa0953710-mRNA-1:exon:11005;Parent=Msa0953710-mRNA-1 |
| chr6_3 | exon | 51479997 | 51480090 | 51479997 | ID=Msa0953710-mRNA-1:exon:11006;Parent=Msa0953710-mRNA-1 |
| chr6_3 | exon | 51480487 | 51480539 | 51480487 | ID=Msa0953710-mRNA-1:exon:11007;Parent=Msa0953710-mRNA-1 |
| chr6_3 | exon | 51480952 | 51481043 | 51480952 | ID=Msa0953710-mRNA-1:exon:11008;Parent=Msa0953710-mRNA-1 |
| chr6_3 | five_prime_UTR | 51478415 | 51479010 | 51478415 | ID=Msa0953710-mRNA-1:five_prime_utr;Parent=Msa0953710-mRNA-1 |
| chr6_3 | CDS | 51479011 | 51479092 | 51479011 | ID=Msa0953710-mRNA-1:cds;Parent=Msa0953710-mRNA-1 |
| chr6_3 | CDS | 51479243 | 51479464 | 51479243 | ID=Msa0953710-mRNA-1:cds;Parent=Msa0953710-mRNA-1 |
| chr6_3 | CDS | 51479997 | 51480090 | 51479997 | ID=Msa0953710-mRNA-1:cds;Parent=Msa0953710-mRNA-1 |
| chr6_3 | CDS | 51480487 | 51480539 | 51480487 | ID=Msa0953710-mRNA-1:cds;Parent=Msa0953710-mRNA-1 |
| chr6_3 | CDS | 51480952 | 51481043 | 51480952 | ID=Msa0953710-mRNA-1:cds;Parent=Msa0953710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
